17-03-18 01:29:33.130 -07 000000610 INF: =================== Cycle #88 ===================
17-03-18 01:29:33.140 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 01:29:33.140 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-18 01:29:33.140 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:29:33.140 -07 000000590 INF: FPGA: Recv YRDPOS 153256
17-03-18 01:29:33.150 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:33.150 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:29:33.150 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 01:29:33.150 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 01:29:33.150 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 01:29:33.260 -07 000000438 INF: FPGA: Recv YMVTO 154378 878
17-03-18 01:29:33.260 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 108 ms to get response, and 117 ms overall
17-03-18 01:29:33.260 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 01:29:33.260 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 878 steps (0.549 mm). Slippage = 0.001 mm (0.00%).
17-03-18 01:29:33.260 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 118 ms, distance = 0.549 mm, average velocity = 4.649 mm/sec
17-03-18 01:29:34.520 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.008536,
17-03-18 01:29:36.260 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:29:36.260 -07 000000461 INF: FPGA: Recv YRDPOS 154387
17-03-18 01:29:36.270 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:29:36.270 -07 000000610 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:29:36.290 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.003697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:29:36.290 -07 000000610 INF: Y Motor: Position error after settling = 8 encoder counts (0.004 mm), Delta during settling = 9 counts (0.004 mm)
17-03-18 01:29:36.290 -07 000000610 INF: Y Motor: Moved to 75.3843 after 3156 ms
17-03-18 01:29:36.300 -07 000000610 INF: =================== Cycle #88, Flow Cell Temp 60° ===================
17-03-18 01:29:36.300 -07 000000610 INF: =================== Cycle #88, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 01:29:36.300 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 01:29:36.300 -07 000000455 INF: FPGA: Recv TEC2TEMP 
17-03-18 01:29:36.310 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:29:36.310 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 01:29:36.310 -07 000000461 INF: FPGA: Recv TEC2EN 
17-03-18 01:29:36.320 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:29:36.320 -07 000000610 INF: =================== Cycle #88, Flow Cell Temp 60° ===================
17-03-18 01:29:36.320 -07 000000610 INF: =================== Cycle #88 ===================
17-03-18 01:29:36.320 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:29:36.320 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:29:36.350 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 01:29:36.350 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 01:29:36.350 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 01:29:36.650 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:29:36.670 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 01:29:36.670 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 01:29:36.720 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:29:36.740 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:29:36.740 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:29:36.840 -07 000000610 INF: =================== Cycle #88, Pumping Reagent PR2 (3) ===================
17-03-18 01:29:36.840 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 01:29:36.900 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:29:36.930 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 01:29:36.930 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 01:29:36.930 -07 000000610 INF: =================== Cycle #88, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:29:37.060 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 01:29:37.100 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:29:37.260 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:29:37.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1389, R2=1443, Total=2832. Warn if over 250 bubbles per interval.
17-03-18 01:29:39.900 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 3.981281,
17-03-18 01:29:40.230 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:29:40.260 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:29:40.680 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:29:40.710 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:29:41.130 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:29:41.160 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:29:41.160 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 01:29:41.160 -07 000000610 INF: =================== Cycle #88, Pumping Reagent PR2 (3) ===================
17-03-18 01:29:41.290 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:29:41.320 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:29:41.320 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:29:41.450 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:29:41.480 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:29:41.480 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:29:41.480 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:29:41.610 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:29:41.640 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:29:42.070 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:29:42.100 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:29:42.100 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:29:42.100 -07 000000610 INF: =================== Cycle #88 ===================
17-03-18 01:29:42.270 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 3
17-03-18 01:29:42.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=3, R2=2, Total=5. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1392, R2=1445, Total=2837. Warn if over 250 bubbles per interval.
17-03-18 01:29:43.320 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:29:43.320 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 01:29:43.320 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:29:43.340 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:29:43.340 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 01:29:43.340 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 01:29:43.470 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:29:43.490 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 01:29:43.490 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 01:29:43.540 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:29:43.560 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 01:29:43.560 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:29:43.660 -07 000000610 INF: =================== Cycle #88, Pumping Reagent CMS (4) ===================
17-03-18 01:29:43.660 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 01:29:43.660 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:29:43.690 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:29:43.690 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:29:43.690 -07 000000610 INF: =================== Cycle #88, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 01:29:43.820 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 01:29:43.860 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:29:45.260 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 3.997626,
17-03-18 01:29:45.300 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:29:46.150 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:29:46.570 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:29:46.600 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:29:46.600 -07 000000610 INF: LanePump: Waited 2739 ms for pump motion to complete
17-03-18 01:29:46.600 -07 000000610 INF: =================== Cycle #88, Pumping Reagent CMS (4) ===================
17-03-18 01:29:46.730 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:29:46.760 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:29:46.760 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:29:46.890 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:29:46.920 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:29:46.920 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:29:46.920 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:29:47.050 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:29:47.080 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:29:47.270 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 01:29:47.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1392, R2=1446, Total=2838. Warn if over 250 bubbles per interval.
17-03-18 01:29:47.510 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:29:47.540 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:29:47.540 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:29:47.540 -07 000000610 INF: =================== Cycle #88 ===================
17-03-18 01:29:48.760 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:29:48.760 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:29:48.760 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:29:48.780 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 01:29:48.780 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 01:29:48.780 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 01:29:48.930 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:29:48.950 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 01:29:48.950 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 01:29:49.000 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:29:49.020 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:29:49.020 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:29:49.120 -07 000000610 INF: =================== Cycle #88, Pumping Reagent PR2 (3) ===================
17-03-18 01:29:49.120 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 01:29:49.120 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:29:49.150 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:29:49.150 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:29:49.150 -07 000000610 INF: =================== Cycle #88, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:29:49.280 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 01:29:49.320 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:29:50.190 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:29:50.220 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:29:50.220 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 01:29:50.220 -07 000000610 INF: =================== Cycle #88, Pumping Reagent PR2 (3) ===================
17-03-18 01:29:50.350 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:29:50.380 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:29:50.380 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:29:50.510 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:29:50.540 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:29:50.540 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:29:50.540 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:29:50.670 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:29:50.700 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:29:51.130 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:29:51.160 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:29:51.160 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:29:51.160 -07 000000610 INF: =================== Cycle #88 ===================
17-03-18 01:29:51.160 -07 000000424 INF: WaitCommand(10000) start
17-03-18 01:29:51.160 -07 000000618 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:29:51.160 -07 000000618 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 01:29:51.920 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.014009,
17-03-18 01:29:52.270 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:29:52.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1392, R2=1446, Total=2838. Warn if over 250 bubbles per interval.
17-03-18 01:29:52.380 -07 000000618 INF: AsyncDelayTimer waited 1216ms
17-03-18 01:29:52.380 -07 000000618 INF: LanePump: Xmit /1?\r
17-03-18 01:29:52.410 -07 000000618 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:29:52.410 -07 000000618 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:29:52.540 -07 000000618 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 01:29:52.580 -07 000000618 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:29:54.110 -07 000000618 INF: LanePump: Xmit /1Q\r
17-03-18 01:29:54.140 -07 000000618 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:29:54.560 -07 000000618 INF: LanePump: Xmit /1Q\r
17-03-18 01:29:54.590 -07 000000618 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:29:54.590 -07 000000618 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 01:29:54.590 -07 000000618 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:29:54.590 -07 000000618 INF: ===================  ===================
17-03-18 01:29:57.260 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:29:57.260 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1392, R2=1446, Total=2838. Warn if over 250 bubbles per interval.
17-03-18 01:29:57.280 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 3.990831,
17-03-18 01:30:01.170 -07 000000424 INF: WaitCommand(10000) end
17-03-18 01:30:01.170 -07 000000610 INF: =================== Cycle #88, Pumping Reagent PR2 (3) ===================
17-03-18 01:30:01.170 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 01:30:01.170 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:30:02.140 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 01:30:02.140 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 01:30:02.140 -07 000000610 INF: =================== Cycle #88, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:30:02.260 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:30:02.270 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 01:30:02.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1392, R2=1446, Total=2838. Warn if over 250 bubbles per interval.
17-03-18 01:30:02.310 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:30:02.640 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.009895,
17-03-18 01:30:07.260 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:30:07.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1392, R2=1446, Total=2838. Warn if over 250 bubbles per interval.
17-03-18 01:30:08.000 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 3.997626,
17-03-18 01:30:08.440 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:30:08.470 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:30:08.890 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:30:08.920 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:30:09.340 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:30:09.370 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:30:09.790 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:30:09.820 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:30:10.240 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:30:10.270 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:30:10.270 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 01:30:10.270 -07 000000610 INF: =================== Cycle #88, Pumping Reagent PR2 (3) ===================
17-03-18 01:30:10.400 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:30:10.430 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 01:30:10.430 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 01:30:10.560 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:30:10.590 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 01:30:10.590 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 01:30:10.590 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:30:10.720 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:30:10.750 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:30:11.180 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:30:11.210 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:30:11.210 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:30:11.210 -07 000000610 INF: =================== Cycle #88 ===================
17-03-18 01:30:12.260 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 01:30:12.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1394, R2=1448, Total=2842. Warn if over 250 bubbles per interval.
17-03-18 01:30:12.430 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 01:30:12.430 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 01:30:12.430 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:30:12.450 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:30:12.450 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 01:30:12.450 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 01:30:12.660 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:30:12.680 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 01:30:12.680 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 01:30:12.730 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:30:12.750 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 01:30:12.750 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:30:12.850 -07 000000610 INF: =================== Cycle #88, Pumping Reagent IMT (1) ===================
17-03-18 01:30:12.850 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 01:30:12.850 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:30:12.880 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 01:30:12.880 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 01:30:12.880 -07 000000610 INF: =================== Cycle #88, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 01:30:13.010 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 01:30:13.050 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:30:13.360 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.011254,
17-03-18 01:30:14.490 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:30:14.520 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:30:14.940 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:30:14.970 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:30:14.970 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 01:30:14.970 -07 000000610 INF: =================== Cycle #88, Pumping Reagent IMT (1) ===================
17-03-18 01:30:15.100 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:30:15.130 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 01:30:15.130 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 01:30:15.260 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:30:15.290 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 01:30:15.290 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 01:30:15.290 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:30:15.420 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:30:15.450 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:30:15.880 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:30:15.910 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:30:15.910 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:30:15.910 -07 000000610 INF: =================== Cycle #88 ===================
17-03-18 01:30:17.130 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 01:30:17.130 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:30:17.130 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:30:17.150 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 01:30:17.150 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 01:30:17.150 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 01:30:17.260 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:30:17.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1394, R2=1448, Total=2842. Warn if over 250 bubbles per interval.
17-03-18 01:30:17.380 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:30:17.400 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 01:30:17.400 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 01:30:17.450 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:30:17.470 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:30:17.470 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:30:17.570 -07 000000610 INF: =================== Cycle #88, Pumping Reagent PR2 (3) ===================
17-03-18 01:30:17.570 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 01:30:17.570 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:30:17.600 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 01:30:17.600 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 01:30:17.600 -07 000000610 INF: =================== Cycle #88, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:30:17.730 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 01:30:17.770 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:30:18.640 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:30:18.710 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:30:18.710 -07 000000610 INF: LanePump: Waited 939 ms for pump motion to complete
17-03-18 01:30:18.710 -07 000000610 INF: =================== Cycle #88, Pumping Reagent PR2 (3) ===================
17-03-18 01:30:18.840 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:30:18.870 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 01:30:18.870 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 01:30:19.000 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:30:19.010 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 3.990831,
17-03-18 01:30:19.030 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 01:30:19.030 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 01:30:19.030 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:30:19.160 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:30:19.190 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:30:19.620 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:30:19.650 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:30:19.650 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:30:19.650 -07 000000610 INF: =================== Cycle #88 ===================
17-03-18 01:30:19.650 -07 000000610 INF: =================== Cycle #88, Flow Cell Temp 65° ===================
17-03-18 01:30:19.650 -07 000000610 INF: =================== Cycle #88, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 01:30:19.650 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 01:30:19.650 -07 000000424 INF: FPGA: Recv TEC2TEMP 
17-03-18 01:30:19.660 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:30:19.660 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 01:30:19.660 -07 000000424 INF: FPGA: Recv TEC2EN 
17-03-18 01:30:19.670 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:30:19.670 -07 000000610 INF: =================== Cycle #88, Flow Cell Temp 65° ===================
17-03-18 01:30:19.670 -07 000000610 INF: =================== Cycle #88 ===================
17-03-18 01:30:19.670 -07 000000610 INF: WaitCommand(30000) start
17-03-18 01:30:22.270 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 01:30:22.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1448, Total=2843. Warn if over 250 bubbles per interval.
17-03-18 01:30:24.380 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 3.985358,
17-03-18 01:30:27.270 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:30:27.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1448, Total=2843. Warn if over 250 bubbles per interval.
17-03-18 01:30:29.760 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.004458,
17-03-18 01:30:32.270 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:30:32.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1448, Total=2843. Warn if over 250 bubbles per interval.
17-03-18 01:30:35.740 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.012614,
17-03-18 01:30:37.270 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 01:30:37.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:30:41.100 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 3.99219,
17-03-18 01:30:42.270 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:30:42.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:30:46.460 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.026244,
17-03-18 01:30:47.270 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:30:47.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:30:49.680 -07 000000610 INF: WaitCommand(30000) end
17-03-18 01:30:49.680 -07 000000610 INF: =================== Cycle #88, Pumping Reagent PR2 (3) ===================
17-03-18 01:30:49.680 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 01:30:49.780 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:30:49.810 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 01:30:49.810 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 01:30:49.810 -07 000000610 INF: =================== Cycle #88, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:30:49.940 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 01:30:49.980 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:30:50.520 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:30:50.550 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:30:50.550 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-18 01:30:50.550 -07 000000610 INF: =================== Cycle #88, Pumping Reagent PR2 (3) ===================
17-03-18 01:30:50.680 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:30:50.710 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 01:30:50.710 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 01:30:50.840 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:30:50.870 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 01:30:50.870 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 01:30:50.870 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:30:51.000 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:30:51.030 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:30:51.460 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:30:51.490 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:30:51.490 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:30:51.490 -07 000000610 INF: =================== Cycle #88 ===================
17-03-18 01:30:51.490 -07 000000487 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:30:51.490 -07 000000487 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 01:30:52.210 -07 000000467 INF: WaitCommand(30000) start
17-03-18 01:30:52.710 -07 000000487 INF: AsyncDelayTimer waited 1216ms
17-03-18 01:30:52.710 -07 000000487 INF: LanePump: Xmit /1?\r
17-03-18 01:30:53.210 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:30:53.210 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:30:53.220 -07 000000487 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 01:30:53.220 -07 000000487 INF: LanePump: Current Position of Pump is: 1920
17-03-18 01:30:53.350 -07 000000487 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 01:30:53.390 -07 000000487 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:30:53.520 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.011254,
17-03-18 01:30:55.730 -07 000000487 INF: LanePump: Xmit /1Q\r
17-03-18 01:30:55.760 -07 000000487 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:30:56.180 -07 000000487 INF: LanePump: Xmit /1Q\r
17-03-18 01:30:56.210 -07 000000487 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:30:56.210 -07 000000487 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 01:30:56.210 -07 000000487 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:30:56.210 -07 000000487 INF: ===================  ===================
17-03-18 01:30:57.270 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:30:57.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:30:58.880 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.003063,
17-03-18 01:31:02.270 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:31:02.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:31:04.240 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.007176,
17-03-18 01:31:07.270 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:31:07.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:31:09.600 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.007176,
17-03-18 01:31:12.270 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:31:12.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:31:14.960 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.004458,
17-03-18 01:31:17.270 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:31:17.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:31:20.320 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.016692,
17-03-18 01:31:22.220 -07 000000467 INF: WaitCommand(30000) end
17-03-18 01:31:22.220 -07 000000610 INF: =================== Cycle #88, Flow Cell Temp 22° ===================
17-03-18 01:31:22.220 -07 000000610 INF: =================== Cycle #88, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 01:31:22.220 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 01:31:22.220 -07 000000467 INF: FPGA: Recv TEC2TEMP 
17-03-18 01:31:22.230 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:31:22.230 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 01:31:22.230 -07 000000467 INF: FPGA: Recv TEC2EN 
17-03-18 01:31:22.240 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:22.240 -07 000000610 INF: =================== Cycle #88, Flow Cell Temp 22° ===================
17-03-18 01:31:22.240 -07 000000610 INF: =================== Cycle #88 ===================
17-03-18 01:31:22.240 -07 000000610 INF: =================== Cycle #88, Pumping Reagent PR2 (3) ===================
17-03-18 01:31:22.240 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 01:31:22.270 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:31:22.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:31:22.340 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:31:22.370 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 01:31:22.370 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 01:31:22.370 -07 000000610 INF: =================== Cycle #88, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:31:22.500 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 01:31:22.540 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:31:25.670 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:31:25.680 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 3.983999,
17-03-18 01:31:25.700 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:31:26.120 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:31:26.150 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:31:26.570 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:31:26.600 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:31:26.600 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 01:31:26.600 -07 000000610 INF: =================== Cycle #88, Pumping Reagent PR2 (3) ===================
17-03-18 01:31:26.730 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:31:26.760 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:31:26.760 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:31:26.890 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:31:26.920 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:31:26.920 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:31:26.920 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:31:27.050 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:31:27.080 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:31:27.270 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:31:27.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:31:27.510 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:31:27.540 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:31:27.540 -07 000000610 INF: LanePump: Waited 458 ms for pump motion to complete
17-03-18 01:31:27.540 -07 000000610 INF: =================== Cycle #88 ===================
17-03-18 01:31:28.760 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 01:31:28.760 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 01:31:28.760 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:31:28.780 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:31:28.780 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 01:31:28.780 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 01:31:28.930 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:31:28.950 -07 000000610 INF: ReagentValve: Recv 00E2\r
17-03-18 01:31:28.950 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 226 steps, expected 204. Error = 22 steps (10.8%)
17-03-18 01:31:29.000 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:31:29.020 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 01:31:29.020 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:31:29.120 -07 000000610 INF: =================== Cycle #88, Pumping Reagent USM (2) ===================
17-03-18 01:31:29.120 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 01:31:29.120 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:31:29.150 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:31:29.150 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:31:29.150 -07 000000610 INF: =================== Cycle #88, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 01:31:29.280 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 01:31:29.320 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:31:30.760 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:31:30.790 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:31:31.040 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 3.960826,
17-03-18 01:31:31.210 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:31:31.240 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:31:31.240 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-18 01:31:31.240 -07 000000610 INF: =================== Cycle #88, Pumping Reagent USM (2) ===================
17-03-18 01:31:31.370 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:31:31.400 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:31:31.400 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:31:31.530 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:31:31.560 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:31:31.560 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:31:31.560 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:31:31.690 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:31:31.720 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:31:32.150 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:31:32.180 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:31:32.180 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:31:32.180 -07 000000610 INF: =================== Cycle #88 ===================
17-03-18 01:31:32.270 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:31:32.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:31:33.400 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:31:33.400 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:31:33.400 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:31:33.420 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 01:31:33.420 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 01:31:33.420 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 01:31:33.570 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:31:33.590 -07 000000610 INF: ReagentValve: Recv 00E2\r
17-03-18 01:31:33.590 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 226 steps, expected 204. Error = 22 steps (10.8%)
17-03-18 01:31:33.640 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:31:33.660 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:31:33.660 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:31:33.760 -07 000000610 INF: =================== Cycle #88, Pumping Reagent PR2 (3) ===================
17-03-18 01:31:33.760 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 01:31:33.760 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:31:33.790 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:31:33.790 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:31:33.790 -07 000000610 INF: =================== Cycle #88, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:31:33.920 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 01:31:33.960 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:31:34.830 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:31:34.860 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:31:34.860 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 01:31:34.860 -07 000000610 INF: =================== Cycle #88, Pumping Reagent PR2 (3) ===================
17-03-18 01:31:34.990 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:31:35.020 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:31:35.020 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:31:35.150 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:31:35.180 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:31:35.180 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:31:35.180 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:31:35.310 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:31:35.340 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:31:35.770 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:31:35.800 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:31:35.800 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:31:35.800 -07 000000610 INF: =================== Cycle #88 ===================
17-03-18 01:31:35.800 -07 000000591 INF: WaitCommand(10000) start
17-03-18 01:31:35.800 -07 000000502 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:31:35.800 -07 000000502 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 01:31:36.870 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 3.975845,
17-03-18 01:31:37.020 -07 000000502 INF: AsyncDelayTimer waited 1216ms
17-03-18 01:31:37.020 -07 000000502 INF: LanePump: Xmit /1?\r
17-03-18 01:31:37.050 -07 000000502 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:31:37.050 -07 000000502 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:31:37.180 -07 000000502 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 01:31:37.220 -07 000000502 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:31:37.270 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:31:37.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:31:38.750 -07 000000502 INF: LanePump: Xmit /1Q\r
17-03-18 01:31:38.780 -07 000000502 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:31:39.200 -07 000000502 INF: LanePump: Xmit /1Q\r
17-03-18 01:31:39.230 -07 000000502 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:31:39.230 -07 000000502 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 01:31:39.230 -07 000000502 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:31:39.230 -07 000000502 INF: ===================  ===================
17-03-18 01:31:42.230 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 3.994908,
17-03-18 01:31:42.270 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:31:42.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:31:45.810 -07 000000591 INF: WaitCommand(10000) end
17-03-18 01:31:45.810 -07 000000610 INF: =================== Cycle #88, Imaging ===================
17-03-18 01:31:45.810 -07 000000610 INF: Imaging Cycle 88: ScanTilesCommand Cycle 88 time start.
17-03-18 01:31:45.810 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 01:31:45.810 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:31:45.840 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:31:45.840 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 01:31:45.840 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 01:31:46.140 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:31:46.160 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 01:31:46.160 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 01:31:46.210 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:31:46.230 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 01:31:46.230 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:31:46.230 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:31:46.230 -07 000000467 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 01:31:46.230 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:31:46.230 -07 000000467 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 01:31:46.240 -07 000000590 INF: FPGA: Recv EXLED1ON 
17-03-18 01:31:46.240 -07 000000467 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:31:46.240 -07 000000467 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 01:31:46.240 -07 000000591 INF: FPGA: Recv EXLED1ADCR 23094
17-03-18 01:31:46.250 -07 000000467 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:46.250 -07 000000467 INF: RedLED: Using Red data: Photodiode ADC 23094 --> 7.4 mW (old method), or 204.7 mW (new method). Difference = 197.3 mW
17-03-18 01:31:46.250 -07 000000467 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 01:31:46.250 -07 000000626 INF: FPGA: Recv EXLED1OFF 
17-03-18 01:31:46.260 -07 000000467 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:46.260 -07 000000467 INF: RedLED: LED was on for 20 ms
17-03-18 01:31:46.260 -07 000000467 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-18 01:31:46.260 -07 000000467 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 01:31:46.260 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:31:46.260 -07 000000467 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 01:31:46.260 -07 000000611 INF: FPGA: Recv EXLED2ON 
17-03-18 01:31:46.270 -07 000000467 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:31:46.270 -07 000000467 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 01:31:46.270 -07 000000502 INF: FPGA: Recv EXLED1ADCR 2096
17-03-18 01:31:46.280 -07 000000467 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:46.280 -07 000000467 INF: GreenLED: Using Green data: Photodiode ADC 2096 --> 0.9 mW (old method), or 182.2 mW (new method). Difference = 181.2 mW
17-03-18 01:31:46.280 -07 000000467 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 01:31:46.280 -07 000000479 INF: FPGA: Recv EXLED2OFF 
17-03-18 01:31:46.290 -07 000000467 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:46.290 -07 000000467 INF: GreenLED: LED was on for 19 ms
17-03-18 01:31:46.290 -07 000000467 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 01:31:46.290 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 01:31:46.290 -07 000000502 INF: FPGA: Recv EMCUR 
17-03-18 01:31:46.300 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:31:46.300 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 01:31:46.800 -07 000000590 INF: FPGA: Recv EMOUT
17-03-18 01:31:46.800 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 01:31:46.800 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 01:31:46.800 -07 000000591 INF: FPGA: Recv EMCUR 
17-03-18 01:31:46.810 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:31:46.810 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:31:46.810 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38427734375, Z-Position -0.126400656697241. ------
17-03-18 01:31:46.810 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:31:46.810 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17856 mm
17-03-18 01:31:46.810 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:31:46.810 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 01:31:46.810 -07 000000611 INF: Y Motor: Moving to 59.9126 mm, started at 75.3843 mm, delta = -15.4717 mm
17-03-18 01:31:46.810 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 39006, sync = True, waitForSettling = False)
17-03-18 01:31:46.810 -07 000000512 INF: Z Motor: Moving to -0.178558 mm, started at -0.126401 mm, distance = -52.16 um
17-03-18 01:31:46.810 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:31:46.820 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:31:46.820 -07 000000512 INF: FPGA: Xmit ZDACW 39006\n [Z Motor]
17-03-18 01:31:46.820 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:31:46.830 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:31:46.830 -07 000000512 INF: FPGA: 'ZDACW 39006' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:31:46.830 -07 000000479 INF: FPGA: Recv YRDPOS 154387
17-03-18 01:31:46.840 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 01:31:46.840 -07 000000611 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:31:46.840 -07 000000611 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 01:31:46.840 -07 000000611 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 01:31:46.840 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:31:46.850 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:31:46.850 -07 000000591 INF: FPGA: Recv ZDACR 39006
17-03-18 01:31:46.860 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:31:46.860 -07 000000512 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 01:31:46.860 -07 000000611 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 01:31:47.040 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:31:47.040 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 196 ms to get response, and 226 ms overall
17-03-18 01:31:47.270 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:31:47.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:31:47.590 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 3.999021,
17-03-18 01:31:48.540 -07 000000512 INF: FPGA: Recv YMVTO 122703 24782
17-03-18 01:31:48.540 -07 000000611 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1677 ms to get response, and 1707 ms overall
17-03-18 01:31:48.540 -07 000000611 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 01:31:48.540 -07 000000611 INF: Y Motor: To move from 75.384 to 59.913 (-15.472 mm) should take 24755 steps, but required 24782 steps (15.489 mm). Slippage = 0.017 mm (0.00%).
17-03-18 01:31:48.540 -07 000000611 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1707 ms, distance = 15.472 mm, average velocity = 9.064 mm/sec
17-03-18 01:31:51.390 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:31:51.390 -07 000000512 INF: FPGA: Recv YRDPOS 122697
17-03-18 01:31:51.400 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:31:51.400 -07 000000611 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:31:51.420 -07 000000611 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:31:51.420 -07 000000611 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 01:31:51.420 -07 000000611 INF: Y Motor: Moved to 59.9106 after 4609 ms
17-03-18 01:31:51.430 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178558 mm (DAC = 39006)
17-03-18 01:31:51.430 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:51.430 -07 000000512 INF: FPGA: Recv ZSGSRD 37084
17-03-18 01:31:51.440 -07 000000467 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:51.440 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:51.440 -07 000000512 INF: FPGA: Recv ZSGSRD 37090
17-03-18 01:31:51.450 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:51.450 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:51.450 -07 000000611 INF: FPGA: Recv ZSGSRD 37086
17-03-18 01:31:51.460 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:51.460 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:51.460 -07 000000611 INF: FPGA: Recv ZSGSRD 37081
17-03-18 01:31:51.470 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:51.470 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:51.470 -07 000000611 INF: FPGA: Recv ZSGSRD 37085
17-03-18 01:31:51.480 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:51.480 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:51.480 -07 000000611 INF: FPGA: Recv ZSGSRD 37084
17-03-18 01:31:51.490 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:51.490 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:51.490 -07 000000611 INF: FPGA: Recv ZSGSRD 37086
17-03-18 01:31:51.500 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:51.500 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:51.500 -07 000000611 INF: FPGA: Recv ZSGSRD 37087
17-03-18 01:31:51.510 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:51.510 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:51.510 -07 000000611 INF: FPGA: Recv ZSGSRD 37086
17-03-18 01:31:51.520 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:51.520 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:51.520 -07 000000512 INF: FPGA: Recv ZSGSRD 37093
17-03-18 01:31:51.530 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:51.530 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:31:51.530 -07 000000576 INF: FPGA: Recv ZPIEZORD 33296
17-03-18 01:31:51.540 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:51.540 -07 000000467 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.952 V. Piezo Error = -8.4 V.
17-03-18 01:31:51.540 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.6 um, Read 10 ADC samples: Avg = 37086 (-177.7 uncal um), Error = 0.9 uncal um, Median = 37086 (-177.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37081 (-177.6 uncal um), Max = 37093 (-177.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:31:51.540 -07 000000467 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37086, posNoise = 7, negNoise = 5
17-03-18 01:31:51.540 -07 000000467 INF: Z Motor: After move to -0.178558, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:31:51.540 -07 000000467 INF: Z Motor: Settle wait time = 4612 ms, measure time = 110 ms (allowed 150 ms), total time = 4722 ms
17-03-18 01:31:51.540 -07 000000467 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:31:51.580 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4764 ms
17-03-18 01:31:51.580 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:31:51.580 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:31:51.580 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:31:51.580 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:31:51.580 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:31:51.580 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:31:51.580 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:31:51.590 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:31:51.590 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 01:31:51.610 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 01:31:51.610 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:31:51.610 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 01:31:51.610 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:31:51.630 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:31:51.630 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 01:31:51.630 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:31:51.670 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:31:51.970 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:31:51.970 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:31:51.970 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:31:51.970 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 01:31:52.010 -07 000000576 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:31:52.010 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 01:31:52.010 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 01:31:52.100 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:31:52.100 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:31:52.100 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:31:52.100 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:31:52.210 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:31:52.210 -07 000000611 INF: Image SNR check: start
17-03-18 01:31:52.210 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:31:52.220 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:31:52.220 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:31:52.220 -07 000000611 INF: Image SNR check: pass  [peak (Max-Min)=147.33]
17-03-18 01:31:52.220 -07 000000611 INF: Autofocus start
17-03-18 01:31:52.220 -07 000000611 INF: MeasureProfile start
17-03-18 01:31:52.240 -07 000000611 INF: MeasureProfile done
17-03-18 01:31:52.240 -07 000000611 INF: X=48  Z correction [um]=0.1739867
17-03-18 01:31:52.240 -07 000000611 INF: Autofocus finished
17-03-18 01:31:52.270 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:31:52.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:31:52.420 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:31:52.420 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:31:52.420 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.178571683500482. ----------
17-03-18 01:31:52.420 -07 000000610 INF: Cycle	88	Tile	1	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:31:52.430 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37556, sync = True, waitForSettling = True)
17-03-18 01:31:52.430 -07 000000610 INF: Z Motor: Moving to -0.171920 mm, started at -0.178572 mm, distance = 6.65 um
17-03-18 01:31:52.430 -07 000000610 INF: FPGA: Xmit ZDACW 37556\n [Z Motor]
17-03-18 01:31:52.430 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 01:31:52.440 -07 000000610 INF: FPGA: 'ZDACW 37556' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:31:52.440 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:31:52.440 -07 000000479 INF: FPGA: Recv ZDACR 37556
17-03-18 01:31:52.450 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:52.450 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:31:52.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:52.600 -07 000000611 INF: FPGA: Recv ZSGSRD 36053
17-03-18 01:31:52.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:31:52.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:52.610 -07 000000611 INF: FPGA: Recv ZSGSRD 36053
17-03-18 01:31:52.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:52.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:52.620 -07 000000590 INF: FPGA: Recv ZSGSRD 36050
17-03-18 01:31:52.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:52.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:52.640 -07 000000591 INF: FPGA: Recv ZSGSRD 36054
17-03-18 01:31:52.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:31:52.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:52.650 -07 000000611 INF: FPGA: Recv ZSGSRD 36054
17-03-18 01:31:52.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:52.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:52.660 -07 000000576 INF: FPGA: Recv ZSGSRD 36047
17-03-18 01:31:52.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:52.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:52.670 -07 000000611 INF: FPGA: Recv ZSGSRD 36053
17-03-18 01:31:52.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:52.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:52.680 -07 000000467 INF: FPGA: Recv ZSGSRD 36055
17-03-18 01:31:52.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:52.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:52.690 -07 000000591 INF: FPGA: Recv ZSGSRD 36052
17-03-18 01:31:52.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:52.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:52.700 -07 000000467 INF: FPGA: Recv ZSGSRD 36056
17-03-18 01:31:52.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:52.710 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:31:52.710 -07 000000591 INF: FPGA: Recv ZPIEZORD 31944
17-03-18 01:31:52.720 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:52.720 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.731 V. Piezo Error = -9.1 V.
17-03-18 01:31:52.720 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.9 um, Read 10 ADC samples: Avg = 36053 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36053 (-171.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36047 (-171.0 uncal um), Max = 36056 (-171.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:31:52.720 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36053, posNoise = 3, negNoise = 6
17-03-18 01:31:52.720 -07 000000610 INF: Z Motor: After move to -0.171920, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:31:52.720 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 01:31:52.720 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:31:52.720 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:31:52.720 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:31:52.720 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:31:52.720 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:31:52.720 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:31:52.720 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:31:52.720 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:31:52.720 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:31:52.720 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:31:52.720 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:31:52.720 -07 000000479 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 01:31:52.730 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:31:52.730 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:31:52.740 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 01:31:52.740 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:31:52.750 -07 000000479 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 23 ms.
17-03-18 01:31:52.750 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:31:52.750 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:31:52.750 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:31:52.760 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 01:31:52.760 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-18 01:31:52.760 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37733 150\n [Camera]
17-03-18 01:31:52.950 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.001704,
17-03-18 01:31:52.960 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:31:53.350 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:31:53.350 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:31:53.360 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:31:53.360 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:31:53.360 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 01:31:53.360 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:31:53.360 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:31:53.360 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:31:53.360 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:31:53.360 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 01:31:53.550 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37733 775
17-03-18 01:31:53.700 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:31:53.760 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:31:53.760 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:31:53.760 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:31:53.760 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:31:53.760 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:31:53.760 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:31:53.770 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 01:31:53.770 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 01:31:53.770 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 01:31:53.770 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 01:31:53.880 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:31:53.880 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:31:53.890 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:31:53.890 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:31:53.890 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 01:31:53.890 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:31:53.890 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:31:53.890 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:31:53.890 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:31:53.890 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 01:31:54.270 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 01:31:54.270 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 01:31:54.270 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:31:54.280 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 01:31:54.280 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 01:31:54.280 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:31:54.280 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 01:31:54.280 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:31:54.280 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:31:54.290 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:31:54.290 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:31:54.290 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:31:54.290 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37733 150' command took 2 ms to send, 1518 ms to get response, and 1530 ms overall
17-03-18 01:31:54.300 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.171954
17-03-18 01:31:54.300 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17195 mm
17-03-18 01:31:54.300 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:31:54.300 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 37563, sync = True, waitForSettling = False)
17-03-18 01:31:54.300 -07 000000512 INF: Z Motor: Moving to -0.171952 mm, started at -0.171935 mm, distance = -0.02 um
17-03-18 01:31:54.300 -07 000000512 INF: FPGA: Xmit ZDACW 37563\n [Z Motor]
17-03-18 01:31:54.300 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 01:31:54.300 -07 000000590 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-18 01:31:54.310 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:31:55.210 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 01:31:55.220 -07 000000502 INF: FPGA: Recv YRDPOS 122697
17-03-18 01:31:55.220 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 906 ms to get response, and 919 ms overall
17-03-18 01:31:55.220 -07 000000590 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:31:55.220 -07 000000590 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:31:55.220 -07 000000590 INF: Y Motor: Moving 1331 steps2
17-03-18 01:31:55.220 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:31:55.220 -07 000000512 INF: FPGA: 'ZDACW 37563' command took 0 ms to send, 916 ms to get response, and 920 ms overall
17-03-18 01:31:55.230 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:31:55.230 -07 000000502 INF: FPGA: Recv ZDACR 37563
17-03-18 01:31:55.240 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:31:55.240 -07 000000512 INF: Z Motor: MoveAbsStepped took 934 ms (did NOT wait for settling yet))
17-03-18 01:31:55.600 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 01:31:55.600 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 375 ms to get response, and 378 ms overall
17-03-18 01:31:55.640 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:31:55.640 -07 000000512 INF: FPGA: Recv YRDPOS 124381
17-03-18 01:31:55.650 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:31:55.650 -07 000000590 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:31:55.650 -07 000000590 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 01:31:55.650 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.832 mm, average velocity = 2.201 mm/sec
17-03-18 01:31:56.600 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:31:56.600 -07 000000502 INF: FPGA: Recv YRDPOS 124381
17-03-18 01:31:56.610 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:31:56.610 -07 000000590 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:31:56.630 -07 000000590 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:31:56.630 -07 000000590 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:31:56.630 -07 000000590 INF: Y Motor: Moved to 60.7329 after 2332 ms (table move)
17-03-18 01:31:56.640 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171952 mm (DAC = 37563)
17-03-18 01:31:56.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:56.640 -07 000000626 INF: FPGA: Recv ZSGSRD 36063
17-03-18 01:31:56.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:31:56.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:56.650 -07 000000590 INF: FPGA: Recv ZSGSRD 36062
17-03-18 01:31:56.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:56.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:56.660 -07 000000626 INF: FPGA: Recv ZSGSRD 36054
17-03-18 01:31:56.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:56.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:56.670 -07 000000590 INF: FPGA: Recv ZSGSRD 36051
17-03-18 01:31:56.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:56.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:56.680 -07 000000590 INF: FPGA: Recv ZSGSRD 36051
17-03-18 01:31:56.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:56.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:56.690 -07 000000512 INF: FPGA: Recv ZSGSRD 36063
17-03-18 01:31:56.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:56.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:56.700 -07 000000626 INF: FPGA: Recv ZSGSRD 36055
17-03-18 01:31:56.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:56.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:56.710 -07 000000512 INF: FPGA: Recv ZSGSRD 36054
17-03-18 01:31:56.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:56.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:56.720 -07 000000590 INF: FPGA: Recv ZSGSRD 36064
17-03-18 01:31:56.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:56.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:56.730 -07 000000626 INF: FPGA: Recv ZSGSRD 36060
17-03-18 01:31:56.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:56.740 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:31:56.740 -07 000000512 INF: FPGA: Recv ZPIEZORD 31937
17-03-18 01:31:56.750 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:56.750 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.732 V. Piezo Error = -9.1 V.
17-03-18 01:31:56.750 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36058 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36058 (-171.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36051 (-171.0 uncal um), Max = 36064 (-171.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:31:56.750 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36058, posNoise = 6, negNoise = 7
17-03-18 01:31:56.750 -07 000000610 INF: Z Motor: After move to -0.171952, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:31:56.750 -07 000000610 INF: Z Motor: Settle wait time = 2335 ms, measure time = 109 ms (allowed 150 ms), total time = 2444 ms
17-03-18 01:31:56.750 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:31:56.800 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2498 ms
17-03-18 01:31:56.800 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:31:56.800 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.171967593418752. ----------
17-03-18 01:31:56.800 -07 000000610 INF: Cycle	88	Tile	2	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:31:56.800 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37387, sync = True, waitForSettling = True)
17-03-18 01:31:56.800 -07 000000610 INF: Z Motor: Moving to -0.171147 mm, started at -0.171968 mm, distance = 0.82 um
17-03-18 01:31:56.800 -07 000000610 INF: FPGA: Xmit ZDACW 37387\n [Z Motor]
17-03-18 01:31:56.800 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 01:31:56.810 -07 000000610 INF: FPGA: 'ZDACW 37387' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:31:56.810 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:31:56.810 -07 000000479 INF: FPGA: Recv ZDACR 37387
17-03-18 01:31:56.820 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:31:56.820 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:31:56.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:56.970 -07 000000576 INF: FPGA: Recv ZSGSRD 35934
17-03-18 01:31:56.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:31:56.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:56.980 -07 000000512 INF: FPGA: Recv ZSGSRD 35932
17-03-18 01:31:56.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:56.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:56.990 -07 000000576 INF: FPGA: Recv ZSGSRD 35930
17-03-18 01:31:57.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:57.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:57.000 -07 000000512 INF: FPGA: Recv ZSGSRD 35930
17-03-18 01:31:57.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:57.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:57.010 -07 000000502 INF: FPGA: Recv ZSGSRD 35926
17-03-18 01:31:57.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:57.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:57.020 -07 000000512 INF: FPGA: Recv ZSGSRD 35938
17-03-18 01:31:57.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:57.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:57.030 -07 000000502 INF: FPGA: Recv ZSGSRD 35932
17-03-18 01:31:57.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:57.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:57.040 -07 000000512 INF: FPGA: Recv ZSGSRD 35929
17-03-18 01:31:57.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:57.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:57.050 -07 000000479 INF: FPGA: Recv ZSGSRD 35932
17-03-18 01:31:57.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:57.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:31:57.060 -07 000000626 INF: FPGA: Recv ZSGSRD 35934
17-03-18 01:31:57.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:57.070 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:31:57.070 -07 000000502 INF: FPGA: Recv ZPIEZORD 31771
17-03-18 01:31:57.080 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:31:57.080 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.705 V. Piezo Error = -9.2 V.
17-03-18 01:31:57.080 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35932 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35932 (-170.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35926 (-170.2 uncal um), Max = 35938 (-170.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:31:57.080 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35932, posNoise = 6, negNoise = 6
17-03-18 01:31:57.080 -07 000000610 INF: Z Motor: After move to -0.171147, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:31:57.080 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 01:31:57.080 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:31:57.080 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:31:57.080 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:31:57.080 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:31:57.080 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:31:57.080 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:31:57.080 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:31:57.080 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:31:57.080 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:31:57.080 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:31:57.080 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:31:57.080 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:31:57.090 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:31:57.090 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:31:57.090 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:31:57.090 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:31:57.100 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:31:57.100 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:31:57.100 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:31:57.100 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:31:57.110 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37563 150\n [Camera]
17-03-18 01:31:57.270 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:31:57.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:31:57.300 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:31:57.700 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:31:57.700 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:31:57.700 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:31:57.700 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:31:57.700 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:31:57.700 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:31:57.700 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-18 01:31:57.700 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:31:57.700 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:31:57.700 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-18 01:31:57.890 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37563 775
17-03-18 01:31:58.040 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:31:58.080 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 01:31:58.090 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 01:31:58.090 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:31:58.090 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:31:58.090 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 01:31:58.090 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 01:31:58.090 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:31:58.090 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:31:58.090 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:31:58.100 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:31:58.230 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:31:58.230 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:31:58.230 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:31:58.230 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:31:58.230 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 01:31:58.230 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:31:58.230 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:31:58.230 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:31:58.370 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:31:58.370 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 01:31:58.380 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.014009,
17-03-18 01:31:58.420 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:31:58.420 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:31:58.420 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37563 150' command took 2 ms to send, 1303 ms to get response, and 1312 ms overall
17-03-18 01:31:58.420 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:31:58.420 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.17115814268889. ------
17-03-18 01:31:58.420 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:31:58.420 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17780 mm
17-03-18 01:31:58.420 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:31:58.640 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 412 ms.
17-03-18 01:31:58.640 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 01:31:58.640 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:31:58.640 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:31:58.640 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-18 01:31:58.650 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 01:31:58.650 -07 000000591 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-18 01:31:58.650 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:31:58.770 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:31:58.770 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:31:58.770 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:31:58.770 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:31:58.780 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 547 ms.
17-03-18 01:31:58.790 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:31:58.790 -07 000000424 INF: FPGA: Recv YRDPOS 124381
17-03-18 01:31:58.790 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 361 ms to get response, and 363 ms overall
17-03-18 01:31:58.790 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 131 ms to get response, and 132 ms overall
17-03-18 01:31:58.790 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:31:58.790 -07 000000591 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:31:58.790 -07 000000591 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:31:58.790 -07 000000591 INF: Y Motor: Moving 1344 steps-20
17-03-18 01:31:58.790 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38841, sync = True, waitForSettling = False)
17-03-18 01:31:58.790 -07 000000424 INF: Z Motor: Moving to -0.177803 mm, started at -0.171158 mm, distance = -6.64 um
17-03-18 01:31:58.800 -07 000000424 INF: FPGA: Xmit ZDACW 38841\n [Z Motor]
17-03-18 01:31:58.810 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:31:59.480 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 01:31:59.480 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:31:59.480 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 01:31:59.480 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 660 ms to get response, and 688 ms overall
17-03-18 01:31:59.480 -07 000000424 INF: FPGA: 'ZDACW 38841' command took 0 ms to send, 670 ms to get response, and 687 ms overall
17-03-18 01:31:59.480 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:31:59.480 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 680 ms to get response, and 688 ms overall
17-03-18 01:31:59.480 -07 000000502 INF: FPGA: Recv ZDACR 38841
17-03-18 01:31:59.490 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:31:59.490 -07 000000424 INF: Z Motor: MoveAbsStepped took 698 ms (did NOT wait for settling yet))
17-03-18 01:31:59.530 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:31:59.540 -07 000000424 INF: FPGA: Recv YRDPOS 126082
17-03-18 01:31:59.540 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:31:59.540 -07 000000591 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:31:59.540 -07 000000591 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 01:31:59.540 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 688 ms, distance = 0.840 mm, average velocity = 1.220 mm/sec
17-03-18 01:32:00.490 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:00.490 -07 000000502 INF: FPGA: Recv YRDPOS 126083
17-03-18 01:32:00.500 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:00.500 -07 000000591 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:00.520 -07 000000591 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:32:00.520 -07 000000591 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:32:00.520 -07 000000591 INF: Y Motor: Moved to 61.5640 after 1866 ms (table move)
17-03-18 01:32:00.530 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177803 mm (DAC = 38841)
17-03-18 01:32:00.530 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:00.530 -07 000000424 INF: FPGA: Recv ZSGSRD 36971
17-03-18 01:32:00.540 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:00.540 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:00.540 -07 000000591 INF: FPGA: Recv ZSGSRD 36965
17-03-18 01:32:00.550 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:00.550 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:00.550 -07 000000424 INF: FPGA: Recv ZSGSRD 36961
17-03-18 01:32:00.560 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:00.560 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:00.560 -07 000000502 INF: FPGA: Recv ZSGSRD 36975
17-03-18 01:32:00.570 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:00.580 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:00.580 -07 000000591 INF: FPGA: Recv ZSGSRD 36968
17-03-18 01:32:00.590 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:32:00.590 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:00.590 -07 000000502 INF: FPGA: Recv ZSGSRD 36968
17-03-18 01:32:00.600 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:00.600 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:00.600 -07 000000576 INF: FPGA: Recv ZSGSRD 36973
17-03-18 01:32:00.610 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:00.610 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:00.610 -07 000000424 INF: FPGA: Recv ZSGSRD 36964
17-03-18 01:32:00.620 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:00.620 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:00.620 -07 000000591 INF: FPGA: Recv ZSGSRD 36967
17-03-18 01:32:00.630 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:00.630 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:00.630 -07 000000424 INF: FPGA: Recv ZSGSRD 36963
17-03-18 01:32:00.640 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:00.640 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:00.640 -07 000000591 INF: FPGA: Recv ZPIEZORD 33125
17-03-18 01:32:00.650 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:00.650 -07 000000479 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.927 V. Piezo Error = -8.5 V.
17-03-18 01:32:00.650 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36968 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36968 (-176.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36961 (-176.9 uncal um), Max = 36975 (-177.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:32:00.650 -07 000000479 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36968, posNoise = 7, negNoise = 7
17-03-18 01:32:00.650 -07 000000479 INF: Z Motor: After move to -0.177803, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:00.650 -07 000000479 INF: Z Motor: Settle wait time = 1736 ms, measure time = 121 ms (allowed 150 ms), total time = 1857 ms
17-03-18 01:32:00.650 -07 000000479 INF: Z Motor: Waiting extra 29 ms after reading position to reach expected total of 150 ms
17-03-18 01:32:00.680 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2252 ms
17-03-18 01:32:00.680 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:32:00.680 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:32:00.680 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:32:00.680 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:32:00.680 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:32:00.680 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:32:00.680 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:32:00.680 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:32:00.680 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:32:00.690 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:32:00.690 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:32:00.700 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:32:00.700 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:32:00.700 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:32:00.750 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:32:01.050 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:32:01.050 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:32:01.050 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:32:01.050 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-18 01:32:01.090 -07 000000576 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:32:01.090 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 01:32:01.090 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 01:32:01.180 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:32:01.180 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:01.180 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:32:01.180 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:32:01.190 -07 000000626 INF: Autofocus start
17-03-18 01:32:01.190 -07 000000626 INF: MeasureProfile start
17-03-18 01:32:01.190 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:32:01.190 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:32:01.200 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:32:01.200 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:32:01.200 -07 000000626 INF: MeasureProfile done
17-03-18 01:32:01.200 -07 000000626 INF: X=0  Z correction [um]=-0.0713522
17-03-18 01:32:01.200 -07 000000626 INF: Autofocus finished
17-03-18 01:32:01.400 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:32:01.400 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:32:01.400 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.177813626467754. ----------
17-03-18 01:32:01.400 -07 000000610 INF: Cycle	88	Tile	3	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:32:01.410 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37338, sync = True, waitForSettling = True)
17-03-18 01:32:01.410 -07 000000610 INF: Z Motor: Moving to -0.170922 mm, started at -0.177814 mm, distance = 6.89 um
17-03-18 01:32:01.410 -07 000000610 INF: FPGA: Xmit ZDACW 37338\n [Z Motor]
17-03-18 01:32:01.410 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:32:01.420 -07 000000610 INF: FPGA: 'ZDACW 37338' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:32:01.420 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:01.420 -07 000000576 INF: FPGA: Recv ZDACR 37338
17-03-18 01:32:01.430 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:01.430 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:32:01.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:01.580 -07 000000424 INF: FPGA: Recv ZSGSRD 35897
17-03-18 01:32:01.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:01.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:01.590 -07 000000479 INF: FPGA: Recv ZSGSRD 35896
17-03-18 01:32:01.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:01.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:01.600 -07 000000626 INF: FPGA: Recv ZSGSRD 35897
17-03-18 01:32:01.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:01.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:01.610 -07 000000591 INF: FPGA: Recv ZSGSRD 35901
17-03-18 01:32:01.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:01.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:01.620 -07 000000502 INF: FPGA: Recv ZSGSRD 35902
17-03-18 01:32:01.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:01.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:01.630 -07 000000591 INF: FPGA: Recv ZSGSRD 35897
17-03-18 01:32:01.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:01.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:01.640 -07 000000626 INF: FPGA: Recv ZSGSRD 35893
17-03-18 01:32:01.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:01.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:01.650 -07 000000479 INF: FPGA: Recv ZSGSRD 35897
17-03-18 01:32:01.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:01.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:01.660 -07 000000502 INF: FPGA: Recv ZSGSRD 35895
17-03-18 01:32:01.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:01.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:01.670 -07 000000479 INF: FPGA: Recv ZSGSRD 35894
17-03-18 01:32:01.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:01.680 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:01.680 -07 000000626 INF: FPGA: Recv ZPIEZORD 31698
17-03-18 01:32:01.690 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:01.690 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.697 V. Piezo Error = -9.3 V.
17-03-18 01:32:01.690 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35897 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35897 (-170.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35893 (-170.0 uncal um), Max = 35902 (-170.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:32:01.690 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35897, posNoise = 5, negNoise = 4
17-03-18 01:32:01.690 -07 000000610 INF: Z Motor: After move to -0.170922, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:01.690 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:32:01.690 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:32:01.690 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:32:01.690 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:32:01.690 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:32:01.690 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:32:01.690 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:32:01.690 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:32:01.690 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:32:01.690 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:32:01.690 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:32:01.690 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:32:01.690 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:32:01.700 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:32:01.700 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:32:01.700 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:32:01.700 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:32:01.710 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:32:01.710 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:32:01.710 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:32:01.710 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:32:01.720 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37515 150\n [Camera]
17-03-18 01:32:01.920 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:32:02.270 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:32:02.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:32:02.310 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:32:02.310 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:32:02.310 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:32:02.310 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:32:02.310 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:02.310 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:02.320 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:02.320 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:02.320 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1428998304, 0x0, 418435064) start.
17-03-18 01:32:02.320 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1393576040, 0x0, 391868352) start.
17-03-18 01:32:02.500 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37515 775
17-03-18 01:32:02.650 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:32:02.700 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1428998304, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 01:32:02.700 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 01:32:02.700 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:02.710 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:32:02.710 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:32:02.710 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1393576040, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 01:32:02.710 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 01:32:02.710 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:02.720 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:32:02.720 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:32:02.840 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:32:02.840 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:32:02.840 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:02.840 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:32:02.840 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:32:02.840 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:02.960 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:02.960 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1464420568, 0x0, 391868352) start.
17-03-18 01:32:02.970 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:02.970 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 01:32:03.030 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:32:03.030 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:32:03.030 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37515 150' command took 2 ms to send, 1304 ms to get response, and 1313 ms overall
17-03-18 01:32:03.030 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.171198
17-03-18 01:32:03.030 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17120 mm
17-03-18 01:32:03.030 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:32:03.030 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 01:32:03.030 -07 000000502 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-18 01:32:03.030 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:03.030 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 37398, sync = True, waitForSettling = False)
17-03-18 01:32:03.030 -07 000000561 INF: Z Motor: Moving to -0.171197 mm, started at -0.170933 mm, distance = -0.26 um
17-03-18 01:32:03.040 -07 000000561 INF: FPGA: Xmit ZDACW 37398\n [Z Motor]
17-03-18 01:32:03.040 -07 000000576 INF: FPGA: Recv YRDPOS 126083
17-03-18 01:32:03.040 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 01:32:03.040 -07 000000502 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:03.040 -07 000000502 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:32:03.040 -07 000000502 INF: Y Motor: Moving 1342 steps-19
17-03-18 01:32:03.040 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 01:32:03.050 -07 000000561 INF: FPGA: 'ZDACW 37398' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:03.050 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:03.050 -07 000000576 INF: FPGA: Recv ZDACR 37398
17-03-18 01:32:03.060 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:32:03.060 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:03.060 -07 000000561 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 01:32:03.370 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1464420568, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 01:32:03.370 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:32:03.370 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:03.370 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:32:03.370 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:32:03.370 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:03.370 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:03.370 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 531 ms.
17-03-18 01:32:03.370 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:03.380 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 535 ms.
17-03-18 01:32:03.430 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 01:32:03.430 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 01:32:03.480 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:03.480 -07 000000501 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:32:03.490 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:03.490 -07 000000502 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:03.490 -07 000000502 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 01:32:03.490 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.839 mm, average velocity = 2.118 mm/sec
17-03-18 01:32:03.740 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.018051,
17-03-18 01:32:04.440 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:04.440 -07 000000561 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:32:04.450 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:04.450 -07 000000502 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:04.470 -07 000000502 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:32:04.470 -07 000000502 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:32:04.470 -07 000000502 INF: Y Motor: Moved to 62.3955 after 1438 ms (table move)
17-03-18 01:32:04.470 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171197 mm (DAC = 37398)
17-03-18 01:32:04.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:04.480 -07 000000561 INF: FPGA: Recv ZSGSRD 35941
17-03-18 01:32:04.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:04.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:04.490 -07 000000591 INF: FPGA: Recv ZSGSRD 35944
17-03-18 01:32:04.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:04.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:04.500 -07 000000576 INF: FPGA: Recv ZSGSRD 35943
17-03-18 01:32:04.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:04.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:04.510 -07 000000576 INF: FPGA: Recv ZSGSRD 35942
17-03-18 01:32:04.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:04.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:04.520 -07 000000502 INF: FPGA: Recv ZSGSRD 35940
17-03-18 01:32:04.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:04.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:04.530 -07 000000576 INF: FPGA: Recv ZSGSRD 35934
17-03-18 01:32:04.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:04.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:04.540 -07 000000626 INF: FPGA: Recv ZSGSRD 35935
17-03-18 01:32:04.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:04.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:04.550 -07 000000591 INF: FPGA: Recv ZSGSRD 35937
17-03-18 01:32:04.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:04.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:04.560 -07 000000591 INF: FPGA: Recv ZSGSRD 35941
17-03-18 01:32:04.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:04.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:04.570 -07 000000576 INF: FPGA: Recv ZSGSRD 35943
17-03-18 01:32:04.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:04.580 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:04.580 -07 000000576 INF: FPGA: Recv ZPIEZORD 31802
17-03-18 01:32:04.590 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:04.590 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.707 V. Piezo Error = -9.1 V.
17-03-18 01:32:04.590 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35940 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35941 (-170.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35934 (-170.3 uncal um), Max = 35944 (-170.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:32:04.590 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35940, posNoise = 4, negNoise = 6
17-03-18 01:32:04.590 -07 000000610 INF: Z Motor: After move to -0.171197, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:04.590 -07 000000610 INF: Z Motor: Settle wait time = 1439 ms, measure time = 112 ms (allowed 150 ms), total time = 1551 ms
17-03-18 01:32:04.590 -07 000000610 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-18 01:32:04.630 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-18 01:32:04.630 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:32:04.630 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.171209536386024. ----------
17-03-18 01:32:04.630 -07 000000610 INF: Cycle	88	Tile	4	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:32:04.630 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37221, sync = True, waitForSettling = True)
17-03-18 01:32:04.630 -07 000000610 INF: Z Motor: Moving to -0.170387 mm, started at -0.171210 mm, distance = 0.82 um
17-03-18 01:32:04.630 -07 000000610 INF: FPGA: Xmit ZDACW 37221\n [Z Motor]
17-03-18 01:32:04.630 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:32:04.640 -07 000000610 INF: FPGA: 'ZDACW 37221' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:32:04.640 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:04.640 -07 000000502 INF: FPGA: Recv ZDACR 37221
17-03-18 01:32:04.650 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:04.650 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:32:04.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:04.800 -07 000000561 INF: FPGA: Recv ZSGSRD 35811
17-03-18 01:32:04.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:04.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:04.810 -07 000000576 INF: FPGA: Recv ZSGSRD 35823
17-03-18 01:32:04.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:04.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:04.820 -07 000000576 INF: FPGA: Recv ZSGSRD 35820
17-03-18 01:32:04.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:04.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:04.830 -07 000000561 INF: FPGA: Recv ZSGSRD 35811
17-03-18 01:32:04.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:04.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:04.840 -07 000000561 INF: FPGA: Recv ZSGSRD 35811
17-03-18 01:32:04.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:04.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:04.850 -07 000000561 INF: FPGA: Recv ZSGSRD 35816
17-03-18 01:32:04.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:04.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:04.860 -07 000000561 INF: FPGA: Recv ZSGSRD 35811
17-03-18 01:32:04.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:04.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:04.870 -07 000000561 INF: FPGA: Recv ZSGSRD 35810
17-03-18 01:32:04.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:04.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:04.880 -07 000000591 INF: FPGA: Recv ZSGSRD 35807
17-03-18 01:32:04.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:04.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:04.890 -07 000000626 INF: FPGA: Recv ZSGSRD 35820
17-03-18 01:32:04.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:04.900 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:04.900 -07 000000502 INF: FPGA: Recv ZPIEZORD 31637
17-03-18 01:32:04.910 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:04.910 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.680 V. Piezo Error = -9.2 V.
17-03-18 01:32:04.910 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35814 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35811 (-169.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35807 (-169.5 uncal um), Max = 35823 (-169.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:32:04.910 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35814, posNoise = 9, negNoise = 7
17-03-18 01:32:04.910 -07 000000610 INF: Z Motor: After move to -0.170387, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:04.910 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 01:32:04.910 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:32:04.910 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:32:04.910 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:32:04.910 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:32:04.910 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:32:04.910 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:32:04.910 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:32:04.910 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:32:04.910 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:32:04.910 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:32:04.910 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:32:04.910 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:32:04.920 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:32:04.920 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:32:04.920 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:32:04.920 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:32:04.930 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:32:04.930 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:32:04.930 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:32:04.930 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:32:04.930 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37398 150\n [Camera]
17-03-18 01:32:05.130 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:32:05.520 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:32:05.520 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:32:05.520 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:05.520 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:32:05.520 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:32:05.520 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:05.530 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:05.530 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-18 01:32:05.530 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:05.530 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:32:05.710 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37398 775
17-03-18 01:32:05.860 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 01:32:05.930 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 01:32:05.930 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:32:05.930 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:05.930 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 01:32:05.930 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:32:05.930 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:05.930 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:05.930 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 01:32:05.930 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:05.940 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 01:32:06.050 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:32:06.050 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:32:06.050 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:06.050 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:32:06.050 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:32:06.050 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:06.060 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:06.060 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 01:32:06.060 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:06.060 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 01:32:06.240 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:32:06.240 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:32:06.240 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37398 150' command took 2 ms to send, 1307 ms to get response, and 1313 ms overall
17-03-18 01:32:06.240 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.170977
17-03-18 01:32:06.240 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17098 mm
17-03-18 01:32:06.240 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:32:06.250 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 01:32:06.250 -07 000000611 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 01:32:06.250 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 37350, sync = True, waitForSettling = False)
17-03-18 01:32:06.250 -07 000000561 INF: Z Motor: Moving to -0.170977 mm, started at -0.170400 mm, distance = -0.58 um
17-03-18 01:32:06.270 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:06.270 -07 000000591 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:32:06.280 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 01:32:06.280 -07 000000611 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:06.280 -07 000000611 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:32:06.280 -07 000000611 INF: Y Motor: Moving 1339 steps-15
17-03-18 01:32:06.280 -07 000000561 INF: FPGA: Xmit ZDACW 37350\n [Z Motor]
17-03-18 01:32:06.280 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:32:06.290 -07 000000561 INF: FPGA: 'ZDACW 37350' command took 3 ms to send, 0 ms to get response, and 37 ms overall
17-03-18 01:32:06.300 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:32:06.310 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:06.310 -07 000000512 INF: FPGA: Recv ZDACR 37350
17-03-18 01:32:06.320 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:32:06.320 -07 000000561 INF: Z Motor: MoveAbsStepped took 67 ms (did NOT wait for settling yet))
17-03-18 01:32:06.460 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:32:06.460 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:32:06.460 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:06.460 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 01:32:06.460 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:32:06.460 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:06.460 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:06.460 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 01:32:06.460 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:06.470 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 01:32:06.670 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 01:32:06.670 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 01:32:06.720 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:06.720 -07 000000576 INF: FPGA: Recv YRDPOS 129483
17-03-18 01:32:06.730 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:32:06.730 -07 000000611 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:06.730 -07 000000611 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 01:32:06.730 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.837 mm, average velocity = 2.119 mm/sec
17-03-18 01:32:07.270 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:32:07.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:32:07.680 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:07.680 -07 000000590 INF: FPGA: Recv YRDPOS 129483
17-03-18 01:32:07.690 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:07.690 -07 000000611 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:07.710 -07 000000611 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:32:07.710 -07 000000611 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:32:07.710 -07 000000611 INF: Y Motor: Moved to 63.2241 after 1464 ms (table move)
17-03-18 01:32:07.710 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170977 mm (DAC = 37350)
17-03-18 01:32:07.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:07.720 -07 000000611 INF: FPGA: Recv ZSGSRD 35907
17-03-18 01:32:07.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 01:32:07.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:07.720 -07 000000590 INF: FPGA: Recv ZSGSRD 35914
17-03-18 01:32:07.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:32:07.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:07.730 -07 000000611 INF: FPGA: Recv ZSGSRD 35901
17-03-18 01:32:07.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:07.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:07.740 -07 000000611 INF: FPGA: Recv ZSGSRD 35906
17-03-18 01:32:07.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:07.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:07.750 -07 000000590 INF: FPGA: Recv ZSGSRD 35908
17-03-18 01:32:07.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:07.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:07.760 -07 000000590 INF: FPGA: Recv ZSGSRD 35917
17-03-18 01:32:07.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:07.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:07.770 -07 000000590 INF: FPGA: Recv ZSGSRD 35908
17-03-18 01:32:07.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:07.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:07.780 -07 000000501 INF: FPGA: Recv ZSGSRD 35902
17-03-18 01:32:07.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:07.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:07.790 -07 000000501 INF: FPGA: Recv ZSGSRD 35900
17-03-18 01:32:07.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:07.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:07.800 -07 000000501 INF: FPGA: Recv ZSGSRD 35904
17-03-18 01:32:07.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:07.810 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:07.810 -07 000000590 INF: FPGA: Recv ZPIEZORD 31745
17-03-18 01:32:07.820 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:07.820 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.699 V. Piezo Error = -9.2 V.
17-03-18 01:32:07.820 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35907 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35906 (-170.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35900 (-170.1 uncal um), Max = 35917 (-170.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:32:07.820 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35907, posNoise = 10, negNoise = 7
17-03-18 01:32:07.820 -07 000000610 INF: Z Motor: After move to -0.170977, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:07.820 -07 000000610 INF: Z Motor: Settle wait time = 1466 ms, measure time = 102 ms (allowed 150 ms), total time = 1568 ms
17-03-18 01:32:07.820 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 01:32:07.870 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 01:32:07.870 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:32:07.870 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.170997537385346. ----------
17-03-18 01:32:07.870 -07 000000610 INF: Cycle	88	Tile	5	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:32:07.870 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37173, sync = True, waitForSettling = True)
17-03-18 01:32:07.870 -07 000000610 INF: Z Motor: Moving to -0.170167 mm, started at -0.170998 mm, distance = 0.83 um
17-03-18 01:32:07.870 -07 000000610 INF: FPGA: Xmit ZDACW 37173\n [Z Motor]
17-03-18 01:32:07.870 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 01:32:07.880 -07 000000610 INF: FPGA: 'ZDACW 37173' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:32:07.880 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:07.880 -07 000000512 INF: FPGA: Recv ZDACR 37173
17-03-18 01:32:07.890 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:07.890 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:32:08.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:08.040 -07 000000512 INF: FPGA: Recv ZSGSRD 35778
17-03-18 01:32:08.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:08.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:08.050 -07 000000611 INF: FPGA: Recv ZSGSRD 35779
17-03-18 01:32:08.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:08.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:08.060 -07 000000512 INF: FPGA: Recv ZSGSRD 35780
17-03-18 01:32:08.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:08.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:08.070 -07 000000561 INF: FPGA: Recv ZSGSRD 35779
17-03-18 01:32:08.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:08.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:08.080 -07 000000585 INF: FPGA: Recv ZSGSRD 35786
17-03-18 01:32:08.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:08.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:08.090 -07 000000585 INF: FPGA: Recv ZSGSRD 35776
17-03-18 01:32:08.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:08.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:08.100 -07 000000561 INF: FPGA: Recv ZSGSRD 35775
17-03-18 01:32:08.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:08.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:08.110 -07 000000501 INF: FPGA: Recv ZSGSRD 35776
17-03-18 01:32:08.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:08.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:08.120 -07 000000501 INF: FPGA: Recv ZSGSRD 35780
17-03-18 01:32:08.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:08.130 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:08.130 -07 000000501 INF: FPGA: Recv ZSGSRD 35782
17-03-18 01:32:08.140 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:08.140 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:08.140 -07 000000501 INF: FPGA: Recv ZPIEZORD 31552
17-03-18 01:32:08.150 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:08.150 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.672 V. Piezo Error = -9.3 V.
17-03-18 01:32:08.150 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35779 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35779 (-169.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35775 (-169.3 uncal um), Max = 35786 (-169.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:32:08.150 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35779, posNoise = 7, negNoise = 4
17-03-18 01:32:08.150 -07 000000610 INF: Z Motor: After move to -0.170167, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:08.150 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 01:32:08.150 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:32:08.150 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:32:08.150 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:32:08.150 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:32:08.150 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:32:08.150 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:32:08.150 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:32:08.150 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:32:08.150 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:32:08.150 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:32:08.150 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:32:08.150 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:32:08.160 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:32:08.160 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:32:08.160 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:32:08.160 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:32:08.170 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:32:08.170 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:32:08.170 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:32:08.170 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:32:08.180 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37350 150\n [Camera]
17-03-18 01:32:08.380 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:32:08.770 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:32:08.770 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:32:08.770 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:08.770 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:32:08.770 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:32:08.770 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:08.770 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:08.770 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:32:08.780 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:08.780 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 01:32:08.960 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37350 775
17-03-18 01:32:09.100 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.005817,
17-03-18 01:32:09.110 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:32:09.140 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 01:32:09.140 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 01:32:09.140 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:09.150 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:32:09.150 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 01:32:09.150 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 01:32:09.150 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:09.150 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:09.150 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 01:32:09.160 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 01:32:09.300 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:32:09.300 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:32:09.300 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:09.410 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:32:09.410 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:32:09.410 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:09.420 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:09.420 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:32:09.420 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:09.420 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-18 01:32:09.490 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:32:09.490 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:32:09.490 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37350 150' command took 2 ms to send, 1304 ms to get response, and 1312 ms overall
17-03-18 01:32:09.490 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.170585
17-03-18 01:32:09.490 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17058 mm
17-03-18 01:32:09.490 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:32:09.490 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 01:32:09.490 -07 000000611 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 01:32:09.490 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:09.490 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 37264, sync = True, waitForSettling = False)
17-03-18 01:32:09.500 -07 000000590 INF: Z Motor: Moving to -0.170584 mm, started at -0.170175 mm, distance = -0.41 um
17-03-18 01:32:09.500 -07 000000590 INF: FPGA: Xmit ZDACW 37264\n [Z Motor]
17-03-18 01:32:09.500 -07 000000585 INF: FPGA: Recv YRDPOS 129483
17-03-18 01:32:09.500 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 01:32:09.500 -07 000000611 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:09.500 -07 000000611 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:32:09.500 -07 000000611 INF: Y Motor: Moving 1342 steps-17
17-03-18 01:32:09.500 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 01:32:09.510 -07 000000590 INF: FPGA: 'ZDACW 37264' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:09.510 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:32:09.520 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:09.520 -07 000000585 INF: FPGA: Recv ZDACR 37264
17-03-18 01:32:09.530 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:32:09.530 -07 000000590 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-18 01:32:09.810 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 01:32:09.810 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 01:32:09.810 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:09.810 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 01:32:09.810 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:32:09.810 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:09.810 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:09.810 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:09.810 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-18 01:32:09.820 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 01:32:09.880 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 01:32:09.880 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 01:32:09.930 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:09.930 -07 000000424 INF: FPGA: Recv YRDPOS 131188
17-03-18 01:32:09.940 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:32:09.940 -07 000000611 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:09.940 -07 000000611 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-18 01:32:09.940 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.838 mm, average velocity = 2.178 mm/sec
17-03-18 01:32:10.890 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:10.890 -07 000000512 INF: FPGA: Recv YRDPOS 131189
17-03-18 01:32:10.900 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:10.900 -07 000000611 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:10.920 -07 000000611 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:32:10.920 -07 000000611 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:32:10.920 -07 000000611 INF: Y Motor: Moved to 64.0571 after 1424 ms (table move)
17-03-18 01:32:10.920 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170584 mm (DAC = 37264)
17-03-18 01:32:10.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:10.920 -07 000000590 INF: FPGA: Recv ZSGSRD 35839
17-03-18 01:32:10.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:32:10.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:10.930 -07 000000512 INF: FPGA: Recv ZSGSRD 35843
17-03-18 01:32:10.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:10.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:10.940 -07 000000424 INF: FPGA: Recv ZSGSRD 35845
17-03-18 01:32:10.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:10.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:10.950 -07 000000467 INF: FPGA: Recv ZSGSRD 35846
17-03-18 01:32:10.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:10.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:10.960 -07 000000585 INF: FPGA: Recv ZSGSRD 35851
17-03-18 01:32:10.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:10.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:10.970 -07 000000467 INF: FPGA: Recv ZSGSRD 35841
17-03-18 01:32:10.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:10.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:10.980 -07 000000611 INF: FPGA: Recv ZSGSRD 35844
17-03-18 01:32:10.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:10.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:10.990 -07 000000479 INF: FPGA: Recv ZSGSRD 35842
17-03-18 01:32:11.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:11.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:11.000 -07 000000590 INF: FPGA: Recv ZSGSRD 35842
17-03-18 01:32:11.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:11.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:11.010 -07 000000576 INF: FPGA: Recv ZSGSRD 35846
17-03-18 01:32:11.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:11.020 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:11.020 -07 000000479 INF: FPGA: Recv ZPIEZORD 31673
17-03-18 01:32:11.030 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:11.030 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.686 V. Piezo Error = -9.2 V.
17-03-18 01:32:11.030 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35844 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35844 (-169.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35839 (-169.7 uncal um), Max = 35851 (-169.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:32:11.030 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35844, posNoise = 7, negNoise = 5
17-03-18 01:32:11.030 -07 000000610 INF: Z Motor: After move to -0.170584, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:11.030 -07 000000610 INF: Z Motor: Settle wait time = 1426 ms, measure time = 104 ms (allowed 150 ms), total time = 1530 ms
17-03-18 01:32:11.030 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 01:32:11.080 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms
17-03-18 01:32:11.080 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:32:11.080 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.170592812020415. ----------
17-03-18 01:32:11.080 -07 000000610 INF: Cycle	88	Tile	6	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:32:11.080 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37088, sync = True, waitForSettling = True)
17-03-18 01:32:11.080 -07 000000610 INF: Z Motor: Moving to -0.169778 mm, started at -0.170593 mm, distance = 0.81 um
17-03-18 01:32:11.080 -07 000000610 INF: FPGA: Xmit ZDACW 37088\n [Z Motor]
17-03-18 01:32:11.080 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 01:32:11.090 -07 000000610 INF: FPGA: 'ZDACW 37088' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:32:11.090 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:11.090 -07 000000424 INF: FPGA: Recv ZDACR 37088
17-03-18 01:32:11.100 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:11.100 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:32:11.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:11.250 -07 000000585 INF: FPGA: Recv ZSGSRD 35718
17-03-18 01:32:11.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:11.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:11.260 -07 000000590 INF: FPGA: Recv ZSGSRD 35723
17-03-18 01:32:11.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:11.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:11.270 -07 000000512 INF: FPGA: Recv ZSGSRD 35722
17-03-18 01:32:11.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:11.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:11.280 -07 000000424 INF: FPGA: Recv ZSGSRD 35723
17-03-18 01:32:11.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:11.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:11.290 -07 000000424 INF: FPGA: Recv ZSGSRD 35719
17-03-18 01:32:11.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:11.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:11.300 -07 000000611 INF: FPGA: Recv ZSGSRD 35714
17-03-18 01:32:11.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:11.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:11.310 -07 000000576 INF: FPGA: Recv ZSGSRD 35718
17-03-18 01:32:11.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:11.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:11.320 -07 000000479 INF: FPGA: Recv ZSGSRD 35718
17-03-18 01:32:11.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:11.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:11.340 -07 000000467 INF: FPGA: Recv ZSGSRD 35719
17-03-18 01:32:11.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:32:11.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:11.350 -07 000000424 INF: FPGA: Recv ZSGSRD 35719
17-03-18 01:32:11.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:11.360 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:11.360 -07 000000479 INF: FPGA: Recv ZPIEZORD 31485
17-03-18 01:32:11.370 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:11.370 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.659 V. Piezo Error = -9.3 V.
17-03-18 01:32:11.370 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35719 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35719 (-168.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35714 (-168.9 uncal um), Max = 35723 (-168.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:32:11.370 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35719, posNoise = 4, negNoise = 5
17-03-18 01:32:11.370 -07 000000610 INF: Z Motor: After move to -0.169778, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:11.370 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms)
17-03-18 01:32:11.370 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:32:11.370 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:32:11.380 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:32:11.380 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:32:11.380 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:32:11.380 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:32:11.380 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:32:11.380 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:32:11.380 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:32:11.380 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:32:11.380 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:32:11.380 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:32:11.380 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:32:11.380 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:32:11.380 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:32:11.380 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:32:11.400 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 01:32:11.400 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:32:11.400 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 01:32:11.400 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:32:11.400 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37264 150\n [Camera]
17-03-18 01:32:11.600 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:32:11.990 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:32:11.990 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:32:11.990 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:11.990 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:32:11.990 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:32:11.990 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:11.990 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:11.990 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-18 01:32:12.000 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:12.000 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:32:12.180 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37264 775
17-03-18 01:32:12.270 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:32:12.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:32:12.330 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:32:12.370 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 01:32:12.370 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 01:32:12.370 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:12.370 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 01:32:12.370 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 01:32:12.370 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:12.380 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:12.380 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 01:32:12.380 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:12.390 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:32:12.520 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:32:12.520 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:32:12.520 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:12.520 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:32:12.520 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:32:12.520 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:12.520 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:12.530 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:32:12.530 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:12.530 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-18 01:32:12.710 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:32:12.710 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:32:12.710 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37264 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-18 01:32:12.710 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:32:12.710 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.169789785502695. ------
17-03-18 01:32:12.720 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17626 mm
17-03-18 01:32:12.720 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:32:12.720 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:32:12.720 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 01:32:12.720 -07 000000576 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 01:32:12.720 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38504, sync = True, waitForSettling = False)
17-03-18 01:32:12.720 -07 000000424 INF: Z Motor: Moving to -0.176260 mm, started at -0.169790 mm, distance = -6.47 um
17-03-18 01:32:12.720 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:32:12.730 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:32:12.730 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:12.730 -07 000000585 INF: FPGA: Recv YRDPOS 131189
17-03-18 01:32:12.740 -07 000000424 INF: FPGA: Xmit ZDACW 38504\n [Z Motor]
17-03-18 01:32:12.740 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 01:32:12.740 -07 000000576 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:12.740 -07 000000576 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:32:12.740 -07 000000576 INF: Y Motor: Moving 1337 steps-12
17-03-18 01:32:12.740 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 01:32:12.750 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:32:12.750 -07 000000424 INF: FPGA: 'ZDACW 38504' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 01:32:12.760 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:32:12.770 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:12.900 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 01:32:12.900 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 01:32:12.900 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:12.900 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 01:32:12.900 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 01:32:12.900 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:12.900 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:12.910 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:12.910 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 01:32:12.910 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 01:32:12.920 -07 000000626 INF: FPGA: Recv ZDACR 38504
17-03-18 01:32:12.920 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 146 ms to get response, and 176 ms overall
17-03-18 01:32:12.920 -07 000000424 INF: Z Motor: MoveAbsStepped took 201 ms (did NOT wait for settling yet))
17-03-18 01:32:12.950 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:32:12.950 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 01:32:13.130 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 01:32:13.130 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:32:13.180 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:13.180 -07 000000424 INF: FPGA: Recv YRDPOS 132872
17-03-18 01:32:13.190 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:13.190 -07 000000576 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:13.190 -07 000000576 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:32:13.190 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-18 01:32:14.140 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:14.140 -07 000000424 INF: FPGA: Recv YRDPOS 132872
17-03-18 01:32:14.150 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:14.150 -07 000000576 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:14.170 -07 000000576 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:32:14.170 -07 000000576 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:32:14.170 -07 000000576 INF: Y Motor: Moved to 64.8789 after 1452 ms (table move)
17-03-18 01:32:14.180 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176260 mm (DAC = 38504)
17-03-18 01:32:14.180 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:14.180 -07 000000576 INF: FPGA: Recv ZSGSRD 36734
17-03-18 01:32:14.190 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:32:14.190 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:14.190 -07 000000576 INF: FPGA: Recv ZSGSRD 36722
17-03-18 01:32:14.200 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:14.200 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:14.200 -07 000000502 INF: FPGA: Recv ZSGSRD 36729
17-03-18 01:32:14.210 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:14.210 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:14.210 -07 000000502 INF: FPGA: Recv ZSGSRD 36728
17-03-18 01:32:14.220 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:14.220 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:14.220 -07 000000424 INF: FPGA: Recv ZSGSRD 36734
17-03-18 01:32:14.230 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:14.230 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:14.230 -07 000000424 INF: FPGA: Recv ZSGSRD 36728
17-03-18 01:32:14.240 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:14.240 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:14.240 -07 000000626 INF: FPGA: Recv ZSGSRD 36727
17-03-18 01:32:14.250 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:14.250 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:14.250 -07 000000576 INF: FPGA: Recv ZSGSRD 36719
17-03-18 01:32:14.260 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:14.260 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:14.260 -07 000000626 INF: FPGA: Recv ZSGSRD 36725
17-03-18 01:32:14.270 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:14.270 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:14.270 -07 000000576 INF: FPGA: Recv ZSGSRD 36730
17-03-18 01:32:14.280 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:14.280 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:14.280 -07 000000626 INF: FPGA: Recv ZPIEZORD 32836
17-03-18 01:32:14.290 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:14.290 -07 000000479 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.875 V. Piezo Error = -8.6 V.
17-03-18 01:32:14.290 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36728 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36728 (-175.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36719 (-175.3 uncal um), Max = 36734 (-175.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:32:14.290 -07 000000479 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36728, posNoise = 6, negNoise = 9
17-03-18 01:32:14.290 -07 000000479 INF: Z Motor: After move to -0.176260, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:14.290 -07 000000479 INF: Z Motor: Settle wait time = 1456 ms, measure time = 109 ms (allowed 150 ms), total time = 1565 ms
17-03-18 01:32:14.290 -07 000000479 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:32:14.340 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 01:32:14.340 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:32:14.340 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:32:14.340 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:32:14.340 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:32:14.340 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:32:14.340 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:32:14.340 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:32:14.340 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:32:14.340 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:32:14.350 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:32:14.350 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:32:14.360 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:32:14.360 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:32:14.360 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:32:14.410 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:32:14.470 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.008536,
17-03-18 01:32:14.710 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:32:14.710 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:32:14.710 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:32:14.710 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-18 01:32:14.750 -07 000000479 INF: FPGA: Recv @CAMSNAP 383
17-03-18 01:32:14.750 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 01:32:14.750 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 384 ms to get response, and 387 ms overall
17-03-18 01:32:14.840 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:32:14.840 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:14.840 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:32:14.840 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:32:14.850 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:32:14.850 -07 000000479 INF: Autofocus start
17-03-18 01:32:14.850 -07 000000479 INF: MeasureProfile start
17-03-18 01:32:14.850 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:32:14.860 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:32:14.860 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:32:14.860 -07 000000479 INF: MeasureProfile done
17-03-18 01:32:14.860 -07 000000479 INF: X=32  Z correction [um]=0.09220707
17-03-18 01:32:14.860 -07 000000479 INF: Autofocus finished
17-03-18 01:32:15.060 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:32:15.060 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:32:15.060 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.176271815553731. ----------
17-03-18 01:32:15.060 -07 000000610 INF: Cycle	88	Tile	7	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:32:15.070 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37036, sync = True, waitForSettling = True)
17-03-18 01:32:15.070 -07 000000610 INF: Z Motor: Moving to -0.169540 mm, started at -0.176272 mm, distance = 6.73 um
17-03-18 01:32:15.070 -07 000000610 INF: FPGA: Xmit ZDACW 37036\n [Z Motor]
17-03-18 01:32:15.070 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:32:15.080 -07 000000610 INF: FPGA: 'ZDACW 37036' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:32:15.080 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:15.080 -07 000000591 INF: FPGA: Recv ZDACR 37036
17-03-18 01:32:15.090 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:15.090 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:32:15.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:15.240 -07 000000626 INF: FPGA: Recv ZSGSRD 35682
17-03-18 01:32:15.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:15.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:15.250 -07 000000591 INF: FPGA: Recv ZSGSRD 35681
17-03-18 01:32:15.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:15.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:15.260 -07 000000626 INF: FPGA: Recv ZSGSRD 35682
17-03-18 01:32:15.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:15.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:15.270 -07 000000576 INF: FPGA: Recv ZSGSRD 35685
17-03-18 01:32:15.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:15.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:15.280 -07 000000626 INF: FPGA: Recv ZSGSRD 35679
17-03-18 01:32:15.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:15.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:15.290 -07 000000591 INF: FPGA: Recv ZSGSRD 35681
17-03-18 01:32:15.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:15.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:15.300 -07 000000479 INF: FPGA: Recv ZSGSRD 35680
17-03-18 01:32:15.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:15.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:15.310 -07 000000591 INF: FPGA: Recv ZSGSRD 35687
17-03-18 01:32:15.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:15.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:15.320 -07 000000479 INF: FPGA: Recv ZSGSRD 35683
17-03-18 01:32:15.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:15.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:15.330 -07 000000502 INF: FPGA: Recv ZSGSRD 35680
17-03-18 01:32:15.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:15.340 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:15.340 -07 000000479 INF: FPGA: Recv ZPIEZORD 31457
17-03-18 01:32:15.350 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:15.350 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.651 V. Piezo Error = -9.3 V.
17-03-18 01:32:15.350 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35682 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35682 (-168.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35679 (-168.7 uncal um), Max = 35687 (-168.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:32:15.350 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35682, posNoise = 5, negNoise = 3
17-03-18 01:32:15.350 -07 000000610 INF: Z Motor: After move to -0.169540, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:15.350 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:32:15.350 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:32:15.350 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:32:15.350 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:32:15.350 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:32:15.350 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:32:15.350 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:32:15.350 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:32:15.350 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:32:15.350 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:32:15.350 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:32:15.350 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:32:15.350 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:32:15.360 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:32:15.360 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:32:15.360 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:32:15.360 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:32:15.370 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:32:15.370 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:32:15.370 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:32:15.370 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:32:15.380 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37213 150\n [Camera]
17-03-18 01:32:15.570 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:32:15.970 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 01:32:15.970 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 01:32:15.970 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:15.970 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 01:32:15.970 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 01:32:15.970 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:15.970 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:15.970 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1460549448, 0x0, 391868352) start.
17-03-18 01:32:15.980 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:15.980 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:32:16.160 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37213 775
17-03-18 01:32:16.310 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:32:16.350 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1460549448, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 01:32:16.350 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 01:32:16.350 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:16.350 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 01:32:16.350 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 01:32:16.350 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:16.350 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:16.350 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 01:32:16.350 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:16.360 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 01:32:16.500 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:32:16.500 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:32:16.500 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:16.500 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:32:16.500 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:32:16.500 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:16.500 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:16.500 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 01:32:16.510 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:16.510 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 01:32:16.690 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:32:16.690 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:32:16.690 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37213 150' command took 2 ms to send, 1302 ms to get response, and 1312 ms overall
17-03-18 01:32:16.690 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.170162
17-03-18 01:32:16.690 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17016 mm
17-03-18 01:32:16.690 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:32:16.690 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 37172, sync = True, waitForSettling = False)
17-03-18 01:32:16.690 -07 000000591 INF: Z Motor: Moving to -0.170163 mm, started at -0.169552 mm, distance = -0.61 um
17-03-18 01:32:16.690 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 01:32:16.690 -07 000000512 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 01:32:16.700 -07 000000591 INF: FPGA: Xmit ZDACW 37172\n [Z Motor]
17-03-18 01:32:16.700 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 01:32:16.710 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:16.710 -07 000000591 INF: FPGA: 'ZDACW 37172' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:32:16.710 -07 000000467 INF: FPGA: Recv YRDPOS 132872
17-03-18 01:32:16.720 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 01:32:16.720 -07 000000512 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:16.720 -07 000000512 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:32:16.720 -07 000000512 INF: Y Motor: Moving 1350 steps-28
17-03-18 01:32:16.720 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:16.830 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:32:16.830 -07 000000467 INF: FPGA: Recv ZDACR 37172
17-03-18 01:32:16.830 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 125 ms overall
17-03-18 01:32:16.830 -07 000000591 INF: Z Motor: MoveAbsStepped took 138 ms (did NOT wait for settling yet))
17-03-18 01:32:16.880 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 01:32:16.880 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 01:32:16.880 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:16.880 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 01:32:16.880 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 01:32:16.880 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:16.890 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:16.890 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:16.890 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:32:16.890 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:32:17.210 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 01:32:17.210 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 373 ms to get response, and 493 ms overall
17-03-18 01:32:17.250 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:17.250 -07 000000479 INF: FPGA: Recv YRDPOS 134582
17-03-18 01:32:17.260 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:32:17.260 -07 000000512 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:17.260 -07 000000512 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 01:32:17.260 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 493 ms, distance = 0.844 mm, average velocity = 1.711 mm/sec
17-03-18 01:32:17.270 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:32:17.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:32:18.210 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:18.210 -07 000000591 INF: FPGA: Recv YRDPOS 134583
17-03-18 01:32:18.220 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:18.220 -07 000000512 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:18.240 -07 000000512 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:32:18.240 -07 000000512 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:32:18.240 -07 000000512 INF: Y Motor: Moved to 65.7144 after 1552 ms (table move)
17-03-18 01:32:18.250 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170163 mm (DAC = 37172)
17-03-18 01:32:18.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:18.250 -07 000000576 INF: FPGA: Recv ZSGSRD 35784
17-03-18 01:32:18.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:32:18.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:18.260 -07 000000611 INF: FPGA: Recv ZSGSRD 35780
17-03-18 01:32:18.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:18.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:18.270 -07 000000591 INF: FPGA: Recv ZSGSRD 35786
17-03-18 01:32:18.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:18.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:18.280 -07 000000585 INF: FPGA: Recv ZSGSRD 35779
17-03-18 01:32:18.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:18.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:18.290 -07 000000591 INF: FPGA: Recv ZSGSRD 35777
17-03-18 01:32:18.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:18.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:18.300 -07 000000591 INF: FPGA: Recv ZSGSRD 35777
17-03-18 01:32:18.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:18.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:18.310 -07 000000591 INF: FPGA: Recv ZSGSRD 35776
17-03-18 01:32:18.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:18.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:18.320 -07 000000611 INF: FPGA: Recv ZSGSRD 35775
17-03-18 01:32:18.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:18.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:18.330 -07 000000591 INF: FPGA: Recv ZSGSRD 35774
17-03-18 01:32:18.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:18.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:18.340 -07 000000585 INF: FPGA: Recv ZSGSRD 35781
17-03-18 01:32:18.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:18.350 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:18.350 -07 000000611 INF: FPGA: Recv ZPIEZORD 31552
17-03-18 01:32:18.360 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:18.360 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.672 V. Piezo Error = -9.3 V.
17-03-18 01:32:18.360 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35779 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35778 (-169.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35774 (-169.3 uncal um), Max = 35786 (-169.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:32:18.360 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35779, posNoise = 7, negNoise = 5
17-03-18 01:32:18.360 -07 000000610 INF: Z Motor: After move to -0.170163, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:18.360 -07 000000610 INF: Z Motor: Settle wait time = 1556 ms, measure time = 107 ms (allowed 150 ms), total time = 1663 ms
17-03-18 01:32:18.360 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 01:32:18.410 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1715 ms
17-03-18 01:32:18.410 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:32:18.410 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.1701752382312. ----------
17-03-18 01:32:18.410 -07 000000610 INF: Cycle	88	Tile	8	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:32:18.410 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36995, sync = True, waitForSettling = True)
17-03-18 01:32:18.410 -07 000000610 INF: Z Motor: Moving to -0.169352 mm, started at -0.170175 mm, distance = 0.82 um
17-03-18 01:32:18.410 -07 000000610 INF: FPGA: Xmit ZDACW 36995\n [Z Motor]
17-03-18 01:32:18.420 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:32:18.420 -07 000000610 INF: FPGA: 'ZDACW 36995' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:32:18.420 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:18.420 -07 000000591 INF: FPGA: Recv ZDACR 36995
17-03-18 01:32:18.430 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:18.430 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:32:18.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:18.580 -07 000000611 INF: FPGA: Recv ZSGSRD 35655
17-03-18 01:32:18.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:18.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:18.590 -07 000000502 INF: FPGA: Recv ZSGSRD 35652
17-03-18 01:32:18.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:18.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:18.600 -07 000000502 INF: FPGA: Recv ZSGSRD 35654
17-03-18 01:32:18.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:18.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:18.610 -07 000000502 INF: FPGA: Recv ZSGSRD 35648
17-03-18 01:32:18.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:18.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:18.620 -07 000000502 INF: FPGA: Recv ZSGSRD 35650
17-03-18 01:32:18.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:18.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:18.630 -07 000000611 INF: FPGA: Recv ZSGSRD 35651
17-03-18 01:32:18.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:18.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:18.640 -07 000000611 INF: FPGA: Recv ZSGSRD 35645
17-03-18 01:32:18.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:18.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:18.650 -07 000000611 INF: FPGA: Recv ZSGSRD 35650
17-03-18 01:32:18.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:18.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:18.660 -07 000000502 INF: FPGA: Recv ZSGSRD 35652
17-03-18 01:32:18.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:18.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:18.670 -07 000000576 INF: FPGA: Recv ZSGSRD 35657
17-03-18 01:32:18.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:18.680 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:18.680 -07 000000591 INF: FPGA: Recv ZPIEZORD 31433
17-03-18 01:32:18.690 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:18.690 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.645 V. Piezo Error = -9.3 V.
17-03-18 01:32:18.690 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35651 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35652 (-168.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35645 (-168.4 uncal um), Max = 35657 (-168.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:32:18.690 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35651, posNoise = 6, negNoise = 6
17-03-18 01:32:18.690 -07 000000610 INF: Z Motor: After move to -0.169352, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:18.690 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 01:32:18.690 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:32:18.690 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:32:18.690 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:32:18.690 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:32:18.690 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:32:18.690 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:32:18.690 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:32:18.690 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:32:18.690 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:32:18.690 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:32:18.690 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:32:18.690 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:32:18.690 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:32:18.700 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:32:18.700 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:32:18.700 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:32:18.700 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:32:18.700 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:32:18.700 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:32:18.700 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:32:18.710 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37172 150\n [Camera]
17-03-18 01:32:18.910 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:32:19.300 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:32:19.300 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:32:19.300 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:19.300 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:32:19.300 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:32:19.300 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:19.300 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:19.300 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:32:19.310 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:19.310 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:32:19.490 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37172 775
17-03-18 01:32:19.640 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:32:19.690 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 01:32:19.690 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 01:32:19.690 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:19.690 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 01:32:19.690 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 01:32:19.690 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:19.700 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:19.700 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:19.700 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:32:19.700 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:32:19.830 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.016692,
17-03-18 01:32:19.830 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:32:19.830 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:32:19.830 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:19.830 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:32:19.830 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:32:19.830 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:19.830 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:19.830 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 01:32:19.840 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:19.840 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 01:32:20.020 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:32:20.020 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:32:20.020 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37172 150' command took 2 ms to send, 1304 ms to get response, and 1312 ms overall
17-03-18 01:32:20.020 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.169714
17-03-18 01:32:20.020 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.16971 mm
17-03-18 01:32:20.020 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:32:20.020 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 01:32:20.020 -07 000000424 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-18 01:32:20.020 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:20.020 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 37074, sync = True, waitForSettling = False)
17-03-18 01:32:20.020 -07 000000611 INF: Z Motor: Moving to -0.169714 mm, started at -0.169353 mm, distance = -0.36 um
17-03-18 01:32:20.030 -07 000000611 INF: FPGA: Xmit ZDACW 37074\n [Z Motor]
17-03-18 01:32:20.030 -07 000000512 INF: FPGA: Recv YRDPOS 134583
17-03-18 01:32:20.030 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:32:20.030 -07 000000424 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:20.030 -07 000000424 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:32:20.030 -07 000000424 INF: Y Motor: Moving 1341 steps-18
17-03-18 01:32:20.030 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:32:20.040 -07 000000611 INF: FPGA: 'ZDACW 37074' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:20.040 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:32:20.050 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:20.050 -07 000000512 INF: FPGA: Recv ZDACR 37074
17-03-18 01:32:20.060 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:32:20.060 -07 000000611 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-18 01:32:20.230 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:32:20.230 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:32:20.230 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:20.230 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:32:20.240 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:32:20.240 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:20.240 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:20.240 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 01:32:20.240 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:32:20.250 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 01:32:20.410 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 01:32:20.410 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 01:32:20.460 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:20.460 -07 000000474 INF: FPGA: Recv YRDPOS 136272
17-03-18 01:32:20.470 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:32:20.470 -07 000000424 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:20.470 -07 000000424 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:32:20.470 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.838 mm, average velocity = 2.177 mm/sec
17-03-18 01:32:21.420 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:21.420 -07 000000474 INF: FPGA: Recv YRDPOS 136272
17-03-18 01:32:21.430 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:21.430 -07 000000424 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:21.450 -07 000000424 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:32:21.450 -07 000000424 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:32:21.450 -07 000000424 INF: Y Motor: Moved to 66.5391 after 1429 ms (table move)
17-03-18 01:32:21.460 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169714 mm (DAC = 37074)
17-03-18 01:32:21.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:21.460 -07 000000585 INF: FPGA: Recv ZSGSRD 35711
17-03-18 01:32:21.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:21.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:21.470 -07 000000561 INF: FPGA: Recv ZSGSRD 35713
17-03-18 01:32:21.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:21.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:21.480 -07 000000424 INF: FPGA: Recv ZSGSRD 35708
17-03-18 01:32:21.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:21.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:21.490 -07 000000479 INF: FPGA: Recv ZSGSRD 35712
17-03-18 01:32:21.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:21.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:21.500 -07 000000467 INF: FPGA: Recv ZSGSRD 35713
17-03-18 01:32:21.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:21.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:21.510 -07 000000561 INF: FPGA: Recv ZSGSRD 35704
17-03-18 01:32:21.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:21.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:21.520 -07 000000611 INF: FPGA: Recv ZSGSRD 35704
17-03-18 01:32:21.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:21.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:21.530 -07 000000561 INF: FPGA: Recv ZSGSRD 35705
17-03-18 01:32:21.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:21.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:21.540 -07 000000611 INF: FPGA: Recv ZSGSRD 35707
17-03-18 01:32:21.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:21.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:21.550 -07 000000479 INF: FPGA: Recv ZSGSRD 35701
17-03-18 01:32:21.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:21.560 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:21.560 -07 000000626 INF: FPGA: Recv ZPIEZORD 31523
17-03-18 01:32:21.570 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:32:21.570 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.657 V. Piezo Error = -9.2 V.
17-03-18 01:32:21.570 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35708 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35708 (-168.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35701 (-168.8 uncal um), Max = 35713 (-168.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:32:21.570 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35708, posNoise = 5, negNoise = 7
17-03-18 01:32:21.570 -07 000000610 INF: Z Motor: After move to -0.169714, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:21.570 -07 000000610 INF: Z Motor: Settle wait time = 1431 ms, measure time = 110 ms (allowed 150 ms), total time = 1541 ms
17-03-18 01:32:21.570 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:32:21.610 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-18 01:32:21.610 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:32:21.610 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.169719119169135. ----------
17-03-18 01:32:21.610 -07 000000610 INF: Cycle	88	Tile	9	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:32:21.610 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36897, sync = True, waitForSettling = True)
17-03-18 01:32:21.610 -07 000000610 INF: Z Motor: Moving to -0.168904 mm, started at -0.169719 mm, distance = 0.82 um
17-03-18 01:32:21.610 -07 000000610 INF: FPGA: Xmit ZDACW 36897\n [Z Motor]
17-03-18 01:32:21.610 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 01:32:21.620 -07 000000610 INF: FPGA: 'ZDACW 36897' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:32:21.620 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:21.620 -07 000000561 INF: FPGA: Recv ZDACR 36897
17-03-18 01:32:21.630 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:21.630 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:32:21.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:21.780 -07 000000585 INF: FPGA: Recv ZSGSRD 35585
17-03-18 01:32:21.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:21.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:21.790 -07 000000561 INF: FPGA: Recv ZSGSRD 35585
17-03-18 01:32:21.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:21.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:21.800 -07 000000585 INF: FPGA: Recv ZSGSRD 35586
17-03-18 01:32:21.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:21.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:21.810 -07 000000479 INF: FPGA: Recv ZSGSRD 35580
17-03-18 01:32:21.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:21.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:21.820 -07 000000561 INF: FPGA: Recv ZSGSRD 35580
17-03-18 01:32:21.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:21.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:21.830 -07 000000626 INF: FPGA: Recv ZSGSRD 35581
17-03-18 01:32:21.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:21.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:21.840 -07 000000512 INF: FPGA: Recv ZSGSRD 35582
17-03-18 01:32:21.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:21.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:21.850 -07 000000591 INF: FPGA: Recv ZSGSRD 35585
17-03-18 01:32:21.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:21.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:21.860 -07 000000512 INF: FPGA: Recv ZSGSRD 35582
17-03-18 01:32:21.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:21.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:21.870 -07 000000479 INF: FPGA: Recv ZSGSRD 35584
17-03-18 01:32:21.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:21.880 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:21.880 -07 000000591 INF: FPGA: Recv ZPIEZORD 31305
17-03-18 01:32:21.890 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:21.890 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.630 V. Piezo Error = -9.4 V.
17-03-18 01:32:21.890 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35583 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35583 (-168.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35580 (-168.0 uncal um), Max = 35586 (-168.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:32:21.890 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35583, posNoise = 3, negNoise = 3
17-03-18 01:32:21.890 -07 000000610 INF: Z Motor: After move to -0.168904, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:21.890 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:32:21.890 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:32:21.890 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:32:21.890 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:32:21.890 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:32:21.890 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:32:21.890 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:32:21.890 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:32:21.890 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:32:21.890 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:32:21.890 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:32:21.890 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:32:21.890 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:32:21.900 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:32:21.900 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:32:21.900 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:32:21.900 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:32:21.910 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:32:21.910 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:32:21.910 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:32:21.910 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:32:21.920 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37074 150\n [Camera]
17-03-18 01:32:22.120 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:32:22.270 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:32:22.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:32:22.510 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:32:22.510 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:32:22.510 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:22.510 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:32:22.510 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:32:22.510 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:22.510 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:22.510 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 01:32:22.510 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:22.510 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 01:32:22.700 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37074 775
17-03-18 01:32:22.850 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:32:22.890 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 01:32:22.890 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 01:32:22.890 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:22.900 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:32:22.900 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 01:32:22.900 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 01:32:22.900 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 01:32:22.900 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:22.900 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:32:22.910 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:32:23.040 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:32:23.040 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:32:23.040 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:23.040 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:23.040 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:32:23.040 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:32:23.040 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:32:23.040 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:23.040 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:23.040 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-18 01:32:23.230 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:32:23.230 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:32:23.230 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37074 150' command took 2 ms to send, 1302 ms to get response, and 1312 ms overall
17-03-18 01:32:23.230 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.169777
17-03-18 01:32:23.230 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.16978 mm
17-03-18 01:32:23.230 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:32:23.230 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37088, sync = True, waitForSettling = False)
17-03-18 01:32:23.230 -07 000000502 INF: Z Motor: Moving to -0.169778 mm, started at -0.168916 mm, distance = -0.86 um
17-03-18 01:32:23.230 -07 000000502 INF: FPGA: Xmit ZDACW 37088\n [Z Motor]
17-03-18 01:32:23.230 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 01:32:23.230 -07 000000512 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 01:32:23.240 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:23.240 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 01:32:23.240 -07 000000502 INF: FPGA: 'ZDACW 37088' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:32:23.240 -07 000000611 INF: FPGA: Recv YRDPOS 136272
17-03-18 01:32:23.250 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:23.250 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:23.250 -07 000000512 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:23.250 -07 000000512 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:32:23.250 -07 000000512 INF: Y Motor: Moving 1350 steps-28
17-03-18 01:32:23.250 -07 000000611 INF: FPGA: Recv ZDACR 37088
17-03-18 01:32:23.260 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:32:23.260 -07 000000502 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-18 01:32:23.260 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:32:23.420 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 01:32:23.420 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 01:32:23.420 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:23.420 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 01:32:23.420 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 01:32:23.420 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:23.430 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:32:23.430 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 01:32:23.430 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:32:23.430 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 01:32:23.630 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 01:32:23.630 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-18 01:32:23.680 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:23.680 -07 000000479 INF: FPGA: Recv YRDPOS 137977
17-03-18 01:32:23.690 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:32:23.690 -07 000000512 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:23.690 -07 000000512 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 01:32:23.690 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.174 mm/sec
17-03-18 01:32:24.640 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:24.640 -07 000000479 INF: FPGA: Recv YRDPOS 137978
17-03-18 01:32:24.650 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:24.650 -07 000000512 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:24.670 -07 000000512 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:32:24.670 -07 000000512 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:32:24.670 -07 000000512 INF: Y Motor: Moved to 67.3721 after 1438 ms (table move)
17-03-18 01:32:24.680 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169778 mm (DAC = 37088)
17-03-18 01:32:24.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:24.680 -07 000000479 INF: FPGA: Recv ZSGSRD 35721
17-03-18 01:32:24.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:32:24.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:24.690 -07 000000479 INF: FPGA: Recv ZSGSRD 35721
17-03-18 01:32:24.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:24.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:24.700 -07 000000479 INF: FPGA: Recv ZSGSRD 35720
17-03-18 01:32:24.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:24.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:24.710 -07 000000626 INF: FPGA: Recv ZSGSRD 35718
17-03-18 01:32:24.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:24.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:24.720 -07 000000502 INF: FPGA: Recv ZSGSRD 35718
17-03-18 01:32:24.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:24.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:24.730 -07 000000479 INF: FPGA: Recv ZSGSRD 35717
17-03-18 01:32:24.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:24.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:24.740 -07 000000611 INF: FPGA: Recv ZSGSRD 35715
17-03-18 01:32:24.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:24.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:24.750 -07 000000611 INF: FPGA: Recv ZSGSRD 35720
17-03-18 01:32:24.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:24.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:24.760 -07 000000512 INF: FPGA: Recv ZSGSRD 35715
17-03-18 01:32:24.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:24.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:24.770 -07 000000626 INF: FPGA: Recv ZSGSRD 35719
17-03-18 01:32:24.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:24.780 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:24.780 -07 000000626 INF: FPGA: Recv ZPIEZORD 31516
17-03-18 01:32:24.790 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:24.790 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.659 V. Piezo Error = -9.3 V.
17-03-18 01:32:24.790 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35718 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35718 (-168.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35715 (-168.9 uncal um), Max = 35721 (-168.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:32:24.790 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35718, posNoise = 3, negNoise = 3
17-03-18 01:32:24.790 -07 000000610 INF: Z Motor: After move to -0.169778, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:24.790 -07 000000610 INF: Z Motor: Settle wait time = 1442 ms, measure time = 109 ms (allowed 150 ms), total time = 1551 ms
17-03-18 01:32:24.790 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:32:24.840 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-18 01:32:24.840 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:32:24.840 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.169783361290553. ----------
17-03-18 01:32:24.840 -07 000000610 INF: Cycle	88	Tile	10	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:32:24.840 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36911, sync = True, waitForSettling = True)
17-03-18 01:32:24.840 -07 000000610 INF: Z Motor: Moving to -0.168968 mm, started at -0.169783 mm, distance = 0.82 um
17-03-18 01:32:24.840 -07 000000610 INF: FPGA: Xmit ZDACW 36911\n [Z Motor]
17-03-18 01:32:24.840 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 01:32:24.850 -07 000000610 INF: FPGA: 'ZDACW 36911' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:32:24.850 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:24.850 -07 000000512 INF: FPGA: Recv ZDACR 36911
17-03-18 01:32:24.860 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:24.860 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:32:25.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:25.010 -07 000000611 INF: FPGA: Recv ZSGSRD 35599
17-03-18 01:32:25.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:25.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:25.020 -07 000000512 INF: FPGA: Recv ZSGSRD 35594
17-03-18 01:32:25.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:25.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:25.030 -07 000000611 INF: FPGA: Recv ZSGSRD 35594
17-03-18 01:32:25.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:25.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:25.040 -07 000000512 INF: FPGA: Recv ZSGSRD 35590
17-03-18 01:32:25.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:25.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:25.050 -07 000000611 INF: FPGA: Recv ZSGSRD 35591
17-03-18 01:32:25.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:25.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:25.060 -07 000000502 INF: FPGA: Recv ZSGSRD 35591
17-03-18 01:32:25.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:25.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:25.070 -07 000000611 INF: FPGA: Recv ZSGSRD 35595
17-03-18 01:32:25.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:25.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:25.080 -07 000000502 INF: FPGA: Recv ZSGSRD 35593
17-03-18 01:32:25.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:25.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:25.090 -07 000000611 INF: FPGA: Recv ZSGSRD 35596
17-03-18 01:32:25.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:25.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:25.100 -07 000000479 INF: FPGA: Recv ZSGSRD 35593
17-03-18 01:32:25.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:25.110 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:25.110 -07 000000611 INF: FPGA: Recv ZPIEZORD 31339
17-03-18 01:32:25.120 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:25.120 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.632 V. Piezo Error = -9.4 V.
17-03-18 01:32:25.120 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35594 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35594 (-168.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35590 (-168.1 uncal um), Max = 35599 (-168.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:32:25.120 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35594, posNoise = 5, negNoise = 4
17-03-18 01:32:25.120 -07 000000610 INF: Z Motor: After move to -0.168968, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:25.120 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 01:32:25.120 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:32:25.120 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:32:25.120 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:32:25.120 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:32:25.120 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:32:25.120 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:32:25.120 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:32:25.120 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:32:25.120 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:32:25.120 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:32:25.120 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 01:32:25.120 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:32:25.130 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-18 01:32:25.130 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:32:25.130 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:32:25.130 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:32:25.140 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:32:25.140 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:32:25.140 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:32:25.140 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 01:32:25.140 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37088 150\n [Camera]
17-03-18 01:32:25.190 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.014009,
17-03-18 01:32:25.350 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:32:25.740 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:32:25.740 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:32:25.740 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:25.740 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:25.740 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) start.
17-03-18 01:32:25.740 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:32:25.740 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:32:25.740 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:25.740 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:25.740 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:32:25.930 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37088 775
17-03-18 01:32:26.080 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:32:26.110 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 01:32:26.110 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 01:32:26.110 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:26.120 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 01:32:26.120 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 01:32:26.120 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:26.120 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:32:26.120 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 01:32:26.120 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:26.130 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 01:32:26.270 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1116
17-03-18 01:32:26.270 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1116
17-03-18 01:32:26.270 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:26.270 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1116
17-03-18 01:32:26.270 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1116
17-03-18 01:32:26.270 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:26.280 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:26.280 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:32:26.280 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:26.280 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:32:26.460 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:32:26.460 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:32:26.460 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37088 150' command took 2 ms to send, 1304 ms to get response, and 1314 ms overall
17-03-18 01:32:26.460 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:32:26.460 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.168986758984974. ------
17-03-18 01:32:26.470 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17530 mm
17-03-18 01:32:26.470 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:32:26.470 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:32:26.470 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 01:32:26.470 -07 000000590 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 01:32:26.470 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:32:26.470 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38294, sync = True, waitForSettling = False)
17-03-18 01:32:26.470 -07 000000512 INF: Z Motor: Moving to -0.175299 mm, started at -0.168987 mm, distance = -6.31 um
17-03-18 01:32:26.480 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:32:26.480 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:26.480 -07 000000625 INF: FPGA: Recv YRDPOS 137978
17-03-18 01:32:26.490 -07 000000512 INF: FPGA: Xmit ZDACW 38294\n [Z Motor]
17-03-18 01:32:26.490 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 01:32:26.490 -07 000000590 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:26.490 -07 000000590 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:32:26.490 -07 000000590 INF: Y Motor: Moving 1345 steps-23
17-03-18 01:32:26.490 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 01:32:26.500 -07 000000487 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:32:26.500 -07 000000512 INF: FPGA: 'ZDACW 38294' command took 3 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 01:32:26.510 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:32:26.520 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:26.520 -07 000000479 INF: FPGA: Recv ZDACR 38294
17-03-18 01:32:26.530 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:32:26.530 -07 000000512 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 01:32:26.660 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 01:32:26.660 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 01:32:26.660 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:26.660 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 01:32:26.660 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 01:32:26.660 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:26.660 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:26.660 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:32:26.660 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:26.670 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:32:26.700 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:32:26.700 -07 000000487 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:32:26.880 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 01:32:26.880 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 01:32:26.930 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:26.940 -07 000000626 INF: FPGA: Recv YRDPOS 139684
17-03-18 01:32:26.940 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:32:26.940 -07 000000590 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:26.940 -07 000000590 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 01:32:26.940 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.841 mm, average velocity = 2.133 mm/sec
17-03-18 01:32:27.270 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:32:27.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:32:27.890 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:27.890 -07 000000625 INF: FPGA: Recv YRDPOS 139685
17-03-18 01:32:27.900 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:27.900 -07 000000590 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:27.920 -07 000000590 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:32:27.920 -07 000000590 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:32:27.920 -07 000000590 INF: Y Motor: Moved to 68.2056 after 1451 ms (table move)
17-03-18 01:32:27.930 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175299 mm (DAC = 38294)
17-03-18 01:32:27.930 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:27.930 -07 000000487 INF: FPGA: Recv ZSGSRD 36583
17-03-18 01:32:27.940 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:27.940 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:27.940 -07 000000487 INF: FPGA: Recv ZSGSRD 36578
17-03-18 01:32:27.950 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:27.950 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:27.950 -07 000000590 INF: FPGA: Recv ZSGSRD 36582
17-03-18 01:32:27.960 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:27.960 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:27.960 -07 000000487 INF: FPGA: Recv ZSGSRD 36578
17-03-18 01:32:27.970 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:27.970 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:27.970 -07 000000590 INF: FPGA: Recv ZSGSRD 36583
17-03-18 01:32:27.980 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:27.980 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:27.980 -07 000000590 INF: FPGA: Recv ZSGSRD 36573
17-03-18 01:32:27.990 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:27.990 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:27.990 -07 000000487 INF: FPGA: Recv ZSGSRD 36572
17-03-18 01:32:28.000 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:28.000 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:28.000 -07 000000626 INF: FPGA: Recv ZSGSRD 36578
17-03-18 01:32:28.010 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:28.010 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:28.010 -07 000000590 INF: FPGA: Recv ZSGSRD 36577
17-03-18 01:32:28.020 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:28.020 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:28.020 -07 000000590 INF: FPGA: Recv ZSGSRD 36582
17-03-18 01:32:28.030 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:28.030 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:28.030 -07 000000626 INF: FPGA: Recv ZPIEZORD 32694
17-03-18 01:32:28.040 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:28.040 -07 000000611 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.843 V. Piezo Error = -8.6 V.
17-03-18 01:32:28.040 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36579 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36578 (-174.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36572 (-174.4 uncal um), Max = 36583 (-174.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:32:28.040 -07 000000611 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36579, posNoise = 4, negNoise = 7
17-03-18 01:32:28.040 -07 000000611 INF: Z Motor: After move to -0.175299, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:28.040 -07 000000611 INF: Z Motor: Settle wait time = 1454 ms, measure time = 110 ms (allowed 150 ms), total time = 1564 ms
17-03-18 01:32:28.040 -07 000000611 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:32:28.080 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-18 01:32:28.080 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:32:28.080 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:32:28.080 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:32:28.080 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:32:28.080 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:32:28.080 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:32:28.080 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:32:28.080 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:32:28.080 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:32:28.090 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:32:28.090 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:32:28.100 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:32:28.100 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:32:28.100 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:32:28.150 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:32:28.450 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:32:28.450 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:32:28.450 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:32:28.450 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-18 01:32:28.490 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:32:28.490 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 01:32:28.490 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 01:32:28.580 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:32:28.580 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:28.580 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:32:28.580 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:32:28.590 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:32:28.590 -07 000000590 INF: Autofocus start
17-03-18 01:32:28.590 -07 000000590 INF: MeasureProfile start
17-03-18 01:32:28.590 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:32:28.600 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:32:28.600 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:32:28.600 -07 000000590 INF: MeasureProfile done
17-03-18 01:32:28.600 -07 000000590 INF: X=0  Z correction [um]=-0.0713522
17-03-18 01:32:28.600 -07 000000590 INF: Autofocus finished
17-03-18 01:32:28.800 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:32:28.800 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:32:28.800 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.175314607944609. ----------
17-03-18 01:32:28.800 -07 000000610 INF: Cycle	88	Tile	11	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:32:28.810 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36791, sync = True, waitForSettling = True)
17-03-18 01:32:28.810 -07 000000610 INF: Z Motor: Moving to -0.168418 mm, started at -0.175315 mm, distance = 6.90 um
17-03-18 01:32:28.810 -07 000000610 INF: FPGA: Xmit ZDACW 36791\n [Z Motor]
17-03-18 01:32:28.810 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 01:32:28.820 -07 000000610 INF: FPGA: 'ZDACW 36791' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:32:28.820 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:28.820 -07 000000424 INF: FPGA: Recv ZDACR 36791
17-03-18 01:32:28.830 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:28.830 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:32:28.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:28.980 -07 000000487 INF: FPGA: Recv ZSGSRD 35510
17-03-18 01:32:28.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:28.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:28.990 -07 000000487 INF: FPGA: Recv ZSGSRD 35506
17-03-18 01:32:29.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:29.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:29.000 -07 000000590 INF: FPGA: Recv ZSGSRD 35506
17-03-18 01:32:29.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:29.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:29.010 -07 000000626 INF: FPGA: Recv ZSGSRD 35506
17-03-18 01:32:29.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:29.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:29.020 -07 000000611 INF: FPGA: Recv ZSGSRD 35508
17-03-18 01:32:29.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:29.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:29.030 -07 000000626 INF: FPGA: Recv ZSGSRD 35506
17-03-18 01:32:29.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:29.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:29.040 -07 000000590 INF: FPGA: Recv ZSGSRD 35508
17-03-18 01:32:29.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:29.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:29.050 -07 000000424 INF: FPGA: Recv ZSGSRD 35509
17-03-18 01:32:29.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:29.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:29.060 -07 000000424 INF: FPGA: Recv ZSGSRD 35505
17-03-18 01:32:29.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:29.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:29.070 -07 000000611 INF: FPGA: Recv ZSGSRD 35508
17-03-18 01:32:29.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:29.080 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:29.080 -07 000000424 INF: FPGA: Recv ZPIEZORD 31264
17-03-18 01:32:29.090 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:29.090 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.614 V. Piezo Error = -9.4 V.
17-03-18 01:32:29.090 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35507 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35507 (-167.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35505 (-167.5 uncal um), Max = 35510 (-167.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 01:32:29.090 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35507, posNoise = 3, negNoise = 2
17-03-18 01:32:29.090 -07 000000610 INF: Z Motor: After move to -0.168418, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:29.090 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:32:29.090 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:32:29.090 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:32:29.090 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:32:29.090 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:32:29.090 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:32:29.090 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:32:29.090 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:32:29.090 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:32:29.090 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:32:29.090 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:32:29.090 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:32:29.090 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:32:29.100 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:32:29.100 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:32:29.100 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:32:29.100 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:32:29.110 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:32:29.110 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 01:32:29.110 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:32:29.110 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:32:29.110 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36968 150\n [Camera]
17-03-18 01:32:29.310 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:32:29.700 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:32:29.700 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:32:29.700 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:32:29.700 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:32:29.700 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:29.700 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:29.710 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:29.710 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1443674384, 0x0, 391868352) start.
17-03-18 01:32:29.710 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:29.710 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:32:29.890 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36968 775
17-03-18 01:32:30.040 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:32:30.080 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 01:32:30.080 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 01:32:30.080 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:30.080 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1443674384, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 01:32:30.080 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 01:32:30.080 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:30.090 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:30.090 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:30.090 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 01:32:30.090 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 01:32:30.230 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:32:30.230 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:32:30.230 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:30.340 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:32:30.340 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:32:30.340 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:30.350 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:30.350 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:32:30.350 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:30.350 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:32:30.420 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:32:30.420 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:32:30.420 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36968 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-18 01:32:30.420 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.168938
17-03-18 01:32:30.420 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16894 mm
17-03-18 01:32:30.420 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:32:30.430 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 01:32:30.430 -07 000000487 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-18 01:32:30.430 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:30.430 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 36905, sync = True, waitForSettling = False)
17-03-18 01:32:30.430 -07 000000561 INF: Z Motor: Moving to -0.168940 mm, started at -0.168428 mm, distance = -0.51 um
17-03-18 01:32:30.430 -07 000000626 INF: FPGA: Recv YRDPOS 139685
17-03-18 01:32:30.440 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:32:30.440 -07 000000487 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:30.440 -07 000000487 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:32:30.440 -07 000000487 INF: Y Motor: Moving 1339 steps-15
17-03-18 01:32:30.440 -07 000000561 INF: FPGA: Xmit ZDACW 36905\n [Z Motor]
17-03-18 01:32:30.440 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:32:30.450 -07 000000561 INF: FPGA: 'ZDACW 36905' command took 1 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 01:32:30.450 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:32:30.460 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:30.460 -07 000000501 INF: FPGA: Recv ZDACR 36905
17-03-18 01:32:30.470 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:32:30.470 -07 000000561 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 01:32:30.650 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.011254,
17-03-18 01:32:30.740 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:32:30.740 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:32:30.740 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:30.750 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:32:30.750 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:32:30.750 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:30.750 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:32:30.750 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-18 01:32:30.750 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:30.760 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 01:32:30.820 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 01:32:30.820 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-18 01:32:30.870 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:30.870 -07 000000625 INF: FPGA: Recv YRDPOS 141367
17-03-18 01:32:30.880 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:30.880 -07 000000487 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:30.880 -07 000000487 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 01:32:30.880 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.837 mm, average velocity = 2.157 mm/sec
17-03-18 01:32:31.830 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:31.830 -07 000000611 INF: FPGA: Recv YRDPOS 141368
17-03-18 01:32:31.840 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:31.840 -07 000000487 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:31.860 -07 000000487 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:32:31.860 -07 000000487 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:32:31.860 -07 000000487 INF: Y Motor: Moved to 69.0273 after 1435 ms (table move)
17-03-18 01:32:31.860 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168940 mm (DAC = 36905)
17-03-18 01:32:31.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:31.870 -07 000000487 INF: FPGA: Recv ZSGSRD 35592
17-03-18 01:32:31.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-18 01:32:31.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:31.870 -07 000000467 INF: FPGA: Recv ZSGSRD 35588
17-03-18 01:32:31.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:32:31.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:31.880 -07 000000424 INF: FPGA: Recv ZSGSRD 35595
17-03-18 01:32:31.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:31.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:31.890 -07 000000424 INF: FPGA: Recv ZSGSRD 35588
17-03-18 01:32:31.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:31.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:31.900 -07 000000585 INF: FPGA: Recv ZSGSRD 35593
17-03-18 01:32:31.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:31.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:31.910 -07 000000585 INF: FPGA: Recv ZSGSRD 35591
17-03-18 01:32:31.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:31.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:31.920 -07 000000585 INF: FPGA: Recv ZSGSRD 35591
17-03-18 01:32:31.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:31.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:31.930 -07 000000585 INF: FPGA: Recv ZSGSRD 35587
17-03-18 01:32:31.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:31.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:31.940 -07 000000561 INF: FPGA: Recv ZSGSRD 35580
17-03-18 01:32:31.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:31.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:31.950 -07 000000561 INF: FPGA: Recv ZSGSRD 35590
17-03-18 01:32:31.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:31.960 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:31.960 -07 000000561 INF: FPGA: Recv ZPIEZORD 31389
17-03-18 01:32:31.970 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:31.970 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.631 V. Piezo Error = -9.3 V.
17-03-18 01:32:31.970 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35590 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35590 (-168.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35580 (-168.0 uncal um), Max = 35595 (-168.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 01:32:31.970 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35590, posNoise = 5, negNoise = 10
17-03-18 01:32:31.970 -07 000000610 INF: Z Motor: After move to -0.168940, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:31.970 -07 000000610 INF: Z Motor: Settle wait time = 1436 ms, measure time = 103 ms (allowed 150 ms), total time = 1539 ms
17-03-18 01:32:31.970 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 01:32:32.020 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-18 01:32:32.020 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:32:32.020 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.168961062136407. ----------
17-03-18 01:32:32.020 -07 000000610 INF: Cycle	88	Tile	12	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:32:32.020 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36728, sync = True, waitForSettling = True)
17-03-18 01:32:32.020 -07 000000610 INF: Z Motor: Moving to -0.168130 mm, started at -0.168961 mm, distance = 0.83 um
17-03-18 01:32:32.020 -07 000000610 INF: FPGA: Xmit ZDACW 36728\n [Z Motor]
17-03-18 01:32:32.020 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 01:32:32.030 -07 000000610 INF: FPGA: 'ZDACW 36728' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:32:32.030 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:32.030 -07 000000611 INF: FPGA: Recv ZDACR 36728
17-03-18 01:32:32.040 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:32.040 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:32:32.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:32.190 -07 000000625 INF: FPGA: Recv ZSGSRD 35461
17-03-18 01:32:32.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:32.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:32.200 -07 000000626 INF: FPGA: Recv ZSGSRD 35464
17-03-18 01:32:32.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:32.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:32.210 -07 000000626 INF: FPGA: Recv ZSGSRD 35463
17-03-18 01:32:32.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:32.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:32.220 -07 000000625 INF: FPGA: Recv ZSGSRD 35463
17-03-18 01:32:32.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:32.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:32.230 -07 000000625 INF: FPGA: Recv ZSGSRD 35469
17-03-18 01:32:32.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:32.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:32.240 -07 000000626 INF: FPGA: Recv ZSGSRD 35464
17-03-18 01:32:32.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:32.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:32.250 -07 000000487 INF: FPGA: Recv ZSGSRD 35460
17-03-18 01:32:32.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:32.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:32.260 -07 000000487 INF: FPGA: Recv ZSGSRD 35462
17-03-18 01:32:32.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:32.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:32.270 -07 000000487 INF: FPGA: Recv ZSGSRD 35458
17-03-18 01:32:32.270 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:32:32.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:32:32.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:32.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:32.280 -07 000000585 INF: FPGA: Recv ZSGSRD 35469
17-03-18 01:32:32.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:32.290 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:32.290 -07 000000585 INF: FPGA: Recv ZPIEZORD 31175
17-03-18 01:32:32.300 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:32.300 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.604 V. Piezo Error = -9.4 V.
17-03-18 01:32:32.300 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35463 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35463 (-167.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35458 (-167.2 uncal um), Max = 35469 (-167.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:32:32.300 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35463, posNoise = 6, negNoise = 5
17-03-18 01:32:32.300 -07 000000610 INF: Z Motor: After move to -0.168130, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:32.300 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 01:32:32.300 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:32:32.300 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:32:32.300 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:32:32.300 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:32:32.300 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:32:32.300 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:32:32.300 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:32:32.300 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:32:32.300 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:32:32.300 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:32:32.300 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:32:32.300 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:32:32.310 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:32:32.310 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:32:32.310 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:32:32.310 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:32:32.320 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:32:32.320 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:32:32.320 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:32:32.320 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:32:32.320 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36905 150\n [Camera]
17-03-18 01:32:32.520 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:32:32.910 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:32:32.910 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:32:32.920 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:32.920 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:32:32.920 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:32:32.920 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:32.920 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:32.920 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1439269080, 0x0, 391868352) start.
17-03-18 01:32:32.920 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:32.920 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:32:33.110 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36905 775
17-03-18 01:32:33.260 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:32:33.290 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 368 ms.
17-03-18 01:32:33.290 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-18 01:32:33.290 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:33.300 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:32:33.300 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1439269080, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 01:32:33.300 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 01:32:33.300 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:33.300 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:32:33.300 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 01:32:33.300 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 01:32:33.440 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:32:33.440 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:32:33.450 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:33.450 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:32:33.450 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:32:33.450 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:33.560 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:33.560 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 01:32:33.560 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:33.560 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 01:32:33.640 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:32:33.640 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:32:33.640 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36905 150' command took 2 ms to send, 1301 ms to get response, and 1312 ms overall
17-03-18 01:32:33.640 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.168637
17-03-18 01:32:33.640 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.16864 mm
17-03-18 01:32:33.640 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:32:33.640 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 01:32:33.640 -07 000000576 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 01:32:33.640 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:33.640 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 36839, sync = True, waitForSettling = False)
17-03-18 01:32:33.640 -07 000000467 INF: Z Motor: Moving to -0.168638 mm, started at -0.168145 mm, distance = -0.49 um
17-03-18 01:32:33.650 -07 000000467 INF: FPGA: Xmit ZDACW 36839\n [Z Motor]
17-03-18 01:32:33.950 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:32:33.960 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:32:33.960 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:33.960 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 01:32:33.960 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 01:32:33.960 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:33.960 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:32:33.960 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-18 01:32:33.960 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:32:33.970 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 521 ms.
17-03-18 01:32:33.980 -07 000000561 INF: FPGA: Recv YRDPOS 141368
17-03-18 01:32:33.980 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 01:32:33.980 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 338 ms to get response, and 342 ms overall
17-03-18 01:32:33.980 -07 000000576 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:33.980 -07 000000576 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:32:33.980 -07 000000576 INF: Y Motor: Moving 1352 steps-32
17-03-18 01:32:33.980 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:32:33.980 -07 000000467 INF: FPGA: 'ZDACW 36839' command took 0 ms to send, 328 ms to get response, and 341 ms overall
17-03-18 01:32:33.990 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:33.990 -07 000000561 INF: FPGA: Recv ZDACR 36839
17-03-18 01:32:34.000 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:34.000 -07 000000467 INF: Z Motor: MoveAbsStepped took 353 ms (did NOT wait for settling yet))
17-03-18 01:32:34.360 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 01:32:34.360 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 377 ms to get response, and 378 ms overall
17-03-18 01:32:34.410 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:34.410 -07 000000501 INF: FPGA: Recv YRDPOS 143079
17-03-18 01:32:34.420 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:34.420 -07 000000576 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:34.420 -07 000000576 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 01:32:34.420 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.845 mm, average velocity = 2.236 mm/sec
17-03-18 01:32:35.370 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:35.370 -07 000000501 INF: FPGA: Recv YRDPOS 143080
17-03-18 01:32:35.380 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:35.380 -07 000000576 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:35.400 -07 000000576 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:32:35.400 -07 000000576 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:32:35.400 -07 000000576 INF: Y Motor: Moved to 69.8633 after 1761 ms (table move)
17-03-18 01:32:35.400 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168638 mm (DAC = 36839)
17-03-18 01:32:35.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:35.410 -07 000000474 INF: FPGA: Recv ZSGSRD 35539
17-03-18 01:32:35.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 01:32:35.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:35.410 -07 000000512 INF: FPGA: Recv ZSGSRD 35551
17-03-18 01:32:35.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:32:35.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:35.420 -07 000000501 INF: FPGA: Recv ZSGSRD 35537
17-03-18 01:32:35.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:35.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:35.430 -07 000000474 INF: FPGA: Recv ZSGSRD 35541
17-03-18 01:32:35.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:35.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:35.440 -07 000000561 INF: FPGA: Recv ZSGSRD 35549
17-03-18 01:32:35.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:35.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:35.450 -07 000000512 INF: FPGA: Recv ZSGSRD 35545
17-03-18 01:32:35.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:35.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:35.460 -07 000000474 INF: FPGA: Recv ZSGSRD 35547
17-03-18 01:32:35.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:35.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:35.470 -07 000000502 INF: FPGA: Recv ZSGSRD 35540
17-03-18 01:32:35.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:35.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:35.480 -07 000000512 INF: FPGA: Recv ZSGSRD 35543
17-03-18 01:32:35.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:35.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:35.490 -07 000000501 INF: FPGA: Recv ZSGSRD 35538
17-03-18 01:32:35.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:35.500 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:35.500 -07 000000502 INF: FPGA: Recv ZPIEZORD 31314
17-03-18 01:32:35.510 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:35.510 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.621 V. Piezo Error = -9.3 V.
17-03-18 01:32:35.510 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35543 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35542 (-167.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35537 (-167.7 uncal um), Max = 35551 (-167.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:32:35.510 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35543, posNoise = 8, negNoise = 6
17-03-18 01:32:35.510 -07 000000610 INF: Z Motor: After move to -0.168638, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:35.510 -07 000000610 INF: Z Motor: Settle wait time = 1762 ms, measure time = 102 ms (allowed 150 ms), total time = 1864 ms
17-03-18 01:32:35.510 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 01:32:35.560 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1916 ms
17-03-18 01:32:35.560 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:32:35.560 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.168659124165745. ----------
17-03-18 01:32:35.560 -07 000000610 INF: Cycle	88	Tile	13	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:32:35.560 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36662, sync = True, waitForSettling = True)
17-03-18 01:32:35.560 -07 000000610 INF: Z Motor: Moving to -0.167828 mm, started at -0.168659 mm, distance = 0.83 um
17-03-18 01:32:35.560 -07 000000610 INF: FPGA: Xmit ZDACW 36662\n [Z Motor]
17-03-18 01:32:35.560 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 01:32:35.570 -07 000000610 INF: FPGA: 'ZDACW 36662' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:32:35.570 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:35.570 -07 000000467 INF: FPGA: Recv ZDACR 36662
17-03-18 01:32:35.580 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:35.580 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:32:35.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:35.730 -07 000000467 INF: FPGA: Recv ZSGSRD 35408
17-03-18 01:32:35.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:35.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:35.740 -07 000000501 INF: FPGA: Recv ZSGSRD 35414
17-03-18 01:32:35.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:35.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:35.750 -07 000000467 INF: FPGA: Recv ZSGSRD 35416
17-03-18 01:32:35.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:35.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:35.760 -07 000000576 INF: FPGA: Recv ZSGSRD 35417
17-03-18 01:32:35.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:35.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:35.770 -07 000000502 INF: FPGA: Recv ZSGSRD 35412
17-03-18 01:32:35.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:35.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:35.780 -07 000000576 INF: FPGA: Recv ZSGSRD 35413
17-03-18 01:32:35.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:35.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:35.790 -07 000000512 INF: FPGA: Recv ZSGSRD 35418
17-03-18 01:32:35.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:35.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:35.800 -07 000000502 INF: FPGA: Recv ZSGSRD 35416
17-03-18 01:32:35.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:35.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:35.810 -07 000000474 INF: FPGA: Recv ZSGSRD 35413
17-03-18 01:32:35.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:35.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:35.820 -07 000000512 INF: FPGA: Recv ZSGSRD 35413
17-03-18 01:32:35.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:35.830 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:35.830 -07 000000501 INF: FPGA: Recv ZPIEZORD 31156
17-03-18 01:32:35.840 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:35.840 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.594 V. Piezo Error = -9.4 V.
17-03-18 01:32:35.840 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35414 (-167.0 uncal um), Error = 0.9 uncal um, Median = 35414 (-167.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35408 (-166.9 uncal um), Max = 35418 (-167.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:32:35.840 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35414, posNoise = 4, negNoise = 6
17-03-18 01:32:35.840 -07 000000610 INF: Z Motor: After move to -0.167828, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:35.840 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 01:32:35.840 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:32:35.840 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:32:35.840 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:32:35.840 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:32:35.840 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:32:35.840 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:32:35.840 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:32:35.840 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:32:35.840 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:32:35.840 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:32:35.840 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:32:35.840 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:32:35.850 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:32:35.850 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:32:35.850 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:32:35.850 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:32:35.860 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:32:35.860 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:32:35.860 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:32:35.860 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:32:35.870 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36839 150\n [Camera]
17-03-18 01:32:36.010 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.007176,
17-03-18 01:32:36.060 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:32:36.460 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:32:36.460 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:32:36.460 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:36.460 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:32:36.460 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:32:36.460 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:36.460 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:36.460 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 01:32:36.470 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:36.470 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 01:32:36.650 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36839 775
17-03-18 01:32:36.800 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:32:36.850 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 01:32:36.850 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 01:32:36.850 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:36.850 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 01:32:36.850 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 01:32:36.860 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:36.860 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:32:36.860 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:32:36.860 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:32:36.870 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:32:36.990 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:32:36.990 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:32:36.990 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:36.990 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:32:36.990 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:32:36.990 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:36.990 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:36.990 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 01:32:37.000 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:37.000 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:32:37.180 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:32:37.180 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:32:37.180 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36839 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-18 01:32:37.180 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.167853
17-03-18 01:32:37.180 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.16785 mm
17-03-18 01:32:37.180 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:32:37.180 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 01:32:37.180 -07 000000467 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-18 01:32:37.180 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 36668, sync = True, waitForSettling = False)
17-03-18 01:32:37.180 -07 000000502 INF: Z Motor: Moving to -0.167855 mm, started at -0.167830 mm, distance = -0.02 um
17-03-18 01:32:37.180 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:37.190 -07 000000502 INF: FPGA: Xmit ZDACW 36668\n [Z Motor]
17-03-18 01:32:37.190 -07 000000479 INF: FPGA: Recv YRDPOS 143080
17-03-18 01:32:37.190 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:32:37.190 -07 000000467 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:37.190 -07 000000467 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:32:37.190 -07 000000467 INF: Y Motor: Moving 1343 steps-20
17-03-18 01:32:37.190 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 01:32:37.200 -07 000000502 INF: FPGA: 'ZDACW 36668' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:32:37.200 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:32:37.210 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:37.210 -07 000000611 INF: FPGA: Recv ZDACR 36668
17-03-18 01:32:37.220 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:32:37.220 -07 000000502 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-18 01:32:37.270 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:32:37.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:32:37.380 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 01:32:37.380 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 01:32:37.380 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:37.380 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 01:32:37.380 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 01:32:37.380 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:37.380 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:37.380 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:37.380 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:32:37.390 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:32:37.570 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 01:32:37.570 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 01:32:37.620 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:37.620 -07 000000502 INF: FPGA: Recv YRDPOS 144769
17-03-18 01:32:37.630 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:37.630 -07 000000467 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:37.630 -07 000000467 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 01:32:37.630 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.839 mm, average velocity = 2.174 mm/sec
17-03-18 01:32:38.580 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:38.580 -07 000000502 INF: FPGA: Recv YRDPOS 144770
17-03-18 01:32:38.590 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:38.590 -07 000000467 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:38.610 -07 000000467 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:32:38.610 -07 000000467 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:32:38.610 -07 000000467 INF: Y Motor: Moved to 70.6885 after 1428 ms (table move)
17-03-18 01:32:38.610 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167855 mm (DAC = 36668)
17-03-18 01:32:38.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:38.620 -07 000000502 INF: FPGA: Recv ZSGSRD 35416
17-03-18 01:32:38.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 01:32:38.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:38.620 -07 000000467 INF: FPGA: Recv ZSGSRD 35422
17-03-18 01:32:38.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:32:38.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:38.630 -07 000000467 INF: FPGA: Recv ZSGSRD 35423
17-03-18 01:32:38.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:38.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:38.640 -07 000000585 INF: FPGA: Recv ZSGSRD 35422
17-03-18 01:32:38.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:38.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:38.650 -07 000000467 INF: FPGA: Recv ZSGSRD 35424
17-03-18 01:32:38.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:38.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:38.660 -07 000000467 INF: FPGA: Recv ZSGSRD 35421
17-03-18 01:32:38.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:38.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:38.670 -07 000000585 INF: FPGA: Recv ZSGSRD 35415
17-03-18 01:32:38.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:38.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:38.680 -07 000000467 INF: FPGA: Recv ZSGSRD 35421
17-03-18 01:32:38.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:38.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:38.690 -07 000000585 INF: FPGA: Recv ZSGSRD 35414
17-03-18 01:32:38.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:38.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:38.700 -07 000000467 INF: FPGA: Recv ZSGSRD 35420
17-03-18 01:32:38.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:38.710 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:38.710 -07 000000585 INF: FPGA: Recv ZPIEZORD 31130
17-03-18 01:32:38.720 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:38.720 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.595 V. Piezo Error = -9.4 V.
17-03-18 01:32:38.720 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35420 (-167.0 uncal um), Error = 0.9 uncal um, Median = 35421 (-167.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35414 (-167.0 uncal um), Max = 35424 (-167.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:32:38.720 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35420, posNoise = 4, negNoise = 6
17-03-18 01:32:38.720 -07 000000610 INF: Z Motor: After move to -0.167855, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:38.720 -07 000000610 INF: Z Motor: Settle wait time = 1431 ms, measure time = 102 ms (allowed 150 ms), total time = 1533 ms
17-03-18 01:32:38.720 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 01:32:38.770 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-18 01:32:38.770 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:32:38.770 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.167868946072308. ----------
17-03-18 01:32:38.770 -07 000000610 INF: Cycle	88	Tile	14	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:32:38.770 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36491, sync = True, waitForSettling = True)
17-03-18 01:32:38.770 -07 000000610 INF: Z Motor: Moving to -0.167045 mm, started at -0.167869 mm, distance = 0.82 um
17-03-18 01:32:38.770 -07 000000610 INF: FPGA: Xmit ZDACW 36491\n [Z Motor]
17-03-18 01:32:38.770 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:32:38.780 -07 000000610 INF: FPGA: 'ZDACW 36491' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:32:38.780 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:38.780 -07 000000502 INF: FPGA: Recv ZDACR 36491
17-03-18 01:32:38.790 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:38.790 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:32:38.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:38.940 -07 000000474 INF: FPGA: Recv ZSGSRD 35294
17-03-18 01:32:38.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:38.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:38.950 -07 000000585 INF: FPGA: Recv ZSGSRD 35294
17-03-18 01:32:38.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:38.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:38.960 -07 000000487 INF: FPGA: Recv ZSGSRD 35296
17-03-18 01:32:38.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:38.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:38.970 -07 000000585 INF: FPGA: Recv ZSGSRD 35287
17-03-18 01:32:38.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:38.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:38.980 -07 000000591 INF: FPGA: Recv ZSGSRD 35293
17-03-18 01:32:38.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:38.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:38.990 -07 000000467 INF: FPGA: Recv ZSGSRD 35293
17-03-18 01:32:39.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:39.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:39.000 -07 000000591 INF: FPGA: Recv ZSGSRD 35291
17-03-18 01:32:39.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:39.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:39.010 -07 000000474 INF: FPGA: Recv ZSGSRD 35288
17-03-18 01:32:39.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:39.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:39.020 -07 000000591 INF: FPGA: Recv ZSGSRD 35295
17-03-18 01:32:39.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:39.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:39.030 -07 000000585 INF: FPGA: Recv ZSGSRD 35294
17-03-18 01:32:39.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:39.040 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:39.040 -07 000000467 INF: FPGA: Recv ZPIEZORD 30984
17-03-18 01:32:39.050 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:39.050 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.568 V. Piezo Error = -9.5 V.
17-03-18 01:32:39.050 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35292 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35294 (-166.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35287 (-166.1 uncal um), Max = 35296 (-166.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:32:39.050 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35292, posNoise = 4, negNoise = 5
17-03-18 01:32:39.050 -07 000000610 INF: Z Motor: After move to -0.167045, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:39.050 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 01:32:39.050 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:32:39.050 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:32:39.050 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:32:39.050 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:32:39.050 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:32:39.050 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:32:39.050 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:32:39.050 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:32:39.050 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:32:39.050 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:32:39.050 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:32:39.050 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:32:39.060 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:32:39.060 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:32:39.060 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:32:39.060 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:32:39.070 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:32:39.070 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:32:39.070 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:32:39.070 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:32:39.070 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36668 150\n [Camera]
17-03-18 01:32:39.270 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:32:39.660 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:32:39.660 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:32:39.660 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:39.670 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:32:39.670 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:32:39.670 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:39.670 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:39.670 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 01:32:39.670 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:39.670 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 01:32:39.860 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36668 776
17-03-18 01:32:40.010 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:32:40.040 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 01:32:40.040 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 01:32:40.040 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:40.040 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 01:32:40.040 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 01:32:40.040 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:40.050 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:40.050 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 01:32:40.050 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:40.060 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 01:32:40.190 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:32:40.190 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:32:40.200 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:40.200 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:40.200 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:32:40.200 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:32:40.200 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:32:40.200 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:40.200 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:40.200 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-18 01:32:40.390 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:32:40.390 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:32:40.390 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36668 150' command took 2 ms to send, 1301 ms to get response, and 1312 ms overall
17-03-18 01:32:40.390 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:32:40.390 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.167046646918163. ------
17-03-18 01:32:40.390 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:32:40.390 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17371 mm
17-03-18 01:32:40.390 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:32:40.400 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 01:32:40.400 -07 000000585 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 01:32:40.400 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:40.400 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:32:40.400 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:32:40.400 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 37947, sync = True, waitForSettling = False)
17-03-18 01:32:40.400 -07 000000591 INF: Z Motor: Moving to -0.173710 mm, started at -0.167047 mm, distance = -6.66 um
17-03-18 01:32:40.400 -07 000000479 INF: FPGA: Recv YRDPOS 144770
17-03-18 01:32:40.410 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:40.410 -07 000000585 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:40.410 -07 000000585 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:32:40.410 -07 000000585 INF: Y Motor: Moving 1351 steps-30
17-03-18 01:32:40.410 -07 000000591 INF: FPGA: Xmit ZDACW 37947\n [Z Motor]
17-03-18 01:32:40.410 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:32:40.420 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:32:40.420 -07 000000591 INF: FPGA: 'ZDACW 37947' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:32:40.430 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:32:40.440 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:40.440 -07 000000590 INF: FPGA: Recv ZDACR 37947
17-03-18 01:32:40.450 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:32:40.450 -07 000000591 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 01:32:40.580 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 01:32:40.580 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 01:32:40.580 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:40.580 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 01:32:40.580 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 01:32:40.580 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:40.580 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:40.580 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 01:32:40.580 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:40.590 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 01:32:40.620 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:32:40.620 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:32:40.800 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 01:32:40.800 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:32:40.850 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:40.850 -07 000000502 INF: FPGA: Recv YRDPOS 146470
17-03-18 01:32:40.860 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:32:40.860 -07 000000585 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:40.860 -07 000000585 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 01:32:40.860 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 01:32:41.370 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.000345,
17-03-18 01:32:41.810 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:41.810 -07 000000625 INF: FPGA: Recv YRDPOS 146471
17-03-18 01:32:41.820 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:41.820 -07 000000585 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:41.840 -07 000000585 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:32:41.840 -07 000000585 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:32:41.840 -07 000000585 INF: Y Motor: Moved to 71.5190 after 1447 ms (table move)
17-03-18 01:32:41.850 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173710 mm (DAC = 37947)
17-03-18 01:32:41.850 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:41.850 -07 000000629 INF: FPGA: Recv ZSGSRD 36339
17-03-18 01:32:41.860 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:32:41.860 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:41.860 -07 000000625 INF: FPGA: Recv ZSGSRD 36329
17-03-18 01:32:41.870 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:41.870 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:41.870 -07 000000502 INF: FPGA: Recv ZSGSRD 36334
17-03-18 01:32:41.880 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:41.880 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:41.880 -07 000000502 INF: FPGA: Recv ZSGSRD 36327
17-03-18 01:32:41.890 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:41.890 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:41.890 -07 000000502 INF: FPGA: Recv ZSGSRD 36337
17-03-18 01:32:41.900 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:41.900 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:41.900 -07 000000502 INF: FPGA: Recv ZSGSRD 36334
17-03-18 01:32:41.910 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:41.910 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:41.910 -07 000000629 INF: FPGA: Recv ZSGSRD 36330
17-03-18 01:32:41.920 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:41.920 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:41.920 -07 000000502 INF: FPGA: Recv ZSGSRD 36326
17-03-18 01:32:41.930 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:41.930 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:41.930 -07 000000502 INF: FPGA: Recv ZSGSRD 36329
17-03-18 01:32:41.940 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:41.940 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:41.940 -07 000000629 INF: FPGA: Recv ZSGSRD 36335
17-03-18 01:32:41.950 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:41.950 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:41.950 -07 000000629 INF: FPGA: Recv ZPIEZORD 32393
17-03-18 01:32:41.960 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:41.960 -07 000000467 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.790 V. Piezo Error = -8.7 V.
17-03-18 01:32:41.960 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36332 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36332 (-172.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36326 (-172.8 uncal um), Max = 36339 (-172.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:32:41.960 -07 000000467 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36332, posNoise = 7, negNoise = 6
17-03-18 01:32:41.960 -07 000000467 INF: Z Motor: After move to -0.173710, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:41.960 -07 000000467 INF: Z Motor: Settle wait time = 1451 ms, measure time = 108 ms (allowed 150 ms), total time = 1559 ms
17-03-18 01:32:41.960 -07 000000467 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:32:42.010 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 01:32:42.010 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:32:42.010 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:32:42.010 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:32:42.010 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:32:42.010 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:32:42.010 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:32:42.010 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:32:42.010 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:32:42.010 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:32:42.020 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:32:42.020 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:32:42.030 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:32:42.030 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 01:32:42.030 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:32:42.080 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:32:42.270 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:32:42.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:32:42.380 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:32:42.380 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:32:42.380 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:32:42.490 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:32:42.490 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 01:32:42.490 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 01:32:42.490 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 452 ms to get response, and 454 ms overall
17-03-18 01:32:42.620 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 128 ms.
17-03-18 01:32:42.620 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:42.620 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:32:42.620 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 238 ms.
17-03-18 01:32:42.690 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:32:42.690 -07 000000502 INF: Autofocus start
17-03-18 01:32:42.690 -07 000000502 INF: MeasureProfile start
17-03-18 01:32:42.690 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:32:42.700 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:32:42.700 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:32:42.700 -07 000000502 INF: MeasureProfile done
17-03-18 01:32:42.700 -07 000000502 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 01:32:42.700 -07 000000502 INF: Autofocus finished
17-03-18 01:32:42.900 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:32:42.900 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:32:42.900 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.173727827545594. ----------
17-03-18 01:32:42.900 -07 000000610 INF: Cycle	88	Tile	15	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:32:42.910 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36427, sync = True, waitForSettling = True)
17-03-18 01:32:42.910 -07 000000610 INF: Z Motor: Moving to -0.166752 mm, started at -0.173728 mm, distance = 6.98 um
17-03-18 01:32:42.910 -07 000000610 INF: FPGA: Xmit ZDACW 36427\n [Z Motor]
17-03-18 01:32:42.910 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:32:42.920 -07 000000610 INF: FPGA: 'ZDACW 36427' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:32:42.920 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:42.920 -07 000000502 INF: FPGA: Recv ZDACR 36427
17-03-18 01:32:42.930 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:42.930 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:32:43.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:43.080 -07 000000502 INF: FPGA: Recv ZSGSRD 35248
17-03-18 01:32:43.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:43.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:43.090 -07 000000502 INF: FPGA: Recv ZSGSRD 35247
17-03-18 01:32:43.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:43.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:43.100 -07 000000629 INF: FPGA: Recv ZSGSRD 35248
17-03-18 01:32:43.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:43.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:43.110 -07 000000502 INF: FPGA: Recv ZSGSRD 35244
17-03-18 01:32:43.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:43.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:43.120 -07 000000467 INF: FPGA: Recv ZSGSRD 35252
17-03-18 01:32:43.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:43.130 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:43.130 -07 000000502 INF: FPGA: Recv ZSGSRD 35244
17-03-18 01:32:43.140 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:43.140 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:43.140 -07 000000467 INF: FPGA: Recv ZSGSRD 35248
17-03-18 01:32:43.150 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:43.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:43.150 -07 000000611 INF: FPGA: Recv ZSGSRD 35253
17-03-18 01:32:43.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:43.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:43.160 -07 000000467 INF: FPGA: Recv ZSGSRD 35245
17-03-18 01:32:43.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:43.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:43.170 -07 000000629 INF: FPGA: Recv ZSGSRD 35248
17-03-18 01:32:43.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:43.180 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:43.180 -07 000000502 INF: FPGA: Recv ZPIEZORD 30907
17-03-18 01:32:43.190 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:43.190 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.558 V. Piezo Error = -9.6 V.
17-03-18 01:32:43.190 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35248 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35248 (-165.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35244 (-165.9 uncal um), Max = 35253 (-165.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:32:43.190 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35248, posNoise = 5, negNoise = 4
17-03-18 01:32:43.190 -07 000000610 INF: Z Motor: After move to -0.166752, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:43.190 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:32:43.190 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:32:43.190 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:32:43.190 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:32:43.190 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:32:43.190 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:32:43.190 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:32:43.190 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:32:43.190 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:32:43.190 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:32:43.190 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:32:43.190 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:32:43.190 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:32:43.200 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:32:43.200 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:32:43.200 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:32:43.200 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:32:43.210 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:32:43.210 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:32:43.210 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:32:43.210 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:32:43.220 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36604 150\n [Camera]
17-03-18 01:32:43.420 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:32:43.810 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:32:43.810 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:32:43.810 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:43.810 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:32:43.810 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:32:43.810 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:43.820 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:43.820 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:32:43.820 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:43.820 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:32:44.000 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36604 775
17-03-18 01:32:44.150 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:32:44.190 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 01:32:44.190 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 01:32:44.190 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:44.190 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:32:44.190 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 01:32:44.190 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 01:32:44.190 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:44.200 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:32:44.200 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 01:32:44.200 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 01:32:44.340 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:32:44.340 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:32:44.340 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:44.340 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:32:44.340 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:32:44.340 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:44.460 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:44.460 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 01:32:44.460 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:44.460 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 01:32:44.530 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:32:44.530 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:32:44.530 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36604 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-18 01:32:44.530 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.167108
17-03-18 01:32:44.530 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.16711 mm
17-03-18 01:32:44.530 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:32:44.540 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 01:32:44.540 -07 000000467 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 01:32:44.540 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 36505, sync = True, waitForSettling = False)
17-03-18 01:32:44.540 -07 000000424 INF: Z Motor: Moving to -0.167109 mm, started at -0.166764 mm, distance = -0.35 um
17-03-18 01:32:44.540 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:44.540 -07 000000611 INF: FPGA: Recv YRDPOS 146471
17-03-18 01:32:44.550 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:44.550 -07 000000467 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:44.550 -07 000000467 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:32:44.550 -07 000000467 INF: Y Motor: Moving 1350 steps-29
17-03-18 01:32:44.550 -07 000000424 INF: FPGA: Xmit ZDACW 36505\n [Z Motor]
17-03-18 01:32:44.550 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 01:32:44.560 -07 000000424 INF: FPGA: 'ZDACW 36505' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:32:44.560 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:32:44.570 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:44.570 -07 000000502 INF: FPGA: Recv ZDACR 36505
17-03-18 01:32:44.580 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:32:44.580 -07 000000424 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 01:32:44.860 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:32:44.860 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:32:44.860 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:44.860 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:32:44.860 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:32:44.860 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:44.860 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:44.860 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:32:44.860 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 01:32:44.870 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 524 ms.
17-03-18 01:32:44.930 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 01:32:44.930 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 01:32:44.980 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:44.980 -07 000000502 INF: FPGA: Recv YRDPOS 148172
17-03-18 01:32:44.990 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:32:44.990 -07 000000467 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:44.990 -07 000000467 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 01:32:44.990 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.174 mm/sec
17-03-18 01:32:45.940 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:45.940 -07 000000611 INF: FPGA: Recv YRDPOS 148172
17-03-18 01:32:45.950 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:45.950 -07 000000467 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:45.970 -07 000000467 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:32:45.970 -07 000000467 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:32:45.970 -07 000000467 INF: Y Motor: Moved to 72.3496 after 1436 ms (table move)
17-03-18 01:32:45.970 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167109 mm (DAC = 36505)
17-03-18 01:32:45.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:45.980 -07 000000467 INF: FPGA: Recv ZSGSRD 35299
17-03-18 01:32:45.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:45.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:45.990 -07 000000626 INF: FPGA: Recv ZSGSRD 35302
17-03-18 01:32:46.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:46.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:46.000 -07 000000424 INF: FPGA: Recv ZSGSRD 35300
17-03-18 01:32:46.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:46.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:46.010 -07 000000569 INF: FPGA: Recv ZSGSRD 35303
17-03-18 01:32:46.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:46.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:46.020 -07 000000502 INF: FPGA: Recv ZSGSRD 35303
17-03-18 01:32:46.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:46.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:46.030 -07 000000611 INF: FPGA: Recv ZSGSRD 35308
17-03-18 01:32:46.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:46.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:46.040 -07 000000502 INF: FPGA: Recv ZSGSRD 35301
17-03-18 01:32:46.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:46.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:46.050 -07 000000467 INF: FPGA: Recv ZSGSRD 35299
17-03-18 01:32:46.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:46.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:46.060 -07 000000626 INF: FPGA: Recv ZSGSRD 35303
17-03-18 01:32:46.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:46.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:46.070 -07 000000467 INF: FPGA: Recv ZSGSRD 35305
17-03-18 01:32:46.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:46.080 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:46.080 -07 000000626 INF: FPGA: Recv ZPIEZORD 31060
17-03-18 01:32:46.090 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:46.090 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.570 V. Piezo Error = -9.4 V.
17-03-18 01:32:46.090 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35302 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35302 (-166.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35299 (-166.2 uncal um), Max = 35308 (-166.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:32:46.090 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35302, posNoise = 6, negNoise = 3
17-03-18 01:32:46.090 -07 000000610 INF: Z Motor: After move to -0.167109, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:46.090 -07 000000610 INF: Z Motor: Settle wait time = 1438 ms, measure time = 111 ms (allowed 150 ms), total time = 1549 ms
17-03-18 01:32:46.090 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:32:46.130 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-18 01:32:46.130 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:32:46.130 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.16711088903958. ----------
17-03-18 01:32:46.130 -07 000000610 INF: Cycle	88	Tile	16	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:32:46.130 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36328, sync = True, waitForSettling = True)
17-03-18 01:32:46.130 -07 000000610 INF: Z Motor: Moving to -0.166299 mm, started at -0.167111 mm, distance = 0.81 um
17-03-18 01:32:46.130 -07 000000610 INF: FPGA: Xmit ZDACW 36328\n [Z Motor]
17-03-18 01:32:46.130 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:32:46.140 -07 000000610 INF: FPGA: 'ZDACW 36328' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:32:46.140 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:46.140 -07 000000626 INF: FPGA: Recv ZDACR 36328
17-03-18 01:32:46.150 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:46.150 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:32:46.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:46.300 -07 000000626 INF: FPGA: Recv ZSGSRD 35179
17-03-18 01:32:46.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:46.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:46.310 -07 000000626 INF: FPGA: Recv ZSGSRD 35184
17-03-18 01:32:46.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:46.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:46.320 -07 000000626 INF: FPGA: Recv ZSGSRD 35171
17-03-18 01:32:46.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:46.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:46.330 -07 000000626 INF: FPGA: Recv ZSGSRD 35176
17-03-18 01:32:46.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:46.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:46.340 -07 000000626 INF: FPGA: Recv ZSGSRD 35182
17-03-18 01:32:46.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:46.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:46.350 -07 000000467 INF: FPGA: Recv ZSGSRD 35177
17-03-18 01:32:46.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:46.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:46.360 -07 000000467 INF: FPGA: Recv ZSGSRD 35182
17-03-18 01:32:46.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:46.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:46.370 -07 000000467 INF: FPGA: Recv ZSGSRD 35173
17-03-18 01:32:46.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:46.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:46.380 -07 000000467 INF: FPGA: Recv ZSGSRD 35173
17-03-18 01:32:46.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:46.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:46.390 -07 000000467 INF: FPGA: Recv ZSGSRD 35181
17-03-18 01:32:46.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:46.400 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:46.400 -07 000000467 INF: FPGA: Recv ZPIEZORD 30879
17-03-18 01:32:46.410 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:46.410 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.543 V. Piezo Error = -9.5 V.
17-03-18 01:32:46.410 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35178 (-165.4 uncal um), Error = 0.9 uncal um, Median = 35178 (-165.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35171 (-165.4 uncal um), Max = 35184 (-165.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:32:46.410 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35178, posNoise = 6, negNoise = 7
17-03-18 01:32:46.410 -07 000000610 INF: Z Motor: After move to -0.166299, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:46.410 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 01:32:46.410 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:32:46.410 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:32:46.410 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:32:46.410 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:32:46.410 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:32:46.410 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:32:46.420 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:32:46.420 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:32:46.420 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:32:46.420 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:32:46.430 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:32:46.430 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:32:46.430 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:32:46.430 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:32:46.430 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:32:46.430 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:32:46.430 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:32:46.430 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:32:46.440 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:32:46.440 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 01:32:46.440 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36505 150\n [Camera]
17-03-18 01:32:46.640 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:32:46.730 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 3.993549,
17-03-18 01:32:47.030 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:32:47.030 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:32:47.030 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:47.040 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:32:47.040 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:32:47.040 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:47.040 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:47.040 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 01:32:47.040 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:47.040 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:32:47.230 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36505 775
17-03-18 01:32:47.270 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:32:47.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:32:47.380 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:32:47.440 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 01:32:47.440 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:32:47.440 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:47.440 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:32:47.440 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:32:47.440 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:47.440 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:47.440 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:47.440 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 01:32:47.450 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:32:47.570 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:32:47.570 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:32:47.570 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:47.570 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:32:47.570 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:32:47.570 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:47.570 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:47.570 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 01:32:47.570 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:47.570 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 01:32:47.760 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:32:47.760 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:32:47.760 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36505 150' command took 2 ms to send, 1303 ms to get response, and 1314 ms overall
17-03-18 01:32:47.760 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.166755
17-03-18 01:32:47.760 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.16675 mm
17-03-18 01:32:47.760 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:32:47.760 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 01:32:47.760 -07 000000576 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-18 01:32:47.760 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:47.760 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 36428, sync = True, waitForSettling = False)
17-03-18 01:32:47.760 -07 000000585 INF: Z Motor: Moving to -0.166757 mm, started at -0.166314 mm, distance = -0.44 um
17-03-18 01:32:47.770 -07 000000585 INF: FPGA: Xmit ZDACW 36428\n [Z Motor]
17-03-18 01:32:47.770 -07 000000474 INF: FPGA: Recv YRDPOS 148172
17-03-18 01:32:47.770 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:32:47.770 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 01:32:47.770 -07 000000576 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:47.770 -07 000000576 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:32:47.770 -07 000000576 INF: Y Motor: Moving 1349 steps-27
17-03-18 01:32:47.780 -07 000000585 INF: FPGA: 'ZDACW 36428' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:32:47.780 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:47.780 -07 000000512 INF: FPGA: Recv ZDACR 36428
17-03-18 01:32:47.790 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:47.790 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:32:47.790 -07 000000585 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-18 01:32:47.970 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 01:32:47.970 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 01:32:47.970 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:47.970 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:32:47.970 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:32:47.970 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:47.970 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:47.970 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:47.970 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:32:47.980 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 01:32:48.160 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 01:32:48.160 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 01:32:48.210 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:48.210 -07 000000590 INF: FPGA: Recv YRDPOS 149864
17-03-18 01:32:48.220 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:48.220 -07 000000576 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:48.220 -07 000000576 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 01:32:48.220 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.843 mm, average velocity = 2.140 mm/sec
17-03-18 01:32:49.170 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:49.170 -07 000000590 INF: FPGA: Recv YRDPOS 149865
17-03-18 01:32:49.180 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:49.180 -07 000000576 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:49.200 -07 000000576 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:32:49.200 -07 000000576 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:32:49.210 -07 000000576 INF: Y Motor: Moved to 73.1763 after 1441 ms (table move)
17-03-18 01:32:49.210 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.166757 mm (DAC = 36428)
17-03-18 01:32:49.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:49.220 -07 000000487 INF: FPGA: Recv ZSGSRD 35245
17-03-18 01:32:49.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 01:32:49.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:49.230 -07 000000487 INF: FPGA: Recv ZSGSRD 35244
17-03-18 01:32:49.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:49.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:49.240 -07 000000487 INF: FPGA: Recv ZSGSRD 35254
17-03-18 01:32:49.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:49.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:50.170 -07 000000467 INF: FPGA: Recv ZSGSRD 35251
17-03-18 01:32:50.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 910 ms to get response, and 920 ms overall
17-03-18 01:32:50.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:50.170 -07 000000512 INF: FPGA: Recv ZSGSRD 35257
17-03-18 01:32:50.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:50.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:50.180 -07 000000576 INF: FPGA: Recv ZSGSRD 35251
17-03-18 01:32:50.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:50.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:50.190 -07 000000474 INF: FPGA: Recv ZSGSRD 35249
17-03-18 01:32:50.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:50.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:50.200 -07 000000487 INF: FPGA: Recv ZSGSRD 35251
17-03-18 01:32:50.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:50.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:50.210 -07 000000512 INF: FPGA: Recv ZSGSRD 35250
17-03-18 01:32:50.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:50.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:50.220 -07 000000487 INF: FPGA: Recv ZSGSRD 35255
17-03-18 01:32:50.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:50.230 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:50.230 -07 000000474 INF: FPGA: Recv ZPIEZORD 30975
17-03-18 01:32:50.240 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:50.240 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.559 V. Piezo Error = -9.4 V.
17-03-18 01:32:50.240 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35251 (-165.9 uncal um), Error = 0.8 uncal um, Median = 35251 (-165.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35244 (-165.9 uncal um), Max = 35257 (-166.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:32:50.240 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35251, posNoise = 6, negNoise = 7
17-03-18 01:32:50.240 -07 000000610 INF: Z Motor: After move to -0.166757, error = -0.000027, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:50.240 -07 000000610 INF: Z Motor: Settle wait time = 1445 ms, measure time = 1027 ms (allowed 150 ms), total time = 2472 ms
17-03-18 01:32:50.240 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 1027 ms, longer than max expected time of 150 ms
17-03-18 01:32:50.240 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2474 ms
17-03-18 01:32:50.240 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:32:50.240 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.16678325422035. ----------
17-03-18 01:32:50.240 -07 000000610 INF: Cycle	88	Tile	17	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:32:50.240 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36251, sync = True, waitForSettling = True)
17-03-18 01:32:50.240 -07 000000610 INF: Z Motor: Moving to -0.165946 mm, started at -0.166783 mm, distance = 0.84 um
17-03-18 01:32:50.240 -07 000000610 INF: FPGA: Xmit ZDACW 36251\n [Z Motor]
17-03-18 01:32:50.240 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:32:50.250 -07 000000610 INF: FPGA: 'ZDACW 36251' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:32:50.250 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:50.250 -07 000000585 INF: FPGA: Recv ZDACR 36251
17-03-18 01:32:50.260 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:50.260 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:32:50.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:50.410 -07 000000625 INF: FPGA: Recv ZSGSRD 35123
17-03-18 01:32:50.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:50.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:50.420 -07 000000487 INF: FPGA: Recv ZSGSRD 35118
17-03-18 01:32:50.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:50.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:50.430 -07 000000585 INF: FPGA: Recv ZSGSRD 35129
17-03-18 01:32:50.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:50.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:50.440 -07 000000590 INF: FPGA: Recv ZSGSRD 35120
17-03-18 01:32:50.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:50.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:50.450 -07 000000591 INF: FPGA: Recv ZSGSRD 35119
17-03-18 01:32:50.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:50.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:50.460 -07 000000590 INF: FPGA: Recv ZSGSRD 35125
17-03-18 01:32:50.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:50.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:50.470 -07 000000474 INF: FPGA: Recv ZSGSRD 35120
17-03-18 01:32:50.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:50.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:50.480 -07 000000576 INF: FPGA: Recv ZSGSRD 35127
17-03-18 01:32:50.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:50.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:50.490 -07 000000467 INF: FPGA: Recv ZSGSRD 35119
17-03-18 01:32:50.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:50.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:50.500 -07 000000585 INF: FPGA: Recv ZSGSRD 35122
17-03-18 01:32:50.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:50.510 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:50.510 -07 000000512 INF: FPGA: Recv ZPIEZORD 30812
17-03-18 01:32:50.520 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:50.520 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.532 V. Piezo Error = -9.5 V.
17-03-18 01:32:50.520 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.9 um, Read 10 ADC samples: Avg = 35122 (-165.1 uncal um), Error = 0.9 uncal um, Median = 35121 (-165.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35118 (-165.1 uncal um), Max = 35129 (-165.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:32:50.520 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35122, posNoise = 7, negNoise = 4
17-03-18 01:32:50.520 -07 000000610 INF: Z Motor: After move to -0.165946, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:50.520 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 01:32:50.520 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:32:50.520 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:32:50.520 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:32:50.520 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:32:50.520 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:32:50.520 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:32:50.520 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:32:50.520 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:32:50.520 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:32:50.520 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:32:50.520 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:32:50.520 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:32:50.520 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:32:50.530 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:32:50.530 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:32:50.530 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:32:50.530 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:32:50.530 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:32:50.530 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:32:50.530 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:32:50.540 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36428 150\n [Camera]
17-03-18 01:32:50.740 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:32:51.130 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:32:51.130 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:32:51.130 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:51.130 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:32:51.130 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:32:51.130 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:51.130 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:51.130 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:32:51.130 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:51.130 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 01:32:51.320 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36428 775
17-03-18 01:32:51.470 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:32:51.510 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 01:32:51.510 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 01:32:51.510 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:51.510 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 01:32:51.510 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 01:32:51.510 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:51.510 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:51.510 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:51.510 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 01:32:51.520 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 01:32:51.660 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1116
17-03-18 01:32:51.660 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1116
17-03-18 01:32:51.660 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:51.660 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:51.660 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-18 01:32:51.660 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1116
17-03-18 01:32:51.660 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1116
17-03-18 01:32:51.660 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:51.660 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:51.660 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-18 01:32:51.850 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:32:51.850 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:32:51.850 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36428 150' command took 2 ms to send, 1304 ms to get response, and 1313 ms overall
17-03-18 01:32:51.850 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.166379
17-03-18 01:32:51.850 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.16638 mm
17-03-18 01:32:51.850 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:32:51.850 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 01:32:51.850 -07 000000487 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 01:32:51.850 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:51.850 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 36346, sync = True, waitForSettling = False)
17-03-18 01:32:51.850 -07 000000512 INF: Z Motor: Moving to -0.166381 mm, started at -0.165955 mm, distance = -0.43 um
17-03-18 01:32:51.860 -07 000000512 INF: FPGA: Xmit ZDACW 36346\n [Z Motor]
17-03-18 01:32:51.860 -07 000000474 INF: FPGA: Recv YRDPOS 149865
17-03-18 01:32:51.860 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 3 ms overall
17-03-18 01:32:51.860 -07 000000487 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:51.860 -07 000000487 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:32:51.860 -07 000000487 INF: Y Motor: Moving 1354 steps-34
17-03-18 01:32:51.860 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:32:51.870 -07 000000512 INF: FPGA: 'ZDACW 36346' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:51.870 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:32:51.880 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:51.880 -07 000000591 INF: FPGA: Recv ZDACR 36346
17-03-18 01:32:51.890 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:32:51.890 -07 000000512 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-18 01:32:52.050 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 01:32:52.050 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 01:32:52.050 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:52.050 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 01:32:52.050 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 01:32:52.050 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:52.060 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:32:52.060 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:32:52.060 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:32:52.060 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:32:52.090 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 3.988112,
17-03-18 01:32:52.240 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 01:32:52.240 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 01:32:52.270 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:32:52.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:32:52.280 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:52.280 -07 000000590 INF: FPGA: Recv YRDPOS 151569
17-03-18 01:32:52.290 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:32:52.290 -07 000000487 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:52.290 -07 000000487 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 01:32:52.290 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.846 mm, average velocity = 2.204 mm/sec
17-03-18 01:32:53.240 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:53.240 -07 000000467 INF: FPGA: Recv YRDPOS 151569
17-03-18 01:32:53.250 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:53.250 -07 000000487 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:53.270 -07 000000487 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:32:53.270 -07 000000487 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:32:53.270 -07 000000487 INF: Y Motor: Moved to 74.0083 after 1412 ms (table move)
17-03-18 01:32:53.270 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.166381 mm (DAC = 36346)
17-03-18 01:32:53.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:53.280 -07 000000591 INF: FPGA: Recv ZSGSRD 35185
17-03-18 01:32:53.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:32:53.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:53.280 -07 000000576 INF: FPGA: Recv ZSGSRD 35188
17-03-18 01:32:53.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:53.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:53.290 -07 000000585 INF: FPGA: Recv ZSGSRD 35184
17-03-18 01:32:53.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:53.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:53.300 -07 000000487 INF: FPGA: Recv ZSGSRD 35191
17-03-18 01:32:53.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:53.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:53.310 -07 000000474 INF: FPGA: Recv ZSGSRD 35197
17-03-18 01:32:53.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:53.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:53.320 -07 000000591 INF: FPGA: Recv ZSGSRD 35192
17-03-18 01:32:53.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:53.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:53.330 -07 000000585 INF: FPGA: Recv ZSGSRD 35188
17-03-18 01:32:53.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:53.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:53.340 -07 000000576 INF: FPGA: Recv ZSGSRD 35194
17-03-18 01:32:53.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:53.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:53.350 -07 000000512 INF: FPGA: Recv ZSGSRD 35187
17-03-18 01:32:53.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:53.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:53.360 -07 000000625 INF: FPGA: Recv ZSGSRD 35187
17-03-18 01:32:53.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:53.370 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:53.370 -07 000000585 INF: FPGA: Recv ZPIEZORD 30908
17-03-18 01:32:53.380 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:53.380 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.546 V. Piezo Error = -9.4 V.
17-03-18 01:32:53.380 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35189 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35188 (-165.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35184 (-165.5 uncal um), Max = 35197 (-165.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:32:53.380 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35189, posNoise = 8, negNoise = 5
17-03-18 01:32:53.380 -07 000000610 INF: Z Motor: After move to -0.166381, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:53.380 -07 000000610 INF: Z Motor: Settle wait time = 1414 ms, measure time = 106 ms (allowed 150 ms), total time = 1520 ms
17-03-18 01:32:53.380 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 01:32:53.430 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1573 ms
17-03-18 01:32:53.430 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:32:53.430 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.166384953067561. ----------
17-03-18 01:32:53.430 -07 000000610 INF: Cycle	88	Tile	18	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:32:53.430 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36169, sync = True, waitForSettling = True)
17-03-18 01:32:53.430 -07 000000610 INF: Z Motor: Moving to -0.165571 mm, started at -0.166385 mm, distance = 0.81 um
17-03-18 01:32:53.430 -07 000000610 INF: FPGA: Xmit ZDACW 36169\n [Z Motor]
17-03-18 01:32:53.430 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 01:32:53.440 -07 000000610 INF: FPGA: 'ZDACW 36169' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:32:53.440 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:53.440 -07 000000591 INF: FPGA: Recv ZDACR 36169
17-03-18 01:32:53.450 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:53.450 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:32:53.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:53.600 -07 000000487 INF: FPGA: Recv ZSGSRD 35063
17-03-18 01:32:53.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:53.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:53.610 -07 000000576 INF: FPGA: Recv ZSGSRD 35064
17-03-18 01:32:53.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:53.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:53.620 -07 000000487 INF: FPGA: Recv ZSGSRD 35065
17-03-18 01:32:53.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:53.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:53.630 -07 000000591 INF: FPGA: Recv ZSGSRD 35064
17-03-18 01:32:53.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:53.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:53.640 -07 000000474 INF: FPGA: Recv ZSGSRD 35069
17-03-18 01:32:53.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:53.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:53.650 -07 000000576 INF: FPGA: Recv ZSGSRD 35066
17-03-18 01:32:53.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:53.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:53.660 -07 000000474 INF: FPGA: Recv ZSGSRD 35065
17-03-18 01:32:53.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:53.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:53.670 -07 000000576 INF: FPGA: Recv ZSGSRD 35066
17-03-18 01:32:53.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:53.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:53.680 -07 000000512 INF: FPGA: Recv ZSGSRD 35062
17-03-18 01:32:53.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:53.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:53.690 -07 000000585 INF: FPGA: Recv ZSGSRD 35064
17-03-18 01:32:53.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:53.700 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:53.700 -07 000000512 INF: FPGA: Recv ZPIEZORD 30750
17-03-18 01:32:53.710 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:53.710 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.519 V. Piezo Error = -9.5 V.
17-03-18 01:32:53.710 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.6 um, Read 10 ADC samples: Avg = 35065 (-164.7 uncal um), Error = 0.8 uncal um, Median = 35064 (-164.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35062 (-164.7 uncal um), Max = 35069 (-164.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:32:53.710 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35065, posNoise = 4, negNoise = 3
17-03-18 01:32:53.710 -07 000000610 INF: Z Motor: After move to -0.165571, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:53.710 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 01:32:53.710 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:32:53.710 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:32:53.710 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:32:53.710 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:32:53.710 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:32:53.710 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:32:53.710 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:32:53.710 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:32:53.710 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:32:53.710 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:32:53.710 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:32:53.710 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:32:53.720 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:32:53.720 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:32:53.720 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:32:53.720 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:32:53.730 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:32:53.730 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:32:53.730 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:32:53.730 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:32:53.740 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36346 150\n [Camera]
17-03-18 01:32:53.940 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:32:54.330 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:32:54.330 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:32:54.330 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:54.330 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:54.330 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:32:54.330 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:32:54.330 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:32:54.330 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:54.330 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:54.330 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:32:54.520 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36346 775
17-03-18 01:32:54.670 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:32:54.700 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 01:32:54.700 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 01:32:54.700 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:54.700 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 01:32:54.700 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 01:32:54.700 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:54.710 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:32:54.710 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:32:54.710 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 01:32:54.720 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 01:32:54.860 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:32:54.860 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:32:54.860 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:54.860 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:54.860 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 01:32:54.860 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:32:54.860 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:32:54.860 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:54.860 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:54.860 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 01:32:55.050 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:32:55.050 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:32:55.050 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36346 150' command took 2 ms to send, 1303 ms to get response, and 1312 ms overall
17-03-18 01:32:55.050 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:32:55.050 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.165588350761983. ------
17-03-18 01:32:55.050 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:32:55.050 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17144 mm
17-03-18 01:32:55.050 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:32:55.060 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 37451, sync = True, waitForSettling = False)
17-03-18 01:32:55.060 -07 000000585 INF: Z Motor: Moving to -0.171440 mm, started at -0.165588 mm, distance = -5.85 um
17-03-18 01:32:55.060 -07 000000585 INF: FPGA: Xmit ZDACW 37451\n [Z Motor]
17-03-18 01:32:55.060 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 01:32:55.060 -07 000000474 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 01:32:55.060 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:32:55.060 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-18 01:32:55.060 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 01:32:55.070 -07 000000585 INF: FPGA: 'ZDACW 37451' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:55.070 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:55.070 -07 000000569 INF: FPGA: Recv ZDACR 37451
17-03-18 01:32:55.080 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:55.080 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:55.080 -07 000000585 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-18 01:32:55.080 -07 000000569 INF: FPGA: Recv YRDPOS 151569
17-03-18 01:32:55.090 -07 000000487 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:32:55.090 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:32:55.090 -07 000000474 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:55.090 -07 000000474 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:32:55.090 -07 000000474 INF: Y Motor: Moving 1351 steps-29
17-03-18 01:32:55.100 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:32:55.250 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 01:32:55.250 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 01:32:55.250 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:55.250 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 01:32:55.250 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 01:32:55.250 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:55.250 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:55.250 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:32:55.260 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:32:55.260 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:32:55.290 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:32:55.290 -07 000000487 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 228 ms overall
17-03-18 01:32:55.470 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 01:32:55.470 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 388 ms overall
17-03-18 01:32:55.500 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:55.510 -07 000000467 INF: FPGA: Recv YRDPOS 153255
17-03-18 01:32:55.510 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:32:55.510 -07 000000474 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:55.510 -07 000000474 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-18 01:32:55.510 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.844 mm, average velocity = 2.170 mm/sec
17-03-18 01:32:56.460 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:56.460 -07 000000629 INF: FPGA: Recv YRDPOS 153255
17-03-18 01:32:56.470 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:56.470 -07 000000474 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:56.480 -07 000000474 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:32:56.480 -07 000000474 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:32:56.480 -07 000000474 INF: Y Motor: Moved to 74.8315 after 1425 ms (table move)
17-03-18 01:32:56.490 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171440 mm (DAC = 37451)
17-03-18 01:32:56.490 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:56.490 -07 000000585 INF: FPGA: Recv ZSGSRD 35980
17-03-18 01:32:56.500 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:32:56.500 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:56.500 -07 000000611 INF: FPGA: Recv ZSGSRD 35975
17-03-18 01:32:56.510 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:56.510 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:56.510 -07 000000487 INF: FPGA: Recv ZSGSRD 35971
17-03-18 01:32:56.520 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:56.520 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:56.520 -07 000000625 INF: FPGA: Recv ZSGSRD 35977
17-03-18 01:32:56.530 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:56.530 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:56.530 -07 000000626 INF: FPGA: Recv ZSGSRD 35982
17-03-18 01:32:56.540 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:56.540 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:56.540 -07 000000487 INF: FPGA: Recv ZSGSRD 35974
17-03-18 01:32:56.550 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:56.550 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:56.550 -07 000000626 INF: FPGA: Recv ZSGSRD 35984
17-03-18 01:32:56.560 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:56.560 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:56.560 -07 000000487 INF: FPGA: Recv ZSGSRD 35973
17-03-18 01:32:56.570 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:56.570 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:56.570 -07 000000626 INF: FPGA: Recv ZSGSRD 35978
17-03-18 01:32:56.580 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:56.580 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:56.580 -07 000000625 INF: FPGA: Recv ZSGSRD 35980
17-03-18 01:32:56.590 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:56.590 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:56.590 -07 000000501 INF: FPGA: Recv ZPIEZORD 31930
17-03-18 01:32:56.600 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:56.600 -07 000000512 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.715 V. Piezo Error = -8.9 V.
17-03-18 01:32:56.600 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35977 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35978 (-170.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35971 (-170.5 uncal um), Max = 35984 (-170.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:32:56.600 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35977, posNoise = 7, negNoise = 6
17-03-18 01:32:56.600 -07 000000512 INF: Z Motor: After move to -0.171440, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:56.600 -07 000000512 INF: Z Motor: Settle wait time = 1431 ms, measure time = 108 ms (allowed 150 ms), total time = 1539 ms
17-03-18 01:32:56.600 -07 000000512 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:32:56.650 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-18 01:32:56.650 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:32:56.650 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:32:56.650 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:32:56.650 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:32:56.650 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:32:56.650 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:32:56.650 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:32:56.650 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:32:56.650 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:32:56.660 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:32:56.660 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:32:56.670 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:32:56.670 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:32:56.670 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:32:56.720 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:32:57.020 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:32:57.020 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:32:57.020 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:32:57.020 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-18 01:32:57.060 -07 000000512 INF: FPGA: Recv @CAMSNAP 383
17-03-18 01:32:57.060 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 01:32:57.060 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 385 ms to get response, and 389 ms overall
17-03-18 01:32:57.140 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 01:32:57.140 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:57.140 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:32:57.140 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-18 01:32:57.160 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:32:57.160 -07 000000501 INF: Autofocus start
17-03-18 01:32:57.160 -07 000000501 INF: MeasureProfile start
17-03-18 01:32:57.160 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:32:57.170 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:32:57.170 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:32:57.170 -07 000000501 INF: MeasureProfile done
17-03-18 01:32:57.170 -07 000000501 INF: X=32  Z correction [um]=0.09220707
17-03-18 01:32:57.170 -07 000000501 INF: Autofocus finished
17-03-18 01:32:57.270 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:32:57.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:32:57.370 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:32:57.370 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:32:57.370 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.171447232235269. ----------
17-03-18 01:32:57.370 -07 000000610 INF: Cycle	88	Tile	19	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:32:57.380 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35984, sync = True, waitForSettling = True)
17-03-18 01:32:57.380 -07 000000610 INF: Z Motor: Moving to -0.164724 mm, started at -0.171447 mm, distance = 6.72 um
17-03-18 01:32:57.380 -07 000000610 INF: FPGA: Xmit ZDACW 35984\n [Z Motor]
17-03-18 01:32:57.380 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 01:32:57.390 -07 000000610 INF: FPGA: 'ZDACW 35984' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:57.390 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:57.390 -07 000000487 INF: FPGA: Recv ZDACR 35984
17-03-18 01:32:57.400 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:57.400 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:32:57.450 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.038479,
17-03-18 01:32:57.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:57.550 -07 000000626 INF: FPGA: Recv ZSGSRD 34932
17-03-18 01:32:57.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:57.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:57.560 -07 000000590 INF: FPGA: Recv ZSGSRD 34927
17-03-18 01:32:57.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:57.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:57.570 -07 000000501 INF: FPGA: Recv ZSGSRD 34929
17-03-18 01:32:57.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:57.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:57.580 -07 000000512 INF: FPGA: Recv ZSGSRD 34935
17-03-18 01:32:57.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:57.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:57.590 -07 000000625 INF: FPGA: Recv ZSGSRD 34935
17-03-18 01:32:57.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:57.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:57.600 -07 000000512 INF: FPGA: Recv ZSGSRD 34928
17-03-18 01:32:57.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:57.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:57.610 -07 000000569 INF: FPGA: Recv ZSGSRD 34934
17-03-18 01:32:57.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:32:57.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:57.620 -07 000000512 INF: FPGA: Recv ZSGSRD 34929
17-03-18 01:32:57.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:57.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:57.630 -07 000000626 INF: FPGA: Recv ZSGSRD 34931
17-03-18 01:32:57.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:57.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:32:57.640 -07 000000487 INF: FPGA: Recv ZSGSRD 34930
17-03-18 01:32:57.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:57.650 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:32:57.650 -07 000000590 INF: FPGA: Recv ZPIEZORD 30545
17-03-18 01:32:57.660 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:57.660 -07 000000610 INF: Z Motor: Piezo is near 45.3 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.491 V. Piezo Error = -9.7 V.
17-03-18 01:32:57.660 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.7 um, Read 10 ADC samples: Avg = 34931 (-163.9 uncal um), Error = 0.9 uncal um, Median = 34930 (-163.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 34927 (-163.8 uncal um), Max = 34935 (-163.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:32:57.660 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34931, posNoise = 4, negNoise = 4
17-03-18 01:32:57.660 -07 000000610 INF: Z Motor: After move to -0.164724, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:32:57.660 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:32:57.660 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:32:57.660 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:32:57.660 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:32:57.660 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:32:57.660 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:32:57.660 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:32:57.660 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:32:57.660 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:32:57.660 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:32:57.660 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:32:57.660 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:32:57.660 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:32:57.670 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:32:57.670 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:32:57.670 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:32:57.670 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:32:57.680 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:32:57.680 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:32:57.680 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:32:57.680 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:32:57.680 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36160 150\n [Camera]
17-03-18 01:32:57.880 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:32:58.270 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:32:58.270 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:32:58.270 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:58.270 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:58.270 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 01:32:58.270 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:32:58.280 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:32:58.280 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:58.280 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:58.280 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 01:32:58.460 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36160 775
17-03-18 01:32:58.610 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:32:58.650 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 01:32:58.650 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 01:32:58.650 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:58.650 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 01:32:58.650 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 01:32:58.650 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:58.650 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:32:58.660 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:32:58.660 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 01:32:58.660 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 01:32:58.800 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:32:58.800 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:32:58.800 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:32:58.800 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:32:58.800 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 01:32:58.800 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:32:58.800 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:32:58.800 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:32:58.800 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:32:58.800 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 01:32:58.990 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:32:58.990 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:32:58.990 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36160 150' command took 2 ms to send, 1307 ms to get response, and 1312 ms overall
17-03-18 01:32:59.210 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 01:32:59.210 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 01:32:59.210 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:59.210 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 01:32:59.210 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 01:32:59.210 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:32:59.210 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:32:59.220 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:32:59.220 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 01:32:59.220 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 01:32:59.220 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 01:32:59.260 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 44 ms.
17-03-18 01:32:59.260 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 01:32:59.300 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 01:32:59.300 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 01:32:59.310 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 01:32:59.310 -07 000000625 INF: FPGA: Recv EMCUR 
17-03-18 01:32:59.320 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:32:59.320 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 01:32:59.820 -07 000000625 INF: FPGA: Recv EMIN
17-03-18 01:32:59.820 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 01:32:59.820 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 01:32:59.820 -07 000000501 INF: FPGA: Recv EMCUR 
17-03-18 01:32:59.830 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:32:59.830 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:32:59.830 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.164727506334987. ------
17-03-18 01:32:59.830 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:32:59.830 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13931 mm
17-03-18 01:32:59.830 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:32:59.830 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:32:59.830 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 01:32:59.830 -07 000000512 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-18 01:32:59.830 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30431, sync = True, waitForSettling = False)
17-03-18 01:32:59.830 -07 000000501 INF: Z Motor: Moving to -0.139304 mm, started at -0.164728 mm, distance = 25.42 um
17-03-18 01:32:59.840 -07 000000501 INF: FPGA: Xmit ZDACW 30431\n [Z Motor]
17-03-18 01:32:59.840 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:32:59.840 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 01:32:59.850 -07 000000501 INF: FPGA: 'ZDACW 30431' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:32:59.850 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:32:59.850 -07 000000561 INF: FPGA: Recv YRDPOS 153256
17-03-18 01:32:59.860 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:32:59.860 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 01:32:59.860 -07 000000512 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:32:59.860 -07 000000512 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 01:32:59.860 -07 000000512 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 01:32:59.870 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:32:59.870 -07 000000626 INF: FPGA: Recv ZDACR 30431
17-03-18 01:32:59.880 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 01:32:59.880 -07 000000501 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 01:32:59.880 -07 000000512 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 01:33:00.060 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:33:00.060 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 224 ms overall
17-03-18 01:33:01.500 -07 000000585 INF: FPGA: Recv YMVTO 122703 23904
17-03-18 01:33:01.500 -07 000000512 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1619 ms to get response, and 1644 ms overall
17-03-18 01:33:01.500 -07 000000512 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 01:33:01.500 -07 000000512 INF: Y Motor: To move from 74.832 to 59.913 (-14.919 mm) should take 23871 steps, but required 23904 steps (14.940 mm). Slippage = 0.021 mm (0.00%).
17-03-18 01:33:01.500 -07 000000512 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1644 ms, distance = 14.919 mm, average velocity = 9.075 mm/sec
17-03-18 01:33:02.270 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:33:02.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:33:02.810 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.009895,
17-03-18 01:33:04.350 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:04.350 -07 000000591 INF: FPGA: Recv YRDPOS 122698
17-03-18 01:33:04.360 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:04.360 -07 000000512 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:04.390 -07 000000512 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:33:04.390 -07 000000512 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-18 01:33:04.390 -07 000000512 INF: Y Motor: Moved to 59.9111 after 4557 ms
17-03-18 01:33:04.400 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139304 mm (DAC = 30431)
17-03-18 01:33:04.400 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:04.400 -07 000000611 INF: FPGA: Recv ZSGSRD 30983
17-03-18 01:33:04.410 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:04.410 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:04.410 -07 000000479 INF: FPGA: Recv ZSGSRD 30974
17-03-18 01:33:04.420 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:04.420 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:04.420 -07 000000569 INF: FPGA: Recv ZSGSRD 30970
17-03-18 01:33:04.430 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:04.430 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:04.430 -07 000000590 INF: FPGA: Recv ZSGSRD 30975
17-03-18 01:33:04.440 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:04.440 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:04.440 -07 000000501 INF: FPGA: Recv ZSGSRD 30971
17-03-18 01:33:04.450 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:04.450 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:04.450 -07 000000467 INF: FPGA: Recv ZSGSRD 30974
17-03-18 01:33:04.460 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:04.460 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:04.460 -07 000000585 INF: FPGA: Recv ZSGSRD 30973
17-03-18 01:33:04.470 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:04.470 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:04.470 -07 000000502 INF: FPGA: Recv ZSGSRD 30974
17-03-18 01:33:04.480 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:04.480 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:04.480 -07 000000467 INF: FPGA: Recv ZSGSRD 30978
17-03-18 01:33:04.490 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:04.490 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:04.490 -07 000000611 INF: FPGA: Recv ZSGSRD 30975
17-03-18 01:33:04.500 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:04.500 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:04.500 -07 000000591 INF: FPGA: Recv ZPIEZORD 26392
17-03-18 01:33:04.510 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:04.510 -07 000000487 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.643 V. Piezo Error = -10.1 V.
17-03-18 01:33:04.510 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30975 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30974 (-138.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30970 (-138.5 uncal um), Max = 30983 (-138.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:33:04.510 -07 000000487 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30975, posNoise = 8, negNoise = 5
17-03-18 01:33:04.510 -07 000000487 INF: Z Motor: After move to -0.139304, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:04.510 -07 000000487 INF: Z Motor: Settle wait time = 4560 ms, measure time = 111 ms (allowed 150 ms), total time = 4671 ms
17-03-18 01:33:04.510 -07 000000487 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:33:04.550 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4715 ms
17-03-18 01:33:04.550 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:33:04.550 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:33:04.550 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:33:04.550 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:33:04.550 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:33:04.550 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:33:04.550 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:33:04.550 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:33:04.550 -07 000000467 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 01:33:04.570 -07 000000467 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-18 01:33:04.570 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:33:04.580 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:33:04.580 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:33:04.580 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:33:04.580 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 31 ms.
17-03-18 01:33:04.590 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:33:04.630 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:33:04.930 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:33:04.930 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:33:04.930 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:33:04.930 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615280568, 0x0, 559484976) start.
17-03-18 01:33:04.970 -07 000000576 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:33:04.970 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 01:33:04.970 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 01:33:05.050 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615280568, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 01:33:05.050 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:05.050 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:33:05.050 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 01:33:05.070 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:33:05.070 -07 000000487 INF: Image SNR check: start
17-03-18 01:33:05.070 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:33:05.080 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:33:05.080 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:33:05.080 -07 000000487 INF: Image SNR check: pass  [peak (Max-Min)=117.60]
17-03-18 01:33:05.080 -07 000000487 INF: Autofocus start
17-03-18 01:33:05.080 -07 000000487 INF: MeasureProfile start
17-03-18 01:33:05.100 -07 000000487 INF: MeasureProfile done
17-03-18 01:33:05.100 -07 000000487 INF: X=80  Z correction [um]=0.3608828
17-03-18 01:33:05.100 -07 000000487 INF: Autofocus finished
17-03-18 01:33:05.280 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:33:05.280 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:33:05.280 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.139313323102181. ----------
17-03-18 01:33:05.280 -07 000000610 INF: Cycle	88	Tile	1	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:33:05.290 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29023, sync = True, waitForSettling = True)
17-03-18 01:33:05.290 -07 000000610 INF: Z Motor: Moving to -0.132859 mm, started at -0.139313 mm, distance = 6.45 um
17-03-18 01:33:05.300 -07 000000610 INF: FPGA: Xmit ZDACW 29023\n [Z Motor]
17-03-18 01:33:05.300 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 01:33:05.310 -07 000000610 INF: FPGA: 'ZDACW 29023' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:33:05.310 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:05.310 -07 000000487 INF: FPGA: Recv ZDACR 29023
17-03-18 01:33:05.320 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:05.320 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:33:05.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:05.470 -07 000000487 INF: FPGA: Recv ZSGSRD 29972
17-03-18 01:33:05.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:05.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:05.480 -07 000000576 INF: FPGA: Recv ZSGSRD 29970
17-03-18 01:33:05.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:05.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:05.490 -07 000000576 INF: FPGA: Recv ZSGSRD 29965
17-03-18 01:33:05.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:05.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:05.500 -07 000000512 INF: FPGA: Recv ZSGSRD 29973
17-03-18 01:33:05.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:05.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:05.510 -07 000000576 INF: FPGA: Recv ZSGSRD 29970
17-03-18 01:33:05.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:05.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:05.520 -07 000000487 INF: FPGA: Recv ZSGSRD 29967
17-03-18 01:33:05.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:05.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:05.530 -07 000000512 INF: FPGA: Recv ZSGSRD 29975
17-03-18 01:33:05.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:05.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:05.540 -07 000000487 INF: FPGA: Recv ZSGSRD 29976
17-03-18 01:33:05.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:05.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:05.550 -07 000000501 INF: FPGA: Recv ZSGSRD 29971
17-03-18 01:33:05.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:05.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:05.560 -07 000000576 INF: FPGA: Recv ZSGSRD 29961
17-03-18 01:33:05.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:05.570 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:05.570 -07 000000576 INF: FPGA: Recv ZPIEZORD 25357
17-03-18 01:33:05.580 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:05.580 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.429 V. Piezo Error = -10.1 V.
17-03-18 01:33:05.580 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.9 um, Read 10 ADC samples: Avg = 29970 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29970 (-132.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29961 (-132.0 uncal um), Max = 29976 (-132.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:33:05.580 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29970, posNoise = 6, negNoise = 9
17-03-18 01:33:05.580 -07 000000610 INF: Z Motor: After move to -0.132859, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:05.580 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms)
17-03-18 01:33:05.580 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:33:05.580 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:33:05.580 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:33:05.580 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:33:05.580 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:33:05.580 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:33:05.580 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:33:05.580 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:33:05.580 -07 000000487 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 01:33:05.580 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:33:05.580 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:33:05.580 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:33:05.590 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:33:05.590 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:33:05.600 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:33:05.600 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 01:33:05.600 -07 000000487 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 01:33:05.600 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:33:05.610 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:33:05.610 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:33:05.610 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:33:05.610 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-18 01:33:05.620 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 29200 150\n [Camera]
17-03-18 01:33:05.820 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:33:06.210 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:33:06.210 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:33:06.210 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:33:06.210 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:33:06.210 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 01:33:06.210 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:33:06.210 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:33:06.210 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:33:06.210 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:33:06.210 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 01:33:06.400 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29200 775
17-03-18 01:33:06.550 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:33:06.600 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:33:06.600 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:33:06.600 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:06.610 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:33:06.610 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:33:06.610 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:33:06.610 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:33:06.610 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:06.610 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:33:06.620 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 01:33:06.740 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:33:06.740 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:33:06.740 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:33:06.740 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:33:06.740 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 01:33:06.740 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:33:06.740 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:33:06.740 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:33:06.740 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:33:06.740 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 01:33:06.930 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:33:06.930 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:33:06.930 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 29200 150' command took 2 ms to send, 1304 ms to get response, and 1312 ms overall
17-03-18 01:33:06.930 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.133121
17-03-18 01:33:06.930 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13312 mm
17-03-18 01:33:06.930 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:33:06.940 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 01:33:06.940 -07 000000629 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-18 01:33:06.940 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:06.940 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 29080, sync = True, waitForSettling = False)
17-03-18 01:33:06.940 -07 000000479 INF: Z Motor: Moving to -0.133120 mm, started at -0.132857 mm, distance = -0.26 um
17-03-18 01:33:06.940 -07 000000501 INF: FPGA: Recv YRDPOS 122698
17-03-18 01:33:06.950 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:06.950 -07 000000629 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:06.950 -07 000000629 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:33:06.950 -07 000000629 INF: Y Motor: Moving 1330 steps2
17-03-18 01:33:06.950 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:33:06.960 -07 000000479 INF: FPGA: Xmit ZDACW 29080\n [Z Motor]
17-03-18 01:33:06.960 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:33:06.970 -07 000000479 INF: FPGA: 'ZDACW 29080' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:33:06.970 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:06.970 -07 000000424 INF: FPGA: Recv ZDACR 29080
17-03-18 01:33:06.980 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:06.980 -07 000000479 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 01:33:07.140 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 01:33:07.140 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:33:07.140 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:07.140 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 01:33:07.140 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:33:07.140 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:07.150 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:33:07.150 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:33:07.150 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 01:33:07.150 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 01:33:07.270 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:33:07.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:33:07.320 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 01:33:07.320 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 01:33:07.360 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:07.360 -07 000000474 INF: FPGA: Recv YRDPOS 124381
17-03-18 01:33:07.370 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:33:07.370 -07 000000629 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:07.370 -07 000000629 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 01:33:07.370 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.831 mm, average velocity = 2.200 mm/sec
17-03-18 01:33:08.170 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 3.979922,
17-03-18 01:33:08.320 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:08.320 -07 000000501 INF: FPGA: Recv YRDPOS 124381
17-03-18 01:33:08.330 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:08.330 -07 000000629 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:08.350 -07 000000629 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:33:08.350 -07 000000629 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:33:08.350 -07 000000629 INF: Y Motor: Moved to 60.7329 after 1418 ms (table move)
17-03-18 01:33:08.360 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133120 mm (DAC = 29080)
17-03-18 01:33:08.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:08.360 -07 000000629 INF: FPGA: Recv ZSGSRD 30008
17-03-18 01:33:08.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:33:08.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:08.370 -07 000000629 INF: FPGA: Recv ZSGSRD 30011
17-03-18 01:33:08.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:08.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:08.380 -07 000000629 INF: FPGA: Recv ZSGSRD 30011
17-03-18 01:33:08.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:08.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:08.390 -07 000000629 INF: FPGA: Recv ZSGSRD 30015
17-03-18 01:33:08.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:08.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:08.400 -07 000000629 INF: FPGA: Recv ZSGSRD 30011
17-03-18 01:33:08.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:08.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:08.410 -07 000000487 INF: FPGA: Recv ZSGSRD 30013
17-03-18 01:33:08.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:08.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:08.420 -07 000000487 INF: FPGA: Recv ZSGSRD 30008
17-03-18 01:33:08.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:08.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:08.430 -07 000000487 INF: FPGA: Recv ZSGSRD 30010
17-03-18 01:33:08.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:08.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:08.440 -07 000000487 INF: FPGA: Recv ZSGSRD 30013
17-03-18 01:33:08.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:08.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:08.450 -07 000000487 INF: FPGA: Recv ZSGSRD 30016
17-03-18 01:33:08.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:08.460 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:08.460 -07 000000424 INF: FPGA: Recv ZPIEZORD 25477
17-03-18 01:33:08.470 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:08.470 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.437 V. Piezo Error = -9.9 V.
17-03-18 01:33:08.470 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30012 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30011 (-132.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30008 (-132.3 uncal um), Max = 30016 (-132.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:33:08.470 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30012, posNoise = 4, negNoise = 4
17-03-18 01:33:08.470 -07 000000610 INF: Z Motor: After move to -0.133120, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:08.470 -07 000000610 INF: Z Motor: Settle wait time = 1420 ms, measure time = 109 ms (allowed 150 ms), total time = 1529 ms
17-03-18 01:33:08.470 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:33:08.520 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1581 ms
17-03-18 01:33:08.520 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:33:08.520 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.133126806809665. ----------
17-03-18 01:33:08.520 -07 000000610 INF: Cycle	88	Tile	2	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:33:08.520 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28904, sync = True, waitForSettling = True)
17-03-18 01:33:08.520 -07 000000610 INF: Z Motor: Moving to -0.132314 mm, started at -0.133127 mm, distance = 0.81 um
17-03-18 01:33:08.520 -07 000000610 INF: FPGA: Xmit ZDACW 28904\n [Z Motor]
17-03-18 01:33:08.520 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 01:33:08.530 -07 000000610 INF: FPGA: 'ZDACW 28904' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:33:08.530 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:08.530 -07 000000501 INF: FPGA: Recv ZDACR 28904
17-03-18 01:33:08.540 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:08.540 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:33:08.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:08.690 -07 000000569 INF: FPGA: Recv ZSGSRD 29892
17-03-18 01:33:08.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:08.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:08.700 -07 000000501 INF: FPGA: Recv ZSGSRD 29897
17-03-18 01:33:08.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:08.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:08.710 -07 000000501 INF: FPGA: Recv ZSGSRD 29883
17-03-18 01:33:08.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:08.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:08.720 -07 000000569 INF: FPGA: Recv ZSGSRD 29890
17-03-18 01:33:08.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:08.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:08.730 -07 000000569 INF: FPGA: Recv ZSGSRD 29891
17-03-18 01:33:08.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:08.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:08.740 -07 000000569 INF: FPGA: Recv ZSGSRD 29882
17-03-18 01:33:08.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:08.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:08.750 -07 000000569 INF: FPGA: Recv ZSGSRD 29888
17-03-18 01:33:08.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:08.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:08.760 -07 000000569 INF: FPGA: Recv ZSGSRD 29889
17-03-18 01:33:08.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:08.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:08.770 -07 000000569 INF: FPGA: Recv ZSGSRD 29888
17-03-18 01:33:08.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:08.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:08.780 -07 000000569 INF: FPGA: Recv ZSGSRD 29890
17-03-18 01:33:08.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:08.790 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:08.790 -07 000000569 INF: FPGA: Recv ZPIEZORD 25309
17-03-18 01:33:08.800 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:08.800 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.410 V. Piezo Error = -10.0 V.
17-03-18 01:33:08.800 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29889 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29890 (-131.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29882 (-131.5 uncal um), Max = 29897 (-131.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:33:08.800 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29889, posNoise = 8, negNoise = 7
17-03-18 01:33:08.800 -07 000000610 INF: Z Motor: After move to -0.132314, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:08.800 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 01:33:08.800 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:33:08.800 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:33:08.800 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:33:08.800 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:33:08.800 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:33:08.800 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:33:08.800 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:33:08.800 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:33:08.810 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:33:08.810 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:33:08.820 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:33:08.820 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:33:08.830 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:33:08.830 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:33:08.830 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:33:08.830 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:33:08.830 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:33:08.830 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:33:08.840 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 01:33:08.840 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:33:08.840 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 29080 150\n [Camera]
17-03-18 01:33:09.040 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:33:09.430 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:33:09.430 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:33:09.430 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:33:09.430 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:33:09.430 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 01:33:09.830 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:33:09.830 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:33:09.830 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:09.840 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:33:09.840 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:33:09.850 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:33:09.850 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29080 775
17-03-18 01:33:09.850 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:33:09.850 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:33:09.850 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:33:09.850 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:33:09.850 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-18 01:33:10.250 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:33:10.250 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:33:10.250 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:10.250 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:33:10.260 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:33:10.270 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:33:10.270 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:33:10.270 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:33:10.270 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:33:10.270 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 29080 150' command took 2 ms to send, 1415 ms to get response, and 1427 ms overall
17-03-18 01:33:10.270 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:33:10.270 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:33:10.270 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:33:10.400 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:33:10.400 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.132336628716228. ------
17-03-18 01:33:10.410 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:33:10.410 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:33:10.810 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 01:33:10.810 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:33:10.810 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:10.810 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:33:10.810 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 540 ms.
17-03-18 01:33:10.820 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:33:10.820 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:33:10.830 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:33:10.830 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:33:10.830 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:33:10.830 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13902 mm
17-03-18 01:33:10.830 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:33:10.830 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 01:33:10.830 -07 000000502 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-18 01:33:10.830 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 30369, sync = True, waitForSettling = False)
17-03-18 01:33:10.830 -07 000000591 INF: Z Motor: Moving to -0.139020 mm, started at -0.132337 mm, distance = -6.68 um
17-03-18 01:33:10.840 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:10.840 -07 000000591 INF: FPGA: Xmit ZDACW 30369\n [Z Motor]
17-03-18 01:33:10.840 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:33:10.850 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:10.850 -07 000000591 INF: FPGA: 'ZDACW 30369' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:33:10.850 -07 000000611 INF: FPGA: Recv YRDPOS 124382
17-03-18 01:33:10.860 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:33:10.860 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:33:10.860 -07 000000502 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:10.860 -07 000000502 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:33:10.860 -07 000000502 INF: Y Motor: Moving 1343 steps-20
17-03-18 01:33:10.870 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:10.870 -07 000000561 INF: FPGA: Recv ZDACR 30369
17-03-18 01:33:10.880 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:33:10.880 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:33:10.880 -07 000000591 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 01:33:11.060 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:33:11.060 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:33:11.220 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:33:11.220 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:33:11.220 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:11.230 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:33:11.230 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:33:11.250 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 01:33:11.260 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 394 ms overall
17-03-18 01:33:11.300 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:11.300 -07 000000585 INF: FPGA: Recv YRDPOS 126082
17-03-18 01:33:11.310 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:33:11.310 -07 000000502 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:11.310 -07 000000502 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 01:33:11.310 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.131 mm/sec
17-03-18 01:33:12.260 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:12.260 -07 000000611 INF: FPGA: Recv YRDPOS 126083
17-03-18 01:33:12.270 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:12.270 -07 000000502 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:12.270 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:33:12.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:33:12.290 -07 000000502 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:33:12.290 -07 000000502 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:33:12.290 -07 000000502 INF: Y Motor: Moved to 61.5640 after 1461 ms (table move)
17-03-18 01:33:12.300 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139020 mm (DAC = 30369)
17-03-18 01:33:12.300 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:12.300 -07 000000591 INF: FPGA: Recv ZSGSRD 30932
17-03-18 01:33:12.310 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:12.310 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:12.310 -07 000000502 INF: FPGA: Recv ZSGSRD 30932
17-03-18 01:33:12.320 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:12.320 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:12.320 -07 000000626 INF: FPGA: Recv ZSGSRD 30934
17-03-18 01:33:12.330 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:12.330 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:12.330 -07 000000591 INF: FPGA: Recv ZSGSRD 30932
17-03-18 01:33:12.340 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:12.340 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:12.340 -07 000000569 INF: FPGA: Recv ZSGSRD 30927
17-03-18 01:33:12.350 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:12.350 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:12.350 -07 000000502 INF: FPGA: Recv ZSGSRD 30926
17-03-18 01:33:12.360 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:12.360 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:12.360 -07 000000611 INF: FPGA: Recv ZSGSRD 30928
17-03-18 01:33:12.370 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:12.370 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:12.370 -07 000000502 INF: FPGA: Recv ZSGSRD 30928
17-03-18 01:33:12.380 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:12.380 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:12.380 -07 000000569 INF: FPGA: Recv ZSGSRD 30924
17-03-18 01:33:12.390 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:12.390 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:12.390 -07 000000502 INF: FPGA: Recv ZSGSRD 30931
17-03-18 01:33:12.400 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:12.400 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:12.400 -07 000000611 INF: FPGA: Recv ZPIEZORD 26730
17-03-18 01:33:12.410 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:12.410 -07 000000467 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.634 V. Piezo Error = -9.2 V.
17-03-18 01:33:12.410 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30929 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30930 (-138.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30924 (-138.2 uncal um), Max = 30934 (-138.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:33:12.410 -07 000000467 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30929, posNoise = 5, negNoise = 5
17-03-18 01:33:12.410 -07 000000467 INF: Z Motor: After move to -0.139020, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:12.410 -07 000000467 INF: Z Motor: Settle wait time = 1464 ms, measure time = 109 ms (allowed 150 ms), total time = 1573 ms
17-03-18 01:33:12.410 -07 000000467 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:33:12.460 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 01:33:12.460 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:33:12.460 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:33:12.460 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:33:12.460 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:33:12.460 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:33:12.460 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:33:12.460 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:33:12.470 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:33:12.470 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:33:12.470 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:33:12.470 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:33:12.480 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 01:33:12.480 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 01:33:12.480 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:33:13.210 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:33:13.210 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:33:13.210 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:33:13.210 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 01:33:13.210 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:33:13.210 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 725 ms to get response, and 728 ms overall
17-03-18 01:33:13.210 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:33:13.210 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-18 01:33:13.330 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:33:13.330 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:13.330 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:33:13.330 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:33:13.410 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:33:13.410 -07 000000625 INF: Autofocus start
17-03-18 01:33:13.410 -07 000000625 INF: MeasureProfile start
17-03-18 01:33:13.410 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:33:13.420 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:33:13.420 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:33:13.420 -07 000000625 INF: MeasureProfile done
17-03-18 01:33:13.420 -07 000000625 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 01:33:13.420 -07 000000625 INF: Autofocus finished
17-03-18 01:33:13.530 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.005817,
17-03-18 01:33:13.620 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:33:13.620 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:33:13.620 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.13901780934366. ----------
17-03-18 01:33:13.620 -07 000000610 INF: Cycle	88	Tile	3	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:33:13.630 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28864, sync = True, waitForSettling = True)
17-03-18 01:33:13.630 -07 000000610 INF: Z Motor: Moving to -0.132131 mm, started at -0.139018 mm, distance = 6.89 um
17-03-18 01:33:13.630 -07 000000610 INF: FPGA: Xmit ZDACW 28864\n [Z Motor]
17-03-18 01:33:13.630 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:33:13.640 -07 000000610 INF: FPGA: 'ZDACW 28864' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:13.640 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:13.640 -07 000000590 INF: FPGA: Recv ZDACR 28864
17-03-18 01:33:13.650 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:13.650 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:33:13.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:13.800 -07 000000625 INF: FPGA: Recv ZSGSRD 29864
17-03-18 01:33:13.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:13.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:13.810 -07 000000467 INF: FPGA: Recv ZSGSRD 29855
17-03-18 01:33:13.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:13.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:13.820 -07 000000626 INF: FPGA: Recv ZSGSRD 29861
17-03-18 01:33:13.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:13.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:13.830 -07 000000625 INF: FPGA: Recv ZSGSRD 29857
17-03-18 01:33:13.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:13.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:13.840 -07 000000591 INF: FPGA: Recv ZSGSRD 29854
17-03-18 01:33:13.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:13.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:13.850 -07 000000590 INF: FPGA: Recv ZSGSRD 29860
17-03-18 01:33:13.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:13.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:13.860 -07 000000591 INF: FPGA: Recv ZSGSRD 29858
17-03-18 01:33:13.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:13.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:13.870 -07 000000467 INF: FPGA: Recv ZSGSRD 29859
17-03-18 01:33:13.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:13.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:13.880 -07 000000585 INF: FPGA: Recv ZSGSRD 29854
17-03-18 01:33:13.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:13.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:13.890 -07 000000590 INF: FPGA: Recv ZSGSRD 29860
17-03-18 01:33:13.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:13.900 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:13.900 -07 000000611 INF: FPGA: Recv ZPIEZORD 25310
17-03-18 01:33:13.910 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:13.910 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.404 V. Piezo Error = -10.0 V.
17-03-18 01:33:13.910 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29858 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29858 (-131.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29854 (-131.3 uncal um), Max = 29864 (-131.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:33:13.910 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29858, posNoise = 6, negNoise = 4
17-03-18 01:33:13.910 -07 000000610 INF: Z Motor: After move to -0.132131, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:13.910 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:33:13.910 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:33:13.910 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:33:13.910 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:33:13.910 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:33:13.910 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:33:13.910 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:33:13.910 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:33:13.910 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:33:13.910 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:33:13.910 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:33:13.910 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:33:13.910 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:33:13.910 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:33:13.910 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:33:13.920 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:33:13.920 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:33:13.930 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 01:33:13.930 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:33:13.930 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:33:13.930 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:33:13.930 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 29040 150\n [Camera]
17-03-18 01:33:14.130 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:33:14.520 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:33:14.520 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:33:14.520 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:33:14.520 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:33:14.520 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:33:14.520 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:33:14.530 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:33:14.530 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1443674384, 0x0, 391868352) start.
17-03-18 01:33:14.530 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:33:14.530 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:33:14.710 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29040 775
17-03-18 01:33:14.860 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:33:14.920 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1443674384, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:33:14.920 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:33:14.920 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:14.920 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 01:33:14.920 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:33:14.920 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:14.930 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:33:14.930 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:33:14.930 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:33:14.930 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:33:15.050 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:33:15.050 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:33:15.050 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:33:15.160 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:33:15.160 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:33:15.170 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:33:15.170 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:33:15.170 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:33:15.170 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:33:15.170 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:33:15.240 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:33:15.240 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:33:15.240 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 29040 150' command took 2 ms to send, 1307 ms to get response, and 1312 ms overall
17-03-18 01:33:15.240 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.132498
17-03-18 01:33:15.240 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13250 mm
17-03-18 01:33:15.240 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:33:15.250 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 28944, sync = True, waitForSettling = False)
17-03-18 01:33:15.250 -07 000000467 INF: Z Motor: Moving to -0.132497 mm, started at -0.132137 mm, distance = -0.36 um
17-03-18 01:33:15.250 -07 000000467 INF: FPGA: Xmit ZDACW 28944\n [Z Motor]
17-03-18 01:33:15.250 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 01:33:15.250 -07 000000611 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-18 01:33:15.250 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:33:15.260 -07 000000467 INF: FPGA: 'ZDACW 28944' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:33:15.260 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:15.260 -07 000000625 INF: FPGA: Recv ZDACR 28944
17-03-18 01:33:15.270 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:15.270 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:15.270 -07 000000467 INF: Z Motor: MoveAbsStepped took 17 ms (did NOT wait for settling yet))
17-03-18 01:33:15.270 -07 000000569 INF: FPGA: Recv YRDPOS 126083
17-03-18 01:33:15.280 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:33:15.280 -07 000000611 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:15.280 -07 000000611 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:33:15.280 -07 000000611 INF: Y Motor: Moving 1342 steps-19
17-03-18 01:33:15.280 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:33:15.580 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 01:33:15.580 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:33:15.580 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:15.580 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 01:33:15.580 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 01:33:15.580 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:15.580 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:33:15.580 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 529 ms.
17-03-18 01:33:15.580 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:33:15.590 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-18 01:33:15.660 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 01:33:15.660 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 379 ms overall
17-03-18 01:33:15.700 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:15.700 -07 000000591 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:33:15.710 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:33:15.710 -07 000000611 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:15.710 -07 000000611 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 01:33:15.710 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.839 mm, average velocity = 2.213 mm/sec
17-03-18 01:33:16.660 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:16.660 -07 000000467 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:33:16.670 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:16.670 -07 000000611 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:16.690 -07 000000611 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:33:16.690 -07 000000611 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:33:16.690 -07 000000611 INF: Y Motor: Moved to 62.3955 after 1443 ms (table move)
17-03-18 01:33:16.690 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132497 mm (DAC = 28944)
17-03-18 01:33:16.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:16.700 -07 000000576 INF: FPGA: Recv ZSGSRD 29910
17-03-18 01:33:16.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 01:33:16.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:16.700 -07 000000569 INF: FPGA: Recv ZSGSRD 29916
17-03-18 01:33:16.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:33:16.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:16.710 -07 000000591 INF: FPGA: Recv ZSGSRD 29910
17-03-18 01:33:16.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:16.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:16.720 -07 000000625 INF: FPGA: Recv ZSGSRD 29910
17-03-18 01:33:16.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:16.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:16.730 -07 000000590 INF: FPGA: Recv ZSGSRD 29913
17-03-18 01:33:16.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:16.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:16.740 -07 000000576 INF: FPGA: Recv ZSGSRD 29911
17-03-18 01:33:16.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:16.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:16.750 -07 000000591 INF: FPGA: Recv ZSGSRD 29916
17-03-18 01:33:16.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:16.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:16.760 -07 000000569 INF: FPGA: Recv ZSGSRD 29919
17-03-18 01:33:16.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:16.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:16.770 -07 000000591 INF: FPGA: Recv ZSGSRD 29918
17-03-18 01:33:16.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:16.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:16.780 -07 000000569 INF: FPGA: Recv ZSGSRD 29909
17-03-18 01:33:16.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:16.790 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:16.790 -07 000000590 INF: FPGA: Recv ZPIEZORD 25419
17-03-18 01:33:16.800 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:16.800 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.417 V. Piezo Error = -9.9 V.
17-03-18 01:33:16.800 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29913 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29912 (-131.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29909 (-131.7 uncal um), Max = 29919 (-131.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:33:16.800 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29913, posNoise = 6, negNoise = 4
17-03-18 01:33:16.800 -07 000000610 INF: Z Motor: After move to -0.132497, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:16.800 -07 000000610 INF: Z Motor: Settle wait time = 1446 ms, measure time = 102 ms (allowed 150 ms), total time = 1548 ms
17-03-18 01:33:16.800 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 01:33:16.850 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-18 01:33:16.850 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:33:16.850 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.132490809807631. ----------
17-03-18 01:33:16.850 -07 000000610 INF: Cycle	88	Tile	4	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:33:16.850 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28767, sync = True, waitForSettling = True)
17-03-18 01:33:16.850 -07 000000610 INF: Z Motor: Moving to -0.131687 mm, started at -0.132491 mm, distance = 0.80 um
17-03-18 01:33:16.850 -07 000000610 INF: FPGA: Xmit ZDACW 28767\n [Z Motor]
17-03-18 01:33:16.850 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 01:33:16.860 -07 000000610 INF: FPGA: 'ZDACW 28767' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:33:16.860 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:16.860 -07 000000611 INF: FPGA: Recv ZDACR 28767
17-03-18 01:33:16.870 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:16.870 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:33:17.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:17.020 -07 000000590 INF: FPGA: Recv ZSGSRD 29792
17-03-18 01:33:17.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:17.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:17.030 -07 000000467 INF: FPGA: Recv ZSGSRD 29781
17-03-18 01:33:17.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:17.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:17.040 -07 000000569 INF: FPGA: Recv ZSGSRD 29787
17-03-18 01:33:17.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:17.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:17.050 -07 000000467 INF: FPGA: Recv ZSGSRD 29787
17-03-18 01:33:17.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:17.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:17.060 -07 000000569 INF: FPGA: Recv ZSGSRD 29793
17-03-18 01:33:17.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:17.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:17.070 -07 000000467 INF: FPGA: Recv ZSGSRD 29783
17-03-18 01:33:17.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:17.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:17.080 -07 000000569 INF: FPGA: Recv ZSGSRD 29780
17-03-18 01:33:17.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:17.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:17.090 -07 000000611 INF: FPGA: Recv ZSGSRD 29798
17-03-18 01:33:17.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:17.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:17.100 -07 000000569 INF: FPGA: Recv ZSGSRD 29783
17-03-18 01:33:17.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:17.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:17.110 -07 000000590 INF: FPGA: Recv ZSGSRD 29788
17-03-18 01:33:17.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:17.120 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:17.120 -07 000000625 INF: FPGA: Recv ZPIEZORD 25254
17-03-18 01:33:17.130 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:17.130 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.390 V. Piezo Error = -9.9 V.
17-03-18 01:33:17.130 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29787 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29787 (-130.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29780 (-130.9 uncal um), Max = 29798 (-131.0 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:33:17.130 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29787, posNoise = 11, negNoise = 7
17-03-18 01:33:17.130 -07 000000610 INF: Z Motor: After move to -0.131687, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:17.130 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 01:33:17.130 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:33:17.130 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:33:17.130 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:33:17.130 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:33:17.130 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:33:17.130 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:33:17.130 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:33:17.130 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:33:17.130 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:33:17.130 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:33:17.130 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:33:17.130 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:33:17.140 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:33:17.140 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:33:17.140 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:33:17.140 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:33:17.140 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:33:17.140 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 01:33:17.150 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:33:17.150 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:33:17.150 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28944 150\n [Camera]
17-03-18 01:33:17.270 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:33:17.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:33:17.350 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:33:17.740 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:33:17.740 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:33:17.740 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:33:17.740 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:33:17.740 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:33:17.740 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:33:17.740 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:33:17.740 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1439269080, 0x0, 391868352) start.
17-03-18 01:33:17.750 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:33:17.750 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:33:17.930 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28944 775
17-03-18 01:33:18.080 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:33:18.140 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1439269080, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 01:33:18.140 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 01:33:18.140 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 01:33:18.140 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:18.140 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:33:18.140 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:18.150 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:33:18.150 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:33:18.150 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 01:33:18.150 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:33:18.270 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:33:18.270 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:33:18.270 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:33:18.270 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:33:18.270 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:33:18.270 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:33:18.380 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:33:18.380 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 01:33:18.380 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:33:18.380 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 01:33:18.460 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:33:18.460 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:33:18.460 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28944 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-18 01:33:18.460 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.132389
17-03-18 01:33:18.460 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13239 mm
17-03-18 01:33:18.460 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:33:18.470 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 01:33:18.470 -07 000000625 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 01:33:18.470 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:18.470 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 28920, sync = True, waitForSettling = False)
17-03-18 01:33:18.470 -07 000000611 INF: Z Motor: Moving to -0.132387 mm, started at -0.131681 mm, distance = -0.71 um
17-03-18 01:33:18.470 -07 000000512 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:33:18.480 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:33:18.480 -07 000000625 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:18.480 -07 000000611 INF: FPGA: Xmit ZDACW 28920\n [Z Motor]
17-03-18 01:33:18.480 -07 000000625 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:33:18.480 -07 000000625 INF: Y Motor: Moving 1339 steps-15
17-03-18 01:33:18.480 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 01:33:18.490 -07 000000611 INF: FPGA: 'ZDACW 28920' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 01:33:18.490 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:18.490 -07 000000576 INF: FPGA: Recv ZDACR 28920
17-03-18 01:33:18.500 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:33:18.500 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:18.500 -07 000000611 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-18 01:33:18.780 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:33:18.780 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:33:18.780 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:18.780 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:33:18.780 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:33:18.780 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:18.780 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:33:18.780 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-18 01:33:18.790 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:33:18.790 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 519 ms.
17-03-18 01:33:18.870 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 01:33:18.870 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:33:18.890 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 3.994908,
17-03-18 01:33:18.930 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:18.930 -07 000000590 INF: FPGA: Recv YRDPOS 129483
17-03-18 01:33:18.940 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:33:18.940 -07 000000625 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:18.940 -07 000000625 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 01:33:18.940 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.109 mm/sec
17-03-18 01:33:19.890 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:19.890 -07 000000479 INF: FPGA: Recv YRDPOS 129483
17-03-18 01:33:19.900 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:19.900 -07 000000625 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:19.920 -07 000000625 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:33:19.920 -07 000000625 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:33:19.920 -07 000000625 INF: Y Motor: Moved to 63.2241 after 1455 ms (table move)
17-03-18 01:33:19.920 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132387 mm (DAC = 28920)
17-03-18 01:33:19.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:19.930 -07 000000479 INF: FPGA: Recv ZSGSRD 29903
17-03-18 01:33:19.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:33:19.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:19.930 -07 000000467 INF: FPGA: Recv ZSGSRD 29894
17-03-18 01:33:19.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:33:19.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:19.940 -07 000000479 INF: FPGA: Recv ZSGSRD 29896
17-03-18 01:33:19.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:19.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:19.950 -07 000000467 INF: FPGA: Recv ZSGSRD 29901
17-03-18 01:33:19.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:19.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:19.960 -07 000000590 INF: FPGA: Recv ZSGSRD 29901
17-03-18 01:33:19.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:19.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:19.970 -07 000000590 INF: FPGA: Recv ZSGSRD 29900
17-03-18 01:33:19.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:19.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:19.980 -07 000000625 INF: FPGA: Recv ZSGSRD 29895
17-03-18 01:33:19.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:19.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:19.990 -07 000000590 INF: FPGA: Recv ZSGSRD 29895
17-03-18 01:33:20.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:20.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:20.000 -07 000000625 INF: FPGA: Recv ZSGSRD 29900
17-03-18 01:33:20.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:20.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:20.010 -07 000000590 INF: FPGA: Recv ZSGSRD 29898
17-03-18 01:33:20.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:20.020 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:20.020 -07 000000479 INF: FPGA: Recv ZPIEZORD 25379
17-03-18 01:33:20.030 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:20.030 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.413 V. Piezo Error = -9.9 V.
17-03-18 01:33:20.030 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29898 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29899 (-131.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29894 (-131.6 uncal um), Max = 29903 (-131.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:33:20.030 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29898, posNoise = 5, negNoise = 4
17-03-18 01:33:20.030 -07 000000610 INF: Z Motor: After move to -0.132387, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:20.030 -07 000000610 INF: Z Motor: Settle wait time = 1456 ms, measure time = 102 ms (allowed 150 ms), total time = 1558 ms
17-03-18 01:33:20.030 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 01:33:20.080 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 01:33:20.080 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:33:20.080 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.132394446625504. ----------
17-03-18 01:33:20.080 -07 000000610 INF: Cycle	88	Tile	5	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:33:20.080 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28744, sync = True, waitForSettling = True)
17-03-18 01:33:20.080 -07 000000610 INF: Z Motor: Moving to -0.131582 mm, started at -0.132394 mm, distance = 0.81 um
17-03-18 01:33:20.080 -07 000000610 INF: FPGA: Xmit ZDACW 28744\n [Z Motor]
17-03-18 01:33:20.080 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:33:20.090 -07 000000610 INF: FPGA: 'ZDACW 28744' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:33:20.090 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:20.090 -07 000000479 INF: FPGA: Recv ZDACR 28744
17-03-18 01:33:20.100 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:20.100 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:33:20.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:20.250 -07 000000479 INF: FPGA: Recv ZSGSRD 29771
17-03-18 01:33:20.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:20.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:20.260 -07 000000467 INF: FPGA: Recv ZSGSRD 29774
17-03-18 01:33:20.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:20.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:20.270 -07 000000590 INF: FPGA: Recv ZSGSRD 29773
17-03-18 01:33:20.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:20.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:20.280 -07 000000479 INF: FPGA: Recv ZSGSRD 29772
17-03-18 01:33:20.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:20.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:20.290 -07 000000467 INF: FPGA: Recv ZSGSRD 29777
17-03-18 01:33:20.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:20.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:20.300 -07 000000625 INF: FPGA: Recv ZSGSRD 29773
17-03-18 01:33:20.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:20.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:20.310 -07 000000479 INF: FPGA: Recv ZSGSRD 29770
17-03-18 01:33:20.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:20.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:20.320 -07 000000467 INF: FPGA: Recv ZSGSRD 29771
17-03-18 01:33:20.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:20.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:20.330 -07 000000590 INF: FPGA: Recv ZSGSRD 29770
17-03-18 01:33:20.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:20.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:20.340 -07 000000479 INF: FPGA: Recv ZSGSRD 29779
17-03-18 01:33:20.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:20.350 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:20.350 -07 000000625 INF: FPGA: Recv ZPIEZORD 25216
17-03-18 01:33:20.360 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:20.360 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.386 V. Piezo Error = -10.0 V.
17-03-18 01:33:20.360 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29773 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29772 (-130.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29770 (-130.8 uncal um), Max = 29779 (-130.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:33:20.360 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29773, posNoise = 6, negNoise = 3
17-03-18 01:33:20.360 -07 000000610 INF: Z Motor: After move to -0.131582, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:20.360 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 01:33:20.360 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:33:20.360 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:33:20.360 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:33:20.360 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:33:20.360 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:33:20.360 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:33:20.360 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:33:20.360 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:33:20.360 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:33:20.360 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:33:20.360 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:33:20.360 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:33:20.370 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:33:20.370 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:33:20.370 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:33:20.370 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:33:20.380 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:33:20.380 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:33:20.380 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:33:20.380 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:33:20.390 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28920 150\n [Camera]
17-03-18 01:33:20.590 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:33:20.980 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:33:20.980 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:33:20.980 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:33:20.980 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:33:20.980 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 01:33:20.980 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:33:20.980 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:33:20.980 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:33:20.990 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:33:20.990 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 01:33:21.170 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28920 775
17-03-18 01:33:21.320 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:33:21.370 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 01:33:21.370 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 01:33:21.370 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:21.370 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:33:21.370 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:33:21.370 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 01:33:21.370 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 01:33:21.370 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:21.380 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:33:21.380 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:33:21.510 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:33:21.510 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:33:21.510 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:33:21.510 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:33:21.510 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:33:21.510 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:33:21.510 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:33:21.510 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 01:33:21.510 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:33:21.520 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:33:21.700 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:33:21.700 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:33:21.700 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28920 150' command took 2 ms to send, 1303 ms to get response, and 1312 ms overall
17-03-18 01:33:21.700 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.132031
17-03-18 01:33:21.700 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13203 mm
17-03-18 01:33:21.700 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:33:21.700 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 01:33:21.700 -07 000000625 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 01:33:21.700 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 28842, sync = True, waitForSettling = False)
17-03-18 01:33:21.700 -07 000000479 INF: Z Motor: Moving to -0.132030 mm, started at -0.131591 mm, distance = -0.44 um
17-03-18 01:33:21.700 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:21.710 -07 000000479 INF: FPGA: Xmit ZDACW 28842\n [Z Motor]
17-03-18 01:33:21.710 -07 000000502 INF: FPGA: Recv YRDPOS 129484
17-03-18 01:33:21.710 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:33:21.710 -07 000000625 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:21.710 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 01:33:21.710 -07 000000625 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:33:21.710 -07 000000625 INF: Y Motor: Moving 1341 steps-17
17-03-18 01:33:21.720 -07 000000479 INF: FPGA: 'ZDACW 28842' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:33:21.720 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:21.720 -07 000000502 INF: FPGA: Recv ZDACR 28842
17-03-18 01:33:21.730 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:21.730 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:33:21.730 -07 000000479 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-18 01:33:21.890 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 01:33:21.890 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 01:33:21.890 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:21.890 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 01:33:21.890 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 01:33:21.890 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:21.890 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:33:21.890 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 01:33:21.890 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:33:21.900 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 01:33:22.100 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 01:33:22.100 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 01:33:22.150 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:22.150 -07 000000590 INF: FPGA: Recv YRDPOS 131189
17-03-18 01:33:22.160 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:33:22.160 -07 000000625 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:22.160 -07 000000625 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-18 01:33:22.160 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.838 mm, average velocity = 2.139 mm/sec
17-03-18 01:33:22.270 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:33:22.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:33:23.110 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:23.110 -07 000000467 INF: FPGA: Recv YRDPOS 131189
17-03-18 01:33:23.120 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:23.120 -07 000000625 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:23.140 -07 000000625 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:33:23.140 -07 000000625 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:33:23.140 -07 000000625 INF: Y Motor: Moved to 64.0571 after 1436 ms (table move)
17-03-18 01:33:23.140 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132030 mm (DAC = 28842)
17-03-18 01:33:23.140 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:23.140 -07 000000561 INF: FPGA: Recv ZSGSRD 29838
17-03-18 01:33:23.150 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:33:23.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:23.150 -07 000000512 INF: FPGA: Recv ZSGSRD 29834
17-03-18 01:33:23.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:23.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:23.160 -07 000000487 INF: FPGA: Recv ZSGSRD 29843
17-03-18 01:33:23.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:23.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:23.170 -07 000000502 INF: FPGA: Recv ZSGSRD 29842
17-03-18 01:33:23.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:23.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:23.180 -07 000000501 INF: FPGA: Recv ZSGSRD 29844
17-03-18 01:33:23.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:23.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:23.190 -07 000000585 INF: FPGA: Recv ZSGSRD 29840
17-03-18 01:33:23.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:23.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:23.200 -07 000000501 INF: FPGA: Recv ZSGSRD 29845
17-03-18 01:33:23.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:23.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:23.210 -07 000000501 INF: FPGA: Recv ZSGSRD 29839
17-03-18 01:33:23.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:33:23.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:23.220 -07 000000501 INF: FPGA: Recv ZSGSRD 29834
17-03-18 01:33:23.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:23.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:23.230 -07 000000501 INF: FPGA: Recv ZSGSRD 29841
17-03-18 01:33:23.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:23.240 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:23.240 -07 000000501 INF: FPGA: Recv ZPIEZORD 25350
17-03-18 01:33:23.250 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:23.250 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.401 V. Piezo Error = -9.9 V.
17-03-18 01:33:23.250 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29840 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29840 (-131.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29834 (-131.2 uncal um), Max = 29845 (-131.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:33:23.250 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29840, posNoise = 5, negNoise = 6
17-03-18 01:33:23.250 -07 000000610 INF: Z Motor: After move to -0.132030, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:23.250 -07 000000610 INF: Z Motor: Settle wait time = 1437 ms, measure time = 105 ms (allowed 150 ms), total time = 1542 ms
17-03-18 01:33:23.250 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 01:33:23.300 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-18 01:33:23.300 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:33:23.300 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.132021842321282. ----------
17-03-18 01:33:23.300 -07 000000610 INF: Cycle	88	Tile	6	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:33:23.300 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28665, sync = True, waitForSettling = True)
17-03-18 01:33:23.300 -07 000000610 INF: Z Motor: Moving to -0.131220 mm, started at -0.132022 mm, distance = 0.80 um
17-03-18 01:33:23.300 -07 000000610 INF: FPGA: Xmit ZDACW 28665\n [Z Motor]
17-03-18 01:33:23.300 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 01:33:23.310 -07 000000610 INF: FPGA: 'ZDACW 28665' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:33:23.310 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:23.310 -07 000000501 INF: FPGA: Recv ZDACR 28665
17-03-18 01:33:23.320 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:23.320 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:33:23.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:23.470 -07 000000501 INF: FPGA: Recv ZSGSRD 29715
17-03-18 01:33:23.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:23.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:23.480 -07 000000585 INF: FPGA: Recv ZSGSRD 29721
17-03-18 01:33:23.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:23.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:23.490 -07 000000585 INF: FPGA: Recv ZSGSRD 29718
17-03-18 01:33:23.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:23.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:23.500 -07 000000501 INF: FPGA: Recv ZSGSRD 29717
17-03-18 01:33:23.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:23.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:23.510 -07 000000501 INF: FPGA: Recv ZSGSRD 29717
17-03-18 01:33:23.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:23.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:23.520 -07 000000585 INF: FPGA: Recv ZSGSRD 29715
17-03-18 01:33:23.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:23.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:23.530 -07 000000501 INF: FPGA: Recv ZSGSRD 29712
17-03-18 01:33:23.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:23.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:23.540 -07 000000501 INF: FPGA: Recv ZSGSRD 29711
17-03-18 01:33:23.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:23.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:23.550 -07 000000501 INF: FPGA: Recv ZSGSRD 29718
17-03-18 01:33:23.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:23.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:23.560 -07 000000501 INF: FPGA: Recv ZSGSRD 29719
17-03-18 01:33:23.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:23.570 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:23.570 -07 000000501 INF: FPGA: Recv ZPIEZORD 25167
17-03-18 01:33:23.580 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:23.580 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.374 V. Piezo Error = -10.0 V.
17-03-18 01:33:23.580 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29716 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29717 (-130.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29711 (-130.4 uncal um), Max = 29721 (-130.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:33:23.580 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29716, posNoise = 5, negNoise = 5
17-03-18 01:33:23.580 -07 000000610 INF: Z Motor: After move to -0.131220, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:23.580 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:33:23.580 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:33:23.580 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:33:23.580 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:33:23.580 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:33:23.590 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:33:23.590 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:33:23.590 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:33:23.590 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:33:23.590 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:33:23.590 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:33:23.590 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:33:23.590 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:33:23.590 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:33:23.590 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:33:23.590 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:33:23.590 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:33:23.600 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 01:33:23.600 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 01:33:23.600 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 01:33:23.600 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 01:33:23.610 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28842 150\n [Camera]
17-03-18 01:33:23.810 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:33:24.200 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:33:24.200 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:33:24.200 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:33:24.200 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:33:24.200 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:33:24.200 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:33:24.200 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:33:24.200 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 01:33:24.200 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:33:24.200 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 01:33:24.250 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 3.996267,
17-03-18 01:33:24.390 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28842 775
17-03-18 01:33:24.540 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:33:24.600 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:33:24.600 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:33:24.600 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:24.600 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:33:24.600 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:33:24.600 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:24.600 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:33:24.600 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:33:24.600 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:33:24.610 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:33:24.730 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:33:24.730 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:33:24.730 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:33:24.730 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:33:24.730 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:33:24.730 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:33:24.730 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:33:24.730 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:33:24.730 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:33:24.730 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-18 01:33:24.920 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:33:24.920 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:33:24.920 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28842 150' command took 2 ms to send, 1304 ms to get response, and 1312 ms overall
17-03-18 01:33:24.920 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:33:24.920 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131225240015704. ------
17-03-18 01:33:24.930 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13790 mm
17-03-18 01:33:24.930 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:33:24.930 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:33:24.930 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:33:24.930 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 01:33:24.930 -07 000000487 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 01:33:24.930 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30124, sync = True, waitForSettling = False)
17-03-18 01:33:24.930 -07 000000569 INF: Z Motor: Moving to -0.137899 mm, started at -0.131225 mm, distance = -6.67 um
17-03-18 01:33:24.940 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:33:24.940 -07 000000569 INF: FPGA: Xmit ZDACW 30124\n [Z Motor]
17-03-18 01:33:24.940 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:33:24.950 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:24.950 -07 000000569 INF: FPGA: 'ZDACW 30124' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:33:24.950 -07 000000626 INF: FPGA: Recv YRDPOS 131189
17-03-18 01:33:24.960 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:33:24.960 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 01:33:24.960 -07 000000487 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:24.960 -07 000000487 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:33:24.960 -07 000000487 INF: Y Motor: Moving 1337 steps-11
17-03-18 01:33:24.970 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:24.970 -07 000000611 INF: FPGA: Recv ZDACR 30124
17-03-18 01:33:24.980 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:33:24.980 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:33:24.980 -07 000000569 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 01:33:25.120 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 01:33:25.120 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 01:33:25.120 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:25.120 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 01:33:25.120 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 01:33:25.120 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:25.120 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:33:25.120 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:33:25.130 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:33:25.140 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 01:33:25.160 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:33:25.160 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:33:25.350 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 01:33:25.350 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:33:25.400 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:25.400 -07 000000569 INF: FPGA: Recv YRDPOS 132872
17-03-18 01:33:25.410 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:33:25.410 -07 000000487 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:25.410 -07 000000487 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:33:25.410 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.835 mm, average velocity = 2.099 mm/sec
17-03-18 01:33:26.360 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:26.360 -07 000000501 INF: FPGA: Recv YRDPOS 132872
17-03-18 01:33:26.370 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:26.370 -07 000000487 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:26.390 -07 000000487 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:33:26.390 -07 000000487 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:33:26.390 -07 000000487 INF: Y Motor: Moved to 64.8789 after 1462 ms (table move)
17-03-18 01:33:26.400 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137899 mm (DAC = 30124)
17-03-18 01:33:26.400 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:26.400 -07 000000626 INF: FPGA: Recv ZSGSRD 30746
17-03-18 01:33:26.410 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:26.410 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:26.410 -07 000000576 INF: FPGA: Recv ZSGSRD 30748
17-03-18 01:33:26.420 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:26.420 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:26.420 -07 000000487 INF: FPGA: Recv ZSGSRD 30757
17-03-18 01:33:26.430 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:26.430 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:26.430 -07 000000576 INF: FPGA: Recv ZSGSRD 30761
17-03-18 01:33:26.440 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:26.440 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:26.440 -07 000000487 INF: FPGA: Recv ZSGSRD 30761
17-03-18 01:33:26.450 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:26.450 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:26.450 -07 000000512 INF: FPGA: Recv ZSGSRD 30754
17-03-18 01:33:26.460 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:26.460 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:26.460 -07 000000487 INF: FPGA: Recv ZSGSRD 30749
17-03-18 01:33:26.470 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:26.470 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:27.400 -07 000000569 INF: FPGA: Recv ZSGSRD 30751
17-03-18 01:33:27.400 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:33:27.400 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 923 ms to get response, and 933 ms overall
17-03-18 01:33:27.400 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:27.400 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:33:27.400 -07 000000626 INF: FPGA: Recv ZSGSRD 30758
17-03-18 01:33:27.410 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:33:27.410 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:27.410 -07 000000501 INF: FPGA: Recv ZSGSRD 30749
17-03-18 01:33:27.420 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:27.420 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:27.420 -07 000000626 INF: FPGA: Recv ZPIEZORD 26552
17-03-18 01:33:27.430 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:27.430 -07 000000591 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.597 V. Piezo Error = -9.2 V.
17-03-18 01:33:27.430 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30753 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30752 (-137.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30746 (-137.0 uncal um), Max = 30761 (-137.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:33:27.430 -07 000000591 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30753, posNoise = 8, negNoise = 7
17-03-18 01:33:27.430 -07 000000591 INF: Z Motor: After move to -0.137899, error = 0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:27.430 -07 000000591 INF: Z Motor: Settle wait time = 1464 ms, measure time = 1030 ms (allowed 150 ms), total time = 2494 ms
17-03-18 01:33:27.430 -07 000000591 INF: Z Motor: Warning: Actual position measuring time = 1030 ms, longer than max expected time of 150 ms
17-03-18 01:33:27.430 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2499 ms
17-03-18 01:33:27.430 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:33:27.430 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:33:27.430 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:33:27.430 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:33:27.430 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:33:27.430 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:33:27.430 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:33:27.430 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:33:27.430 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:33:27.440 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:33:27.440 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:33:27.440 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:33:27.440 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:33:27.450 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:33:27.490 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:33:27.790 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:33:27.790 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:33:27.790 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:33:27.900 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:33:27.900 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 01:33:27.900 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 446 ms to get response, and 455 ms overall
17-03-18 01:33:27.900 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 01:33:28.020 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:33:28.020 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:28.020 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:33:28.020 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 226 ms.
17-03-18 01:33:28.100 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:33:28.100 -07 000000591 INF: Autofocus start
17-03-18 01:33:28.100 -07 000000591 INF: MeasureProfile start
17-03-18 01:33:28.100 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:33:28.110 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:33:28.110 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:33:28.110 -07 000000591 INF: MeasureProfile done
17-03-18 01:33:28.110 -07 000000591 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 01:33:28.110 -07 000000591 INF: Autofocus finished
17-03-18 01:33:28.310 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:33:28.310 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:33:28.310 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.13788714800671. ----------
17-03-18 01:33:28.310 -07 000000610 INF: Cycle	88	Tile	7	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:33:28.320 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28619, sync = True, waitForSettling = True)
17-03-18 01:33:28.320 -07 000000610 INF: Z Motor: Moving to -0.131009 mm, started at -0.137887 mm, distance = 6.88 um
17-03-18 01:33:28.320 -07 000000610 INF: FPGA: Xmit ZDACW 28619\n [Z Motor]
17-03-18 01:33:28.320 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 01:33:28.330 -07 000000610 INF: FPGA: 'ZDACW 28619' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:33:28.330 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:28.330 -07 000000487 INF: FPGA: Recv ZDACR 28619
17-03-18 01:33:28.340 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:28.340 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:33:28.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:28.490 -07 000000576 INF: FPGA: Recv ZSGSRD 29680
17-03-18 01:33:28.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:28.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:28.500 -07 000000487 INF: FPGA: Recv ZSGSRD 29684
17-03-18 01:33:28.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:28.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:28.510 -07 000000611 INF: FPGA: Recv ZSGSRD 29682
17-03-18 01:33:28.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:28.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:28.520 -07 000000569 INF: FPGA: Recv ZSGSRD 29681
17-03-18 01:33:28.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:28.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:28.530 -07 000000629 INF: FPGA: Recv ZSGSRD 29690
17-03-18 01:33:28.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:28.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:28.540 -07 000000626 INF: FPGA: Recv ZSGSRD 29683
17-03-18 01:33:28.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:28.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:28.550 -07 000000576 INF: FPGA: Recv ZSGSRD 29683
17-03-18 01:33:28.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:28.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:28.560 -07 000000569 INF: FPGA: Recv ZSGSRD 29683
17-03-18 01:33:28.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:28.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:28.570 -07 000000629 INF: FPGA: Recv ZSGSRD 29687
17-03-18 01:33:28.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:28.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:28.580 -07 000000487 INF: FPGA: Recv ZSGSRD 29683
17-03-18 01:33:28.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:28.590 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:28.590 -07 000000611 INF: FPGA: Recv ZPIEZORD 25138
17-03-18 01:33:28.600 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:28.600 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.367 V. Piezo Error = -10.0 V.
17-03-18 01:33:28.600 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29684 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29683 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29680 (-130.2 uncal um), Max = 29690 (-130.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:33:28.600 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29684, posNoise = 6, negNoise = 4
17-03-18 01:33:28.600 -07 000000610 INF: Z Motor: After move to -0.131009, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:28.600 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:33:28.600 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:33:28.600 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:33:28.600 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:33:28.600 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:33:28.600 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:33:28.600 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:33:28.600 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:33:28.600 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:33:28.600 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:33:28.600 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:33:28.600 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:33:28.600 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:33:28.610 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:33:28.610 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:33:28.610 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:33:28.610 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:33:28.620 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:33:28.620 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:33:28.620 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:33:28.620 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:33:28.620 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28796 150\n [Camera]
17-03-18 01:33:28.820 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:33:29.210 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:33:29.210 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:33:29.220 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:33:29.220 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:33:29.220 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:33:29.220 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:33:29.220 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:33:29.220 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:33:29.220 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:33:29.220 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:33:29.410 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28796 775
17-03-18 01:33:29.560 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:33:29.610 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 01:33:29.610 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 01:33:29.610 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:29.610 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.019446,
17-03-18 01:33:29.610 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:33:29.620 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:33:29.620 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 01:33:29.620 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:33:29.620 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:29.620 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:33:29.620 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 01:33:29.750 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:33:29.750 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:33:29.750 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:33:29.750 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:33:29.750 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:33:29.750 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:33:29.860 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:33:29.860 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 01:33:29.870 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:33:29.870 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 01:33:29.940 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:33:29.940 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:33:29.940 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28796 150' command took 2 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-18 01:33:29.940 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.131611
17-03-18 01:33:29.940 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13161 mm
17-03-18 01:33:29.940 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:33:29.940 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 01:33:29.940 -07 000000569 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 01:33:29.940 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:29.940 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 28750, sync = True, waitForSettling = False)
17-03-18 01:33:29.940 -07 000000585 INF: Z Motor: Moving to -0.131609 mm, started at -0.131020 mm, distance = -0.59 um
17-03-18 01:33:29.940 -07 000000626 INF: FPGA: Recv YRDPOS 132873
17-03-18 01:33:29.950 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:33:29.950 -07 000000569 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:29.950 -07 000000585 INF: FPGA: Xmit ZDACW 28750\n [Z Motor]
17-03-18 01:33:29.950 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:33:29.950 -07 000000569 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:33:29.950 -07 000000569 INF: Y Motor: Moving 1349 steps-28
17-03-18 01:33:29.960 -07 000000585 INF: FPGA: 'ZDACW 28750' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:33:29.960 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:33:29.970 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:29.970 -07 000000487 INF: FPGA: Recv ZDACR 28750
17-03-18 01:33:29.980 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:33:29.980 -07 000000585 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 01:33:30.260 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:33:30.260 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:33:30.260 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:30.260 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:33:30.260 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:33:30.260 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:30.260 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:33:30.270 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:33:30.270 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-18 01:33:30.270 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 522 ms.
17-03-18 01:33:30.330 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 01:33:30.330 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 01:33:30.380 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:30.380 -07 000000591 INF: FPGA: Recv YRDPOS 134583
17-03-18 01:33:30.390 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:30.390 -07 000000569 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:30.390 -07 000000569 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 01:33:30.390 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.844 mm, average velocity = 2.203 mm/sec
17-03-18 01:33:31.340 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:31.340 -07 000000626 INF: FPGA: Recv YRDPOS 134583
17-03-18 01:33:31.350 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:31.350 -07 000000569 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:31.370 -07 000000569 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:33:31.370 -07 000000569 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:33:31.370 -07 000000569 INF: Y Motor: Moved to 65.7144 after 1432 ms (table move)
17-03-18 01:33:31.380 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131609 mm (DAC = 28750)
17-03-18 01:33:31.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:31.380 -07 000000569 INF: FPGA: Recv ZSGSRD 29776
17-03-18 01:33:31.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:33:31.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:31.390 -07 000000626 INF: FPGA: Recv ZSGSRD 29777
17-03-18 01:33:31.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:31.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:31.400 -07 000000474 INF: FPGA: Recv ZSGSRD 29781
17-03-18 01:33:31.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:31.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:31.410 -07 000000585 INF: FPGA: Recv ZSGSRD 29778
17-03-18 01:33:31.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:31.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:31.420 -07 000000474 INF: FPGA: Recv ZSGSRD 29784
17-03-18 01:33:31.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:31.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:31.430 -07 000000585 INF: FPGA: Recv ZSGSRD 29771
17-03-18 01:33:31.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:31.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:31.440 -07 000000626 INF: FPGA: Recv ZSGSRD 29773
17-03-18 01:33:31.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:31.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:31.450 -07 000000611 INF: FPGA: Recv ZSGSRD 29770
17-03-18 01:33:31.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:31.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:31.460 -07 000000591 INF: FPGA: Recv ZSGSRD 29777
17-03-18 01:33:31.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:31.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:31.470 -07 000000629 INF: FPGA: Recv ZSGSRD 29770
17-03-18 01:33:31.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:31.480 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:31.480 -07 000000569 INF: FPGA: Recv ZPIEZORD 25297
17-03-18 01:33:31.490 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:31.490 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.387 V. Piezo Error = -9.8 V.
17-03-18 01:33:31.490 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29776 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29776 (-130.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29770 (-130.8 uncal um), Max = 29784 (-130.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:33:31.490 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29776, posNoise = 8, negNoise = 6
17-03-18 01:33:31.490 -07 000000610 INF: Z Motor: After move to -0.131609, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:31.490 -07 000000610 INF: Z Motor: Settle wait time = 1435 ms, measure time = 108 ms (allowed 150 ms), total time = 1543 ms
17-03-18 01:33:31.490 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:33:31.540 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-18 01:33:31.540 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:33:31.540 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.131610692744209. ----------
17-03-18 01:33:31.540 -07 000000610 INF: Cycle	88	Tile	8	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:33:31.540 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28574, sync = True, waitForSettling = True)
17-03-18 01:33:31.540 -07 000000610 INF: Z Motor: Moving to -0.130803 mm, started at -0.131611 mm, distance = 0.81 um
17-03-18 01:33:31.540 -07 000000610 INF: FPGA: Xmit ZDACW 28574\n [Z Motor]
17-03-18 01:33:31.540 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 01:33:31.550 -07 000000610 INF: FPGA: 'ZDACW 28574' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:33:31.550 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:31.550 -07 000000611 INF: FPGA: Recv ZDACR 28574
17-03-18 01:33:31.560 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:31.560 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:33:31.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:31.710 -07 000000629 INF: FPGA: Recv ZSGSRD 29653
17-03-18 01:33:31.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:31.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:31.720 -07 000000611 INF: FPGA: Recv ZSGSRD 29656
17-03-18 01:33:31.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:31.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:31.730 -07 000000629 INF: FPGA: Recv ZSGSRD 29654
17-03-18 01:33:31.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:31.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:31.740 -07 000000611 INF: FPGA: Recv ZSGSRD 29650
17-03-18 01:33:31.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:31.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:31.750 -07 000000576 INF: FPGA: Recv ZSGSRD 29652
17-03-18 01:33:31.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:31.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:31.760 -07 000000585 INF: FPGA: Recv ZSGSRD 29652
17-03-18 01:33:31.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:31.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:31.770 -07 000000629 INF: FPGA: Recv ZSGSRD 29650
17-03-18 01:33:31.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:31.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:31.780 -07 000000626 INF: FPGA: Recv ZSGSRD 29653
17-03-18 01:33:31.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:31.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:31.790 -07 000000629 INF: FPGA: Recv ZSGSRD 29652
17-03-18 01:33:31.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:31.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:31.800 -07 000000626 INF: FPGA: Recv ZSGSRD 29654
17-03-18 01:33:31.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:31.810 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:31.810 -07 000000591 INF: FPGA: Recv ZPIEZORD 25144
17-03-18 01:33:31.820 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:31.820 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.360 V. Piezo Error = -9.9 V.
17-03-18 01:33:31.820 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29653 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29652 (-130.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29650 (-130.0 uncal um), Max = 29656 (-130.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:33:31.820 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29653, posNoise = 3, negNoise = 3
17-03-18 01:33:31.820 -07 000000610 INF: Z Motor: After move to -0.130803, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:31.820 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 01:33:31.820 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:33:31.820 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:33:31.820 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:33:31.820 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:33:31.820 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:33:31.820 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:33:31.820 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:33:31.820 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:33:31.820 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:33:31.820 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:33:31.820 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:33:31.820 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:33:31.830 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:33:31.830 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:33:31.830 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:33:31.830 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:33:31.840 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:33:31.840 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:33:31.840 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 01:33:31.840 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:33:31.840 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28750 150\n [Camera]
17-03-18 01:33:32.040 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:33:32.270 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:33:32.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:33:32.430 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:33:32.430 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:33:32.430 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:33:32.430 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:33:32.430 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:33:32.430 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:33:32.430 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:33:32.430 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 01:33:32.440 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:33:32.440 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:33:32.620 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28750 775
17-03-18 01:33:32.770 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:33:32.830 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:33:32.830 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:33:32.830 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:32.830 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 01:33:32.830 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:33:32.830 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:32.840 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:33:32.840 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:33:32.840 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:33:32.840 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:33:32.960 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:33:32.960 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:33:32.960 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:33:32.960 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:33:32.960 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:33:32.960 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:33:32.960 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:33:32.960 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 01:33:32.970 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:33:32.970 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 01:33:33.150 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:33:33.150 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:33:33.150 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28750 150' command took 2 ms to send, 1307 ms to get response, and 1313 ms overall
17-03-18 01:33:33.150 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.131184
17-03-18 01:33:33.150 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13118 mm
17-03-18 01:33:33.150 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:33:33.160 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 01:33:33.160 -07 000000585 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-18 01:33:33.160 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:33.160 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 28657, sync = True, waitForSettling = False)
17-03-18 01:33:33.160 -07 000000611 INF: Z Motor: Moving to -0.131183 mm, started at -0.130821 mm, distance = -0.36 um
17-03-18 01:33:33.160 -07 000000591 INF: FPGA: Recv YRDPOS 134583
17-03-18 01:33:33.170 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:33:33.170 -07 000000585 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:33.170 -07 000000585 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:33:33.170 -07 000000585 INF: Y Motor: Moving 1341 steps-17
17-03-18 01:33:33.170 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:33:33.180 -07 000000611 INF: FPGA: Xmit ZDACW 28657\n [Z Motor]
17-03-18 01:33:33.180 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 01:33:33.190 -07 000000611 INF: FPGA: 'ZDACW 28657' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 01:33:33.190 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:33.190 -07 000000629 INF: FPGA: Recv ZDACR 28657
17-03-18 01:33:33.200 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:33.200 -07 000000611 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 01:33:33.360 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 01:33:33.360 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 01:33:33.360 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:33.360 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 01:33:33.360 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:33:33.360 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:33.360 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:33:33.360 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:33:33.360 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:33:33.370 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:33:33.540 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 01:33:33.540 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-18 01:33:33.590 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:33.590 -07 000000629 INF: FPGA: Recv YRDPOS 136272
17-03-18 01:33:33.600 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:33:33.600 -07 000000585 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:33.600 -07 000000585 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:33:33.600 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.838 mm, average velocity = 2.212 mm/sec
17-03-18 01:33:34.550 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:34.550 -07 000000626 INF: FPGA: Recv YRDPOS 136272
17-03-18 01:33:34.560 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:34.560 -07 000000585 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:34.580 -07 000000585 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:33:34.580 -07 000000585 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:33:34.580 -07 000000585 INF: Y Motor: Moved to 66.5391 after 1424 ms (table move)
17-03-18 01:33:34.590 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131183 mm (DAC = 28657)
17-03-18 01:33:34.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:34.590 -07 000000474 INF: FPGA: Recv ZSGSRD 29719
17-03-18 01:33:34.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:34.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:34.600 -07 000000585 INF: FPGA: Recv ZSGSRD 29716
17-03-18 01:33:34.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:34.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:34.610 -07 000000629 INF: FPGA: Recv ZSGSRD 29711
17-03-18 01:33:34.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:34.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:34.620 -07 000000585 INF: FPGA: Recv ZSGSRD 29709
17-03-18 01:33:34.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:34.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:34.630 -07 000000585 INF: FPGA: Recv ZSGSRD 29709
17-03-18 01:33:34.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:34.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:34.640 -07 000000629 INF: FPGA: Recv ZSGSRD 29709
17-03-18 01:33:34.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:34.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:34.660 -07 000000591 INF: FPGA: Recv ZSGSRD 29710
17-03-18 01:33:34.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:33:34.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:34.670 -07 000000626 INF: FPGA: Recv ZSGSRD 29702
17-03-18 01:33:34.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:34.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:34.680 -07 000000585 INF: FPGA: Recv ZSGSRD 29713
17-03-18 01:33:34.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:34.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:34.690 -07 000000629 INF: FPGA: Recv ZSGSRD 29712
17-03-18 01:33:34.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:34.700 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:34.700 -07 000000626 INF: FPGA: Recv ZPIEZORD 25225
17-03-18 01:33:34.710 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:34.710 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.373 V. Piezo Error = -9.8 V.
17-03-18 01:33:34.710 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29711 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29710 (-130.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29702 (-130.4 uncal um), Max = 29719 (-130.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:33:34.710 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29711, posNoise = 8, negNoise = 9
17-03-18 01:33:34.710 -07 000000610 INF: Z Motor: After move to -0.131183, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:34.710 -07 000000610 INF: Z Motor: Settle wait time = 1426 ms, measure time = 120 ms (allowed 150 ms), total time = 1546 ms
17-03-18 01:33:34.710 -07 000000610 INF: Z Motor: Waiting extra 30 ms after reading position to reach expected total of 150 ms
17-03-18 01:33:34.740 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1580 ms
17-03-18 01:33:34.740 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:33:34.740 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.131193118954995. ----------
17-03-18 01:33:34.740 -07 000000610 INF: Cycle	88	Tile	9	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:33:34.740 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28480, sync = True, waitForSettling = True)
17-03-18 01:33:34.740 -07 000000610 INF: Z Motor: Moving to -0.130373 mm, started at -0.131193 mm, distance = 0.82 um
17-03-18 01:33:34.740 -07 000000610 INF: FPGA: Xmit ZDACW 28480\n [Z Motor]
17-03-18 01:33:34.740 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:33:34.750 -07 000000610 INF: FPGA: 'ZDACW 28480' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:33:34.750 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:34.750 -07 000000629 INF: FPGA: Recv ZDACR 28480
17-03-18 01:33:34.760 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:34.760 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:33:34.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:34.910 -07 000000591 INF: FPGA: Recv ZSGSRD 29592
17-03-18 01:33:34.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:34.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:34.920 -07 000000626 INF: FPGA: Recv ZSGSRD 29589
17-03-18 01:33:34.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:34.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:34.930 -07 000000474 INF: FPGA: Recv ZSGSRD 29579
17-03-18 01:33:34.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:34.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:34.940 -07 000000611 INF: FPGA: Recv ZSGSRD 29579
17-03-18 01:33:34.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:34.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:34.950 -07 000000591 INF: FPGA: Recv ZSGSRD 29590
17-03-18 01:33:34.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:34.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:34.970 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.000345,
17-03-18 01:33:34.970 -07 000000626 INF: FPGA: Recv ZSGSRD 29576
17-03-18 01:33:34.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:33:34.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:34.980 -07 000000629 INF: FPGA: Recv ZSGSRD 29585
17-03-18 01:33:34.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:35.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:35.010 -07 000000591 INF: FPGA: Recv ZSGSRD 29579
17-03-18 01:33:35.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:33:35.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:35.040 -07 000000474 INF: FPGA: Recv ZSGSRD 29582
17-03-18 01:33:35.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 01:33:35.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:35.050 -07 000000626 INF: FPGA: Recv ZSGSRD 29581
17-03-18 01:33:35.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:35.060 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:35.060 -07 000000591 INF: FPGA: Recv ZPIEZORD 25027
17-03-18 01:33:35.070 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:35.070 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.346 V. Piezo Error = -10.0 V.
17-03-18 01:33:35.070 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29583 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29582 (-129.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29576 (-129.5 uncal um), Max = 29592 (-129.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:33:35.070 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29583, posNoise = 9, negNoise = 7
17-03-18 01:33:35.070 -07 000000610 INF: Z Motor: After move to -0.130373, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:35.070 -07 000000610 INF: Z Motor: MoveAbsStepped took 324 ms)
17-03-18 01:33:35.070 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:33:35.070 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:33:35.070 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:33:35.070 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:33:35.070 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:33:35.070 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:33:35.070 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:33:35.070 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:33:35.070 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:33:35.070 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:33:35.070 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:33:35.070 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:33:35.080 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:33:35.080 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:33:35.080 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:33:35.080 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:33:35.090 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:33:35.090 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:33:35.090 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:33:35.090 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:33:35.090 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28657 150\n [Camera]
17-03-18 01:33:35.290 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:33:35.690 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 01:33:35.690 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 01:33:35.690 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:33:35.690 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 01:33:35.690 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 01:33:35.690 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:33:35.690 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:33:35.690 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:33:35.690 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:33:35.690 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 01:33:35.880 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28657 775
17-03-18 01:33:36.030 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:33:36.070 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 01:33:36.070 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 01:33:36.070 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:36.070 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 01:33:36.070 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 01:33:36.070 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:36.070 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:33:36.070 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 01:33:36.080 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:33:36.080 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 01:33:36.220 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:33:36.220 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:33:36.220 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:33:36.220 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:33:36.220 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-18 01:33:36.220 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:33:36.220 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:33:36.220 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:33:36.220 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:33:36.220 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-18 01:33:36.410 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:33:36.410 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:33:36.410 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28657 150' command took 2 ms to send, 1302 ms to get response, and 1312 ms overall
17-03-18 01:33:36.410 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.131276
17-03-18 01:33:36.410 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13128 mm
17-03-18 01:33:36.410 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:33:36.410 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 01:33:36.410 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 28677, sync = True, waitForSettling = False)
17-03-18 01:33:36.410 -07 000000611 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 01:33:36.410 -07 000000479 INF: Z Motor: Moving to -0.131275 mm, started at -0.130371 mm, distance = -0.90 um
17-03-18 01:33:36.410 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:36.420 -07 000000626 INF: FPGA: Recv YRDPOS 136272
17-03-18 01:33:36.420 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:33:36.420 -07 000000611 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:36.420 -07 000000611 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:33:36.420 -07 000000611 INF: Y Motor: Moving 1350 steps-28
17-03-18 01:33:36.420 -07 000000479 INF: FPGA: Xmit ZDACW 28677\n [Z Motor]
17-03-18 01:33:36.420 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:33:36.430 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:33:36.430 -07 000000479 INF: FPGA: 'ZDACW 28677' command took 1 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:33:36.440 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:36.440 -07 000000591 INF: FPGA: Recv ZDACR 28677
17-03-18 01:33:36.450 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:33:36.450 -07 000000479 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-18 01:33:36.610 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 01:33:36.610 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 01:33:36.610 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:36.610 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 01:33:36.610 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 01:33:36.610 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:36.610 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:33:36.610 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:33:36.610 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:33:36.620 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:33:36.800 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 01:33:36.800 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 01:33:36.850 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:36.850 -07 000000467 INF: FPGA: Recv YRDPOS 137977
17-03-18 01:33:36.860 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:36.860 -07 000000611 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:36.860 -07 000000611 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 01:33:36.860 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.180 mm/sec
17-03-18 01:33:37.270 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:33:37.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:33:37.810 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:37.810 -07 000000625 INF: FPGA: Recv YRDPOS 137978
17-03-18 01:33:37.820 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:37.820 -07 000000611 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:37.840 -07 000000611 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:33:37.840 -07 000000611 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:33:37.840 -07 000000611 INF: Y Motor: Moved to 67.3721 after 1429 ms (table move)
17-03-18 01:33:37.840 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131275 mm (DAC = 28677)
17-03-18 01:33:37.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:37.850 -07 000000467 INF: FPGA: Recv ZSGSRD 29723
17-03-18 01:33:37.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 01:33:37.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:37.850 -07 000000585 INF: FPGA: Recv ZSGSRD 29726
17-03-18 01:33:37.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:33:37.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:37.860 -07 000000611 INF: FPGA: Recv ZSGSRD 29729
17-03-18 01:33:37.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:37.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:37.870 -07 000000467 INF: FPGA: Recv ZSGSRD 29721
17-03-18 01:33:37.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:37.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:37.880 -07 000000585 INF: FPGA: Recv ZSGSRD 29723
17-03-18 01:33:37.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:37.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:37.890 -07 000000467 INF: FPGA: Recv ZSGSRD 29734
17-03-18 01:33:37.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:37.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:37.900 -07 000000611 INF: FPGA: Recv ZSGSRD 29730
17-03-18 01:33:37.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:37.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:37.910 -07 000000467 INF: FPGA: Recv ZSGSRD 29726
17-03-18 01:33:37.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:37.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:37.920 -07 000000611 INF: FPGA: Recv ZSGSRD 29715
17-03-18 01:33:37.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:37.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:37.930 -07 000000467 INF: FPGA: Recv ZSGSRD 29720
17-03-18 01:33:37.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:37.940 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:37.940 -07 000000591 INF: FPGA: Recv ZPIEZORD 25215
17-03-18 01:33:37.950 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:37.950 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.376 V. Piezo Error = -9.9 V.
17-03-18 01:33:37.950 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29725 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29724 (-130.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 29715 (-130.4 uncal um), Max = 29734 (-130.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 01:33:37.950 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29725, posNoise = 9, negNoise = 10
17-03-18 01:33:37.950 -07 000000610 INF: Z Motor: After move to -0.131275, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:37.950 -07 000000610 INF: Z Motor: Settle wait time = 1432 ms, measure time = 103 ms (allowed 150 ms), total time = 1535 ms
17-03-18 01:33:37.950 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 01:33:38.000 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-18 01:33:38.000 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:33:38.000 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.131283057924979. ----------
17-03-18 01:33:38.000 -07 000000610 INF: Cycle	88	Tile	10	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:33:38.000 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28500, sync = True, waitForSettling = True)
17-03-18 01:33:38.000 -07 000000610 INF: Z Motor: Moving to -0.130465 mm, started at -0.131283 mm, distance = 0.82 um
17-03-18 01:33:38.000 -07 000000610 INF: FPGA: Xmit ZDACW 28500\n [Z Motor]
17-03-18 01:33:38.000 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 01:33:38.010 -07 000000610 INF: FPGA: 'ZDACW 28500' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:33:38.010 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:38.010 -07 000000611 INF: FPGA: Recv ZDACR 28500
17-03-18 01:33:38.020 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:38.020 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:33:38.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:38.170 -07 000000611 INF: FPGA: Recv ZSGSRD 29595
17-03-18 01:33:38.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:38.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:38.180 -07 000000591 INF: FPGA: Recv ZSGSRD 29598
17-03-18 01:33:38.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:38.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:38.190 -07 000000591 INF: FPGA: Recv ZSGSRD 29604
17-03-18 01:33:38.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:38.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:38.200 -07 000000591 INF: FPGA: Recv ZSGSRD 29599
17-03-18 01:33:38.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:38.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:38.210 -07 000000467 INF: FPGA: Recv ZSGSRD 29599
17-03-18 01:33:38.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:38.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:38.220 -07 000000611 INF: FPGA: Recv ZSGSRD 29602
17-03-18 01:33:38.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:38.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:38.230 -07 000000585 INF: FPGA: Recv ZSGSRD 29597
17-03-18 01:33:38.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:38.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:38.240 -07 000000585 INF: FPGA: Recv ZSGSRD 29600
17-03-18 01:33:38.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:38.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:38.250 -07 000000467 INF: FPGA: Recv ZSGSRD 29596
17-03-18 01:33:38.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:38.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:38.260 -07 000000611 INF: FPGA: Recv ZSGSRD 29597
17-03-18 01:33:38.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:38.270 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:38.270 -07 000000591 INF: FPGA: Recv ZPIEZORD 25042
17-03-18 01:33:38.280 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:38.280 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.349 V. Piezo Error = -10.0 V.
17-03-18 01:33:38.280 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29599 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29598 (-129.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29595 (-129.7 uncal um), Max = 29604 (-129.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:33:38.280 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29599, posNoise = 5, negNoise = 4
17-03-18 01:33:38.280 -07 000000610 INF: Z Motor: After move to -0.130465, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:38.280 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 01:33:38.280 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:33:38.280 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:33:38.280 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:33:38.280 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:33:38.280 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:33:38.280 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:33:38.280 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:33:38.280 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:33:38.280 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:33:38.280 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:33:38.280 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:33:38.280 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:33:38.290 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:33:38.290 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:33:38.290 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:33:38.290 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:33:38.300 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:33:38.300 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:33:38.300 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:33:38.300 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:33:38.300 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28677 150\n [Camera]
17-03-18 01:33:38.500 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:33:38.890 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:33:38.890 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:33:38.900 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:33:38.900 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:33:38.900 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:33:38.900 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:33:38.900 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:33:38.900 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:33:38.900 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:33:38.900 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:33:39.090 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28677 776
17-03-18 01:33:39.240 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:33:39.280 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 01:33:39.280 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 01:33:39.280 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:39.280 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 01:33:39.280 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 01:33:39.280 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:39.280 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:33:39.280 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 01:33:39.280 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:33:39.290 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 01:33:39.430 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:33:39.430 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:33:39.430 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:33:39.430 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:33:39.430 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 01:33:39.430 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:33:39.430 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:33:39.430 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:33:39.430 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:33:39.430 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 01:33:39.620 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:33:39.620 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:33:39.620 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28677 150' command took 2 ms to send, 1302 ms to get response, and 1312 ms overall
17-03-18 01:33:39.620 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:33:39.620 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.130473607195118. ------
17-03-18 01:33:39.620 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:33:39.630 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13683 mm
17-03-18 01:33:39.630 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:33:39.630 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:33:39.630 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 01:33:39.630 -07 000000590 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 01:33:39.630 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 29890, sync = True, waitForSettling = False)
17-03-18 01:33:39.630 -07 000000585 INF: Z Motor: Moving to -0.136828 mm, started at -0.130474 mm, distance = -6.35 um
17-03-18 01:33:39.640 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 3 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:33:39.640 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:39.640 -07 000000611 INF: FPGA: Recv YRDPOS 137978
17-03-18 01:33:39.650 -07 000000585 INF: FPGA: Xmit ZDACW 29890\n [Z Motor]
17-03-18 01:33:39.650 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:33:39.650 -07 000000590 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:39.650 -07 000000590 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:33:39.650 -07 000000590 INF: Y Motor: Moving 1345 steps-23
17-03-18 01:33:39.650 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 01:33:39.660 -07 000000585 INF: FPGA: 'ZDACW 29890' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:33:39.660 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:33:39.670 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:33:39.680 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:39.680 -07 000000576 INF: FPGA: Recv ZDACR 29890
17-03-18 01:33:39.690 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:33:39.690 -07 000000585 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 01:33:39.810 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 01:33:39.810 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 01:33:39.810 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:39.810 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 01:33:39.810 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 01:33:39.810 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:39.810 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:33:39.810 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 01:33:39.810 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:33:39.820 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 01:33:39.860 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:33:39.860 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 01:33:40.050 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 01:33:40.050 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-18 01:33:40.090 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:40.090 -07 000000467 INF: FPGA: Recv YRDPOS 139684
17-03-18 01:33:40.100 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:33:40.100 -07 000000590 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:40.100 -07 000000590 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 01:33:40.100 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.841 mm, average velocity = 2.101 mm/sec
17-03-18 01:33:40.360 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.023489,
17-03-18 01:33:41.050 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:41.050 -07 000000512 INF: FPGA: Recv YRDPOS 139685
17-03-18 01:33:41.060 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:41.060 -07 000000590 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:41.080 -07 000000590 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:33:41.080 -07 000000590 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:33:41.080 -07 000000590 INF: Y Motor: Moved to 68.2056 after 1450 ms (table move)
17-03-18 01:33:41.080 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136828 mm (DAC = 29890)
17-03-18 01:33:41.080 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:41.090 -07 000000591 INF: FPGA: Recv ZSGSRD 30592
17-03-18 01:33:41.090 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 01:33:41.090 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:41.090 -07 000000591 INF: FPGA: Recv ZSGSRD 30592
17-03-18 01:33:41.100 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:33:41.100 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:41.100 -07 000000501 INF: FPGA: Recv ZSGSRD 30583
17-03-18 01:33:41.110 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:41.110 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:41.110 -07 000000611 INF: FPGA: Recv ZSGSRD 30583
17-03-18 01:33:41.120 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:41.120 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:41.120 -07 000000502 INF: FPGA: Recv ZSGSRD 30589
17-03-18 01:33:41.130 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:41.130 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:41.130 -07 000000611 INF: FPGA: Recv ZSGSRD 30594
17-03-18 01:33:41.140 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:41.140 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:41.140 -07 000000576 INF: FPGA: Recv ZSGSRD 30591
17-03-18 01:33:41.150 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:41.150 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:41.150 -07 000000590 INF: FPGA: Recv ZSGSRD 30595
17-03-18 01:33:41.160 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:41.160 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:41.160 -07 000000590 INF: FPGA: Recv ZSGSRD 30592
17-03-18 01:33:41.170 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:41.170 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:41.170 -07 000000590 INF: FPGA: Recv ZSGSRD 30588
17-03-18 01:33:41.180 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:41.180 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:41.180 -07 000000590 INF: FPGA: Recv ZPIEZORD 26377
17-03-18 01:33:41.190 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:41.190 -07 000000424 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.561 V. Piezo Error = -9.3 V.
17-03-18 01:33:41.190 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30590 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30592 (-136.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30583 (-136.0 uncal um), Max = 30595 (-136.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:33:41.190 -07 000000424 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30590, posNoise = 5, negNoise = 7
17-03-18 01:33:41.190 -07 000000424 INF: Z Motor: After move to -0.136828, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:41.190 -07 000000424 INF: Z Motor: Settle wait time = 1453 ms, measure time = 101 ms (allowed 150 ms), total time = 1554 ms
17-03-18 01:33:41.190 -07 000000424 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 01:33:41.240 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 01:33:41.240 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:33:41.240 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:33:41.240 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:33:41.240 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:33:41.240 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:33:41.250 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:33:41.250 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:33:41.250 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:33:41.250 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:33:41.250 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:33:41.250 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:33:41.260 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:33:41.260 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:33:41.270 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:33:41.310 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:33:41.610 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:33:41.610 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:33:41.610 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:33:41.620 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-18 01:33:41.650 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:33:41.650 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 01:33:41.650 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 01:33:41.730 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 01:33:41.730 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:41.730 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:33:41.730 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 01:33:41.750 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:33:41.750 -07 000000424 INF: Autofocus start
17-03-18 01:33:41.750 -07 000000424 INF: MeasureProfile start
17-03-18 01:33:41.760 -07 000000424 INF: MeasureProfile done
17-03-18 01:33:41.760 -07 000000424 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:33:41.760 -07 000000424 INF: Autofocus finished
17-03-18 01:33:41.760 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:33:41.760 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 9 ms to get response, and 16 ms overall
17-03-18 01:33:41.760 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:33:41.970 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:33:41.970 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 01:33:41.970 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.136840001427603. ----------
17-03-18 01:33:41.970 -07 000000610 INF: Cycle	88	Tile	11	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:33:41.980 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28397, sync = True, waitForSettling = True)
17-03-18 01:33:41.980 -07 000000610 INF: Z Motor: Moving to -0.129993 mm, started at -0.136840 mm, distance = 6.85 um
17-03-18 01:33:41.980 -07 000000610 INF: FPGA: Xmit ZDACW 28397\n [Z Motor]
17-03-18 01:33:41.980 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 01:33:41.990 -07 000000610 INF: FPGA: 'ZDACW 28397' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:41.990 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:41.990 -07 000000590 INF: FPGA: Recv ZDACR 28397
17-03-18 01:33:42.000 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:42.000 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:33:42.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:42.150 -07 000000424 INF: FPGA: Recv ZSGSRD 29524
17-03-18 01:33:42.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:42.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:42.160 -07 000000424 INF: FPGA: Recv ZSGSRD 29530
17-03-18 01:33:42.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:42.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:42.170 -07 000000590 INF: FPGA: Recv ZSGSRD 29523
17-03-18 01:33:42.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:42.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:42.180 -07 000000590 INF: FPGA: Recv ZSGSRD 29524
17-03-18 01:33:42.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:42.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:42.190 -07 000000424 INF: FPGA: Recv ZSGSRD 29527
17-03-18 01:33:42.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:42.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:42.200 -07 000000590 INF: FPGA: Recv ZSGSRD 29518
17-03-18 01:33:42.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:42.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:42.210 -07 000000424 INF: FPGA: Recv ZSGSRD 29527
17-03-18 01:33:42.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:42.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:42.220 -07 000000424 INF: FPGA: Recv ZSGSRD 29523
17-03-18 01:33:42.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:42.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:42.230 -07 000000487 INF: FPGA: Recv ZSGSRD 29533
17-03-18 01:33:42.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:42.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:42.240 -07 000000487 INF: FPGA: Recv ZSGSRD 29525
17-03-18 01:33:42.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:42.250 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:42.250 -07 000000569 INF: FPGA: Recv ZPIEZORD 24994
17-03-18 01:33:42.260 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:42.260 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.333 V. Piezo Error = -9.9 V.
17-03-18 01:33:42.260 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29525 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29524 (-129.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29518 (-129.2 uncal um), Max = 29533 (-129.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:33:42.260 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29525, posNoise = 8, negNoise = 7
17-03-18 01:33:42.260 -07 000000610 INF: Z Motor: After move to -0.129993, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:42.260 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:33:42.260 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:33:42.260 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:33:42.260 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:33:42.260 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:33:42.260 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:33:42.260 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:33:42.260 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:33:42.260 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:33:42.260 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:33:42.260 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:33:42.260 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:33:42.260 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:33:42.260 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:33:42.260 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:33:42.260 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:33:42.270 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:33:42.270 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:33:42.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:33:42.270 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:33:42.270 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:33:42.280 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:33:42.280 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:33:42.280 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28574 150\n [Camera]
17-03-18 01:33:42.480 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:33:42.880 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:33:42.880 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:33:42.880 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:33:42.880 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:33:42.880 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 01:33:42.880 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:33:42.880 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:33:42.880 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:33:42.880 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:33:42.880 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 01:33:43.070 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28574 775
17-03-18 01:33:43.210 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:33:43.250 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 01:33:43.260 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 01:33:43.260 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:43.260 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:33:43.260 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 01:33:43.270 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 01:33:43.270 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 01:33:43.270 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:43.270 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:33:43.270 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:33:43.400 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:33:43.400 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:33:43.400 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:33:43.400 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:33:43.400 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 01:33:43.410 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:33:43.410 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:33:43.410 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:33:43.410 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:33:43.410 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 01:33:43.590 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:33:43.600 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:33:43.600 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28574 150' command took 2 ms to send, 1310 ms to get response, and 1316 ms overall
17-03-18 01:33:43.600 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.130616
17-03-18 01:33:43.600 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13062 mm
17-03-18 01:33:43.600 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:33:43.600 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 01:33:43.600 -07 000000590 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-18 01:33:43.600 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:43.600 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 28533, sync = True, waitForSettling = False)
17-03-18 01:33:43.600 -07 000000424 INF: Z Motor: Moving to -0.130616 mm, started at -0.129998 mm, distance = -0.62 um
17-03-18 01:33:43.600 -07 000000474 INF: FPGA: Recv YRDPOS 139685
17-03-18 01:33:43.610 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:33:43.610 -07 000000590 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:43.610 -07 000000590 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:33:43.610 -07 000000590 INF: Y Motor: Moving 1339 steps-15
17-03-18 01:33:43.610 -07 000000424 INF: FPGA: Xmit ZDACW 28533\n [Z Motor]
17-03-18 01:33:43.610 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 01:33:43.620 -07 000000424 INF: FPGA: 'ZDACW 28533' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:33:43.620 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:33:43.630 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:43.630 -07 000000561 INF: FPGA: Recv ZDACR 28533
17-03-18 01:33:43.640 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:33:43.640 -07 000000424 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-18 01:33:43.810 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 01:33:43.810 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:33:43.810 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:43.810 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 01:33:43.810 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:33:43.810 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:43.810 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:33:43.820 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:33:43.820 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 01:33:43.820 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 01:33:43.990 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 01:33:43.990 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 01:33:44.040 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:44.040 -07 000000487 INF: FPGA: Recv YRDPOS 141368
17-03-18 01:33:44.050 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:33:44.050 -07 000000590 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:44.050 -07 000000590 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 01:33:44.050 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.837 mm, average velocity = 2.157 mm/sec
17-03-18 01:33:45.000 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:45.000 -07 000000561 INF: FPGA: Recv YRDPOS 141368
17-03-18 01:33:45.010 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:45.010 -07 000000590 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:45.030 -07 000000590 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:33:45.030 -07 000000590 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:33:45.030 -07 000000590 INF: Y Motor: Moved to 69.0273 after 1430 ms (table move)
17-03-18 01:33:45.040 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130616 mm (DAC = 28533)
17-03-18 01:33:45.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:45.040 -07 000000424 INF: FPGA: Recv ZSGSRD 29625
17-03-18 01:33:45.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:33:45.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:45.710 -07 000000561 INF: FPGA: Recv ZSGSRD 29629
17-03-18 01:33:45.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 651 ms to get response, and 660 ms overall
17-03-18 01:33:45.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:45.710 -07 000000626 INF: FPGA: Recv ZSGSRD 29623
17-03-18 01:33:45.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:33:45.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:45.720 -07 000000424 INF: FPGA: Recv ZSGSRD 29626
17-03-18 01:33:45.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:45.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:45.730 -07 000000561 INF: FPGA: Recv ZSGSRD 29621
17-03-18 01:33:45.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:45.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:45.740 -07 000000590 INF: FPGA: Recv ZSGSRD 29623
17-03-18 01:33:45.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:45.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:45.750 -07 000000626 INF: FPGA: Recv ZSGSRD 29624
17-03-18 01:33:45.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:45.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:45.760 -07 000000625 INF: FPGA: Recv ZSGSRD 29618
17-03-18 01:33:45.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:45.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:45.770 -07 000000561 INF: FPGA: Recv ZSGSRD 29621
17-03-18 01:33:45.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:45.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:45.780 -07 000000569 INF: FPGA: Recv ZSGSRD 29624
17-03-18 01:33:45.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:45.790 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:45.790 -07 000000626 INF: FPGA: Recv ZPIEZORD 25153
17-03-18 01:33:45.800 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:45.800 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.354 V. Piezo Error = -9.8 V.
17-03-18 01:33:45.800 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29623 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29624 (-129.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29618 (-129.8 uncal um), Max = 29629 (-129.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:33:45.800 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29623, posNoise = 6, negNoise = 5
17-03-18 01:33:45.800 -07 000000610 INF: Z Motor: After move to -0.130616, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:45.800 -07 000000610 INF: Z Motor: Settle wait time = 1434 ms, measure time = 759 ms (allowed 150 ms), total time = 2193 ms
17-03-18 01:33:45.800 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 759 ms, longer than max expected time of 150 ms
17-03-18 01:33:45.800 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2198 ms
17-03-18 01:33:45.800 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:33:45.800 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.13062778828652. ----------
17-03-18 01:33:45.800 -07 000000610 INF: Cycle	88	Tile	12	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:33:45.800 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28356, sync = True, waitForSettling = True)
17-03-18 01:33:45.800 -07 000000610 INF: Z Motor: Moving to -0.129805 mm, started at -0.130628 mm, distance = 0.82 um
17-03-18 01:33:45.800 -07 000000610 INF: FPGA: Xmit ZDACW 28356\n [Z Motor]
17-03-18 01:33:45.810 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:33:45.810 -07 000000610 INF: FPGA: 'ZDACW 28356' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:33:45.810 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:45.810 -07 000000474 INF: FPGA: Recv ZDACR 28356
17-03-18 01:33:45.820 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:45.820 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:33:45.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:45.970 -07 000000561 INF: FPGA: Recv ZSGSRD 29493
17-03-18 01:33:45.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:45.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:45.980 -07 000000474 INF: FPGA: Recv ZSGSRD 29497
17-03-18 01:33:45.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:45.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:45.990 -07 000000625 INF: FPGA: Recv ZSGSRD 29494
17-03-18 01:33:46.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:46.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:46.000 -07 000000626 INF: FPGA: Recv ZSGSRD 29500
17-03-18 01:33:46.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:46.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:46.020 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 3.988112,
17-03-18 01:33:46.020 -07 000000626 INF: FPGA: Recv ZSGSRD 29502
17-03-18 01:33:46.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:33:46.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:46.050 -07 000000569 INF: FPGA: Recv ZSGSRD 29492
17-03-18 01:33:46.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:33:46.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:46.060 -07 000000626 INF: FPGA: Recv ZSGSRD 29498
17-03-18 01:33:46.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:46.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:46.080 -07 000000474 INF: FPGA: Recv ZSGSRD 29492
17-03-18 01:33:46.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:33:46.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:46.090 -07 000000561 INF: FPGA: Recv ZSGSRD 29491
17-03-18 01:33:46.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:46.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:46.110 -07 000000626 INF: FPGA: Recv ZSGSRD 29500
17-03-18 01:33:46.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:33:46.120 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:46.120 -07 000000625 INF: FPGA: Recv ZPIEZORD 24983
17-03-18 01:33:46.130 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:46.130 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.327 V. Piezo Error = -9.9 V.
17-03-18 01:33:46.130 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29496 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29496 (-129.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29491 (-129.0 uncal um), Max = 29502 (-129.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:33:46.130 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29496, posNoise = 6, negNoise = 5
17-03-18 01:33:46.130 -07 000000610 INF: Z Motor: After move to -0.129805, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:46.130 -07 000000610 INF: Z Motor: MoveAbsStepped took 323 ms)
17-03-18 01:33:46.130 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:33:46.130 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:33:46.130 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:33:46.130 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:33:46.130 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:33:46.130 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:33:46.130 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:33:46.130 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:33:46.130 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:33:46.130 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:33:46.130 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:33:46.130 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:33:46.140 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:33:46.140 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:33:46.140 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:33:46.140 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:33:46.140 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:33:46.140 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:33:46.150 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:33:46.150 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:33:46.150 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28533 150\n [Camera]
17-03-18 01:33:46.350 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:33:46.740 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:33:46.740 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:33:46.740 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:33:46.740 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:33:46.740 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 01:33:46.740 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:33:46.740 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:33:46.740 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:33:46.740 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:33:46.740 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 01:33:46.930 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28533 775
17-03-18 01:33:47.080 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:33:47.130 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 01:33:47.130 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 01:33:47.130 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:47.130 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 01:33:47.130 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 01:33:47.130 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:47.130 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:33:47.130 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:33:47.130 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:33:47.140 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:33:47.270 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:33:47.270 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:33:47.270 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:33:47.270 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:33:47.270 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 01:33:47.270 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:33:47.270 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:33:47.280 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:33:47.280 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:33:47.280 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 01:33:47.280 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:33:47.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:33:47.460 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:33:47.460 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:33:47.460 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28533 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-18 01:33:47.460 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.130256
17-03-18 01:33:47.460 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13026 mm
17-03-18 01:33:47.460 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:33:47.470 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 01:33:47.470 -07 000000625 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 01:33:47.470 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:47.470 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 28454, sync = True, waitForSettling = False)
17-03-18 01:33:47.470 -07 000000626 INF: Z Motor: Moving to -0.130254 mm, started at -0.129812 mm, distance = -0.44 um
17-03-18 01:33:47.470 -07 000000569 INF: FPGA: Recv YRDPOS 141368
17-03-18 01:33:47.480 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:47.480 -07 000000625 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:47.480 -07 000000625 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:33:47.480 -07 000000625 INF: Y Motor: Moving 1352 steps-31
17-03-18 01:33:47.480 -07 000000626 INF: FPGA: Xmit ZDACW 28454\n [Z Motor]
17-03-18 01:33:47.480 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 01:33:47.490 -07 000000626 INF: FPGA: 'ZDACW 28454' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:33:47.490 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:47.490 -07 000000569 INF: FPGA: Recv ZDACR 28454
17-03-18 01:33:47.500 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:33:47.500 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:47.500 -07 000000626 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-18 01:33:47.670 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 01:33:47.670 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:33:47.670 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:47.680 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:33:47.680 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:33:47.680 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:47.680 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:33:47.680 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 01:33:47.680 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:33:47.690 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 01:33:47.870 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 01:33:47.880 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-18 01:33:47.920 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:47.920 -07 000000474 INF: FPGA: Recv YRDPOS 143080
17-03-18 01:33:47.930 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:33:47.930 -07 000000625 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:47.930 -07 000000625 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 01:33:47.930 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.845 mm, average velocity = 2.118 mm/sec
17-03-18 01:33:48.880 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:48.880 -07 000000569 INF: FPGA: Recv YRDPOS 143080
17-03-18 01:33:48.890 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:48.890 -07 000000625 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:48.910 -07 000000625 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:33:48.910 -07 000000625 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:33:48.910 -07 000000625 INF: Y Motor: Moved to 69.8633 after 1446 ms (table move)
17-03-18 01:33:48.910 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130254 mm (DAC = 28454)
17-03-18 01:33:48.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:48.920 -07 000000569 INF: FPGA: Recv ZSGSRD 29568
17-03-18 01:33:48.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:48.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:48.930 -07 000000590 INF: FPGA: Recv ZSGSRD 29569
17-03-18 01:33:48.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:48.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:48.940 -07 000000474 INF: FPGA: Recv ZSGSRD 29570
17-03-18 01:33:48.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:48.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:48.950 -07 000000561 INF: FPGA: Recv ZSGSRD 29568
17-03-18 01:33:48.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:48.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:48.960 -07 000000629 INF: FPGA: Recv ZSGSRD 29567
17-03-18 01:33:48.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:48.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:48.970 -07 000000625 INF: FPGA: Recv ZSGSRD 29573
17-03-18 01:33:48.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:48.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:48.980 -07 000000474 INF: FPGA: Recv ZSGSRD 29565
17-03-18 01:33:48.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:48.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:48.990 -07 000000625 INF: FPGA: Recv ZSGSRD 29559
17-03-18 01:33:49.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:49.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:49.000 -07 000000474 INF: FPGA: Recv ZSGSRD 29558
17-03-18 01:33:49.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:49.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:49.010 -07 000000625 INF: FPGA: Recv ZSGSRD 29573
17-03-18 01:33:49.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:49.020 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:49.020 -07 000000590 INF: FPGA: Recv ZPIEZORD 25067
17-03-18 01:33:49.030 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:49.030 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.342 V. Piezo Error = -9.9 V.
17-03-18 01:33:49.030 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29567 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29568 (-129.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29558 (-129.4 uncal um), Max = 29573 (-129.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:33:49.030 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29567, posNoise = 6, negNoise = 9
17-03-18 01:33:49.030 -07 000000610 INF: Z Motor: After move to -0.130254, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:49.030 -07 000000610 INF: Z Motor: Settle wait time = 1448 ms, measure time = 113 ms (allowed 150 ms), total time = 1561 ms
17-03-18 01:33:49.030 -07 000000610 INF: Z Motor: Waiting extra 37 ms after reading position to reach expected total of 150 ms
17-03-18 01:33:49.070 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-18 01:33:49.070 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:33:49.070 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.130268032406581. ----------
17-03-18 01:33:49.070 -07 000000610 INF: Cycle	88	Tile	13	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:33:49.070 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28278, sync = True, waitForSettling = True)
17-03-18 01:33:49.070 -07 000000610 INF: Z Motor: Moving to -0.129448 mm, started at -0.130268 mm, distance = 0.82 um
17-03-18 01:33:49.070 -07 000000610 INF: FPGA: Xmit ZDACW 28278\n [Z Motor]
17-03-18 01:33:49.080 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:33:49.080 -07 000000610 INF: FPGA: 'ZDACW 28278' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:33:49.080 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:49.080 -07 000000569 INF: FPGA: Recv ZDACR 28278
17-03-18 01:33:49.090 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:49.090 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:33:49.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:49.240 -07 000000629 INF: FPGA: Recv ZSGSRD 29438
17-03-18 01:33:49.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:49.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:49.250 -07 000000626 INF: FPGA: Recv ZSGSRD 29445
17-03-18 01:33:49.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:49.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:49.260 -07 000000629 INF: FPGA: Recv ZSGSRD 29443
17-03-18 01:33:49.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:49.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:49.270 -07 000000474 INF: FPGA: Recv ZSGSRD 29435
17-03-18 01:33:49.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:49.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:49.280 -07 000000629 INF: FPGA: Recv ZSGSRD 29443
17-03-18 01:33:49.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:49.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:49.290 -07 000000569 INF: FPGA: Recv ZSGSRD 29440
17-03-18 01:33:49.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:49.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:49.300 -07 000000629 INF: FPGA: Recv ZSGSRD 29438
17-03-18 01:33:49.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:49.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:49.310 -07 000000569 INF: FPGA: Recv ZSGSRD 29441
17-03-18 01:33:49.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:49.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:49.320 -07 000000629 INF: FPGA: Recv ZSGSRD 29433
17-03-18 01:33:49.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:49.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:49.330 -07 000000569 INF: FPGA: Recv ZSGSRD 29442
17-03-18 01:33:49.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:49.340 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:49.340 -07 000000629 INF: FPGA: Recv ZPIEZORD 24901
17-03-18 01:33:49.350 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:49.350 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.315 V. Piezo Error = -10.0 V.
17-03-18 01:33:49.350 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29440 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29440 (-128.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29433 (-128.6 uncal um), Max = 29445 (-128.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:33:49.350 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29440, posNoise = 5, negNoise = 7
17-03-18 01:33:49.350 -07 000000610 INF: Z Motor: After move to -0.129448, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:49.350 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 01:33:49.350 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:33:49.350 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:33:49.350 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:33:49.350 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:33:49.350 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:33:49.350 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:33:49.350 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:33:49.350 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:33:49.350 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:33:49.350 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:33:49.350 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:33:49.350 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:33:49.360 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:33:49.360 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:33:49.360 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:33:49.360 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:33:49.370 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:33:49.370 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:33:49.370 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:33:49.370 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:33:49.370 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28454 150\n [Camera]
17-03-18 01:33:49.580 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 01:33:49.960 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:33:49.970 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:33:49.970 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:33:49.970 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:33:49.970 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:33:49.970 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:33:49.970 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 01:33:49.970 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:33:49.970 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:33:49.970 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-18 01:33:50.160 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28454 775
17-03-18 01:33:50.310 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:33:50.350 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 01:33:50.350 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 01:33:50.350 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:50.350 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 01:33:50.350 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 01:33:50.350 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:50.350 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:33:50.350 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:33:50.350 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 01:33:50.360 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 01:33:50.500 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:33:50.500 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:33:50.500 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:33:50.500 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:33:50.500 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) start.
17-03-18 01:33:50.500 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:33:50.500 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:33:50.500 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:33:50.640 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:33:50.640 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 01:33:50.690 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 01:33:50.690 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:33:50.690 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28454 150' command took 2 ms to send, 1306 ms to get response, and 1316 ms overall
17-03-18 01:33:50.690 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.129364
17-03-18 01:33:50.690 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.12936 mm
17-03-18 01:33:50.690 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:33:50.700 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 01:33:50.700 -07 000000502 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-18 01:33:50.700 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:50.700 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 28260, sync = True, waitForSettling = False)
17-03-18 01:33:50.700 -07 000000590 INF: Z Motor: Moving to -0.129366 mm, started at -0.129452 mm, distance = 0.09 um
17-03-18 01:33:50.700 -07 000000611 INF: FPGA: Recv YRDPOS 143080
17-03-18 01:33:50.710 -07 000000590 INF: FPGA: Xmit ZDACW 28260\n [Z Motor]
17-03-18 01:33:50.710 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:50.710 -07 000000502 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:50.710 -07 000000502 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:33:50.710 -07 000000502 INF: Y Motor: Moving 1343 steps-19
17-03-18 01:33:50.710 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 01:33:50.720 -07 000000590 INF: FPGA: 'ZDACW 28260' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 01:33:50.720 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:33:50.730 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:50.730 -07 000000569 INF: FPGA: Recv ZDACR 28260
17-03-18 01:33:50.740 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:33:50.740 -07 000000590 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 01:33:50.900 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:33:50.900 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:33:50.900 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:50.900 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:33:50.900 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:33:51.030 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 01:33:51.030 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 01:33:51.030 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:51.030 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:33:51.030 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 535 ms.
17-03-18 01:33:51.090 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 01:33:51.090 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 01:33:51.140 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:51.140 -07 000000626 INF: FPGA: Recv YRDPOS 144770
17-03-18 01:33:51.150 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:33:51.150 -07 000000502 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:51.150 -07 000000502 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 01:33:51.150 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.169 mm/sec
17-03-18 01:33:51.430 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.049392,
17-03-18 01:33:52.100 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:52.100 -07 000000629 INF: FPGA: Recv YRDPOS 144770
17-03-18 01:33:52.110 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:52.110 -07 000000502 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:52.130 -07 000000502 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:33:52.130 -07 000000502 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:33:52.130 -07 000000502 INF: Y Motor: Moved to 70.6885 after 1435 ms (table move)
17-03-18 01:33:52.130 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129366 mm (DAC = 28260)
17-03-18 01:33:52.130 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:52.140 -07 000000626 INF: FPGA: Recv ZSGSRD 29426
17-03-18 01:33:52.140 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 01:33:52.140 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:52.140 -07 000000629 INF: FPGA: Recv ZSGSRD 29424
17-03-18 01:33:52.150 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:33:52.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:52.150 -07 000000629 INF: FPGA: Recv ZSGSRD 29426
17-03-18 01:33:52.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:52.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:52.160 -07 000000626 INF: FPGA: Recv ZSGSRD 29434
17-03-18 01:33:52.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:52.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:52.170 -07 000000502 INF: FPGA: Recv ZSGSRD 29433
17-03-18 01:33:52.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:52.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:52.180 -07 000000502 INF: FPGA: Recv ZSGSRD 29431
17-03-18 01:33:52.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:52.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:52.190 -07 000000502 INF: FPGA: Recv ZSGSRD 29424
17-03-18 01:33:52.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:52.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:52.200 -07 000000626 INF: FPGA: Recv ZSGSRD 29425
17-03-18 01:33:52.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:52.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:52.210 -07 000000502 INF: FPGA: Recv ZSGSRD 29427
17-03-18 01:33:52.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:52.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:52.220 -07 000000626 INF: FPGA: Recv ZSGSRD 29426
17-03-18 01:33:52.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:52.230 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:52.230 -07 000000626 INF: FPGA: Recv ZPIEZORD 24872
17-03-18 01:33:52.240 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:52.240 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.312 V. Piezo Error = -10.0 V.
17-03-18 01:33:52.240 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29428 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29426 (-128.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29424 (-128.6 uncal um), Max = 29434 (-128.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:33:52.240 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29428, posNoise = 6, negNoise = 4
17-03-18 01:33:52.240 -07 000000610 INF: Z Motor: After move to -0.129366, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:52.240 -07 000000610 INF: Z Motor: Settle wait time = 1437 ms, measure time = 101 ms (allowed 150 ms), total time = 1538 ms
17-03-18 01:33:52.240 -07 000000610 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 01:33:52.270 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:33:52.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:33:52.290 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-18 01:33:52.290 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:33:52.290 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.129375066918876. ----------
17-03-18 01:33:52.290 -07 000000610 INF: Cycle	88	Tile	14	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:33:52.290 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28083, sync = True, waitForSettling = True)
17-03-18 01:33:52.290 -07 000000610 INF: Z Motor: Moving to -0.128556 mm, started at -0.129375 mm, distance = 0.82 um
17-03-18 01:33:52.290 -07 000000610 INF: FPGA: Xmit ZDACW 28083\n [Z Motor]
17-03-18 01:33:52.290 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 01:33:52.300 -07 000000610 INF: FPGA: 'ZDACW 28083' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:33:52.300 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:52.300 -07 000000591 INF: FPGA: Recv ZDACR 28083
17-03-18 01:33:52.310 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:52.310 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:33:52.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:52.460 -07 000000501 INF: FPGA: Recv ZSGSRD 29295
17-03-18 01:33:52.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:52.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:52.470 -07 000000629 INF: FPGA: Recv ZSGSRD 29307
17-03-18 01:33:52.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:52.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:52.480 -07 000000501 INF: FPGA: Recv ZSGSRD 29301
17-03-18 01:33:52.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:52.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:52.490 -07 000000629 INF: FPGA: Recv ZSGSRD 29300
17-03-18 01:33:52.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:52.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:52.500 -07 000000501 INF: FPGA: Recv ZSGSRD 29301
17-03-18 01:33:52.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:52.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:52.510 -07 000000629 INF: FPGA: Recv ZSGSRD 29297
17-03-18 01:33:52.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:52.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:52.520 -07 000000502 INF: FPGA: Recv ZSGSRD 29301
17-03-18 01:33:52.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:52.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:52.530 -07 000000629 INF: FPGA: Recv ZSGSRD 29299
17-03-18 01:33:52.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:52.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:52.540 -07 000000501 INF: FPGA: Recv ZSGSRD 29300
17-03-18 01:33:52.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:52.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:52.550 -07 000000591 INF: FPGA: Recv ZSGSRD 29301
17-03-18 01:33:52.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:52.560 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:52.560 -07 000000501 INF: FPGA: Recv ZPIEZORD 24754
17-03-18 01:33:52.570 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:52.570 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.285 V. Piezo Error = -10.0 V.
17-03-18 01:33:52.570 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29300 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29300 (-127.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29295 (-127.7 uncal um), Max = 29307 (-127.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:33:52.570 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29300, posNoise = 7, negNoise = 5
17-03-18 01:33:52.570 -07 000000610 INF: Z Motor: After move to -0.128556, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:52.570 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 01:33:52.570 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:33:52.570 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:33:52.570 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:33:52.570 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:33:52.570 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:33:52.570 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:33:52.570 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:33:52.570 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:33:52.570 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:33:52.570 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:33:52.570 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:33:52.570 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:33:52.580 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:33:52.580 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:33:52.580 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:33:52.580 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:33:52.590 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:33:52.590 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:33:52.590 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:33:52.590 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:33:52.590 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28260 150\n [Camera]
17-03-18 01:33:52.790 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:33:53.180 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:33:53.180 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:33:53.190 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:33:53.190 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:33:53.190 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:33:53.190 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:33:53.190 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:33:53.190 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:33:53.200 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:33:53.200 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:33:53.380 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28260 777
17-03-18 01:33:53.530 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:33:53.570 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 01:33:53.570 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 01:33:53.570 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:53.570 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 01:33:53.570 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 01:33:53.570 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:53.570 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:33:53.570 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 01:33:53.570 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:33:53.580 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 01:33:53.720 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:33:53.720 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:33:53.720 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:33:53.720 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:33:53.720 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:33:53.720 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:33:53.840 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:33:53.840 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 01:33:53.840 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:33:53.840 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 01:33:53.910 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:33:53.910 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:33:53.910 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28260 150' command took 2 ms to send, 1302 ms to get response, and 1312 ms overall
17-03-18 01:33:53.910 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:33:53.910 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.128552767764731. ------
17-03-18 01:33:53.920 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:33:53.920 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13521 mm
17-03-18 01:33:53.920 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:33:53.920 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:33:53.920 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 01:33:53.920 -07 000000629 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 01:33:53.930 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:33:53.930 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:53.930 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 29536, sync = True, waitForSettling = False)
17-03-18 01:33:53.930 -07 000000467 INF: Z Motor: Moving to -0.135207 mm, started at -0.128553 mm, distance = -6.65 um
17-03-18 01:33:53.930 -07 000000502 INF: FPGA: Recv YRDPOS 144770
17-03-18 01:33:53.940 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:33:53.940 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:53.940 -07 000000629 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:53.940 -07 000000629 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:33:53.940 -07 000000629 INF: Y Motor: Moving 1351 steps-29
17-03-18 01:33:53.950 -07 000000467 INF: FPGA: Xmit ZDACW 29536\n [Z Motor]
17-03-18 01:33:53.950 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:33:53.960 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:33:53.960 -07 000000467 INF: FPGA: 'ZDACW 29536' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 01:33:53.970 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:53.970 -07 000000502 INF: FPGA: Recv ZDACR 29536
17-03-18 01:33:53.980 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:33:53.980 -07 000000467 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 01:33:54.140 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:33:54.140 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 01:33:54.220 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 01:33:54.220 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 01:33:54.220 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:54.220 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 01:33:54.220 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 01:33:54.220 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:54.220 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:33:54.220 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:33:54.220 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 505 ms.
17-03-18 01:33:54.230 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-18 01:33:54.340 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 01:33:54.340 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 399 ms overall
17-03-18 01:33:54.380 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:54.380 -07 000000576 INF: FPGA: Recv YRDPOS 146470
17-03-18 01:33:54.390 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:33:54.390 -07 000000629 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:54.390 -07 000000629 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 01:33:54.390 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.844 mm, average velocity = 2.116 mm/sec
17-03-18 01:33:55.340 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:55.340 -07 000000512 INF: FPGA: Recv YRDPOS 146471
17-03-18 01:33:55.350 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:55.350 -07 000000629 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:55.370 -07 000000629 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:33:55.370 -07 000000629 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:33:55.370 -07 000000629 INF: Y Motor: Moved to 71.5190 after 1446 ms (table move)
17-03-18 01:33:55.380 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135207 mm (DAC = 29536)
17-03-18 01:33:55.380 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:55.380 -07 000000467 INF: FPGA: Recv ZSGSRD 30346
17-03-18 01:33:55.390 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:55.390 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:55.390 -07 000000467 INF: FPGA: Recv ZSGSRD 30329
17-03-18 01:33:55.400 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:55.400 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:55.400 -07 000000479 INF: FPGA: Recv ZSGSRD 30329
17-03-18 01:33:55.410 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:55.410 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:55.410 -07 000000501 INF: FPGA: Recv ZSGSRD 30336
17-03-18 01:33:55.420 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:55.420 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:55.420 -07 000000487 INF: FPGA: Recv ZSGSRD 30331
17-03-18 01:33:55.430 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:55.430 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:55.430 -07 000000501 INF: FPGA: Recv ZSGSRD 30334
17-03-18 01:33:55.440 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:55.440 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:55.440 -07 000000479 INF: FPGA: Recv ZSGSRD 30340
17-03-18 01:33:55.450 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:55.450 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:55.450 -07 000000467 INF: FPGA: Recv ZSGSRD 30337
17-03-18 01:33:55.460 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:55.460 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:55.460 -07 000000501 INF: FPGA: Recv ZSGSRD 30340
17-03-18 01:33:55.470 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:55.470 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:55.470 -07 000000479 INF: FPGA: Recv ZSGSRD 30337
17-03-18 01:33:55.480 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:55.480 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:55.480 -07 000000629 INF: FPGA: Recv ZPIEZORD 26096
17-03-18 01:33:55.490 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:55.490 -07 000000585 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.507 V. Piezo Error = -9.3 V.
17-03-18 01:33:55.490 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.2 um, Read 10 ADC samples: Avg = 30336 (-134.4 uncal um), Error = 0.8 uncal um, Median = 30336 (-134.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30329 (-134.4 uncal um), Max = 30346 (-134.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:33:55.490 -07 000000585 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30336, posNoise = 10, negNoise = 7
17-03-18 01:33:55.490 -07 000000585 INF: Z Motor: After move to -0.135207, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:55.490 -07 000000585 INF: Z Motor: Settle wait time = 1448 ms, measure time = 111 ms (allowed 150 ms), total time = 1559 ms
17-03-18 01:33:55.490 -07 000000585 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:33:55.530 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-18 01:33:55.530 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:33:55.530 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:33:55.530 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:33:55.530 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:33:55.530 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:33:55.530 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:33:55.530 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:33:55.530 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:33:55.530 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:33:55.540 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:33:55.540 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:33:55.550 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:33:55.550 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 01:33:55.550 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:33:55.600 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:33:55.890 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:33:55.900 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:33:55.900 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:33:55.900 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-18 01:33:55.930 -07 000000576 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:33:55.940 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 01:33:55.940 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 01:33:56.020 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:33:56.020 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:56.030 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:33:56.030 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:33:56.040 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:33:56.040 -07 000000467 INF: Autofocus start
17-03-18 01:33:56.040 -07 000000467 INF: MeasureProfile start
17-03-18 01:33:56.040 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:33:56.050 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:33:56.050 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:33:56.050 -07 000000467 INF: MeasureProfile done
17-03-18 01:33:56.050 -07 000000467 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:33:56.050 -07 000000467 INF: Autofocus finished
17-03-18 01:33:56.250 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:33:56.250 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:33:56.250 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.135208251543595. ----------
17-03-18 01:33:56.250 -07 000000610 INF: Cycle	88	Tile	15	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:33:56.260 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28060, sync = True, waitForSettling = True)
17-03-18 01:33:56.260 -07 000000610 INF: Z Motor: Moving to -0.128450 mm, started at -0.135208 mm, distance = 6.76 um
17-03-18 01:33:56.260 -07 000000610 INF: FPGA: Xmit ZDACW 28060\n [Z Motor]
17-03-18 01:33:56.260 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 01:33:56.270 -07 000000610 INF: FPGA: 'ZDACW 28060' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:33:56.270 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:56.270 -07 000000629 INF: FPGA: Recv ZDACR 28060
17-03-18 01:33:56.280 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:56.280 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:33:56.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:56.430 -07 000000512 INF: FPGA: Recv ZSGSRD 29283
17-03-18 01:33:56.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:56.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:56.440 -07 000000467 INF: FPGA: Recv ZSGSRD 29285
17-03-18 01:33:56.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:56.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:56.450 -07 000000501 INF: FPGA: Recv ZSGSRD 29288
17-03-18 01:33:56.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:56.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:56.460 -07 000000479 INF: FPGA: Recv ZSGSRD 29285
17-03-18 01:33:56.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:56.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:56.480 -07 000000512 INF: FPGA: Recv ZSGSRD 29289
17-03-18 01:33:56.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:33:56.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:56.490 -07 000000576 INF: FPGA: Recv ZSGSRD 29284
17-03-18 01:33:56.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:56.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:56.500 -07 000000501 INF: FPGA: Recv ZSGSRD 29284
17-03-18 01:33:56.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:56.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:56.510 -07 000000487 INF: FPGA: Recv ZSGSRD 29283
17-03-18 01:33:56.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:56.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:56.520 -07 000000576 INF: FPGA: Recv ZSGSRD 29283
17-03-18 01:33:56.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:56.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:56.530 -07 000000424 INF: FPGA: Recv ZSGSRD 29293
17-03-18 01:33:56.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:56.540 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:56.540 -07 000000424 INF: FPGA: Recv ZPIEZORD 24725
17-03-18 01:33:56.550 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:56.550 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.282 V. Piezo Error = -10.0 V.
17-03-18 01:33:56.550 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29286 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29284 (-127.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29283 (-127.7 uncal um), Max = 29293 (-127.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:33:56.550 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29286, posNoise = 7, negNoise = 3
17-03-18 01:33:56.550 -07 000000610 INF: Z Motor: After move to -0.128450, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:56.550 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 01:33:56.550 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:33:56.550 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:33:56.550 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:33:56.550 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:33:56.550 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:33:56.550 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:33:56.550 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:33:56.550 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:33:56.550 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:33:56.550 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:33:56.550 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:33:56.550 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:33:56.560 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:33:56.560 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:33:56.560 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:33:56.560 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:33:56.570 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:33:56.570 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:33:56.570 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:33:56.570 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:33:56.570 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28237 150\n [Camera]
17-03-18 01:33:56.770 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:33:56.790 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.02213,
17-03-18 01:33:57.160 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:33:57.170 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:33:57.170 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:33:57.170 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:33:57.170 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:33:57.170 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:33:57.180 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:33:57.180 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 01:33:57.180 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:33:57.180 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 01:33:57.270 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:33:57.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:33:57.360 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28237 775
17-03-18 01:33:57.510 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:33:57.550 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 01:33:57.550 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 01:33:57.550 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:57.550 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 01:33:57.550 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 01:33:57.550 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:57.550 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:33:57.560 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:33:57.560 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 01:33:57.560 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 01:33:57.690 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:33:57.700 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:33:57.700 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:33:57.700 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:33:57.700 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:33:57.700 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:33:57.700 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:33:57.700 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 01:33:57.710 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:33:57.710 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 01:33:57.890 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:33:57.890 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:33:57.890 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28237 150' command took 2 ms to send, 1301 ms to get response, and 1312 ms overall
17-03-18 01:33:57.890 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.128815
17-03-18 01:33:57.890 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.12881 mm
17-03-18 01:33:57.890 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:33:57.890 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 01:33:57.890 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 28140, sync = True, waitForSettling = False)
17-03-18 01:33:57.890 -07 000000576 INF: Z Motor: Moving to -0.128817 mm, started at -0.128463 mm, distance = -0.35 um
17-03-18 01:33:57.890 -07 000000576 INF: FPGA: Xmit ZDACW 28140\n [Z Motor]
17-03-18 01:33:57.890 -07 000000512 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 01:33:57.900 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:57.900 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:33:57.900 -07 000000576 INF: FPGA: 'ZDACW 28140' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:33:57.900 -07 000000467 INF: FPGA: Recv YRDPOS 146471
17-03-18 01:33:57.910 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:33:57.910 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:57.910 -07 000000512 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:57.910 -07 000000512 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:33:57.910 -07 000000512 INF: Y Motor: Moving 1350 steps-29
17-03-18 01:33:57.910 -07 000000569 INF: FPGA: Recv ZDACR 28140
17-03-18 01:33:57.920 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:33:57.920 -07 000000576 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-18 01:33:57.920 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:33:58.080 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 01:33:58.080 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 01:33:58.080 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:58.090 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 01:33:58.090 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 01:33:58.090 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:33:58.090 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:33:58.090 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:33:58.090 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:33:58.090 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:33:58.290 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 01:33:58.290 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-18 01:33:58.340 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:58.340 -07 000000501 INF: FPGA: Recv YRDPOS 148172
17-03-18 01:33:58.350 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:33:58.350 -07 000000512 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:58.350 -07 000000512 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 01:33:58.350 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.174 mm/sec
17-03-18 01:33:59.300 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:33:59.300 -07 000000501 INF: FPGA: Recv YRDPOS 148172
17-03-18 01:33:59.310 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:33:59.310 -07 000000512 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:33:59.340 -07 000000512 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:33:59.340 -07 000000512 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:33:59.340 -07 000000512 INF: Y Motor: Moved to 72.3496 after 1448 ms (table move)
17-03-18 01:33:59.340 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128817 mm (DAC = 28140)
17-03-18 01:33:59.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:59.350 -07 000000467 INF: FPGA: Recv ZSGSRD 29342
17-03-18 01:33:59.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:33:59.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:59.350 -07 000000487 INF: FPGA: Recv ZSGSRD 29346
17-03-18 01:33:59.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:59.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:59.360 -07 000000512 INF: FPGA: Recv ZSGSRD 29347
17-03-18 01:33:59.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:59.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:59.370 -07 000000590 INF: FPGA: Recv ZSGSRD 29341
17-03-18 01:33:59.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:59.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:59.380 -07 000000629 INF: FPGA: Recv ZSGSRD 29342
17-03-18 01:33:59.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:59.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:59.390 -07 000000467 INF: FPGA: Recv ZSGSRD 29344
17-03-18 01:33:59.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:59.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:59.400 -07 000000487 INF: FPGA: Recv ZSGSRD 29341
17-03-18 01:33:59.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:59.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:59.410 -07 000000474 INF: FPGA: Recv ZSGSRD 29341
17-03-18 01:33:59.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:59.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:59.420 -07 000000590 INF: FPGA: Recv ZSGSRD 29342
17-03-18 01:33:59.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:59.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:59.430 -07 000000569 INF: FPGA: Recv ZSGSRD 29345
17-03-18 01:33:59.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:59.440 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:59.440 -07 000000585 INF: FPGA: Recv ZPIEZORD 24866
17-03-18 01:33:59.450 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:59.450 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.294 V. Piezo Error = -9.8 V.
17-03-18 01:33:59.450 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29343 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29342 (-128.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29341 (-128.0 uncal um), Max = 29347 (-128.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 01:33:59.450 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29343, posNoise = 4, negNoise = 2
17-03-18 01:33:59.450 -07 000000610 INF: Z Motor: After move to -0.128817, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:59.450 -07 000000610 INF: Z Motor: Settle wait time = 1450 ms, measure time = 104 ms (allowed 150 ms), total time = 1554 ms
17-03-18 01:33:59.450 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 01:33:59.500 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-18 01:33:59.500 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:33:59.500 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.128829008886827. ----------
17-03-18 01:33:59.500 -07 000000610 INF: Cycle	88	Tile	16	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:33:59.500 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27963, sync = True, waitForSettling = True)
17-03-18 01:33:59.500 -07 000000610 INF: Z Motor: Moving to -0.128006 mm, started at -0.128829 mm, distance = 0.82 um
17-03-18 01:33:59.500 -07 000000610 INF: FPGA: Xmit ZDACW 27963\n [Z Motor]
17-03-18 01:33:59.500 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 01:33:59.510 -07 000000610 INF: FPGA: 'ZDACW 27963' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:33:59.510 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:33:59.510 -07 000000467 INF: FPGA: Recv ZDACR 27963
17-03-18 01:33:59.520 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:59.520 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:33:59.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:59.670 -07 000000591 INF: FPGA: Recv ZSGSRD 29223
17-03-18 01:33:59.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:59.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:59.680 -07 000000512 INF: FPGA: Recv ZSGSRD 29220
17-03-18 01:33:59.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:59.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:59.690 -07 000000590 INF: FPGA: Recv ZSGSRD 29220
17-03-18 01:33:59.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:59.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:59.700 -07 000000569 INF: FPGA: Recv ZSGSRD 29212
17-03-18 01:33:59.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:59.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:59.710 -07 000000502 INF: FPGA: Recv ZSGSRD 29217
17-03-18 01:33:59.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:59.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:59.720 -07 000000501 INF: FPGA: Recv ZSGSRD 29214
17-03-18 01:33:59.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:59.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:59.730 -07 000000576 INF: FPGA: Recv ZSGSRD 29217
17-03-18 01:33:59.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:59.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:59.740 -07 000000479 INF: FPGA: Recv ZSGSRD 29214
17-03-18 01:33:59.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:59.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:59.750 -07 000000512 INF: FPGA: Recv ZSGSRD 29213
17-03-18 01:33:59.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:59.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:33:59.760 -07 000000487 INF: FPGA: Recv ZSGSRD 29217
17-03-18 01:33:59.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:59.770 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:33:59.770 -07 000000626 INF: FPGA: Recv ZPIEZORD 24669
17-03-18 01:33:59.780 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:33:59.780 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.267 V. Piezo Error = -10.0 V.
17-03-18 01:33:59.780 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29217 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29217 (-127.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29212 (-127.2 uncal um), Max = 29223 (-127.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:33:59.780 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29217, posNoise = 6, negNoise = 5
17-03-18 01:33:59.780 -07 000000610 INF: Z Motor: After move to -0.128006, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:33:59.780 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 01:33:59.780 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:33:59.780 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:33:59.780 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:33:59.780 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:33:59.780 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:33:59.780 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:33:59.780 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:33:59.780 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:33:59.780 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:33:59.780 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:33:59.780 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:33:59.780 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:33:59.790 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:33:59.790 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:33:59.790 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:33:59.790 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:33:59.790 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:33:59.790 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:33:59.790 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:33:59.790 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:33:59.800 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28140 150\n [Camera]
17-03-18 01:34:00.000 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:34:00.390 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:34:00.390 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:34:00.390 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:34:00.390 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:34:00.390 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:34:00.390 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:34:00.390 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:34:00.390 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 01:34:00.390 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:34:00.390 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-18 01:34:00.580 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28140 775
17-03-18 01:34:00.730 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:34:00.790 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 01:34:00.790 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:34:00.790 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:34:00.790 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:34:00.790 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:34:00.790 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:34:00.790 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:34:00.790 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:34:00.800 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:34:00.800 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 01:34:00.920 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:34:00.920 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:34:00.920 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:34:00.920 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:34:00.920 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) start.
17-03-18 01:34:00.920 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:34:00.920 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:34:00.920 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:34:00.920 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:34:00.920 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:34:01.110 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:34:01.110 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:34:01.110 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28140 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-18 01:34:01.230 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.128584
17-03-18 01:34:01.230 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.12858 mm
17-03-18 01:34:01.230 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:34:01.230 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 01:34:01.230 -07 000000474 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-18 01:34:01.230 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:34:01.230 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 28089, sync = True, waitForSettling = False)
17-03-18 01:34:01.230 -07 000000629 INF: Z Motor: Moving to -0.128583 mm, started at -0.128020 mm, distance = -0.56 um
17-03-18 01:34:01.230 -07 000000576 INF: FPGA: Recv YRDPOS 148172
17-03-18 01:34:01.240 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:34:01.240 -07 000000474 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:34:01.240 -07 000000474 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:34:01.240 -07 000000474 INF: Y Motor: Moving 1349 steps-27
17-03-18 01:34:01.240 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:34:01.250 -07 000000629 INF: FPGA: Xmit ZDACW 28089\n [Z Motor]
17-03-18 01:34:01.250 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 01:34:01.260 -07 000000629 INF: FPGA: 'ZDACW 28089' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 01:34:01.260 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:34:01.260 -07 000000502 INF: FPGA: Recv ZDACR 28089
17-03-18 01:34:01.270 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:01.270 -07 000000629 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-18 01:34:01.310 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 01:34:01.310 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 01:34:01.310 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:34:01.310 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 01:34:01.310 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:34:01.310 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:34:01.310 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:34:01.320 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:34:01.320 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:34:01.320 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:34:01.610 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 01:34:01.610 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 01:34:01.660 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:34:01.660 -07 000000625 INF: FPGA: Recv YRDPOS 149864
17-03-18 01:34:01.670 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:34:01.670 -07 000000474 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:34:01.670 -07 000000474 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 01:34:01.670 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.843 mm, average velocity = 2.230 mm/sec
17-03-18 01:34:02.150 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 4.003063,
17-03-18 01:34:02.270 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:34:02.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:34:02.620 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:34:02.620 -07 000000424 INF: FPGA: Recv YRDPOS 149864
17-03-18 01:34:02.630 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:02.630 -07 000000474 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:34:02.650 -07 000000474 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:34:02.650 -07 000000474 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:34:02.650 -07 000000474 INF: Y Motor: Moved to 73.1758 after 1422 ms (table move)
17-03-18 01:34:02.650 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128583 mm (DAC = 28089)
17-03-18 01:34:02.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:02.660 -07 000000625 INF: FPGA: Recv ZSGSRD 29304
17-03-18 01:34:02.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:34:02.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:02.670 -07 000000576 INF: FPGA: Recv ZSGSRD 29309
17-03-18 01:34:02.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:02.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:02.680 -07 000000625 INF: FPGA: Recv ZSGSRD 29302
17-03-18 01:34:02.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:02.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:02.690 -07 000000576 INF: FPGA: Recv ZSGSRD 29310
17-03-18 01:34:02.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:02.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:02.700 -07 000000625 INF: FPGA: Recv ZSGSRD 29309
17-03-18 01:34:02.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:02.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:02.710 -07 000000576 INF: FPGA: Recv ZSGSRD 29308
17-03-18 01:34:02.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:02.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:02.720 -07 000000424 INF: FPGA: Recv ZSGSRD 29303
17-03-18 01:34:02.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:02.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:02.730 -07 000000629 INF: FPGA: Recv ZSGSRD 29296
17-03-18 01:34:02.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:02.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:02.740 -07 000000502 INF: FPGA: Recv ZSGSRD 29298
17-03-18 01:34:02.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:02.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:02.750 -07 000000474 INF: FPGA: Recv ZSGSRD 29306
17-03-18 01:34:02.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:02.760 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:34:02.760 -07 000000424 INF: FPGA: Recv ZPIEZORD 24843
17-03-18 01:34:02.770 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:02.770 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.286 V. Piezo Error = -9.8 V.
17-03-18 01:34:02.770 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29304 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29305 (-127.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29296 (-127.8 uncal um), Max = 29310 (-127.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:34:02.770 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29304, posNoise = 6, negNoise = 8
17-03-18 01:34:02.770 -07 000000610 INF: Z Motor: After move to -0.128583, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:34:02.770 -07 000000610 INF: Z Motor: Settle wait time = 1424 ms, measure time = 111 ms (allowed 150 ms), total time = 1535 ms
17-03-18 01:34:02.770 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:34:02.810 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1576 ms
17-03-18 01:34:02.810 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:34:02.810 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.128578464613298. ----------
17-03-18 01:34:02.810 -07 000000610 INF: Cycle	88	Tile	17	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:34:02.810 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27912, sync = True, waitForSettling = True)
17-03-18 01:34:02.810 -07 000000610 INF: Z Motor: Moving to -0.127773 mm, started at -0.128578 mm, distance = 0.81 um
17-03-18 01:34:02.810 -07 000000610 INF: FPGA: Xmit ZDACW 27912\n [Z Motor]
17-03-18 01:34:02.810 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 01:34:02.820 -07 000000610 INF: FPGA: 'ZDACW 27912' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:34:02.820 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:34:02.820 -07 000000576 INF: FPGA: Recv ZDACR 27912
17-03-18 01:34:02.830 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:02.830 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:34:02.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:02.980 -07 000000629 INF: FPGA: Recv ZSGSRD 29184
17-03-18 01:34:02.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:34:02.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:02.990 -07 000000474 INF: FPGA: Recv ZSGSRD 29186
17-03-18 01:34:03.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:03.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:03.000 -07 000000629 INF: FPGA: Recv ZSGSRD 29183
17-03-18 01:34:03.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:03.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:03.010 -07 000000501 INF: FPGA: Recv ZSGSRD 29180
17-03-18 01:34:03.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:34:03.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:03.020 -07 000000424 INF: FPGA: Recv ZSGSRD 29182
17-03-18 01:34:03.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:03.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:03.030 -07 000000629 INF: FPGA: Recv ZSGSRD 29180
17-03-18 01:34:03.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:03.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:03.040 -07 000000625 INF: FPGA: Recv ZSGSRD 29182
17-03-18 01:34:03.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:03.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:03.050 -07 000000424 INF: FPGA: Recv ZSGSRD 29173
17-03-18 01:34:03.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:03.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:03.060 -07 000000625 INF: FPGA: Recv ZSGSRD 29175
17-03-18 01:34:03.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:03.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:03.070 -07 000000424 INF: FPGA: Recv ZSGSRD 29181
17-03-18 01:34:03.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:03.080 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:34:03.080 -07 000000474 INF: FPGA: Recv ZPIEZORD 24663
17-03-18 01:34:03.090 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:03.090 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.259 V. Piezo Error = -9.9 V.
17-03-18 01:34:03.090 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.8 um, Read 10 ADC samples: Avg = 29181 (-127.0 uncal um), Error = 0.8 uncal um, Median = 29182 (-127.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29173 (-127.0 uncal um), Max = 29186 (-127.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:34:03.090 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29181, posNoise = 5, negNoise = 8
17-03-18 01:34:03.090 -07 000000610 INF: Z Motor: After move to -0.127773, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:34:03.090 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 01:34:03.090 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:34:03.090 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:34:03.090 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:34:03.090 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:34:03.090 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:34:03.090 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:34:03.090 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:34:03.090 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:34:03.090 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:34:03.090 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:34:03.090 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:34:03.100 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:34:03.100 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:34:03.100 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:34:03.100 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:34:03.100 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:34:03.110 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:34:03.110 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:34:03.110 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:34:03.110 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:34:03.120 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28089 150\n [Camera]
17-03-18 01:34:03.320 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:34:03.710 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:34:03.710 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:34:03.710 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:34:03.710 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:34:03.710 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:34:03.710 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:34:03.710 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:34:03.710 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:34:03.710 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:34:03.710 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:34:03.900 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28089 775
17-03-18 01:34:04.050 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:34:04.100 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 01:34:04.100 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 01:34:04.100 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:34:04.100 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:34:04.100 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:34:04.100 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 01:34:04.100 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 01:34:04.100 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:34:04.110 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:34:04.110 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:34:04.240 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:34:04.240 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:34:04.240 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:34:04.240 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:34:04.240 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:34:04.240 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:34:04.240 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:34:04.240 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 01:34:04.250 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:34:04.250 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 01:34:04.430 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-18 01:34:04.430 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:34:04.430 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28089 150' command took 2 ms to send, 1303 ms to get response, and 1312 ms overall
17-03-18 01:34:04.430 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.128113
17-03-18 01:34:04.430 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.12811 mm
17-03-18 01:34:04.430 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:34:04.430 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 27986, sync = True, waitForSettling = False)
17-03-18 01:34:04.430 -07 000000474 INF: Z Motor: Moving to -0.128112 mm, started at -0.127788 mm, distance = -0.32 um
17-03-18 01:34:04.430 -07 000000474 INF: FPGA: Xmit ZDACW 27986\n [Z Motor]
17-03-18 01:34:04.430 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 01:34:04.430 -07 000000501 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-18 01:34:04.440 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:34:04.440 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 01:34:04.440 -07 000000474 INF: FPGA: 'ZDACW 27986' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:34:04.440 -07 000000569 INF: FPGA: Recv YRDPOS 149865
17-03-18 01:34:04.450 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:34:04.450 -07 000000501 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:34:04.450 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:34:04.450 -07 000000479 INF: FPGA: Recv ZDACR 27986
17-03-18 01:34:04.450 -07 000000501 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:34:04.450 -07 000000501 INF: Y Motor: Moving 1354 steps-34
17-03-18 01:34:04.460 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:34:04.460 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:34:04.460 -07 000000474 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-18 01:34:04.620 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 01:34:04.620 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 01:34:04.620 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:34:04.620 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 01:34:04.620 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 01:34:04.620 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:34:04.620 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:34:04.620 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:34:04.630 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 01:34:04.630 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 01:34:04.830 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 01:34:04.830 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 01:34:04.870 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:34:04.870 -07 000000487 INF: FPGA: Recv YRDPOS 151569
17-03-18 01:34:04.880 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:34:04.880 -07 000000501 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:34:04.880 -07 000000501 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 01:34:04.880 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.847 mm, average velocity = 2.205 mm/sec
17-03-18 01:34:05.830 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:34:05.830 -07 000000474 INF: FPGA: Recv YRDPOS 151569
17-03-18 01:34:05.840 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:05.840 -07 000000501 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:34:05.860 -07 000000501 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:34:05.860 -07 000000501 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:34:05.860 -07 000000501 INF: Y Motor: Moved to 74.0083 after 1422 ms (table move)
17-03-18 01:34:05.860 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128112 mm (DAC = 27986)
17-03-18 01:34:05.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:05.880 -07 000000585 INF: FPGA: Recv ZSGSRD 29227
17-03-18 01:34:05.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 01:34:05.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:05.890 -07 000000585 INF: FPGA: Recv ZSGSRD 29229
17-03-18 01:34:05.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:05.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:05.900 -07 000000629 INF: FPGA: Recv ZSGSRD 29233
17-03-18 01:34:05.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:05.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:05.910 -07 000000585 INF: FPGA: Recv ZSGSRD 29233
17-03-18 01:34:05.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:05.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:05.920 -07 000000585 INF: FPGA: Recv ZSGSRD 29234
17-03-18 01:34:05.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:05.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:05.930 -07 000000501 INF: FPGA: Recv ZSGSRD 29229
17-03-18 01:34:05.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:05.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:05.940 -07 000000629 INF: FPGA: Recv ZSGSRD 29230
17-03-18 01:34:05.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:05.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:05.950 -07 000000501 INF: FPGA: Recv ZSGSRD 29227
17-03-18 01:34:05.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:05.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:05.960 -07 000000474 INF: FPGA: Recv ZSGSRD 29228
17-03-18 01:34:05.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:05.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:05.970 -07 000000585 INF: FPGA: Recv ZSGSRD 29237
17-03-18 01:34:05.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:05.980 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:34:05.980 -07 000000501 INF: FPGA: Recv ZPIEZORD 24763
17-03-18 01:34:05.990 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:05.990 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.270 V. Piezo Error = -9.8 V.
17-03-18 01:34:05.990 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29231 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29230 (-127.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29227 (-127.3 uncal um), Max = 29237 (-127.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:34:05.990 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29231, posNoise = 6, negNoise = 4
17-03-18 01:34:05.990 -07 000000610 INF: Z Motor: After move to -0.128112, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:34:05.990 -07 000000610 INF: Z Motor: Settle wait time = 1426 ms, measure time = 126 ms (allowed 150 ms), total time = 1552 ms
17-03-18 01:34:05.990 -07 000000610 INF: Z Motor: Waiting extra 24 ms after reading position to reach expected total of 150 ms
17-03-18 01:34:06.020 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-18 01:34:06.020 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:34:06.020 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.12810949712695. ----------
17-03-18 01:34:06.020 -07 000000610 INF: Cycle	88	Tile	18	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:34:06.020 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27809, sync = True, waitForSettling = True)
17-03-18 01:34:06.020 -07 000000610 INF: Z Motor: Moving to -0.127301 mm, started at -0.128109 mm, distance = 0.81 um
17-03-18 01:34:06.020 -07 000000610 INF: FPGA: Xmit ZDACW 27809\n [Z Motor]
17-03-18 01:34:06.020 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 01:34:06.030 -07 000000610 INF: FPGA: 'ZDACW 27809' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:34:06.030 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:34:06.030 -07 000000474 INF: FPGA: Recv ZDACR 27809
17-03-18 01:34:06.040 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:06.040 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:34:06.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:06.190 -07 000000501 INF: FPGA: Recv ZSGSRD 29104
17-03-18 01:34:06.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:34:06.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:06.200 -07 000000474 INF: FPGA: Recv ZSGSRD 29113
17-03-18 01:34:06.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:06.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:06.210 -07 000000487 INF: FPGA: Recv ZSGSRD 29106
17-03-18 01:34:06.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:06.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:06.220 -07 000000487 INF: FPGA: Recv ZSGSRD 29107
17-03-18 01:34:06.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:06.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:06.230 -07 000000474 INF: FPGA: Recv ZSGSRD 29110
17-03-18 01:34:06.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:06.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:06.240 -07 000000474 INF: FPGA: Recv ZSGSRD 29105
17-03-18 01:34:06.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:06.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:06.250 -07 000000629 INF: FPGA: Recv ZSGSRD 29110
17-03-18 01:34:06.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:06.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:06.260 -07 000000629 INF: FPGA: Recv ZSGSRD 29105
17-03-18 01:34:06.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:06.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:06.270 -07 000000629 INF: FPGA: Recv ZSGSRD 29102
17-03-18 01:34:06.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:06.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:06.280 -07 000000629 INF: FPGA: Recv ZSGSRD 29103
17-03-18 01:34:06.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:06.290 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:34:06.290 -07 000000474 INF: FPGA: Recv ZPIEZORD 24578
17-03-18 01:34:06.300 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:06.300 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.243 V. Piezo Error = -9.9 V.
17-03-18 01:34:06.300 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.3 um, Read 10 ADC samples: Avg = 29106 (-126.5 uncal um), Error = 0.8 uncal um, Median = 29106 (-126.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29102 (-126.5 uncal um), Max = 29113 (-126.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:34:06.300 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29106, posNoise = 7, negNoise = 4
17-03-18 01:34:06.300 -07 000000610 INF: Z Motor: After move to -0.127301, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:34:06.300 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 01:34:06.300 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:34:06.300 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:34:06.300 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:34:06.300 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:34:06.300 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:34:06.300 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:34:06.300 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:34:06.300 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:34:06.300 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:34:06.300 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:34:06.300 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:34:06.300 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:34:06.310 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:34:06.310 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:34:06.310 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:34:06.310 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:34:06.320 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:34:06.320 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:34:06.320 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:34:06.320 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:34:06.330 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 27986 150\n [Camera]
17-03-18 01:34:06.520 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:34:06.920 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:34:06.920 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:34:06.920 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:34:06.920 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:34:06.920 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:34:06.920 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:34:06.920 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:34:06.920 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 01:34:06.920 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:34:06.920 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 01:34:07.110 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27986 775
17-03-18 01:34:07.260 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:34:07.270 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:34:07.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 87. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:34:07.290 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 01:34:07.290 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 01:34:07.290 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:34:07.290 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 01:34:07.300 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 01:34:07.300 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:34:07.300 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:34:07.300 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 01:34:07.300 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:34:07.310 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 01:34:07.450 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-18 01:34:07.450 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-18 01:34:07.450 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:34:07.560 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-18 01:34:07.560 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-18 01:34:07.570 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:34:07.570 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:34:07.570 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:34:07.570 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 3.990831,
17-03-18 01:34:07.570 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:34:07.570 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:34:07.640 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:34:07.640 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:34:07.640 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 27986 150' command took 2 ms to send, 1302 ms to get response, and 1312 ms overall
17-03-18 01:34:07.640 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:34:07.640 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.127306470609229. ------
17-03-18 01:34:07.640 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:34:07.640 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13323 mm
17-03-18 01:34:07.640 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:34:07.650 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 01:34:07.650 -07 000000585 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 01:34:07.650 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:34:07.650 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:34:07.650 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:34:07.650 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 29104, sync = True, waitForSettling = False)
17-03-18 01:34:07.650 -07 000000590 INF: Z Motor: Moving to -0.133230 mm, started at -0.127306 mm, distance = -5.92 um
17-03-18 01:34:07.650 -07 000000629 INF: FPGA: Recv YRDPOS 151569
17-03-18 01:34:07.660 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:07.660 -07 000000585 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:34:07.660 -07 000000585 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:34:07.660 -07 000000585 INF: Y Motor: Moving 1351 steps-29
17-03-18 01:34:07.660 -07 000000590 INF: FPGA: Xmit ZDACW 29104\n [Z Motor]
17-03-18 01:34:07.660 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 01:34:07.670 -07 000000590 INF: FPGA: 'ZDACW 29104' command took 4 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:34:07.670 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:34:07.680 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:34:07.690 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:34:07.690 -07 000000512 INF: FPGA: Recv ZDACR 29104
17-03-18 01:34:07.700 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:34:07.700 -07 000000590 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 01:34:07.870 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:34:07.870 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 01:34:07.970 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:34:07.970 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:34:07.970 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:34:07.970 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:34:07.970 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:34:07.970 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:34:07.970 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:34:07.970 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 527 ms.
17-03-18 01:34:07.980 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:34:07.980 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 01:34:08.060 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 01:34:08.060 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 396 ms overall
17-03-18 01:34:08.080 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:34:08.090 -07 000000591 INF: FPGA: Recv YRDPOS 153255
17-03-18 01:34:08.090 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:34:08.090 -07 000000585 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:34:08.090 -07 000000585 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-18 01:34:08.090 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.127 mm/sec
17-03-18 01:34:09.040 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:34:09.040 -07 000000629 INF: FPGA: Recv YRDPOS 153256
17-03-18 01:34:09.050 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:09.050 -07 000000585 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:34:09.060 -07 000000585 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:34:09.060 -07 000000585 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:34:09.060 -07 000000585 INF: Y Motor: Moved to 74.8320 after 1418 ms (table move)
17-03-18 01:34:09.070 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133230 mm (DAC = 29104)
17-03-18 01:34:09.070 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:09.070 -07 000000585 INF: FPGA: Recv ZSGSRD 30034
17-03-18 01:34:09.080 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:34:09.080 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:09.080 -07 000000585 INF: FPGA: Recv ZSGSRD 30023
17-03-18 01:34:09.090 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:09.090 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:09.090 -07 000000585 INF: FPGA: Recv ZSGSRD 30029
17-03-18 01:34:09.100 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:09.100 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:09.100 -07 000000501 INF: FPGA: Recv ZSGSRD 30037
17-03-18 01:34:09.110 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:09.110 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:09.110 -07 000000561 INF: FPGA: Recv ZSGSRD 30035
17-03-18 01:34:09.120 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:09.120 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:09.120 -07 000000561 INF: FPGA: Recv ZSGSRD 30030
17-03-18 01:34:09.130 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:09.130 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:09.130 -07 000000585 INF: FPGA: Recv ZSGSRD 30024
17-03-18 01:34:09.140 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:09.140 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:09.140 -07 000000590 INF: FPGA: Recv ZSGSRD 30027
17-03-18 01:34:09.150 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:09.150 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:09.150 -07 000000501 INF: FPGA: Recv ZSGSRD 30019
17-03-18 01:34:09.160 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:09.160 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:09.160 -07 000000512 INF: FPGA: Recv ZSGSRD 30026
17-03-18 01:34:09.170 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:09.170 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:34:09.170 -07 000000512 INF: FPGA: Recv ZPIEZORD 25812
17-03-18 01:34:09.180 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:09.180 -07 000000474 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.441 V. Piezo Error = -9.3 V.
17-03-18 01:34:09.180 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30028 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30028 (-132.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30019 (-132.4 uncal um), Max = 30037 (-132.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:34:09.180 -07 000000474 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30028, posNoise = 9, negNoise = 9
17-03-18 01:34:09.180 -07 000000474 INF: Z Motor: After move to -0.133230, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:34:09.180 -07 000000474 INF: Z Motor: Settle wait time = 1421 ms, measure time = 107 ms (allowed 150 ms), total time = 1528 ms
17-03-18 01:34:09.180 -07 000000474 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 01:34:09.230 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms
17-03-18 01:34:09.230 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:34:09.230 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:34:09.230 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:34:09.230 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:34:09.230 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:34:09.230 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:34:09.230 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:34:09.230 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:34:09.230 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:34:09.240 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:34:09.240 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:34:09.250 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:34:09.250 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:34:09.250 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:34:09.300 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:34:09.600 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:34:09.600 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:34:09.600 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:34:09.600 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-18 01:34:09.640 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:34:09.640 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 01:34:09.640 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 01:34:09.730 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:34:09.730 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:34:09.730 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:34:09.730 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:34:09.740 -07 000000501 INF: Autofocus start
17-03-18 01:34:09.740 -07 000000501 INF: MeasureProfile start
17-03-18 01:34:09.740 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:34:09.740 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:34:09.750 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:34:09.750 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:34:09.750 -07 000000501 INF: MeasureProfile done
17-03-18 01:34:09.750 -07 000000501 INF: X=32  Z correction [um]=0.1299841
17-03-18 01:34:09.750 -07 000000501 INF: Autofocus finished
17-03-18 01:34:09.950 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:34:09.950 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:34:09.950 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.133229594203933. ----------
17-03-18 01:34:09.950 -07 000000610 INF: Cycle	88	Tile	19	Exposure Settings		A	390	G	188	T	188	C	390
17-03-18 01:34:09.960 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27645, sync = True, waitForSettling = True)
17-03-18 01:34:09.960 -07 000000610 INF: Z Motor: Moving to -0.126551 mm, started at -0.133230 mm, distance = 6.68 um
17-03-18 01:34:09.960 -07 000000610 INF: FPGA: Xmit ZDACW 27645\n [Z Motor]
17-03-18 01:34:09.960 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:34:09.970 -07 000000610 INF: FPGA: 'ZDACW 27645' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:34:09.970 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:34:09.970 -07 000000590 INF: FPGA: Recv ZDACR 27645
17-03-18 01:34:09.980 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:09.980 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:34:10.130 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:10.130 -07 000000474 INF: FPGA: Recv ZSGSRD 28985
17-03-18 01:34:10.140 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:34:10.140 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:10.140 -07 000000512 INF: FPGA: Recv ZSGSRD 28993
17-03-18 01:34:10.150 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:10.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:10.150 -07 000000590 INF: FPGA: Recv ZSGSRD 28984
17-03-18 01:34:10.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:10.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:10.160 -07 000000512 INF: FPGA: Recv ZSGSRD 28988
17-03-18 01:34:10.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:10.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:10.170 -07 000000474 INF: FPGA: Recv ZSGSRD 28986
17-03-18 01:34:10.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:10.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:10.180 -07 000000590 INF: FPGA: Recv ZSGSRD 28994
17-03-18 01:34:10.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:10.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:10.190 -07 000000474 INF: FPGA: Recv ZSGSRD 28993
17-03-18 01:34:10.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:10.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:10.200 -07 000000512 INF: FPGA: Recv ZSGSRD 28986
17-03-18 01:34:10.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:10.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:10.210 -07 000000512 INF: FPGA: Recv ZSGSRD 28986
17-03-18 01:34:10.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:10.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:34:10.220 -07 000000590 INF: FPGA: Recv ZSGSRD 28988
17-03-18 01:34:10.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:10.230 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:34:10.230 -07 000000625 INF: FPGA: Recv ZPIEZORD 24485
17-03-18 01:34:10.240 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:10.240 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.218 V. Piezo Error = -9.9 V.
17-03-18 01:34:10.240 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.6 um, Read 10 ADC samples: Avg = 28988 (-125.8 uncal um), Error = 0.8 uncal um, Median = 28987 (-125.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 28984 (-125.8 uncal um), Max = 28994 (-125.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:34:10.240 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28988, posNoise = 6, negNoise = 4
17-03-18 01:34:10.240 -07 000000610 INF: Z Motor: After move to -0.126551, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:34:10.240 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:34:10.240 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:34:10.240 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:34:10.240 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:34:10.240 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:34:10.240 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:34:10.240 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:34:10.240 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:34:10.240 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:34:10.240 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:34:10.240 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:34:10.240 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:34:10.240 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:34:10.250 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:34:10.250 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:34:10.250 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:34:10.250 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:34:10.260 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:34:10.260 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:34:10.260 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 01:34:10.260 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 01:34:10.260 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 27821 150\n [Camera]
17-03-18 01:34:10.460 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:34:10.850 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-18 01:34:10.850 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-18 01:34:10.850 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:34:10.850 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-18 01:34:10.850 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-18 01:34:10.860 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:34:10.860 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1443674384, 0x0, 391868352) start.
17-03-18 01:34:10.860 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:34:10.860 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:34:10.860 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:34:11.040 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27821 775
17-03-18 01:34:11.190 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-18 01:34:11.240 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1443674384, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 01:34:11.240 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 01:34:11.240 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:34:11.240 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 01:34:11.240 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 01:34:11.240 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:34:11.240 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:34:11.240 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 01:34:11.240 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:34:11.250 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 01:34:11.380 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1116
17-03-18 01:34:11.380 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1116
17-03-18 01:34:11.380 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:34:11.490 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1116
17-03-18 01:34:11.490 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1116
17-03-18 01:34:11.490 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:34:11.500 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:34:11.500 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:34:11.500 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:34:11.500 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:34:11.570 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:34:11.570 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:34:11.570 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 27821 150' command took 2 ms to send, 1307 ms to get response, and 1312 ms overall
17-03-18 01:34:11.880 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 01:34:11.880 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 01:34:11.880 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:34:11.890 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:34:11.890 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 01:34:11.890 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 01:34:11.890 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:34:11.890 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:34:11.890 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 509 ms.
17-03-18 01:34:11.890 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 01:34:11.890 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:34:11.940 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 01:34:11.940 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 01:34:11.980 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 01:34:11.990 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-18 01:34:11.990 -07 000000610 INF: Imaging Cycle 88: ScanTilesCommand Cycle 88 time end. Duration was 146179 ms.
17-03-18 01:34:11.990 -07 000000610 INF: =================== Cycle #88 ===================
17-03-18 01:34:11.990 -07 000000610 INF: ===================  ===================
17-03-18 01:34:12.000 -07 000000502 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 01:34:12.000 -07 000000590 INF: FPGA: Recv EXLED1ADCR 27
17-03-18 01:34:12.010 -07 000000502 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:34:12.010 -07 000000502 INF: GreenLED: Using Green data: Photodiode ADC 27 --> 0.0 mW (old method), or 2.0 mW (new method). Difference = 2.0 mW
17-03-18 01:34:12.010 -07 000000502 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 88, FrontChillerTemperature: 3.990831, FrontChillerHeatSinkTemperature: 0.269379, AmbientTemperature: 18.74165, FlowCellCompartmentTemperature: 21.9911, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.65887, GreenLEDSensorTemperature: 25.79623, PhotodiodePowerAdcGreen: 27, PhotodiodePowerMwGreen: 2.018235
17-03-18 01:34:12.090 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.