17-03-18 01:34:12.140 -07 000000610 INF: =================== Cycle #89 ===================
17-03-18 01:34:12.140 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 01:34:12.140 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-18 01:34:12.140 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:34:12.140 -07 000000512 INF: FPGA: Recv YRDPOS 153256
17-03-18 01:34:12.150 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:34:12.150 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:34:12.150 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 01:34:12.150 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 01:34:12.150 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 01:34:12.260 -07 000000424 INF: FPGA: Recv YMVTO 154379 878
17-03-18 01:34:12.260 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 108 ms to get response, and 117 ms overall
17-03-18 01:34:12.260 -07 000000610 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 01:34:12.260 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 878 steps (0.549 mm). Slippage = 0.001 mm (0.00%).
17-03-18 01:34:12.260 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 118 ms, distance = 0.549 mm, average velocity = 4.649 mm/sec
17-03-18 01:34:12.270 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:34:12.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:34:12.930 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 3.996267,
17-03-18 01:34:15.260 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:34:15.980 -07 000000569 INF: FPGA: Recv YRDPOS 154387
17-03-18 01:34:15.980 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 710 ms to get response, and 720 ms overall
17-03-18 01:34:15.980 -07 000000610 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:34:16.000 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.003697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:34:16.000 -07 000000610 INF: Y Motor: Position error after settling = 8 encoder counts (0.004 mm), Delta during settling = 8 counts (0.004 mm)
17-03-18 01:34:16.000 -07 000000610 INF: Y Motor: Moved to 75.3843 after 3858 ms
17-03-18 01:34:16.000 -07 000000610 INF: =================== Cycle #89, Flow Cell Temp 60° ===================
17-03-18 01:34:16.000 -07 000000610 INF: =================== Cycle #89, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 01:34:16.000 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 01:34:16.010 -07 000000479 INF: FPGA: Recv TEC2TEMP 
17-03-18 01:34:16.020 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:34:16.020 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 01:34:16.020 -07 000000625 INF: FPGA: Recv TEC2EN 
17-03-18 01:34:16.030 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:16.030 -07 000000610 INF: =================== Cycle #89, Flow Cell Temp 60° ===================
17-03-18 01:34:16.030 -07 000000610 INF: =================== Cycle #89 ===================
17-03-18 01:34:16.030 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:34:16.030 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:34:16.060 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 01:34:16.060 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 01:34:16.060 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 01:34:16.360 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:34:16.380 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 01:34:16.380 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 01:34:16.430 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:34:16.450 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:34:16.450 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:34:16.550 -07 000000610 INF: =================== Cycle #89, Pumping Reagent PR2 (3) ===================
17-03-18 01:34:16.550 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 01:34:16.550 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:34:16.580 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 01:34:16.580 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 01:34:16.580 -07 000000610 INF: =================== Cycle #89, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:34:16.710 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 01:34:16.750 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:34:17.270 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:34:17.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1395, R2=1449, Total=2844. Warn if over 250 bubbles per interval.
17-03-18 01:34:18.290 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 3.977204,
17-03-18 01:34:19.880 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:34:19.910 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:34:20.330 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:34:20.360 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:34:20.780 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:34:20.810 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:34:20.810 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 01:34:20.810 -07 000000610 INF: =================== Cycle #89, Pumping Reagent PR2 (3) ===================
17-03-18 01:34:20.940 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:34:20.970 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:34:20.970 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:34:21.100 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:34:21.130 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:34:21.130 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:34:21.130 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:34:21.260 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:34:21.290 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:34:21.720 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:34:21.750 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:34:21.750 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:34:21.750 -07 000000610 INF: =================== Cycle #89 ===================
17-03-18 01:34:22.270 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 7 R1 7
17-03-18 01:34:22.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=7, R2=7, Total=14. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1402, R2=1456, Total=2858. Warn if over 250 bubbles per interval.
17-03-18 01:34:22.970 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:34:22.970 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 01:34:22.970 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:34:22.990 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:34:22.990 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 01:34:22.990 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 01:34:23.130 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:34:23.150 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 01:34:23.150 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 01:34:23.200 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:34:23.220 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 01:34:23.220 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:34:23.320 -07 000000610 INF: =================== Cycle #89, Pumping Reagent CMS (4) ===================
17-03-18 01:34:23.320 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 01:34:23.320 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:34:23.350 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:34:23.350 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:34:23.350 -07 000000610 INF: =================== Cycle #89, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 01:34:23.480 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 01:34:23.520 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:34:23.650 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 4.011254,
17-03-18 01:34:24.960 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:34:24.990 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:34:25.410 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:34:25.440 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:34:25.440 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 01:34:25.440 -07 000000610 INF: =================== Cycle #89, Pumping Reagent CMS (4) ===================
17-03-18 01:34:25.570 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:34:25.600 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:34:25.600 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:34:25.730 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:34:25.760 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:34:25.760 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:34:25.760 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:34:25.890 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:34:25.920 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:34:26.350 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:34:26.380 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:34:26.380 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:34:26.380 -07 000000610 INF: =================== Cycle #89 ===================
17-03-18 01:34:27.270 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 01:34:27.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1403, R2=1456, Total=2859. Warn if over 250 bubbles per interval.
17-03-18 01:34:27.600 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:34:27.600 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:34:27.600 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:34:27.620 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 01:34:27.620 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 01:34:27.620 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 01:34:27.770 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:34:27.790 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 01:34:27.790 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 01:34:27.840 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:34:27.860 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:34:27.860 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:34:27.960 -07 000000610 INF: =================== Cycle #89, Pumping Reagent PR2 (3) ===================
17-03-18 01:34:27.960 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 01:34:27.960 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:34:27.990 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:34:27.990 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:34:27.990 -07 000000610 INF: =================== Cycle #89, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:34:28.120 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 01:34:28.160 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:34:29.010 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 4.015368,
17-03-18 01:34:29.030 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:34:29.060 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:34:29.060 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-18 01:34:29.060 -07 000000610 INF: =================== Cycle #89, Pumping Reagent PR2 (3) ===================
17-03-18 01:34:29.190 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:34:29.220 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:34:29.220 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:34:29.350 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:34:29.380 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:34:29.380 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:34:29.380 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:34:29.510 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:34:29.540 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:34:29.970 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:34:30.000 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:34:30.000 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:34:30.000 -07 000000610 INF: =================== Cycle #89 ===================
17-03-18 01:34:30.000 -07 000000569 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:34:30.000 -07 000000424 INF: WaitCommand(10000) start
17-03-18 01:34:30.000 -07 000000569 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 01:34:31.220 -07 000000569 INF: AsyncDelayTimer waited 1216ms
17-03-18 01:34:31.220 -07 000000569 INF: LanePump: Xmit /1?\r
17-03-18 01:34:31.250 -07 000000569 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:34:31.250 -07 000000569 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:34:31.380 -07 000000569 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 01:34:31.420 -07 000000569 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:34:32.270 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 01:34:32.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1403, R2=1457, Total=2860. Warn if over 250 bubbles per interval.
17-03-18 01:34:32.950 -07 000000569 INF: LanePump: Xmit /1Q\r
17-03-18 01:34:32.980 -07 000000569 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:34:33.400 -07 000000569 INF: LanePump: Xmit /1Q\r
17-03-18 01:34:33.430 -07 000000569 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:34:33.430 -07 000000569 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 01:34:33.430 -07 000000569 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:34:33.430 -07 000000569 INF: ===================  ===================
17-03-18 01:34:34.370 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 4.027603,
17-03-18 01:34:37.270 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:34:37.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1403, R2=1457, Total=2860. Warn if over 250 bubbles per interval.
17-03-18 01:34:39.730 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 4.027603,
17-03-18 01:34:40.010 -07 000000424 INF: WaitCommand(10000) end
17-03-18 01:34:40.010 -07 000000610 INF: =================== Cycle #89, Pumping Reagent PR2 (3) ===================
17-03-18 01:34:40.010 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 01:34:40.010 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:34:40.040 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 01:34:40.040 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 01:34:40.040 -07 000000610 INF: =================== Cycle #89, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:34:40.170 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 01:34:40.210 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:34:42.270 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:34:42.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1403, R2=1457, Total=2860. Warn if over 250 bubbles per interval.
17-03-18 01:34:45.090 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 4.053471,
17-03-18 01:34:46.340 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:34:46.370 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:34:46.790 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:34:46.820 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:34:47.240 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:34:47.270 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:34:47.270 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 2
17-03-18 01:34:47.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=2, R2=1, Total=3. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1405, R2=1458, Total=2863. Warn if over 250 bubbles per interval.
17-03-18 01:34:47.690 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:34:47.720 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:34:48.140 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:34:48.170 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:34:48.170 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 01:34:48.170 -07 000000610 INF: =================== Cycle #89, Pumping Reagent PR2 (3) ===================
17-03-18 01:34:48.300 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:34:48.330 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 01:34:48.330 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 01:34:48.460 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:34:48.490 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 01:34:48.490 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 01:34:48.490 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:34:48.620 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:34:48.650 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:34:49.080 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:34:49.110 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:34:49.110 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:34:49.110 -07 000000610 INF: =================== Cycle #89 ===================
17-03-18 01:34:50.330 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:34:50.330 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 01:34:50.330 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:34:50.350 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:34:50.350 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 01:34:50.350 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 01:34:50.450 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 4.005817,
17-03-18 01:34:50.560 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:34:50.580 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 01:34:50.580 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 01:34:50.630 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:34:50.650 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 01:34:50.650 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:34:50.750 -07 000000610 INF: =================== Cycle #89, Pumping Reagent IMT (1) ===================
17-03-18 01:34:50.750 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 01:34:50.750 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:34:50.790 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 01:34:50.790 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 01:34:50.790 -07 000000610 INF: =================== Cycle #89, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 01:34:50.920 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 01:34:50.960 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:34:52.270 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 01:34:52.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1405, R2=1459, Total=2864. Warn if over 250 bubbles per interval.
17-03-18 01:34:52.400 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:34:52.430 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:34:52.850 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:34:52.880 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:34:52.880 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 01:34:52.880 -07 000000610 INF: =================== Cycle #89, Pumping Reagent IMT (1) ===================
17-03-18 01:34:53.010 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:34:53.040 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 01:34:53.040 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 01:34:53.170 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:34:53.200 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 01:34:53.200 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 01:34:53.200 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:34:53.330 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:34:53.360 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:34:53.790 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:34:53.820 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:34:53.820 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:34:53.820 -07 000000610 INF: =================== Cycle #89 ===================
17-03-18 01:34:55.040 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:34:55.040 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:34:55.040 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:34:55.060 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 01:34:55.060 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 01:34:55.060 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 01:34:55.290 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:34:55.310 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 01:34:55.310 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 01:34:55.360 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:34:55.380 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:34:55.380 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:34:55.480 -07 000000610 INF: =================== Cycle #89, Pumping Reagent PR2 (3) ===================
17-03-18 01:34:55.480 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 01:34:55.480 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:34:55.510 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 01:34:55.510 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 01:34:55.510 -07 000000610 INF: =================== Cycle #89, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:34:55.640 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 01:34:55.680 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:34:55.810 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 3.99219,
17-03-18 01:34:56.550 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:34:56.580 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:34:56.580 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 01:34:56.580 -07 000000610 INF: =================== Cycle #89, Pumping Reagent PR2 (3) ===================
17-03-18 01:34:56.710 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:34:56.740 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 01:34:56.740 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 01:34:56.870 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:34:56.900 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 01:34:56.900 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 01:34:56.900 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:34:57.030 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:34:57.060 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:34:57.270 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:34:57.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1405, R2=1459, Total=2864. Warn if over 250 bubbles per interval.
17-03-18 01:34:57.490 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:34:57.520 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:34:57.520 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:34:57.520 -07 000000610 INF: =================== Cycle #89 ===================
17-03-18 01:34:57.520 -07 000000610 INF: =================== Cycle #89, Flow Cell Temp 65° ===================
17-03-18 01:34:57.520 -07 000000610 INF: =================== Cycle #89, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 01:34:57.520 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 01:34:57.520 -07 000000625 INF: FPGA: Recv TEC2TEMP 
17-03-18 01:34:57.530 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:34:57.530 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 01:34:57.530 -07 000000569 INF: FPGA: Recv TEC2EN 
17-03-18 01:34:57.540 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:34:57.540 -07 000000610 INF: =================== Cycle #89, Flow Cell Temp 65° ===================
17-03-18 01:34:57.540 -07 000000610 INF: =================== Cycle #89 ===================
17-03-18 01:34:57.540 -07 000000610 INF: WaitCommand(30000) start
17-03-18 01:35:01.170 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 3.951279,
17-03-18 01:35:02.270 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:35:02.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1405, R2=1459, Total=2864. Warn if over 250 bubbles per interval.
17-03-18 01:35:06.530 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 3.939015,
17-03-18 01:35:07.270 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:35:07.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1405, R2=1459, Total=2864. Warn if over 250 bubbles per interval.
17-03-18 01:35:11.890 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 3.990831,
17-03-18 01:35:12.270 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:35:12.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1405, R2=1459, Total=2864. Warn if over 250 bubbles per interval.
17-03-18 01:35:17.250 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 4.004458,
17-03-18 01:35:17.270 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:35:17.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1405, R2=1459, Total=2864. Warn if over 250 bubbles per interval.
17-03-18 01:35:22.270 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:35:22.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1405, R2=1459, Total=2864. Warn if over 250 bubbles per interval.
17-03-18 01:35:22.610 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 4.012614,
17-03-18 01:35:27.270 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:35:27.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1405, R2=1459, Total=2864. Warn if over 250 bubbles per interval.
17-03-18 01:35:27.550 -07 000000610 INF: WaitCommand(30000) end
17-03-18 01:35:27.550 -07 000000610 INF: =================== Cycle #89, Pumping Reagent PR2 (3) ===================
17-03-18 01:35:27.550 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 01:35:27.650 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:35:27.680 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 01:35:27.680 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 01:35:27.680 -07 000000610 INF: =================== Cycle #89, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:35:27.810 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 01:35:27.850 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:35:27.970 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 4.012614,
17-03-18 01:35:28.390 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:35:28.420 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:35:28.420 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 01:35:28.420 -07 000000610 INF: =================== Cycle #89, Pumping Reagent PR2 (3) ===================
17-03-18 01:35:28.550 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:35:28.580 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 01:35:28.580 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 01:35:28.710 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:35:28.740 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 01:35:28.740 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 01:35:28.740 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:35:28.870 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:35:28.900 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:35:29.330 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:35:29.360 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:35:29.360 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:35:29.360 -07 000000610 INF: =================== Cycle #89 ===================
17-03-18 01:35:29.360 -07 000000474 INF: WaitCommand(30000) start
17-03-18 01:35:29.360 -07 000000479 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:35:29.360 -07 000000479 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 01:35:30.580 -07 000000479 INF: AsyncDelayTimer waited 1216ms
17-03-18 01:35:30.580 -07 000000479 INF: LanePump: Xmit /1?\r
17-03-18 01:35:30.610 -07 000000479 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 01:35:30.610 -07 000000479 INF: LanePump: Current Position of Pump is: 1920
17-03-18 01:35:30.740 -07 000000479 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 01:35:30.780 -07 000000479 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:35:32.270 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:35:32.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1405, R2=1459, Total=2864. Warn if over 250 bubbles per interval.
17-03-18 01:35:33.120 -07 000000479 INF: LanePump: Xmit /1Q\r
17-03-18 01:35:33.150 -07 000000479 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:35:33.330 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 3.986717,
17-03-18 01:35:33.570 -07 000000479 INF: LanePump: Xmit /1Q\r
17-03-18 01:35:33.600 -07 000000479 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:35:33.600 -07 000000479 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 01:35:33.600 -07 000000479 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:35:33.600 -07 000000479 INF: ===================  ===================
17-03-18 01:35:37.280 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:35:37.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1405, R2=1459, Total=2864. Warn if over 250 bubbles per interval.
17-03-18 01:35:38.690 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 3.993549,
17-03-18 01:35:42.280 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:35:42.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1405, R2=1459, Total=2864. Warn if over 250 bubbles per interval.
17-03-18 01:35:44.050 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 3.985358,
17-03-18 01:35:47.270 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:35:47.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1405, R2=1459, Total=2864. Warn if over 250 bubbles per interval.
17-03-18 01:35:49.410 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 4.007176,
17-03-18 01:35:52.270 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:35:52.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1405, R2=1459, Total=2864. Warn if over 250 bubbles per interval.
17-03-18 01:35:54.770 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 4.001704,
17-03-18 01:35:57.270 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:35:57.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1405, R2=1459, Total=2864. Warn if over 250 bubbles per interval.
17-03-18 01:35:59.370 -07 000000474 INF: WaitCommand(30000) end
17-03-18 01:35:59.370 -07 000000610 INF: =================== Cycle #89, Flow Cell Temp 22° ===================
17-03-18 01:35:59.370 -07 000000610 INF: =================== Cycle #89, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 01:35:59.650 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 01:35:59.650 -07 000000626 INF: FPGA: Recv TEC2EN 
17-03-18 01:35:59.660 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:35:59.660 -07 000000610 INF: =================== Cycle #89, Flow Cell Temp 22° ===================
17-03-18 01:35:59.660 -07 000000610 INF: =================== Cycle #89 ===================
17-03-18 01:35:59.660 -07 000000610 INF: =================== Cycle #89, Pumping Reagent PR2 (3) ===================
17-03-18 01:35:59.660 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 01:35:59.730 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:35:59.760 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 01:35:59.760 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 01:35:59.760 -07 000000610 INF: =================== Cycle #89, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:35:59.890 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 01:35:59.930 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:36:00.130 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 4.009895,
17-03-18 01:36:02.270 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:36:02.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1405, R2=1459, Total=2864. Warn if over 250 bubbles per interval.
17-03-18 01:36:03.060 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:36:03.090 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:36:03.510 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:36:03.540 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:36:03.960 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:36:03.990 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:36:03.990 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 01:36:03.990 -07 000000610 INF: =================== Cycle #89, Pumping Reagent PR2 (3) ===================
17-03-18 01:36:04.120 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:36:04.150 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:36:04.150 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:36:04.280 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:36:04.310 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:36:04.310 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:36:04.310 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:36:04.440 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:36:04.470 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:36:04.900 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:36:04.930 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:36:04.930 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:36:04.930 -07 000000610 INF: =================== Cycle #89 ===================
17-03-18 01:36:05.490 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 4.000345,
17-03-18 01:36:06.150 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 01:36:06.150 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 01:36:06.150 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:36:06.170 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:36:06.170 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 01:36:06.170 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 01:36:06.320 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:36:06.340 -07 000000610 INF: ReagentValve: Recv 00E2\r
17-03-18 01:36:06.340 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 226 steps, expected 204. Error = 22 steps (10.8%)
17-03-18 01:36:06.390 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:36:06.410 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 01:36:06.410 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:36:06.510 -07 000000610 INF: =================== Cycle #89, Pumping Reagent USM (2) ===================
17-03-18 01:36:06.510 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 01:36:06.510 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:36:06.540 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:36:06.540 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:36:06.540 -07 000000610 INF: =================== Cycle #89, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 01:36:06.670 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 01:36:06.710 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:36:07.270 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 01:36:07.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:36:08.150 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:36:08.180 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:36:08.600 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:36:08.630 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:36:08.630 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 01:36:08.630 -07 000000610 INF: =================== Cycle #89, Pumping Reagent USM (2) ===================
17-03-18 01:36:08.760 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:36:08.790 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:36:08.790 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:36:08.920 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:36:08.950 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:36:08.950 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:36:08.950 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:36:09.080 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:36:09.110 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:36:09.540 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:36:09.570 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:36:09.570 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:36:09.570 -07 000000610 INF: =================== Cycle #89 ===================
17-03-18 01:36:10.790 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 01:36:10.790 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:36:10.790 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:36:11.520 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 01:36:11.520 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 01:36:11.520 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 01:36:11.670 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:36:11.690 -07 000000610 INF: ReagentValve: Recv 00E2\r
17-03-18 01:36:11.690 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 226 steps, expected 204. Error = 22 steps (10.8%)
17-03-18 01:36:11.740 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:36:11.760 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:36:11.760 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:36:11.810 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 4.012614,
17-03-18 01:36:11.860 -07 000000610 INF: =================== Cycle #89, Pumping Reagent PR2 (3) ===================
17-03-18 01:36:11.860 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 01:36:11.860 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:36:11.890 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:36:11.890 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:36:11.890 -07 000000610 INF: =================== Cycle #89, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:36:12.020 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 01:36:12.060 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:36:12.270 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:36:12.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:36:12.930 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:36:12.960 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:36:12.960 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 01:36:12.960 -07 000000610 INF: =================== Cycle #89, Pumping Reagent PR2 (3) ===================
17-03-18 01:36:13.090 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:36:13.120 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:36:13.120 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:36:13.250 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:36:13.280 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:36:13.280 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:36:13.280 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:36:13.410 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:36:13.440 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:36:13.870 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:36:13.900 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:36:13.900 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:36:13.900 -07 000000610 INF: =================== Cycle #89 ===================
17-03-18 01:36:13.900 -07 000000626 INF: WaitCommand(10000) start
17-03-18 01:36:13.900 -07 000000430 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:36:13.900 -07 000000430 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 01:36:15.120 -07 000000430 INF: AsyncDelayTimer waited 1216ms
17-03-18 01:36:15.120 -07 000000430 INF: LanePump: Xmit /1?\r
17-03-18 01:36:15.150 -07 000000430 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:36:15.150 -07 000000430 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:36:15.280 -07 000000430 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 01:36:15.320 -07 000000430 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:36:16.850 -07 000000430 INF: LanePump: Xmit /1Q\r
17-03-18 01:36:16.880 -07 000000430 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:36:17.170 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 4.001704,
17-03-18 01:36:17.270 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:36:17.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:36:17.300 -07 000000430 INF: LanePump: Xmit /1Q\r
17-03-18 01:36:17.330 -07 000000430 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:36:17.330 -07 000000430 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 01:36:17.330 -07 000000430 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:36:17.330 -07 000000430 INF: ===================  ===================
17-03-18 01:36:22.270 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:36:22.270 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:36:22.530 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 3.978563,
17-03-18 01:36:23.910 -07 000000626 INF: WaitCommand(10000) end
17-03-18 01:36:23.910 -07 000000610 INF: =================== Cycle #89, Imaging ===================
17-03-18 01:36:23.910 -07 000000610 INF: Imaging Cycle 89: ScanTilesCommand Cycle 89 time start.
17-03-18 01:36:23.920 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 01:36:23.920 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:36:23.940 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:36:23.940 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 01:36:23.940 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 01:36:24.240 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:36:24.260 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 01:36:24.260 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 01:36:24.310 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:36:24.330 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 01:36:24.330 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:36:24.330 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:36:24.330 -07 000000625 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 01:36:24.330 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:36:24.330 -07 000000625 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 01:36:24.340 -07 000000479 INF: FPGA: Recv EXLED1ON 
17-03-18 01:36:24.340 -07 000000625 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:36:24.340 -07 000000625 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 01:36:24.340 -07 000000474 INF: FPGA: Recv EXLED1ADCR 23084
17-03-18 01:36:24.350 -07 000000625 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:24.350 -07 000000625 INF: RedLED: Using Red data: Photodiode ADC 23084 --> 7.4 mW (old method), or 204.6 mW (new method). Difference = 197.2 mW
17-03-18 01:36:24.350 -07 000000625 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 01:36:24.350 -07 000000444 INF: FPGA: Recv EXLED1OFF 
17-03-18 01:36:24.360 -07 000000625 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:24.360 -07 000000625 INF: RedLED: LED was on for 19 ms
17-03-18 01:36:24.360 -07 000000625 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-18 01:36:24.360 -07 000000625 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 01:36:24.360 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:36:24.360 -07 000000625 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 01:36:24.360 -07 000000474 INF: FPGA: Recv EXLED2ON 
17-03-18 01:36:24.370 -07 000000625 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:36:24.370 -07 000000625 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 01:36:24.370 -07 000000626 INF: FPGA: Recv EXLED1ADCR 2101
17-03-18 01:36:24.380 -07 000000625 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:24.380 -07 000000625 INF: GreenLED: Using Green data: Photodiode ADC 2101 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.6 mW
17-03-18 01:36:24.380 -07 000000625 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 01:36:24.380 -07 000000479 INF: FPGA: Recv EXLED2OFF 
17-03-18 01:36:24.390 -07 000000625 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:24.390 -07 000000625 INF: GreenLED: LED was on for 20 ms
17-03-18 01:36:24.390 -07 000000625 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 01:36:24.390 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 01:36:24.390 -07 000000569 INF: FPGA: Recv EMCUR 
17-03-18 01:36:24.400 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:36:24.400 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 01:36:24.900 -07 000000625 INF: FPGA: Recv EMOUT
17-03-18 01:36:24.900 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 01:36:24.900 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 01:36:24.900 -07 000000629 INF: FPGA: Recv EMCUR 
17-03-18 01:36:24.910 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:36:24.910 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:36:24.910 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38427734375, Z-Position -0.126548413576502. ------
17-03-18 01:36:24.910 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:36:24.910 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17865 mm
17-03-18 01:36:24.910 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:36:24.910 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 01:36:24.910 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 39026, sync = True, waitForSettling = False)
17-03-18 01:36:24.910 -07 000000618 INF: Z Motor: Moving to -0.178650 mm, started at -0.126548 mm, distance = -52.10 um
17-03-18 01:36:24.910 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:36:24.920 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:36:24.920 -07 000000618 INF: FPGA: Xmit ZDACW 39026\n [Z Motor]
17-03-18 01:36:24.920 -07 000000626 INF: Y Motor: Moving to 59.9126 mm, started at 75.3843 mm, delta = -15.4717 mm
17-03-18 01:36:24.920 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 01:36:24.930 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:36:24.930 -07 000000618 INF: FPGA: 'ZDACW 39026' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:36:24.940 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:36:24.940 -07 000000447 INF: FPGA: Recv YRDPOS 154387
17-03-18 01:36:24.950 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:36:24.950 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:36:24.950 -07 000000626 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:36:24.950 -07 000000626 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 01:36:24.950 -07 000000626 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 01:36:24.950 -07 000000479 INF: FPGA: Recv ZDACR 39026
17-03-18 01:36:24.960 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:36:24.960 -07 000000618 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 01:36:24.960 -07 000000626 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 01:36:25.910 -07 000000430 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:36:25.910 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 970 ms to get response, and 990 ms overall
17-03-18 01:36:26.640 -07 000000430 INF: FPGA: Recv YMVTO 122703 24782
17-03-18 01:36:26.640 -07 000000626 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1677 ms to get response, and 1695 ms overall
17-03-18 01:36:26.640 -07 000000626 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 01:36:26.640 -07 000000626 INF: Y Motor: To move from 75.384 to 59.913 (-15.472 mm) should take 24755 steps, but required 24782 steps (15.489 mm). Slippage = 0.017 mm (0.00%).
17-03-18 01:36:26.640 -07 000000626 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1695 ms, distance = 15.472 mm, average velocity = 9.128 mm/sec
17-03-18 01:36:27.270 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:36:27.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:36:27.890 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 3.979922,
17-03-18 01:36:29.490 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:36:29.490 -07 000000455 INF: FPGA: Recv YRDPOS 122697
17-03-18 01:36:29.500 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:36:29.500 -07 000000626 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:36:29.520 -07 000000626 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:36:29.520 -07 000000626 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 01:36:29.520 -07 000000626 INF: Y Motor: Moved to 59.9106 after 4608 ms
17-03-18 01:36:29.530 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178650 mm (DAC = 39026)
17-03-18 01:36:29.530 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:29.530 -07 000000447 INF: FPGA: Recv ZSGSRD 37098
17-03-18 01:36:29.540 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:36:29.540 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:29.540 -07 000000629 INF: FPGA: Recv ZSGSRD 37102
17-03-18 01:36:29.550 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:29.550 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:29.550 -07 000000447 INF: FPGA: Recv ZSGSRD 37095
17-03-18 01:36:29.560 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:29.560 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:29.560 -07 000000629 INF: FPGA: Recv ZSGSRD 37096
17-03-18 01:36:29.570 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:29.570 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:29.570 -07 000000625 INF: FPGA: Recv ZSGSRD 37101
17-03-18 01:36:29.580 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:36:29.580 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:29.580 -07 000000455 INF: FPGA: Recv ZSGSRD 37101
17-03-18 01:36:29.590 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:29.590 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:29.590 -07 000000629 INF: FPGA: Recv ZSGSRD 37101
17-03-18 01:36:29.600 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:29.600 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:29.600 -07 000000626 INF: FPGA: Recv ZSGSRD 37091
17-03-18 01:36:29.610 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:29.610 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:29.610 -07 000000447 INF: FPGA: Recv ZSGSRD 37100
17-03-18 01:36:29.620 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:29.620 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:29.620 -07 000000626 INF: FPGA: Recv ZSGSRD 37099
17-03-18 01:36:29.630 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:29.630 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:36:29.630 -07 000000447 INF: FPGA: Recv ZPIEZORD 33373
17-03-18 01:36:29.640 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:29.640 -07 000000569 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.955 V. Piezo Error = -8.3 V.
17-03-18 01:36:29.640 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.6 um, Read 10 ADC samples: Avg = 37098 (-177.8 uncal um), Error = 0.9 uncal um, Median = 37100 (-177.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37091 (-177.7 uncal um), Max = 37102 (-177.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:36:29.640 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37098, posNoise = 4, negNoise = 7
17-03-18 01:36:29.640 -07 000000569 INF: Z Motor: After move to -0.178650, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:36:29.640 -07 000000569 INF: Z Motor: Settle wait time = 4613 ms, measure time = 107 ms (allowed 150 ms), total time = 4720 ms
17-03-18 01:36:29.640 -07 000000569 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 01:36:29.690 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4773 ms
17-03-18 01:36:29.690 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:36:29.690 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:36:29.690 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:36:29.690 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:36:29.690 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:36:29.690 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:36:29.690 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:36:29.690 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:36:29.690 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 01:36:29.720 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 01:36:29.720 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:36:29.720 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 01:36:29.720 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:36:29.740 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:36:29.740 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 44 ms.
17-03-18 01:36:29.740 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:36:29.780 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:36:30.080 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:36:30.080 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:36:30.080 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:36:30.090 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1439269080, 0x0, 559484976) start.
17-03-18 01:36:30.120 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:36:30.120 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 01:36:30.120 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 386 ms overall
17-03-18 01:36:30.210 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1439269080, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:36:30.210 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:30.210 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:36:30.210 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:36:30.320 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:36:30.320 -07 000000444 INF: Image SNR check: start
17-03-18 01:36:30.320 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:36:30.330 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:36:30.330 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:36:30.330 -07 000000444 INF: Image SNR check: pass  [peak (Max-Min)=205.28]
17-03-18 01:36:30.330 -07 000000444 INF: Autofocus start
17-03-18 01:36:30.330 -07 000000444 INF: MeasureProfile start
17-03-18 01:36:30.350 -07 000000444 INF: MeasureProfile done
17-03-18 01:36:30.350 -07 000000444 INF: X=48  Z correction [um]=0.1739867
17-03-18 01:36:30.350 -07 000000444 INF: Autofocus finished
17-03-18 01:36:30.530 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:36:30.530 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:36:30.530 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.178648774046183. ----------
17-03-18 01:36:30.530 -07 000000610 INF: Cycle	89	Tile	1	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:36:30.540 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37576, sync = True, waitForSettling = True)
17-03-18 01:36:30.540 -07 000000610 INF: Z Motor: Moving to -0.172012 mm, started at -0.178649 mm, distance = 6.64 um
17-03-18 01:36:30.540 -07 000000610 INF: FPGA: Xmit ZDACW 37576\n [Z Motor]
17-03-18 01:36:30.540 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 01:36:30.550 -07 000000610 INF: FPGA: 'ZDACW 37576' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:36:30.550 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:36:30.550 -07 000000474 INF: FPGA: Recv ZDACR 37576
17-03-18 01:36:30.560 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:30.560 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:36:30.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:30.710 -07 000000626 INF: FPGA: Recv ZSGSRD 36066
17-03-18 01:36:30.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:36:30.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:30.720 -07 000000474 INF: FPGA: Recv ZSGSRD 36071
17-03-18 01:36:30.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:30.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:30.730 -07 000000569 INF: FPGA: Recv ZSGSRD 36059
17-03-18 01:36:30.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:30.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:30.740 -07 000000625 INF: FPGA: Recv ZSGSRD 36064
17-03-18 01:36:30.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:30.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:30.750 -07 000000444 INF: FPGA: Recv ZSGSRD 36074
17-03-18 01:36:30.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:30.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:30.760 -07 000000474 INF: FPGA: Recv ZSGSRD 36061
17-03-18 01:36:30.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:30.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:30.770 -07 000000626 INF: FPGA: Recv ZSGSRD 36068
17-03-18 01:36:30.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:30.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:30.780 -07 000000569 INF: FPGA: Recv ZSGSRD 36065
17-03-18 01:36:30.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:30.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:30.790 -07 000000455 INF: FPGA: Recv ZSGSRD 36068
17-03-18 01:36:30.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:30.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:30.800 -07 000000625 INF: FPGA: Recv ZSGSRD 36071
17-03-18 01:36:30.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:30.810 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:36:30.810 -07 000000474 INF: FPGA: Recv ZPIEZORD 31960
17-03-18 01:36:30.820 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:30.820 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.734 V. Piezo Error = -9.1 V.
17-03-18 01:36:30.820 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36067 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36067 (-171.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36059 (-171.1 uncal um), Max = 36074 (-171.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:36:30.820 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36067, posNoise = 7, negNoise = 8
17-03-18 01:36:30.820 -07 000000610 INF: Z Motor: After move to -0.172012, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:36:30.820 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:36:30.820 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:36:30.820 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:36:30.820 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:36:30.820 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:36:30.820 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:36:30.820 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:36:30.820 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:36:30.820 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:36:30.820 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:36:30.820 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 01:36:30.820 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:36:30.820 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:36:30.830 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:36:30.830 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:36:30.840 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 01:36:30.840 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 01:36:30.850 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 01:36:30.850 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:36:30.850 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:36:30.850 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:36:30.860 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:36:30.860 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 34 ms.
17-03-18 01:36:30.860 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37753 150\n [Camera]
17-03-18 01:36:31.060 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:36:31.450 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:36:31.450 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:36:31.450 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:36:31.450 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:36:31.450 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:36:31.450 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:36:31.460 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:36:31.460 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1458350464, 0x0, 391868352) start.
17-03-18 01:36:31.590 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:36:31.590 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) start.
17-03-18 01:36:31.650 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37753 779
17-03-18 01:36:31.790 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:36:31.850 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1458350464, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:36:31.850 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:36:31.850 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:31.860 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:36:31.860 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:36:31.980 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 01:36:31.980 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:36:31.980 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:31.980 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:36:31.980 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:36:31.980 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:36:31.980 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:36:31.980 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:36:31.980 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:36:31.980 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:36:31.990 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:36:31.990 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:36:31.990 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 536 ms.
17-03-18 01:36:31.990 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:36:31.990 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:36:32.170 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:36:32.170 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:36:32.170 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37753 150' command took 2 ms to send, 1306 ms to get response, and 1314 ms overall
17-03-18 01:36:32.170 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:36:32.170 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.172025411328027. ------
17-03-18 01:36:32.180 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:36:32.390 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:36:32.390 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:36:32.390 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:32.400 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:36:32.400 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 01:36:32.400 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:36:32.400 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:36:32.400 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:32.400 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:36:32.410 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-18 01:36:32.410 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17805 mm
17-03-18 01:36:32.410 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:36:32.420 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:36:32.420 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:36:32.420 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 230 ms to get response, and 238 ms overall
17-03-18 01:36:32.420 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:36:32.420 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:36:32.420 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 01:36:32.420 -07 000000444 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-18 01:36:32.430 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:36:33.140 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38894, sync = True, waitForSettling = False)
17-03-18 01:36:33.140 -07 000000618 INF: Z Motor: Moving to -0.178045 mm, started at -0.172025 mm, distance = -6.02 um
17-03-18 01:36:33.140 -07 000000618 INF: FPGA: Xmit ZDACW 38894\n [Z Motor]
17-03-18 01:36:33.670 -07 000000430 INF: FPGA: Recv YRDPOS 122697
17-03-18 01:36:33.670 -07 000000430 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:36:33.670 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 01:36:33.670 -07 000000618 INF: FPGA: 'ZDACW 38894' command took 0 ms to send, 520 ms to get response, and 529 ms overall
17-03-18 01:36:33.670 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:36:33.670 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1230 ms to get response, and 1248 ms overall
17-03-18 01:36:33.670 -07 000000444 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:36:33.670 -07 000000444 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:36:33.670 -07 000000444 INF: Y Motor: Moving 1331 steps2
17-03-18 01:36:33.670 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1240 ms to get response, and 1249 ms overall
17-03-18 01:36:33.670 -07 000000430 INF: FPGA: Recv ZDACR 38894
17-03-18 01:36:33.680 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:36:33.680 -07 000000618 INF: Z Motor: MoveAbsStepped took 538 ms (did NOT wait for settling yet))
17-03-18 01:36:33.680 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:36:33.980 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 3.973092,
17-03-18 01:36:34.050 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 01:36:34.050 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 01:36:34.090 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:36:34.090 -07 000000474 INF: FPGA: Recv YRDPOS 124381
17-03-18 01:36:34.100 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:36:34.100 -07 000000444 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:36:34.100 -07 000000444 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 01:36:34.100 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.832 mm, average velocity = 2.155 mm/sec
17-03-18 01:36:35.050 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:36:35.050 -07 000000618 INF: FPGA: Recv YRDPOS 124381
17-03-18 01:36:35.060 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:36:35.060 -07 000000444 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:36:35.080 -07 000000444 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:36:35.080 -07 000000444 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:36:35.080 -07 000000444 INF: Y Motor: Moved to 60.7329 after 2666 ms (table move)
17-03-18 01:36:35.090 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178045 mm (DAC = 38894)
17-03-18 01:36:35.090 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:35.090 -07 000000479 INF: FPGA: Recv ZSGSRD 37015
17-03-18 01:36:35.100 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:36:35.100 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:35.100 -07 000000447 INF: FPGA: Recv ZSGSRD 37001
17-03-18 01:36:35.110 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:35.110 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:35.110 -07 000000479 INF: FPGA: Recv ZSGSRD 37004
17-03-18 01:36:35.120 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:35.120 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:35.120 -07 000000618 INF: FPGA: Recv ZSGSRD 37007
17-03-18 01:36:35.130 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:35.130 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:35.130 -07 000000629 INF: FPGA: Recv ZSGSRD 37011
17-03-18 01:36:35.140 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:35.140 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:35.140 -07 000000474 INF: FPGA: Recv ZSGSRD 37006
17-03-18 01:36:35.150 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:35.150 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:35.150 -07 000000629 INF: FPGA: Recv ZSGSRD 37003
17-03-18 01:36:35.160 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:35.160 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:35.160 -07 000000444 INF: FPGA: Recv ZSGSRD 37001
17-03-18 01:36:35.170 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:35.170 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:35.170 -07 000000629 INF: FPGA: Recv ZSGSRD 37009
17-03-18 01:36:35.180 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:35.180 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:35.180 -07 000000444 INF: FPGA: Recv ZSGSRD 37006
17-03-18 01:36:35.190 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:35.190 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:36:35.190 -07 000000474 INF: FPGA: Recv ZPIEZORD 33215
17-03-18 01:36:35.200 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:35.200 -07 000000569 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.935 V. Piezo Error = -8.4 V.
17-03-18 01:36:35.200 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.0 um, Read 10 ADC samples: Avg = 37006 (-177.2 uncal um), Error = 0.9 uncal um, Median = 37006 (-177.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 37001 (-177.1 uncal um), Max = 37015 (-177.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:36:35.200 -07 000000569 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37006, posNoise = 9, negNoise = 5
17-03-18 01:36:35.200 -07 000000569 INF: Z Motor: After move to -0.178045, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:36:35.200 -07 000000569 INF: Z Motor: Settle wait time = 1951 ms, measure time = 108 ms (allowed 150 ms), total time = 2059 ms
17-03-18 01:36:35.200 -07 000000569 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:36:35.250 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2838 ms
17-03-18 01:36:35.250 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:36:35.250 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:36:35.250 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:36:35.250 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:36:35.250 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:36:35.250 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:36:35.250 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:36:35.250 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:36:35.250 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:36:35.260 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:36:35.260 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:36:35.270 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:36:35.270 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 01:36:35.270 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:36:35.320 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:36:35.620 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:36:35.620 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:36:35.620 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:36:35.620 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1425142296, 0x0, 559484976) start.
17-03-18 01:36:35.660 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:36:35.660 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 01:36:35.660 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 385 ms overall
17-03-18 01:36:35.750 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1425142296, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:36:35.750 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:35.750 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:36:35.750 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:36:35.760 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:36:35.760 -07 000000629 INF: Autofocus start
17-03-18 01:36:35.760 -07 000000629 INF: MeasureProfile start
17-03-18 01:36:35.760 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:36:35.770 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:36:35.770 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:36:35.770 -07 000000629 INF: MeasureProfile done
17-03-18 01:36:35.770 -07 000000629 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 01:36:35.770 -07 000000629 INF: Autofocus finished
17-03-18 01:36:35.970 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:36:35.970 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:36:35.970 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.178057746529141. ----------
17-03-18 01:36:35.970 -07 000000610 INF: Cycle	89	Tile	2	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:36:35.980 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37374, sync = True, waitForSettling = True)
17-03-18 01:36:35.980 -07 000000610 INF: Z Motor: Moving to -0.171087 mm, started at -0.178058 mm, distance = 6.97 um
17-03-18 01:36:35.980 -07 000000610 INF: FPGA: Xmit ZDACW 37374\n [Z Motor]
17-03-18 01:36:35.980 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:36:35.990 -07 000000610 INF: FPGA: 'ZDACW 37374' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:35.990 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:36:35.990 -07 000000629 INF: FPGA: Recv ZDACR 37374
17-03-18 01:36:36.000 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:36.000 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:36:36.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:36.150 -07 000000430 INF: FPGA: Recv ZSGSRD 35921
17-03-18 01:36:36.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:36:36.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:36.160 -07 000000479 INF: FPGA: Recv ZSGSRD 35931
17-03-18 01:36:36.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:36.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:36.170 -07 000000444 INF: FPGA: Recv ZSGSRD 35925
17-03-18 01:36:36.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:36.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:36.180 -07 000000479 INF: FPGA: Recv ZSGSRD 35921
17-03-18 01:36:36.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:36.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:36.190 -07 000000444 INF: FPGA: Recv ZSGSRD 35921
17-03-18 01:36:36.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:36.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:36.200 -07 000000569 INF: FPGA: Recv ZSGSRD 35923
17-03-18 01:36:36.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:36.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:36.210 -07 000000629 INF: FPGA: Recv ZSGSRD 35924
17-03-18 01:36:36.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:36.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:36.220 -07 000000444 INF: FPGA: Recv ZSGSRD 35921
17-03-18 01:36:36.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:36.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:36.230 -07 000000474 INF: FPGA: Recv ZSGSRD 35919
17-03-18 01:36:36.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:36.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:36.240 -07 000000444 INF: FPGA: Recv ZSGSRD 35929
17-03-18 01:36:36.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:36.250 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:36:36.250 -07 000000444 INF: FPGA: Recv ZPIEZORD 31770
17-03-18 01:36:36.260 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:36.260 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.703 V. Piezo Error = -9.2 V.
17-03-18 01:36:36.260 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35924 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35922 (-170.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35919 (-170.2 uncal um), Max = 35931 (-170.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:36:36.260 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35924, posNoise = 7, negNoise = 5
17-03-18 01:36:36.260 -07 000000610 INF: Z Motor: After move to -0.171087, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:36:36.260 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:36:36.260 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:36:36.260 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:36:36.260 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:36:36.260 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:36:36.260 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:36:36.260 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:36:36.260 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:36:36.260 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:36:36.260 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:36:36.260 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:36:36.260 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:36:36.260 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:36:36.270 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:36:36.270 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:36:36.270 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:36:36.270 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:36:36.280 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:36:36.280 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:36:36.280 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:36:36.280 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:36:36.290 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37551 150\n [Camera]
17-03-18 01:36:36.490 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:36:36.880 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:36:36.880 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:36:36.880 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:36:36.880 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:36:36.880 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 01:36:36.880 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:36:36.880 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:36:36.880 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:36:36.880 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:36:36.880 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 01:36:37.070 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37551 776
17-03-18 01:36:37.220 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:36:37.270 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:36:37.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:36:37.280 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:36:37.280 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:36:37.280 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:37.280 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:36:37.280 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:36:37.280 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:37.280 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:36:37.280 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:36:37.280 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:36:37.290 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:36:37.410 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:36:37.410 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:36:37.410 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:36:37.410 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:36:37.410 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:36:37.410 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:36:37.410 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:36:37.410 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:36:37.540 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:36:37.540 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 01:36:37.600 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:36:37.600 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:36:37.600 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37551 150' command took 2 ms to send, 1304 ms to get response, and 1314 ms overall
17-03-18 01:36:37.600 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.171675
17-03-18 01:36:37.600 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17167 mm
17-03-18 01:36:37.600 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:36:37.600 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 01:36:37.600 -07 000000618 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-18 01:36:37.600 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 37502, sync = True, waitForSettling = False)
17-03-18 01:36:37.600 -07 000000479 INF: Z Motor: Moving to -0.171673 mm, started at -0.171107 mm, distance = -0.57 um
17-03-18 01:36:37.610 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:36:37.610 -07 000000474 INF: FPGA: Recv YRDPOS 124382
17-03-18 01:36:37.620 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:36:37.620 -07 000000618 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:36:37.620 -07 000000479 INF: FPGA: Xmit ZDACW 37502\n [Z Motor]
17-03-18 01:36:37.620 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:36:37.620 -07 000000618 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:36:37.620 -07 000000618 INF: Y Motor: Moving 1343 steps-20
17-03-18 01:36:37.630 -07 000000479 INF: FPGA: 'ZDACW 37502' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:36:37.630 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:36:37.640 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:36:37.640 -07 000000474 INF: FPGA: Recv ZDACR 37502
17-03-18 01:36:37.650 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:36:37.650 -07 000000479 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 01:36:37.800 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 01:36:37.800 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 01:36:37.800 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:37.810 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:36:37.810 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:36:37.910 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 01:36:37.910 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 01:36:37.910 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:37.920 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:36:37.920 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 510 ms.
17-03-18 01:36:38.000 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 01:36:38.000 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-18 01:36:38.050 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:36:38.050 -07 000000569 INF: FPGA: Recv YRDPOS 126082
17-03-18 01:36:38.060 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:36:38.060 -07 000000618 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:36:38.060 -07 000000618 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 01:36:38.060 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.840 mm, average velocity = 2.204 mm/sec
17-03-18 01:36:39.010 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:36:39.010 -07 000000474 INF: FPGA: Recv YRDPOS 126083
17-03-18 01:36:39.020 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:36:39.020 -07 000000618 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:36:39.060 -07 000000618 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:36:39.060 -07 000000618 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:36:39.060 -07 000000618 INF: Y Motor: Moved to 61.5640 after 1451 ms (table move)
17-03-18 01:36:39.060 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171673 mm (DAC = 37502)
17-03-18 01:36:39.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:39.060 -07 000000569 INF: FPGA: Recv ZSGSRD 36015
17-03-18 01:36:39.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:36:39.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:39.070 -07 000000479 INF: FPGA: Recv ZSGSRD 36011
17-03-18 01:36:39.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:39.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:39.080 -07 000000479 INF: FPGA: Recv ZSGSRD 36020
17-03-18 01:36:39.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:39.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:39.090 -07 000000479 INF: FPGA: Recv ZSGSRD 36014
17-03-18 01:36:39.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:39.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:39.100 -07 000000474 INF: FPGA: Recv ZSGSRD 36012
17-03-18 01:36:39.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:39.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:39.110 -07 000000569 INF: FPGA: Recv ZSGSRD 36014
17-03-18 01:36:39.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:39.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:39.120 -07 000000618 INF: FPGA: Recv ZSGSRD 36010
17-03-18 01:36:39.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:39.130 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:39.130 -07 000000474 INF: FPGA: Recv ZSGSRD 36009
17-03-18 01:36:39.140 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:39.140 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:39.140 -07 000000569 INF: FPGA: Recv ZSGSRD 36013
17-03-18 01:36:39.150 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:39.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:39.150 -07 000000479 INF: FPGA: Recv ZSGSRD 36017
17-03-18 01:36:39.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:39.160 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:36:39.160 -07 000000430 INF: FPGA: Recv ZPIEZORD 31880
17-03-18 01:36:39.170 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:39.170 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.722 V. Piezo Error = -9.1 V.
17-03-18 01:36:39.170 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36014 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36014 (-170.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36009 (-170.8 uncal um), Max = 36020 (-170.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:36:39.170 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36014, posNoise = 6, negNoise = 5
17-03-18 01:36:39.170 -07 000000610 INF: Z Motor: After move to -0.171673, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:36:39.170 -07 000000610 INF: Z Motor: Settle wait time = 1453 ms, measure time = 107 ms (allowed 150 ms), total time = 1560 ms
17-03-18 01:36:39.170 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 01:36:39.220 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 01:36:39.220 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:36:39.220 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.171684928084514. ----------
17-03-18 01:36:39.220 -07 000000610 INF: Cycle	89	Tile	3	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:36:39.220 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37326, sync = True, waitForSettling = True)
17-03-18 01:36:39.220 -07 000000610 INF: Z Motor: Moving to -0.170867 mm, started at -0.171685 mm, distance = 0.82 um
17-03-18 01:36:39.220 -07 000000610 INF: FPGA: Xmit ZDACW 37326\n [Z Motor]
17-03-18 01:36:39.230 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:36:39.230 -07 000000610 INF: FPGA: 'ZDACW 37326' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:36:39.230 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:36:39.230 -07 000000430 INF: FPGA: Recv ZDACR 37326
17-03-18 01:36:39.240 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:39.240 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:36:39.340 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 4.004458,
17-03-18 01:36:39.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:39.390 -07 000000626 INF: FPGA: Recv ZSGSRD 35888
17-03-18 01:36:39.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:36:39.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:39.400 -07 000000474 INF: FPGA: Recv ZSGSRD 35895
17-03-18 01:36:39.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:39.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:39.410 -07 000000430 INF: FPGA: Recv ZSGSRD 35890
17-03-18 01:36:39.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:39.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:39.420 -07 000000625 INF: FPGA: Recv ZSGSRD 35885
17-03-18 01:36:39.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:36:39.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:39.430 -07 000000479 INF: FPGA: Recv ZSGSRD 35891
17-03-18 01:36:39.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:39.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:39.440 -07 000000474 INF: FPGA: Recv ZSGSRD 35885
17-03-18 01:36:39.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:39.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:39.450 -07 000000479 INF: FPGA: Recv ZSGSRD 35891
17-03-18 01:36:39.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:39.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:39.460 -07 000000618 INF: FPGA: Recv ZSGSRD 35885
17-03-18 01:36:39.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:39.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:39.470 -07 000000569 INF: FPGA: Recv ZSGSRD 35887
17-03-18 01:36:39.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:39.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:39.480 -07 000000430 INF: FPGA: Recv ZSGSRD 35893
17-03-18 01:36:39.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:39.490 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:36:39.490 -07 000000479 INF: FPGA: Recv ZPIEZORD 31692
17-03-18 01:36:39.500 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:39.500 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.696 V. Piezo Error = -9.3 V.
17-03-18 01:36:39.500 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35889 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35889 (-170.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35885 (-170.0 uncal um), Max = 35895 (-170.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:36:39.500 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35889, posNoise = 6, negNoise = 4
17-03-18 01:36:39.500 -07 000000610 INF: Z Motor: After move to -0.170867, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:36:39.500 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 01:36:39.500 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:36:39.500 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:36:39.500 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:36:39.500 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:36:39.500 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:36:39.500 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:36:39.500 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:36:39.500 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:36:39.500 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:36:39.500 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:36:39.500 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:36:39.500 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:36:39.510 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:36:39.510 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:36:39.510 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:36:39.510 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:36:39.520 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:36:39.520 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:36:39.520 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:36:39.520 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:36:39.530 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37502 150\n [Camera]
17-03-18 01:36:39.730 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 01:36:40.120 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:36:40.120 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:36:40.120 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:36:40.120 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:36:40.120 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:36:40.120 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:36:40.120 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:36:40.120 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) start.
17-03-18 01:36:40.130 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:36:40.130 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:36:40.310 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37502 776
17-03-18 01:36:40.460 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:36:40.520 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:36:40.520 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:36:40.520 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:40.520 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:36:40.520 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:36:40.520 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:40.520 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:36:40.530 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:36:40.530 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:36:40.530 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 01:36:40.650 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:36:40.650 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:36:40.650 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:36:40.650 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:36:40.650 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-18 01:36:40.650 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:36:40.650 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:36:40.650 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:36:40.650 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:36:40.650 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) start.
17-03-18 01:36:40.840 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:36:40.840 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:36:40.840 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37502 150' command took 2 ms to send, 1304 ms to get response, and 1313 ms overall
17-03-18 01:36:40.840 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.171140
17-03-18 01:36:40.840 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17114 mm
17-03-18 01:36:40.840 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:36:40.960 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 01:36:40.960 -07 000000618 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-18 01:36:40.960 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 37386, sync = True, waitForSettling = False)
17-03-18 01:36:40.960 -07 000000474 INF: Z Motor: Moving to -0.171142 mm, started at -0.170882 mm, distance = -0.26 um
17-03-18 01:36:40.960 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:36:40.960 -07 000000444 INF: FPGA: Recv YRDPOS 126083
17-03-18 01:36:40.970 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:36:40.970 -07 000000618 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:36:40.970 -07 000000618 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:36:40.970 -07 000000618 INF: Y Motor: Moving 1342 steps-19
17-03-18 01:36:40.970 -07 000000474 INF: FPGA: Xmit ZDACW 37386\n [Z Motor]
17-03-18 01:36:40.970 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 01:36:40.980 -07 000000474 INF: FPGA: 'ZDACW 37386' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:36:40.980 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:36:40.980 -07 000000625 INF: FPGA: Recv ZDACR 37386
17-03-18 01:36:40.990 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:36:40.990 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:40.990 -07 000000474 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-18 01:36:41.040 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 01:36:41.040 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 01:36:41.040 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:41.040 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 01:36:41.040 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:36:41.040 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:41.050 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:36:41.050 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:36:41.050 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:36:41.050 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:36:41.360 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 01:36:41.360 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:36:41.410 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:36:41.410 -07 000000455 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:36:41.420 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:36:41.420 -07 000000618 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:36:41.420 -07 000000618 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 01:36:41.420 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.112 mm/sec
17-03-18 01:36:42.280 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:36:42.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:36:42.370 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:36:42.370 -07 000000479 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:36:42.380 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:36:42.380 -07 000000618 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:36:42.400 -07 000000618 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:36:42.400 -07 000000618 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:36:42.400 -07 000000618 INF: Y Motor: Moved to 62.3955 after 1443 ms (table move)
17-03-18 01:36:42.400 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171142 mm (DAC = 37386)
17-03-18 01:36:42.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:42.410 -07 000000430 INF: FPGA: Recv ZSGSRD 35934
17-03-18 01:36:42.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:36:42.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:42.410 -07 000000479 INF: FPGA: Recv ZSGSRD 35928
17-03-18 01:36:42.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:36:42.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:42.420 -07 000000629 INF: FPGA: Recv ZSGSRD 35937
17-03-18 01:36:42.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:42.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:42.430 -07 000000479 INF: FPGA: Recv ZSGSRD 35935
17-03-18 01:36:42.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:42.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:42.440 -07 000000479 INF: FPGA: Recv ZSGSRD 35930
17-03-18 01:36:42.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:42.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:42.450 -07 000000618 INF: FPGA: Recv ZSGSRD 35935
17-03-18 01:36:42.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:42.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:42.460 -07 000000629 INF: FPGA: Recv ZSGSRD 35929
17-03-18 01:36:42.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:42.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:42.470 -07 000000629 INF: FPGA: Recv ZSGSRD 35932
17-03-18 01:36:42.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:42.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:42.490 -07 000000479 INF: FPGA: Recv ZSGSRD 35933
17-03-18 01:36:42.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:36:42.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:42.500 -07 000000618 INF: FPGA: Recv ZSGSRD 35939
17-03-18 01:36:42.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:42.520 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:36:42.520 -07 000000430 INF: FPGA: Recv ZPIEZORD 31785
17-03-18 01:36:42.530 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:36:42.530 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.705 V. Piezo Error = -9.1 V.
17-03-18 01:36:42.530 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35933 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35934 (-170.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35928 (-170.3 uncal um), Max = 35939 (-170.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:36:42.530 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35933, posNoise = 6, negNoise = 5
17-03-18 01:36:42.530 -07 000000610 INF: Z Motor: After move to -0.171142, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:36:42.530 -07 000000610 INF: Z Motor: Settle wait time = 1446 ms, measure time = 122 ms (allowed 150 ms), total time = 1568 ms
17-03-18 01:36:42.530 -07 000000610 INF: Z Motor: Waiting extra 28 ms after reading position to reach expected total of 150 ms
17-03-18 01:36:42.560 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1713 ms
17-03-18 01:36:42.560 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:36:42.560 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.171164566901031. ----------
17-03-18 01:36:42.560 -07 000000610 INF: Cycle	89	Tile	4	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:36:42.560 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37209, sync = True, waitForSettling = True)
17-03-18 01:36:42.560 -07 000000610 INF: Z Motor: Moving to -0.170332 mm, started at -0.171165 mm, distance = 0.83 um
17-03-18 01:36:42.560 -07 000000610 INF: FPGA: Xmit ZDACW 37209\n [Z Motor]
17-03-18 01:36:42.560 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 01:36:42.570 -07 000000610 INF: FPGA: 'ZDACW 37209' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:36:42.570 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:36:42.570 -07 000000438 INF: FPGA: Recv ZDACR 37209
17-03-18 01:36:42.580 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:42.580 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:36:42.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:42.730 -07 000000438 INF: FPGA: Recv ZSGSRD 35807
17-03-18 01:36:42.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:36:42.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:42.740 -07 000000430 INF: FPGA: Recv ZSGSRD 35808
17-03-18 01:36:42.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:42.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:42.750 -07 000000479 INF: FPGA: Recv ZSGSRD 35805
17-03-18 01:36:42.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:42.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:42.760 -07 000000629 INF: FPGA: Recv ZSGSRD 35810
17-03-18 01:36:42.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:42.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:42.770 -07 000000438 INF: FPGA: Recv ZSGSRD 35801
17-03-18 01:36:42.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:42.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:42.780 -07 000000430 INF: FPGA: Recv ZSGSRD 35803
17-03-18 01:36:42.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:42.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:42.790 -07 000000438 INF: FPGA: Recv ZSGSRD 35806
17-03-18 01:36:42.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:42.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:42.800 -07 000000430 INF: FPGA: Recv ZSGSRD 35807
17-03-18 01:36:42.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:42.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:42.810 -07 000000438 INF: FPGA: Recv ZSGSRD 35807
17-03-18 01:36:42.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:42.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:42.820 -07 000000479 INF: FPGA: Recv ZSGSRD 35800
17-03-18 01:36:42.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:42.830 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:36:42.830 -07 000000629 INF: FPGA: Recv ZPIEZORD 31616
17-03-18 01:36:42.840 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:42.840 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.678 V. Piezo Error = -9.2 V.
17-03-18 01:36:42.840 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35805 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35806 (-169.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35800 (-169.4 uncal um), Max = 35810 (-169.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:36:42.840 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35805, posNoise = 5, negNoise = 5
17-03-18 01:36:42.840 -07 000000610 INF: Z Motor: After move to -0.170332, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:36:42.840 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 01:36:42.840 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:36:42.840 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:36:42.840 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:36:42.840 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:36:42.840 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:36:42.840 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:36:42.840 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:36:42.840 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:36:42.840 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:36:42.840 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:36:42.840 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:36:42.840 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:36:42.840 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:36:42.840 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:36:42.850 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:36:42.850 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:36:42.860 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:36:42.860 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:36:42.860 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:36:42.860 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:36:42.860 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37386 150\n [Camera]
17-03-18 01:36:43.060 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:36:43.450 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:36:43.460 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:36:43.460 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:36:43.460 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:36:43.460 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:36:43.460 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:36:43.460 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:36:43.460 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:36:43.460 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:36:43.460 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:36:43.650 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37386 776
17-03-18 01:36:43.800 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:36:43.830 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 01:36:43.830 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 01:36:43.830 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:43.840 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 01:36:43.840 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 01:36:43.840 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:43.840 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:36:43.840 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:36:43.840 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 01:36:43.850 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 01:36:43.990 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:36:43.990 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:36:43.990 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:36:43.990 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:36:43.990 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:36:43.990 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:36:43.990 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:36:43.990 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-18 01:36:43.990 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:36:43.990 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) start.
17-03-18 01:36:44.180 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:36:44.180 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:36:44.180 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37386 150' command took 2 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-18 01:36:44.180 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.170919
17-03-18 01:36:44.180 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17092 mm
17-03-18 01:36:44.180 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:36:44.180 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 01:36:44.180 -07 000000474 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 01:36:44.180 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:36:44.180 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 37337, sync = True, waitForSettling = False)
17-03-18 01:36:44.180 -07 000000438 INF: Z Motor: Moving to -0.170918 mm, started at -0.170342 mm, distance = -0.58 um
17-03-18 01:36:44.190 -07 000000438 INF: FPGA: Xmit ZDACW 37337\n [Z Motor]
17-03-18 01:36:44.190 -07 000000618 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:36:44.190 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:36:44.190 -07 000000474 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:36:44.190 -07 000000474 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:36:44.190 -07 000000474 INF: Y Motor: Moving 1339 steps-15
17-03-18 01:36:44.190 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 01:36:44.200 -07 000000438 INF: FPGA: 'ZDACW 37337' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:36:44.200 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:36:44.210 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:36:44.210 -07 000000455 INF: FPGA: Recv ZDACR 37337
17-03-18 01:36:44.220 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:36:44.220 -07 000000438 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-18 01:36:44.370 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 01:36:44.370 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 01:36:44.370 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:44.370 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 01:36:44.370 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 01:36:44.370 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:44.380 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:36:44.380 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 01:36:44.380 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:36:44.390 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:36:44.570 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 01:36:44.570 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 01:36:44.620 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:36:44.620 -07 000000444 INF: FPGA: Recv YRDPOS 129482
17-03-18 01:36:44.630 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:44.630 -07 000000474 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:36:44.630 -07 000000474 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 01:36:44.630 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.837 mm, average velocity = 2.163 mm/sec
17-03-18 01:36:44.700 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 4.005817,
17-03-18 01:36:45.580 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:36:45.580 -07 000000455 INF: FPGA: Recv YRDPOS 129483
17-03-18 01:36:45.590 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:36:45.590 -07 000000474 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:36:45.610 -07 000000474 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:36:45.610 -07 000000474 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:36:45.610 -07 000000474 INF: Y Motor: Moved to 63.2241 after 1430 ms (table move)
17-03-18 01:36:45.610 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170918 mm (DAC = 37337)
17-03-18 01:36:45.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:45.620 -07 000000629 INF: FPGA: Recv ZSGSRD 35897
17-03-18 01:36:45.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:36:45.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:45.630 -07 000000626 INF: FPGA: Recv ZSGSRD 35893
17-03-18 01:36:45.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:45.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:45.640 -07 000000626 INF: FPGA: Recv ZSGSRD 35900
17-03-18 01:36:45.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:45.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:45.650 -07 000000447 INF: FPGA: Recv ZSGSRD 35900
17-03-18 01:36:45.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:45.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:45.660 -07 000000626 INF: FPGA: Recv ZSGSRD 35903
17-03-18 01:36:45.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:45.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:45.670 -07 000000626 INF: FPGA: Recv ZSGSRD 35900
17-03-18 01:36:45.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:45.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:45.680 -07 000000626 INF: FPGA: Recv ZSGSRD 35889
17-03-18 01:36:45.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:45.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:45.690 -07 000000626 INF: FPGA: Recv ZSGSRD 35891
17-03-18 01:36:45.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:45.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:45.700 -07 000000626 INF: FPGA: Recv ZSGSRD 35889
17-03-18 01:36:45.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:45.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:45.710 -07 000000626 INF: FPGA: Recv ZSGSRD 35901
17-03-18 01:36:45.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:45.720 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:36:45.720 -07 000000626 INF: FPGA: Recv ZPIEZORD 31761
17-03-18 01:36:45.730 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:45.730 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.697 V. Piezo Error = -9.1 V.
17-03-18 01:36:45.730 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35896 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35898 (-170.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35889 (-170.0 uncal um), Max = 35903 (-170.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:36:45.730 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35896, posNoise = 7, negNoise = 7
17-03-18 01:36:45.730 -07 000000610 INF: Z Motor: After move to -0.170918, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:36:45.730 -07 000000610 INF: Z Motor: Settle wait time = 1432 ms, measure time = 111 ms (allowed 150 ms), total time = 1543 ms
17-03-18 01:36:45.730 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:36:45.770 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-18 01:36:45.770 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:36:45.770 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.170926871051786. ----------
17-03-18 01:36:45.770 -07 000000610 INF: Cycle	89	Tile	5	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:36:45.770 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37161, sync = True, waitForSettling = True)
17-03-18 01:36:45.770 -07 000000610 INF: Z Motor: Moving to -0.170112 mm, started at -0.170927 mm, distance = 0.81 um
17-03-18 01:36:45.770 -07 000000610 INF: FPGA: Xmit ZDACW 37161\n [Z Motor]
17-03-18 01:36:45.770 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 01:36:45.780 -07 000000610 INF: FPGA: 'ZDACW 37161' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:36:45.780 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:36:45.780 -07 000000569 INF: FPGA: Recv ZDACR 37161
17-03-18 01:36:45.790 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:45.790 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:36:45.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:45.940 -07 000000569 INF: FPGA: Recv ZSGSRD 35770
17-03-18 01:36:45.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:36:45.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:45.950 -07 000000569 INF: FPGA: Recv ZSGSRD 35777
17-03-18 01:36:45.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:45.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:45.960 -07 000000455 INF: FPGA: Recv ZSGSRD 35772
17-03-18 01:36:45.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:45.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:45.970 -07 000000455 INF: FPGA: Recv ZSGSRD 35771
17-03-18 01:36:45.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:45.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:45.980 -07 000000455 INF: FPGA: Recv ZSGSRD 35780
17-03-18 01:36:45.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:45.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:45.990 -07 000000455 INF: FPGA: Recv ZSGSRD 35771
17-03-18 01:36:46.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:46.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:46.000 -07 000000455 INF: FPGA: Recv ZSGSRD 35766
17-03-18 01:36:46.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:46.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:46.010 -07 000000447 INF: FPGA: Recv ZSGSRD 35767
17-03-18 01:36:46.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:46.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:46.020 -07 000000629 INF: FPGA: Recv ZSGSRD 35766
17-03-18 01:36:46.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:46.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:46.030 -07 000000626 INF: FPGA: Recv ZSGSRD 35774
17-03-18 01:36:46.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:46.040 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:36:46.040 -07 000000629 INF: FPGA: Recv ZPIEZORD 31555
17-03-18 01:36:46.050 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:46.050 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.670 V. Piezo Error = -9.3 V.
17-03-18 01:36:46.050 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35771 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35771 (-169.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35766 (-169.2 uncal um), Max = 35780 (-169.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:36:46.050 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35771, posNoise = 9, negNoise = 5
17-03-18 01:36:46.050 -07 000000610 INF: Z Motor: After move to -0.170112, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:36:46.050 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 01:36:46.050 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:36:46.050 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:36:46.050 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:36:46.050 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:36:46.050 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:36:46.050 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:36:46.050 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:36:46.050 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:36:46.050 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:36:46.050 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:36:46.050 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:36:46.050 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:36:46.060 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:36:46.060 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:36:46.060 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:36:46.060 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:36:46.070 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 01:36:46.070 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 01:36:46.070 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 01:36:46.070 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 01:36:46.070 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37337 150\n [Camera]
17-03-18 01:36:46.270 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:36:46.660 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:36:46.660 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:36:46.670 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:36:46.670 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:36:46.670 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-18 01:36:46.670 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:36:46.670 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:36:46.670 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:36:46.670 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:36:46.670 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:36:46.860 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37337 776
17-03-18 01:36:47.010 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:36:47.040 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 01:36:47.040 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 01:36:47.040 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:47.050 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:36:47.050 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 01:36:47.050 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 01:36:47.050 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 01:36:47.050 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:47.050 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:36:47.060 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 01:36:47.200 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:36:47.200 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:36:47.200 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:36:47.200 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:36:47.200 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 01:36:47.200 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:36:47.200 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:36:47.200 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:36:47.200 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:36:47.200 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 01:36:47.280 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:36:47.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:36:47.390 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:36:47.390 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:36:47.390 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37337 150' command took 2 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-18 01:36:47.390 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:36:47.390 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.170123844534066. ------
17-03-18 01:36:47.390 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:36:47.390 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17653 mm
17-03-18 01:36:47.390 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:36:47.400 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:36:47.400 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:36:47.400 -07 000000430 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:36:47.400 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 01:36:47.400 -07 000000629 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 01:36:47.410 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:36:47.580 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 01:36:47.580 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 01:36:47.580 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:47.580 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 01:36:47.580 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 01:36:47.580 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:47.580 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:36:47.580 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:36:47.580 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 01:36:47.590 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 01:36:47.590 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 38562, sync = True, waitForSettling = False)
17-03-18 01:36:47.590 -07 000000455 INF: Z Motor: Moving to -0.176526 mm, started at -0.170124 mm, distance = -6.40 um
17-03-18 01:36:47.590 -07 000000455 INF: FPGA: Xmit ZDACW 38562\n [Z Motor]
17-03-18 01:36:47.600 -07 000000626 INF: FPGA: Recv YRDPOS 129483
17-03-18 01:36:47.600 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:36:47.600 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:36:47.600 -07 000000430 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 01:36:47.600 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 184 ms to get response, and 200 ms overall
17-03-18 01:36:47.600 -07 000000629 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:36:47.600 -07 000000629 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:36:47.600 -07 000000629 INF: Y Motor: Moving 1342 steps-18
17-03-18 01:36:47.600 -07 000000455 INF: FPGA: 'ZDACW 38562' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-18 01:36:47.600 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:36:47.610 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:36:47.610 -07 000000430 INF: FPGA: Recv ZDACR 38562
17-03-18 01:36:47.620 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:36:47.620 -07 000000455 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-18 01:36:47.980 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 01:36:47.980 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 374 ms to get response, and 378 ms overall
17-03-18 01:36:48.020 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:36:48.030 -07 000000438 INF: FPGA: Recv YRDPOS 131189
17-03-18 01:36:48.030 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 01:36:48.030 -07 000000629 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:36:48.030 -07 000000629 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-18 01:36:48.030 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.838 mm, average velocity = 2.218 mm/sec
17-03-18 01:36:48.980 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:36:48.980 -07 000000626 INF: FPGA: Recv YRDPOS 131189
17-03-18 01:36:48.990 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:48.990 -07 000000629 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:36:49.010 -07 000000629 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:36:49.010 -07 000000629 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:36:49.010 -07 000000629 INF: Y Motor: Moved to 64.0571 after 1610 ms (table move)
17-03-18 01:36:49.010 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176526 mm (DAC = 38562)
17-03-18 01:36:49.010 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:49.020 -07 000000430 INF: FPGA: Recv ZSGSRD 36774
17-03-18 01:36:49.020 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:36:49.020 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:49.020 -07 000000455 INF: FPGA: Recv ZSGSRD 36765
17-03-18 01:36:49.030 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:49.030 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:49.030 -07 000000438 INF: FPGA: Recv ZSGSRD 36767
17-03-18 01:36:49.040 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:49.040 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:49.040 -07 000000430 INF: FPGA: Recv ZSGSRD 36776
17-03-18 01:36:49.050 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:49.050 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:49.050 -07 000000438 INF: FPGA: Recv ZSGSRD 36771
17-03-18 01:36:49.060 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:49.060 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:49.060 -07 000000430 INF: FPGA: Recv ZSGSRD 36770
17-03-18 01:36:49.070 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:49.070 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:49.070 -07 000000438 INF: FPGA: Recv ZSGSRD 36768
17-03-18 01:36:49.080 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:49.080 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:49.080 -07 000000629 INF: FPGA: Recv ZSGSRD 36765
17-03-18 01:36:49.090 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:49.090 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:49.090 -07 000000625 INF: FPGA: Recv ZSGSRD 36769
17-03-18 01:36:49.100 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:49.100 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:49.100 -07 000000629 INF: FPGA: Recv ZSGSRD 36768
17-03-18 01:36:49.110 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:49.110 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:36:49.110 -07 000000618 INF: FPGA: Recv ZPIEZORD 32923
17-03-18 01:36:49.120 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:49.120 -07 000000444 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.884 V. Piezo Error = -8.5 V.
17-03-18 01:36:49.120 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36769 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36768 (-175.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36765 (-175.6 uncal um), Max = 36776 (-175.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:36:49.120 -07 000000444 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36769, posNoise = 7, negNoise = 4
17-03-18 01:36:49.120 -07 000000444 INF: Z Motor: After move to -0.176526, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:36:49.120 -07 000000444 INF: Z Motor: Settle wait time = 1418 ms, measure time = 103 ms (allowed 150 ms), total time = 1521 ms
17-03-18 01:36:49.120 -07 000000444 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 01:36:49.170 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1772 ms
17-03-18 01:36:49.170 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:36:49.170 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:36:49.170 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:36:49.170 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:36:49.170 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:36:49.170 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:36:49.170 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:36:49.170 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:36:49.170 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:36:49.180 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:36:49.180 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:36:49.190 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:36:49.190 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:36:49.190 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:36:49.240 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:36:49.540 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:36:49.540 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:36:49.540 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:36:49.540 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-18 01:36:49.570 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:36:49.580 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 01:36:49.580 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 01:36:49.670 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:36:49.670 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:49.670 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:36:49.670 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:36:49.680 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:36:49.680 -07 000000625 INF: Autofocus start
17-03-18 01:36:49.680 -07 000000625 INF: MeasureProfile start
17-03-18 01:36:49.680 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:36:49.690 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:36:49.690 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:36:49.690 -07 000000625 INF: MeasureProfile done
17-03-18 01:36:49.690 -07 000000625 INF: X=64  Z correction [um]=0.2557664
17-03-18 01:36:49.690 -07 000000625 INF: Autofocus finished
17-03-18 01:36:49.890 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:36:49.890 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:36:49.890 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.176535208251544. ----------
17-03-18 01:36:49.890 -07 000000610 INF: Cycle	89	Tile	6	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:36:49.900 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37131, sync = True, waitForSettling = True)
17-03-18 01:36:49.900 -07 000000610 INF: Z Motor: Moving to -0.169975 mm, started at -0.176535 mm, distance = 6.56 um
17-03-18 01:36:49.900 -07 000000610 INF: FPGA: Xmit ZDACW 37131\n [Z Motor]
17-03-18 01:36:49.900 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:36:49.910 -07 000000610 INF: FPGA: 'ZDACW 37131' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:49.910 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:36:49.910 -07 000000455 INF: FPGA: Recv ZDACR 37131
17-03-18 01:36:49.920 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:49.920 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:36:50.060 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 4.012614,
17-03-18 01:36:50.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:50.070 -07 000000618 INF: FPGA: Recv ZSGSRD 35751
17-03-18 01:36:50.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:50.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:50.080 -07 000000455 INF: FPGA: Recv ZSGSRD 35750
17-03-18 01:36:50.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:50.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:50.110 -07 000000625 INF: FPGA: Recv ZSGSRD 35747
17-03-18 01:36:50.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:36:50.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:50.120 -07 000000626 INF: FPGA: Recv ZSGSRD 35750
17-03-18 01:36:50.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:50.140 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:50.140 -07 000000430 INF: FPGA: Recv ZSGSRD 35749
17-03-18 01:36:50.150 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:36:50.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:50.150 -07 000000626 INF: FPGA: Recv ZSGSRD 35750
17-03-18 01:36:50.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:50.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:50.160 -07 000000625 INF: FPGA: Recv ZSGSRD 35747
17-03-18 01:36:50.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:50.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:50.170 -07 000000444 INF: FPGA: Recv ZSGSRD 35752
17-03-18 01:36:50.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:50.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:50.180 -07 000000626 INF: FPGA: Recv ZSGSRD 35749
17-03-18 01:36:50.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:50.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:50.190 -07 000000455 INF: FPGA: Recv ZSGSRD 35752
17-03-18 01:36:50.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:50.200 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:36:50.200 -07 000000629 INF: FPGA: Recv ZPIEZORD 31536
17-03-18 01:36:50.210 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:50.210 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.666 V. Piezo Error = -9.3 V.
17-03-18 01:36:50.210 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35750 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35750 (-169.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35747 (-169.1 uncal um), Max = 35752 (-169.1 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:36:50.210 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35750, posNoise = 2, negNoise = 3
17-03-18 01:36:50.210 -07 000000610 INF: Z Motor: After move to -0.169975, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:36:50.210 -07 000000610 INF: Z Motor: MoveAbsStepped took 310 ms)
17-03-18 01:36:50.210 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:36:50.210 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:36:50.210 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:36:50.210 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:36:50.210 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:36:50.210 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:36:50.210 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:36:50.210 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:36:50.210 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:36:50.210 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:36:50.210 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:36:50.210 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:36:50.210 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:36:50.210 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:36:50.210 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:36:50.210 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:36:50.230 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:36:50.230 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:36:50.230 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:36:50.230 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:36:50.230 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37308 150\n [Camera]
17-03-18 01:36:50.430 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:36:50.830 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:36:50.830 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:36:50.830 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:36:50.830 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:36:50.830 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 01:36:50.830 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:36:50.830 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:36:50.830 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:36:50.830 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:36:50.830 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 01:36:51.020 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37308 776
17-03-18 01:36:51.170 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:36:51.200 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 01:36:51.200 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 01:36:51.200 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:51.200 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 01:36:51.200 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 01:36:51.210 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:51.210 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:36:51.210 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:36:51.210 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 01:36:51.220 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 01:36:51.360 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:36:51.360 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:36:51.360 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:36:51.360 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:36:51.360 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 01:36:51.360 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:36:51.360 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:36:51.360 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:36:51.360 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:36:51.360 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 01:36:51.550 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 01:36:51.550 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:36:51.550 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37308 150' command took 2 ms to send, 1304 ms to get response, and 1316 ms overall
17-03-18 01:36:51.550 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.170538
17-03-18 01:36:51.550 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17054 mm
17-03-18 01:36:51.550 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:36:51.560 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 01:36:51.560 -07 000000618 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 01:36:51.560 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 37254, sync = True, waitForSettling = False)
17-03-18 01:36:51.560 -07 000000444 INF: Z Motor: Moving to -0.170538 mm, started at -0.169989 mm, distance = -0.55 um
17-03-18 01:36:51.560 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:36:51.570 -07 000000444 INF: FPGA: Xmit ZDACW 37254\n [Z Motor]
17-03-18 01:36:51.760 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:36:51.760 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:36:51.760 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:51.760 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:36:51.760 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:36:51.760 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:51.760 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:36:51.760 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:36:51.760 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 01:36:51.770 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:36:51.780 -07 000000629 INF: FPGA: Recv YRDPOS 131189
17-03-18 01:36:51.780 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 01:36:51.780 -07 000000444 INF: FPGA: 'ZDACW 37254' command took 0 ms to send, 200 ms to get response, and 218 ms overall
17-03-18 01:36:51.780 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:36:51.780 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 210 ms to get response, and 219 ms overall
17-03-18 01:36:51.780 -07 000000618 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:36:51.780 -07 000000618 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:36:51.780 -07 000000618 INF: Y Motor: Moving 1337 steps-11
17-03-18 01:36:51.780 -07 000000629 INF: FPGA: Recv ZDACR 37254
17-03-18 01:36:51.790 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:51.790 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:36:51.790 -07 000000444 INF: Z Motor: MoveAbsStepped took 229 ms (did NOT wait for settling yet))
17-03-18 01:36:52.160 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 01:36:52.160 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 01:36:52.210 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:36:52.210 -07 000000629 INF: FPGA: Recv YRDPOS 132872
17-03-18 01:36:52.220 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:52.220 -07 000000618 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:36:52.220 -07 000000618 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:36:52.220 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.835 mm, average velocity = 2.164 mm/sec
17-03-18 01:36:52.280 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:36:52.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:36:53.170 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:36:53.170 -07 000000444 INF: FPGA: Recv YRDPOS 132872
17-03-18 01:36:53.180 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:36:53.180 -07 000000618 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:36:53.220 -07 000000618 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:36:53.220 -07 000000618 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:36:53.220 -07 000000618 INF: Y Motor: Moved to 64.8789 after 1661 ms (table move)
17-03-18 01:36:53.220 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170538 mm (DAC = 37254)
17-03-18 01:36:53.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:53.220 -07 000000444 INF: FPGA: Recv ZSGSRD 35837
17-03-18 01:36:53.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:36:53.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:53.230 -07 000000444 INF: FPGA: Recv ZSGSRD 35834
17-03-18 01:36:53.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:53.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:53.240 -07 000000629 INF: FPGA: Recv ZSGSRD 35840
17-03-18 01:36:53.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:53.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:53.250 -07 000000629 INF: FPGA: Recv ZSGSRD 35841
17-03-18 01:36:53.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:53.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:53.280 -07 000000618 INF: FPGA: Recv ZSGSRD 35830
17-03-18 01:36:53.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:36:53.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:53.310 -07 000000618 INF: FPGA: Recv ZSGSRD 35841
17-03-18 01:36:53.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:36:53.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:53.330 -07 000000430 INF: FPGA: Recv ZSGSRD 35836
17-03-18 01:36:53.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:36:53.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:53.340 -07 000000618 INF: FPGA: Recv ZSGSRD 35839
17-03-18 01:36:53.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:53.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:53.350 -07 000000629 INF: FPGA: Recv ZSGSRD 35839
17-03-18 01:36:53.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:53.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:53.360 -07 000000444 INF: FPGA: Recv ZSGSRD 35829
17-03-18 01:36:53.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:53.370 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:36:53.370 -07 000000430 INF: FPGA: Recv ZPIEZORD 31674
17-03-18 01:36:53.380 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:53.380 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.685 V. Piezo Error = -9.2 V.
17-03-18 01:36:53.380 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35837 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35838 (-169.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35829 (-169.6 uncal um), Max = 35841 (-169.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:36:53.380 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35837, posNoise = 4, negNoise = 8
17-03-18 01:36:53.380 -07 000000610 INF: Z Motor: After move to -0.170538, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:36:53.380 -07 000000610 INF: Z Motor: Settle wait time = 1664 ms, measure time = 155 ms (allowed 150 ms), total time = 1819 ms
17-03-18 01:36:53.380 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 155 ms, longer than max expected time of 150 ms
17-03-18 01:36:53.380 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1823 ms
17-03-18 01:36:53.380 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:36:53.380 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.170547842535422. ----------
17-03-18 01:36:53.380 -07 000000610 INF: Cycle	89	Tile	7	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:36:53.380 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37077, sync = True, waitForSettling = True)
17-03-18 01:36:53.380 -07 000000610 INF: Z Motor: Moving to -0.169728 mm, started at -0.170548 mm, distance = 0.82 um
17-03-18 01:36:53.380 -07 000000610 INF: FPGA: Xmit ZDACW 37077\n [Z Motor]
17-03-18 01:36:53.380 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 01:36:53.390 -07 000000610 INF: FPGA: 'ZDACW 37077' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:36:53.390 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:36:53.390 -07 000000625 INF: FPGA: Recv ZDACR 37077
17-03-18 01:36:53.400 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:53.400 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:36:53.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:53.550 -07 000000629 INF: FPGA: Recv ZSGSRD 35715
17-03-18 01:36:53.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:36:53.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:53.560 -07 000000625 INF: FPGA: Recv ZSGSRD 35711
17-03-18 01:36:53.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:53.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:53.570 -07 000000618 INF: FPGA: Recv ZSGSRD 35713
17-03-18 01:36:53.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:53.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:53.580 -07 000000625 INF: FPGA: Recv ZSGSRD 35711
17-03-18 01:36:53.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:53.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:53.590 -07 000000629 INF: FPGA: Recv ZSGSRD 35714
17-03-18 01:36:53.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:53.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:53.600 -07 000000618 INF: FPGA: Recv ZSGSRD 35703
17-03-18 01:36:53.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:53.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:53.610 -07 000000629 INF: FPGA: Recv ZSGSRD 35711
17-03-18 01:36:53.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:53.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:53.620 -07 000000585 INF: FPGA: Recv ZSGSRD 35717
17-03-18 01:36:53.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:53.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:53.630 -07 000000438 INF: FPGA: Recv ZSGSRD 35710
17-03-18 01:36:53.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:53.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:53.640 -07 000000625 INF: FPGA: Recv ZSGSRD 35714
17-03-18 01:36:53.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:53.650 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:36:53.650 -07 000000479 INF: FPGA: Recv ZPIEZORD 31499
17-03-18 01:36:53.660 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:53.660 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.658 V. Piezo Error = -9.3 V.
17-03-18 01:36:53.660 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35712 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35712 (-168.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35703 (-168.8 uncal um), Max = 35717 (-168.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:36:53.660 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35712, posNoise = 5, negNoise = 9
17-03-18 01:36:53.660 -07 000000610 INF: Z Motor: After move to -0.169728, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:36:53.660 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 01:36:53.660 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:36:53.660 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:36:53.660 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:36:53.660 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:36:53.660 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:36:53.660 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:36:53.660 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:36:53.660 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:36:53.660 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:36:53.660 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:36:53.660 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 01:36:53.660 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:36:53.670 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:36:53.670 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:36:53.670 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:36:53.670 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:36:53.670 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:36:53.680 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:36:53.680 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 01:36:53.680 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 01:36:53.680 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37254 150\n [Camera]
17-03-18 01:36:53.880 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:36:54.270 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:36:54.270 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:36:54.270 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:36:54.270 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:36:54.270 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 01:36:54.270 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:36:54.270 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:36:54.280 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:36:54.410 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:36:54.410 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 01:36:54.460 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37254 776
17-03-18 01:36:54.610 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:36:54.670 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 01:36:54.670 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:36:54.670 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:54.680 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:36:54.680 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:36:54.800 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:36:54.800 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:36:54.800 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:36:54.800 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 01:36:54.800 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:36:54.800 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:54.810 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:36:54.810 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:36:54.810 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:36:54.810 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:36:54.810 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:36:54.810 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) start.
17-03-18 01:36:54.820 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 540 ms.
17-03-18 01:36:54.820 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:36:54.820 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 01:36:54.990 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:36:54.990 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:36:54.990 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37254 150' command took 2 ms to send, 1309 ms to get response, and 1314 ms overall
17-03-18 01:36:55.000 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.170350
17-03-18 01:36:55.000 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17035 mm
17-03-18 01:36:55.000 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:36:55.000 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 01:36:55.000 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 37213, sync = True, waitForSettling = False)
17-03-18 01:36:55.000 -07 000000438 INF: Z Motor: Moving to -0.170350 mm, started at -0.169745 mm, distance = -0.61 um
17-03-18 01:36:55.000 -07 000000438 INF: FPGA: Xmit ZDACW 37213\n [Z Motor]
17-03-18 01:36:55.000 -07 000000569 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 01:36:55.000 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 01:36:55.010 -07 000000438 INF: FPGA: 'ZDACW 37213' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:36:55.010 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:36:55.010 -07 000000444 INF: FPGA: Recv ZDACR 37213
17-03-18 01:36:55.020 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:36:55.020 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:55.020 -07 000000438 INF: Z Motor: MoveAbsStepped took 16 ms (did NOT wait for settling yet))
17-03-18 01:36:55.020 -07 000000455 INF: FPGA: Recv YRDPOS 132872
17-03-18 01:36:55.030 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 01:36:55.030 -07 000000569 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:36:55.030 -07 000000569 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:36:55.030 -07 000000569 INF: Y Motor: Moving 1350 steps-28
17-03-18 01:36:55.030 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:36:55.210 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:36:55.210 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:36:55.210 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:55.210 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:36:55.210 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 01:36:55.220 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:36:55.220 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:36:55.220 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:55.220 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:36:55.230 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 422 ms.
17-03-18 01:36:55.400 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 01:36:55.400 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-18 01:36:55.460 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:36:55.460 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 4.009895,
17-03-18 01:36:55.460 -07 000000625 INF: FPGA: Recv YRDPOS 134582
17-03-18 01:36:55.470 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:36:55.470 -07 000000569 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:36:55.470 -07 000000569 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 01:36:55.470 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.844 mm, average velocity = 2.232 mm/sec
17-03-18 01:36:56.420 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:36:56.420 -07 000000625 INF: FPGA: Recv YRDPOS 134582
17-03-18 01:36:56.430 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:36:56.430 -07 000000569 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:36:56.460 -07 000000569 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:36:56.460 -07 000000569 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:36:56.460 -07 000000569 INF: Y Motor: Moved to 65.7139 after 1457 ms (table move)
17-03-18 01:36:56.460 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170350 mm (DAC = 37213)
17-03-18 01:36:56.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:56.460 -07 000000618 INF: FPGA: Recv ZSGSRD 35803
17-03-18 01:36:56.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:36:56.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:56.470 -07 000000625 INF: FPGA: Recv ZSGSRD 35800
17-03-18 01:36:56.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:56.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:56.480 -07 000000618 INF: FPGA: Recv ZSGSRD 35810
17-03-18 01:36:56.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:56.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:56.490 -07 000000618 INF: FPGA: Recv ZSGSRD 35807
17-03-18 01:36:56.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:56.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:56.500 -07 000000479 INF: FPGA: Recv ZSGSRD 35802
17-03-18 01:36:56.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:56.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:56.510 -07 000000618 INF: FPGA: Recv ZSGSRD 35806
17-03-18 01:36:56.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:56.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:56.520 -07 000000625 INF: FPGA: Recv ZSGSRD 35806
17-03-18 01:36:56.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:56.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:56.530 -07 000000479 INF: FPGA: Recv ZSGSRD 35808
17-03-18 01:36:56.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:56.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:56.540 -07 000000569 INF: FPGA: Recv ZSGSRD 35811
17-03-18 01:36:56.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:56.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:56.550 -07 000000479 INF: FPGA: Recv ZSGSRD 35810
17-03-18 01:36:56.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:56.560 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:36:56.560 -07 000000569 INF: FPGA: Recv ZPIEZORD 31656
17-03-18 01:36:56.570 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:56.570 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.678 V. Piezo Error = -9.2 V.
17-03-18 01:36:56.570 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35806 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35806 (-169.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35800 (-169.4 uncal um), Max = 35811 (-169.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:36:56.570 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35806, posNoise = 5, negNoise = 6
17-03-18 01:36:56.570 -07 000000610 INF: Z Motor: After move to -0.170350, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:36:56.570 -07 000000610 INF: Z Motor: Settle wait time = 1459 ms, measure time = 107 ms (allowed 150 ms), total time = 1566 ms
17-03-18 01:36:56.570 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 01:36:56.620 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 01:36:56.620 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:36:56.620 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.170348691959028. ----------
17-03-18 01:36:56.620 -07 000000610 INF: Cycle	89	Tile	8	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:36:56.620 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37036, sync = True, waitForSettling = True)
17-03-18 01:36:56.620 -07 000000610 INF: Z Motor: Moving to -0.169540 mm, started at -0.170349 mm, distance = 0.81 um
17-03-18 01:36:56.620 -07 000000610 INF: FPGA: Xmit ZDACW 37036\n [Z Motor]
17-03-18 01:36:56.630 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:36:56.630 -07 000000610 INF: FPGA: 'ZDACW 37036' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:36:56.630 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:36:56.630 -07 000000479 INF: FPGA: Recv ZDACR 37036
17-03-18 01:36:56.640 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:56.640 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:36:56.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:56.790 -07 000000569 INF: FPGA: Recv ZSGSRD 35684
17-03-18 01:36:56.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:36:56.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:56.800 -07 000000618 INF: FPGA: Recv ZSGSRD 35682
17-03-18 01:36:56.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:56.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:56.810 -07 000000569 INF: FPGA: Recv ZSGSRD 35681
17-03-18 01:36:56.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:56.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:56.820 -07 000000479 INF: FPGA: Recv ZSGSRD 35679
17-03-18 01:36:56.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:56.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:56.830 -07 000000618 INF: FPGA: Recv ZSGSRD 35681
17-03-18 01:36:56.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:56.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:56.840 -07 000000569 INF: FPGA: Recv ZSGSRD 35681
17-03-18 01:36:56.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:56.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:56.850 -07 000000569 INF: FPGA: Recv ZSGSRD 35679
17-03-18 01:36:56.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:56.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:56.860 -07 000000618 INF: FPGA: Recv ZSGSRD 35682
17-03-18 01:36:56.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:56.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:56.870 -07 000000625 INF: FPGA: Recv ZSGSRD 35681
17-03-18 01:36:56.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:56.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:56.880 -07 000000479 INF: FPGA: Recv ZSGSRD 35681
17-03-18 01:36:56.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:56.890 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:36:56.890 -07 000000625 INF: FPGA: Recv ZPIEZORD 31502
17-03-18 01:36:56.900 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:56.900 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.651 V. Piezo Error = -9.2 V.
17-03-18 01:36:56.900 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35681 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35681 (-168.7 uncal um), StdDev = 1 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35679 (-168.7 uncal um), Max = 35684 (-168.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 01:36:56.900 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35681, posNoise = 3, negNoise = 2
17-03-18 01:36:56.900 -07 000000610 INF: Z Motor: After move to -0.169540, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:36:56.900 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 01:36:56.900 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:36:56.900 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:36:56.900 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:36:56.900 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:36:56.900 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:36:56.900 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:36:56.900 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:36:56.900 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:36:56.900 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:36:56.900 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:36:56.900 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 01:36:56.900 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:36:56.910 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:36:56.910 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:36:56.910 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:36:56.910 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:36:56.920 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 01:36:56.920 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 01:36:56.920 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 01:36:56.920 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:36:56.920 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37213 150\n [Camera]
17-03-18 01:36:57.120 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:36:57.280 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:36:57.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:36:57.520 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:36:57.520 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:36:57.520 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:36:57.520 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:36:57.520 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:36:57.520 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:36:57.630 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:36:57.630 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 01:36:57.640 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:36:57.640 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 01:36:57.710 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37213 776
17-03-18 01:36:57.860 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:36:58.010 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 01:36:58.010 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 01:36:58.010 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:58.010 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 01:36:58.010 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 01:36:58.010 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:58.010 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:36:58.010 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 495 ms.
17-03-18 01:36:58.010 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:36:58.020 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 500 ms.
17-03-18 01:36:58.050 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:36:58.050 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:36:58.050 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:36:58.050 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:36:58.050 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) start.
17-03-18 01:36:58.050 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:36:58.050 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:36:58.050 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:36:58.060 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:36:58.060 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 01:36:58.240 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:36:58.240 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:36:58.240 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37213 150' command took 2 ms to send, 1313 ms to get response, and 1316 ms overall
17-03-18 01:36:58.240 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.169902
17-03-18 01:36:58.240 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.16990 mm
17-03-18 01:36:58.240 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:36:58.240 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 01:36:58.240 -07 000000626 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-18 01:36:58.240 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:36:58.240 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 37115, sync = True, waitForSettling = False)
17-03-18 01:36:58.240 -07 000000629 INF: Z Motor: Moving to -0.169902 mm, started at -0.169546 mm, distance = -0.36 um
17-03-18 01:36:58.250 -07 000000629 INF: FPGA: Xmit ZDACW 37115\n [Z Motor]
17-03-18 01:36:58.250 -07 000000585 INF: FPGA: Recv YRDPOS 134582
17-03-18 01:36:58.250 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:36:58.250 -07 000000626 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:36:58.250 -07 000000626 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:36:58.250 -07 000000626 INF: Y Motor: Moving 1342 steps-18
17-03-18 01:36:58.250 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 01:36:58.260 -07 000000629 INF: FPGA: 'ZDACW 37115' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:36:58.260 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:36:58.270 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:36:58.270 -07 000000430 INF: FPGA: Recv ZDACR 37115
17-03-18 01:36:58.280 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 01:36:58.280 -07 000000629 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-18 01:36:58.430 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 01:36:58.430 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 01:36:58.430 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:58.430 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:36:58.430 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 01:36:58.430 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 01:36:58.430 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 01:36:58.430 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:36:58.440 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:36:58.440 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 01:36:58.640 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 01:36:58.640 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-18 01:36:58.690 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:36:58.690 -07 000000569 INF: FPGA: Recv YRDPOS 136272
17-03-18 01:36:58.700 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:36:58.700 -07 000000626 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:36:58.700 -07 000000626 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:36:58.700 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.839 mm, average velocity = 2.156 mm/sec
17-03-18 01:36:59.650 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:36:59.650 -07 000000479 INF: FPGA: Recv YRDPOS 136272
17-03-18 01:36:59.660 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:36:59.660 -07 000000626 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:36:59.680 -07 000000626 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:36:59.680 -07 000000626 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:36:59.680 -07 000000626 INF: Y Motor: Moved to 66.5391 after 1440 ms (table move)
17-03-18 01:36:59.690 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169902 mm (DAC = 37115)
17-03-18 01:36:59.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:59.690 -07 000000479 INF: FPGA: Recv ZSGSRD 35747
17-03-18 01:36:59.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:36:59.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:59.700 -07 000000479 INF: FPGA: Recv ZSGSRD 35731
17-03-18 01:36:59.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:59.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:59.710 -07 000000479 INF: FPGA: Recv ZSGSRD 35734
17-03-18 01:36:59.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:59.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:59.720 -07 000000479 INF: FPGA: Recv ZSGSRD 35732
17-03-18 01:36:59.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:59.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:59.730 -07 000000479 INF: FPGA: Recv ZSGSRD 35732
17-03-18 01:36:59.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:59.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:59.740 -07 000000479 INF: FPGA: Recv ZSGSRD 35741
17-03-18 01:36:59.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:59.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:59.750 -07 000000438 INF: FPGA: Recv ZSGSRD 35736
17-03-18 01:36:59.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:59.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:59.760 -07 000000438 INF: FPGA: Recv ZSGSRD 35745
17-03-18 01:36:59.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:59.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:59.770 -07 000000455 INF: FPGA: Recv ZSGSRD 35734
17-03-18 01:36:59.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:59.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:36:59.780 -07 000000629 INF: FPGA: Recv ZSGSRD 35736
17-03-18 01:36:59.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:59.790 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:36:59.790 -07 000000455 INF: FPGA: Recv ZPIEZORD 31580
17-03-18 01:36:59.800 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:59.800 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.663 V. Piezo Error = -9.2 V.
17-03-18 01:36:59.800 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35737 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35735 (-169.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35731 (-169.0 uncal um), Max = 35747 (-169.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:36:59.800 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35737, posNoise = 10, negNoise = 6
17-03-18 01:36:59.800 -07 000000610 INF: Z Motor: After move to -0.169902, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:36:59.800 -07 000000610 INF: Z Motor: Settle wait time = 1443 ms, measure time = 109 ms (allowed 150 ms), total time = 1552 ms
17-03-18 01:36:59.800 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:36:59.850 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-18 01:36:59.850 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:36:59.850 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.169905421321246. ----------
17-03-18 01:36:59.850 -07 000000610 INF: Cycle	89	Tile	9	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:36:59.850 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36938, sync = True, waitForSettling = True)
17-03-18 01:36:59.850 -07 000000610 INF: Z Motor: Moving to -0.169091 mm, started at -0.169905 mm, distance = 0.81 um
17-03-18 01:36:59.850 -07 000000610 INF: FPGA: Xmit ZDACW 36938\n [Z Motor]
17-03-18 01:36:59.850 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 01:36:59.860 -07 000000610 INF: FPGA: 'ZDACW 36938' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:36:59.860 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:36:59.860 -07 000000618 INF: FPGA: Recv ZDACR 36938
17-03-18 01:36:59.870 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:36:59.870 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:37:00.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:00.020 -07 000000629 INF: FPGA: Recv ZSGSRD 35612
17-03-18 01:37:00.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:00.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:00.030 -07 000000455 INF: FPGA: Recv ZSGSRD 35614
17-03-18 01:37:00.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:00.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:00.040 -07 000000455 INF: FPGA: Recv ZSGSRD 35614
17-03-18 01:37:00.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:00.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:00.050 -07 000000430 INF: FPGA: Recv ZSGSRD 35610
17-03-18 01:37:00.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:00.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:00.060 -07 000000455 INF: FPGA: Recv ZSGSRD 35614
17-03-18 01:37:00.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:00.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:00.070 -07 000000430 INF: FPGA: Recv ZSGSRD 35611
17-03-18 01:37:00.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:00.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:00.080 -07 000000430 INF: FPGA: Recv ZSGSRD 35613
17-03-18 01:37:00.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:00.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:00.090 -07 000000629 INF: FPGA: Recv ZSGSRD 35616
17-03-18 01:37:00.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:00.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:00.100 -07 000000618 INF: FPGA: Recv ZSGSRD 35610
17-03-18 01:37:00.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:00.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:00.110 -07 000000618 INF: FPGA: Recv ZSGSRD 35605
17-03-18 01:37:00.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:00.120 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:00.120 -07 000000430 INF: FPGA: Recv ZPIEZORD 31380
17-03-18 01:37:00.130 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:00.130 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.636 V. Piezo Error = -9.3 V.
17-03-18 01:37:00.130 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35612 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35612 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35605 (-168.2 uncal um), Max = 35616 (-168.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:37:00.130 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35612, posNoise = 4, negNoise = 7
17-03-18 01:37:00.130 -07 000000610 INF: Z Motor: After move to -0.169091, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:00.130 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 01:37:00.130 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:37:00.130 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:37:00.130 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:37:00.130 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:37:00.130 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:37:00.130 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:37:00.130 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:37:00.130 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:37:00.130 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:37:00.130 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:37:00.130 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:37:00.130 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:37:00.130 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:37:00.130 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:37:00.130 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:37:00.140 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:37:00.150 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:37:00.150 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 01:37:00.150 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:37:00.150 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:37:00.150 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37115 150\n [Camera]
17-03-18 01:37:00.350 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:37:00.740 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:37:00.740 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:37:00.750 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:37:00.750 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:37:00.750 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:37:00.750 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:37:00.750 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:37:00.750 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:37:00.750 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:37:00.750 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) start.
17-03-18 01:37:00.830 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 3.988112,
17-03-18 01:37:00.940 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37115 776
17-03-18 01:37:01.090 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:37:01.130 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 01:37:01.130 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 01:37:01.140 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:01.140 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 01:37:01.140 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 01:37:01.140 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:01.140 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:37:01.140 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:37:01.140 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:37:01.150 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:37:01.270 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:37:01.280 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:37:01.280 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:37:01.280 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:37:01.280 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 01:37:01.280 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:37:01.280 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:37:01.280 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:37:01.280 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:37:01.280 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 01:37:01.470 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:37:01.470 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:37:01.470 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37115 150' command took 2 ms to send, 1301 ms to get response, and 1313 ms overall
17-03-18 01:37:01.470 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:37:01.470 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.169102394803526. ------
17-03-18 01:37:01.470 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17596 mm
17-03-18 01:37:01.470 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:37:01.470 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:37:01.470 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 01:37:01.470 -07 000000585 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 01:37:01.470 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 38439, sync = True, waitForSettling = False)
17-03-18 01:37:01.470 -07 000000447 INF: Z Motor: Moving to -0.175962 mm, started at -0.169102 mm, distance = -6.86 um
17-03-18 01:37:01.480 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:37:01.480 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:01.480 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:37:01.480 -07 000000569 INF: FPGA: Recv YRDPOS 136272
17-03-18 01:37:01.490 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:01.490 -07 000000585 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:01.490 -07 000000585 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:37:01.490 -07 000000585 INF: Y Motor: Moving 1350 steps-28
17-03-18 01:37:01.490 -07 000000447 INF: FPGA: Xmit ZDACW 38439\n [Z Motor]
17-03-18 01:37:01.490 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:37:01.500 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:37:01.500 -07 000000447 INF: FPGA: 'ZDACW 38439' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 01:37:01.510 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:37:01.520 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:37:01.520 -07 000000618 INF: FPGA: Recv ZDACR 38439
17-03-18 01:37:01.530 -07 000000447 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:37:01.530 -07 000000447 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 01:37:01.660 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 01:37:01.660 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 01:37:01.660 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:01.660 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 01:37:01.660 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 01:37:01.660 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:01.660 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:37:01.660 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:37:01.660 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 01:37:01.670 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:37:01.700 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:37:01.700 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 01:37:01.880 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 01:37:01.880 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:37:01.930 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:01.930 -07 000000625 INF: FPGA: Recv YRDPOS 137978
17-03-18 01:37:01.940 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:37:01.940 -07 000000585 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:01.940 -07 000000585 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 01:37:01.940 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-18 01:37:02.280 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:37:02.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:37:02.890 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:02.890 -07 000000438 INF: FPGA: Recv YRDPOS 137978
17-03-18 01:37:02.900 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:02.900 -07 000000585 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:02.920 -07 000000585 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:37:02.920 -07 000000585 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:37:02.920 -07 000000585 INF: Y Motor: Moved to 67.3721 after 1448 ms (table move)
17-03-18 01:37:02.930 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175962 mm (DAC = 38439)
17-03-18 01:37:02.930 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:02.930 -07 000000447 INF: FPGA: Recv ZSGSRD 36683
17-03-18 01:37:02.940 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:37:02.940 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:02.940 -07 000000447 INF: FPGA: Recv ZSGSRD 36677
17-03-18 01:37:02.950 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:02.950 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:02.950 -07 000000447 INF: FPGA: Recv ZSGSRD 36678
17-03-18 01:37:02.960 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:02.960 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:02.960 -07 000000447 INF: FPGA: Recv ZSGSRD 36686
17-03-18 01:37:02.970 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:02.970 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:02.970 -07 000000444 INF: FPGA: Recv ZSGSRD 36685
17-03-18 01:37:02.980 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:02.980 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:02.980 -07 000000585 INF: FPGA: Recv ZSGSRD 36684
17-03-18 01:37:02.990 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:02.990 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:02.990 -07 000000569 INF: FPGA: Recv ZSGSRD 36682
17-03-18 01:37:03.000 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:03.000 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:03.000 -07 000000569 INF: FPGA: Recv ZSGSRD 36680
17-03-18 01:37:03.010 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:03.010 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:03.010 -07 000000585 INF: FPGA: Recv ZSGSRD 36674
17-03-18 01:37:03.020 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:03.020 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:03.020 -07 000000585 INF: FPGA: Recv ZSGSRD 36681
17-03-18 01:37:03.030 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:03.030 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:03.030 -07 000000585 INF: FPGA: Recv ZPIEZORD 32830
17-03-18 01:37:03.040 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:03.040 -07 000000629 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.865 V. Piezo Error = -8.5 V.
17-03-18 01:37:03.040 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36681 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36682 (-175.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36674 (-175.0 uncal um), Max = 36686 (-175.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:37:03.040 -07 000000629 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36681, posNoise = 5, negNoise = 7
17-03-18 01:37:03.040 -07 000000629 INF: Z Motor: After move to -0.175962, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:03.040 -07 000000629 INF: Z Motor: Settle wait time = 1453 ms, measure time = 108 ms (allowed 150 ms), total time = 1561 ms
17-03-18 01:37:03.040 -07 000000629 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:37:03.090 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 01:37:03.090 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:37:03.090 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:37:03.090 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:37:03.090 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:37:03.090 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:37:03.090 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:37:03.090 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:37:03.100 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:37:03.100 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:37:03.100 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:37:03.100 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:37:03.110 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:37:03.110 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 01:37:03.110 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:37:03.160 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:37:03.460 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:37:03.460 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:37:03.460 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:37:03.460 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-18 01:37:03.500 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:37:03.500 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 01:37:03.500 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 01:37:03.590 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:37:03.590 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:03.590 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:37:03.590 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 01:37:03.600 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:37:03.600 -07 000000430 INF: Autofocus start
17-03-18 01:37:03.600 -07 000000430 INF: MeasureProfile start
17-03-18 01:37:03.610 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:37:03.610 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:37:03.610 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:37:03.620 -07 000000430 INF: MeasureProfile done
17-03-18 01:37:03.620 -07 000000430 INF: X=-48  Z correction [um]=-0.3191189
17-03-18 01:37:03.620 -07 000000430 INF: Autofocus finished
17-03-18 01:37:03.810 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:37:03.810 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 203 ms overall
17-03-18 01:37:03.820 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.175969877583069. ----------
17-03-18 01:37:03.820 -07 000000610 INF: Cycle	89	Tile	10	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:37:03.820 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36882, sync = True, waitForSettling = True)
17-03-18 01:37:03.820 -07 000000610 INF: Z Motor: Moving to -0.168835 mm, started at -0.175970 mm, distance = 7.13 um
17-03-18 01:37:03.820 -07 000000610 INF: FPGA: Xmit ZDACW 36882\n [Z Motor]
17-03-18 01:37:03.820 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 01:37:03.830 -07 000000610 INF: FPGA: 'ZDACW 36882' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:37:03.830 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:37:03.830 -07 000000618 INF: FPGA: Recv ZDACR 36882
17-03-18 01:37:03.840 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:03.840 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:37:03.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:03.990 -07 000000438 INF: FPGA: Recv ZSGSRD 35570
17-03-18 01:37:04.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:04.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:04.010 -07 000000618 INF: FPGA: Recv ZSGSRD 35567
17-03-18 01:37:04.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:37:04.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:04.020 -07 000000618 INF: FPGA: Recv ZSGSRD 35572
17-03-18 01:37:04.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:04.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:04.050 -07 000000438 INF: FPGA: Recv ZSGSRD 35574
17-03-18 01:37:04.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:37:04.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:04.060 -07 000000618 INF: FPGA: Recv ZSGSRD 35567
17-03-18 01:37:04.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:04.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:04.080 -07 000000438 INF: FPGA: Recv ZSGSRD 35575
17-03-18 01:37:04.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:37:04.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:04.090 -07 000000438 INF: FPGA: Recv ZSGSRD 35568
17-03-18 01:37:04.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:04.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:04.110 -07 000000438 INF: FPGA: Recv ZSGSRD 35567
17-03-18 01:37:04.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:37:04.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:04.120 -07 000000618 INF: FPGA: Recv ZSGSRD 35579
17-03-18 01:37:04.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:04.130 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:04.130 -07 000000438 INF: FPGA: Recv ZSGSRD 35570
17-03-18 01:37:04.140 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:04.140 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:04.140 -07 000000629 INF: FPGA: Recv ZPIEZORD 31366
17-03-18 01:37:04.150 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:04.150 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.628 V. Piezo Error = -9.3 V.
17-03-18 01:37:04.150 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35571 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35570 (-168.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35567 (-167.9 uncal um), Max = 35579 (-168.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:37:04.150 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35571, posNoise = 8, negNoise = 4
17-03-18 01:37:04.150 -07 000000610 INF: Z Motor: After move to -0.168835, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:04.150 -07 000000610 INF: Z Motor: MoveAbsStepped took 326 ms)
17-03-18 01:37:04.150 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:37:04.150 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:37:04.150 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:37:04.150 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:37:04.160 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:37:04.160 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:37:04.160 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:37:04.160 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:37:04.160 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:37:04.160 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:37:04.160 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:37:04.160 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:37:04.160 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:37:04.160 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:37:04.160 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:37:04.160 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:37:04.170 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:37:04.170 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 01:37:04.170 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:37:04.170 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:37:04.180 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37059 150\n [Camera]
17-03-18 01:37:04.370 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:37:04.770 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:37:04.770 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:37:04.770 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:37:04.770 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:37:04.770 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 01:37:04.770 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:37:04.770 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:37:04.770 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:37:04.770 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:37:04.770 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 01:37:04.960 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37059 776
17-03-18 01:37:05.110 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:37:05.170 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:37:05.170 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:37:05.170 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:05.170 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 01:37:05.170 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:37:05.170 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:05.170 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:37:05.170 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:37:05.170 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:37:05.180 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 01:37:05.300 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:37:05.300 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:37:05.300 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:37:05.430 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:37:05.430 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:37:05.430 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:37:05.430 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:37:05.430 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:37:05.430 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:37:05.430 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:37:05.490 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:37:05.490 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:37:05.490 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37059 150' command took 2 ms to send, 1304 ms to get response, and 1313 ms overall
17-03-18 01:37:05.490 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.169096
17-03-18 01:37:05.490 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.16910 mm
17-03-18 01:37:05.490 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:37:05.490 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 01:37:05.490 -07 000000430 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 01:37:05.490 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:05.490 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 36939, sync = True, waitForSettling = False)
17-03-18 01:37:05.490 -07 000000585 INF: Z Motor: Moving to -0.169096 mm, started at -0.168839 mm, distance = -0.26 um
17-03-18 01:37:05.500 -07 000000585 INF: FPGA: Xmit ZDACW 36939\n [Z Motor]
17-03-18 01:37:05.500 -07 000000447 INF: FPGA: Recv YRDPOS 137978
17-03-18 01:37:05.500 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:37:05.500 -07 000000430 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:05.500 -07 000000430 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:37:05.500 -07 000000430 INF: Y Motor: Moving 1345 steps-22
17-03-18 01:37:05.500 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 01:37:05.510 -07 000000585 INF: FPGA: 'ZDACW 36939' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:05.510 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:37:05.520 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:37:05.520 -07 000000479 INF: FPGA: Recv ZDACR 36939
17-03-18 01:37:05.530 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:37:05.530 -07 000000585 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-18 01:37:05.830 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:37:05.830 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:37:05.830 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:05.830 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:37:05.830 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:37:05.830 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:05.830 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:37:05.840 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:37:05.840 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 536 ms.
17-03-18 01:37:05.840 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:37:05.880 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 01:37:05.880 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 01:37:05.930 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:05.930 -07 000000474 INF: FPGA: Recv YRDPOS 139684
17-03-18 01:37:05.940 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:05.940 -07 000000430 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:05.940 -07 000000430 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 01:37:05.940 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.841 mm, average velocity = 2.178 mm/sec
17-03-18 01:37:06.190 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 4.001704,
17-03-18 01:37:06.890 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:06.890 -07 000000626 INF: FPGA: Recv YRDPOS 139684
17-03-18 01:37:06.900 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:06.900 -07 000000430 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:06.920 -07 000000430 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:37:06.920 -07 000000430 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:37:06.920 -07 000000430 INF: Y Motor: Moved to 68.2051 after 1426 ms (table move)
17-03-18 01:37:06.920 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169096 mm (DAC = 36939)
17-03-18 01:37:06.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:06.930 -07 000000455 INF: FPGA: Recv ZSGSRD 35615
17-03-18 01:37:06.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:37:06.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:06.930 -07 000000479 INF: FPGA: Recv ZSGSRD 35609
17-03-18 01:37:06.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:37:06.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:06.940 -07 000000626 INF: FPGA: Recv ZSGSRD 35611
17-03-18 01:37:06.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:06.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:06.950 -07 000000430 INF: FPGA: Recv ZSGSRD 35616
17-03-18 01:37:06.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:06.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:06.960 -07 000000626 INF: FPGA: Recv ZSGSRD 35615
17-03-18 01:37:06.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:06.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:06.970 -07 000000479 INF: FPGA: Recv ZSGSRD 35606
17-03-18 01:37:06.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:06.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:06.980 -07 000000455 INF: FPGA: Recv ZSGSRD 35610
17-03-18 01:37:06.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:06.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:06.990 -07 000000430 INF: FPGA: Recv ZSGSRD 35608
17-03-18 01:37:07.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:07.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:07.000 -07 000000626 INF: FPGA: Recv ZSGSRD 35611
17-03-18 01:37:07.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:07.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:07.010 -07 000000430 INF: FPGA: Recv ZSGSRD 35614
17-03-18 01:37:07.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:07.020 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:07.020 -07 000000455 INF: FPGA: Recv ZPIEZORD 31416
17-03-18 01:37:07.030 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:07.030 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.637 V. Piezo Error = -9.3 V.
17-03-18 01:37:07.030 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35612 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35611 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35606 (-168.2 uncal um), Max = 35616 (-168.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:37:07.030 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35612, posNoise = 4, negNoise = 6
17-03-18 01:37:07.030 -07 000000610 INF: Z Motor: After move to -0.169096, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:07.030 -07 000000610 INF: Z Motor: Settle wait time = 1428 ms, measure time = 103 ms (allowed 150 ms), total time = 1531 ms
17-03-18 01:37:07.030 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 01:37:07.080 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-18 01:37:07.080 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:37:07.080 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.169102394803526. ----------
17-03-18 01:37:07.080 -07 000000610 INF: Cycle	89	Tile	11	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:37:07.090 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36762, sync = True, waitForSettling = True)
17-03-18 01:37:07.090 -07 000000610 INF: Z Motor: Moving to -0.168286 mm, started at -0.169102 mm, distance = 0.82 um
17-03-18 01:37:07.090 -07 000000610 INF: FPGA: Xmit ZDACW 36762\n [Z Motor]
17-03-18 01:37:07.090 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 01:37:07.100 -07 000000610 INF: FPGA: 'ZDACW 36762' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:37:07.100 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:37:07.100 -07 000000479 INF: FPGA: Recv ZDACR 36762
17-03-18 01:37:07.110 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:07.110 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:37:07.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:07.260 -07 000000430 INF: FPGA: Recv ZSGSRD 35487
17-03-18 01:37:07.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:07.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:07.270 -07 000000479 INF: FPGA: Recv ZSGSRD 35486
17-03-18 01:37:07.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:07.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:07.280 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:37:07.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:37:07.280 -07 000000618 INF: FPGA: Recv ZSGSRD 35488
17-03-18 01:37:07.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:07.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:07.290 -07 000000438 INF: FPGA: Recv ZSGSRD 35486
17-03-18 01:37:07.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:07.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:07.300 -07 000000629 INF: FPGA: Recv ZSGSRD 35485
17-03-18 01:37:07.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:07.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:07.310 -07 000000618 INF: FPGA: Recv ZSGSRD 35485
17-03-18 01:37:07.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:07.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:07.320 -07 000000618 INF: FPGA: Recv ZSGSRD 35488
17-03-18 01:37:07.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:07.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:07.330 -07 000000629 INF: FPGA: Recv ZSGSRD 35489
17-03-18 01:37:07.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:07.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:07.340 -07 000000618 INF: FPGA: Recv ZSGSRD 35486
17-03-18 01:37:07.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:07.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:07.350 -07 000000629 INF: FPGA: Recv ZSGSRD 35488
17-03-18 01:37:07.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:07.360 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:07.360 -07 000000629 INF: FPGA: Recv ZPIEZORD 31253
17-03-18 01:37:07.370 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:07.370 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.610 V. Piezo Error = -9.3 V.
17-03-18 01:37:07.370 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35487 (-167.4 uncal um), Error = 0.9 uncal um, Median = 35486 (-167.4 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 35485 (-167.4 uncal um), Max = 35489 (-167.4 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 01:37:07.370 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35487, posNoise = 2, negNoise = 2
17-03-18 01:37:07.370 -07 000000610 INF: Z Motor: After move to -0.168286, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:07.370 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 01:37:07.370 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:37:07.370 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:37:07.370 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:37:07.370 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:37:07.370 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:37:07.370 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:37:07.370 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:37:07.370 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:37:07.370 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:37:07.370 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:37:07.370 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:37:07.370 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:37:07.380 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:37:07.380 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:37:07.380 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:37:07.380 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:37:07.390 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:37:07.390 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:37:07.390 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 01:37:07.390 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:37:07.390 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36939 150\n [Camera]
17-03-18 01:37:07.590 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:37:07.980 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:37:07.980 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:37:07.980 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:37:07.980 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:37:07.980 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) start.
17-03-18 01:37:07.980 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:37:07.980 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:37:07.980 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:37:07.980 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:37:07.980 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 01:37:08.170 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36939 776
17-03-18 01:37:08.320 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:37:08.360 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 01:37:08.360 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 01:37:08.360 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:08.370 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 01:37:08.370 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 01:37:08.370 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:08.370 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:37:08.370 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:37:08.370 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 01:37:08.380 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:37:08.510 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:37:08.510 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:37:08.510 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:37:08.510 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:37:08.510 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:37:08.510 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:37:08.520 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:37:08.520 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:37:08.520 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:37:08.520 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:37:08.700 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:37:08.700 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:37:08.700 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36939 150' command took 2 ms to send, 1307 ms to get response, and 1314 ms overall
17-03-18 01:37:08.700 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.168807
17-03-18 01:37:08.700 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16881 mm
17-03-18 01:37:08.700 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:37:08.710 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 01:37:08.710 -07 000000618 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-18 01:37:08.710 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:08.910 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:37:08.920 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:37:08.920 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:08.920 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:37:08.920 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:37:08.920 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:08.920 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:37:08.920 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:37:08.920 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:37:08.930 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 01:37:08.930 -07 000000444 INF: FPGA: Recv YRDPOS 139684
17-03-18 01:37:08.930 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 216 ms to get response, and 223 ms overall
17-03-18 01:37:08.930 -07 000000618 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:08.930 -07 000000618 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:37:08.930 -07 000000618 INF: Y Motor: Moving 1340 steps-15
17-03-18 01:37:08.930 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:37:08.930 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 36876, sync = True, waitForSettling = False)
17-03-18 01:37:08.930 -07 000000629 INF: Z Motor: Moving to -0.168808 mm, started at -0.168299 mm, distance = -0.51 um
17-03-18 01:37:08.940 -07 000000629 INF: FPGA: Xmit ZDACW 36876\n [Z Motor]
17-03-18 01:37:08.940 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 01:37:08.950 -07 000000629 INF: FPGA: 'ZDACW 36876' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:37:08.950 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:37:08.950 -07 000000444 INF: FPGA: Recv ZDACR 36876
17-03-18 01:37:08.960 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:08.960 -07 000000629 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-18 01:37:09.310 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 01:37:09.310 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 374 ms to get response, and 378 ms overall
17-03-18 01:37:09.350 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:09.360 -07 000000585 INF: FPGA: Recv YRDPOS 141367
17-03-18 01:37:09.360 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:37:09.360 -07 000000618 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:09.360 -07 000000618 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 01:37:09.360 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.838 mm, average velocity = 2.216 mm/sec
17-03-18 01:37:10.310 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:10.310 -07 000000430 INF: FPGA: Recv YRDPOS 141368
17-03-18 01:37:10.320 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:10.320 -07 000000618 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:10.340 -07 000000618 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:37:10.340 -07 000000618 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:37:10.340 -07 000000618 INF: Y Motor: Moved to 69.0273 after 1634 ms (table move)
17-03-18 01:37:10.340 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168808 mm (DAC = 36876)
17-03-18 01:37:10.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:10.350 -07 000000438 INF: FPGA: Recv ZSGSRD 35568
17-03-18 01:37:10.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:10.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:10.360 -07 000000626 INF: FPGA: Recv ZSGSRD 35573
17-03-18 01:37:10.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:10.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:10.370 -07 000000430 INF: FPGA: Recv ZSGSRD 35565
17-03-18 01:37:10.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:10.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:10.380 -07 000000430 INF: FPGA: Recv ZSGSRD 35563
17-03-18 01:37:10.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:10.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:10.390 -07 000000430 INF: FPGA: Recv ZSGSRD 35568
17-03-18 01:37:10.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:10.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:10.400 -07 000000585 INF: FPGA: Recv ZSGSRD 35565
17-03-18 01:37:10.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:10.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:10.410 -07 000000618 INF: FPGA: Recv ZSGSRD 35572
17-03-18 01:37:10.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:10.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:10.420 -07 000000626 INF: FPGA: Recv ZSGSRD 35570
17-03-18 01:37:10.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:10.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:10.430 -07 000000626 INF: FPGA: Recv ZSGSRD 35571
17-03-18 01:37:10.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:10.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:10.440 -07 000000626 INF: FPGA: Recv ZSGSRD 35574
17-03-18 01:37:10.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:10.450 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:10.450 -07 000000626 INF: FPGA: Recv ZPIEZORD 31352
17-03-18 01:37:10.460 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:10.460 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.627 V. Piezo Error = -9.3 V.
17-03-18 01:37:10.460 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35569 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35569 (-168.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35563 (-167.9 uncal um), Max = 35574 (-168.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:37:10.460 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35569, posNoise = 5, negNoise = 6
17-03-18 01:37:10.460 -07 000000610 INF: Z Motor: After move to -0.168808, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:10.460 -07 000000610 INF: Z Motor: Settle wait time = 1411 ms, measure time = 112 ms (allowed 150 ms), total time = 1523 ms
17-03-18 01:37:10.460 -07 000000610 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-18 01:37:10.500 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1790 ms
17-03-18 01:37:10.500 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:37:10.500 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.16882615368143. ----------
17-03-18 01:37:10.500 -07 000000610 INF: Cycle	89	Tile	12	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:37:10.500 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36699, sync = True, waitForSettling = True)
17-03-18 01:37:10.500 -07 000000610 INF: Z Motor: Moving to -0.167997 mm, started at -0.168826 mm, distance = 0.83 um
17-03-18 01:37:10.500 -07 000000610 INF: FPGA: Xmit ZDACW 36699\n [Z Motor]
17-03-18 01:37:10.500 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 01:37:10.510 -07 000000610 INF: FPGA: 'ZDACW 36699' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:37:10.510 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:37:10.510 -07 000000444 INF: FPGA: Recv ZDACR 36699
17-03-18 01:37:10.520 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:10.520 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:37:10.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:10.670 -07 000000444 INF: FPGA: Recv ZSGSRD 35444
17-03-18 01:37:10.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:10.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:10.680 -07 000000479 INF: FPGA: Recv ZSGSRD 35446
17-03-18 01:37:10.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:37:10.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:10.690 -07 000000479 INF: FPGA: Recv ZSGSRD 35442
17-03-18 01:37:10.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:10.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:10.700 -07 000000455 INF: FPGA: Recv ZSGSRD 35438
17-03-18 01:37:10.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:10.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:10.710 -07 000000438 INF: FPGA: Recv ZSGSRD 35442
17-03-18 01:37:10.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:10.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:10.720 -07 000000438 INF: FPGA: Recv ZSGSRD 35442
17-03-18 01:37:10.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:10.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:10.730 -07 000000444 INF: FPGA: Recv ZSGSRD 35443
17-03-18 01:37:10.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:10.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:10.740 -07 000000444 INF: FPGA: Recv ZSGSRD 35442
17-03-18 01:37:10.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:10.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:10.750 -07 000000618 INF: FPGA: Recv ZSGSRD 35447
17-03-18 01:37:10.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:10.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:10.760 -07 000000569 INF: FPGA: Recv ZSGSRD 35444
17-03-18 01:37:10.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:10.770 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:10.770 -07 000000618 INF: FPGA: Recv ZPIEZORD 31199
17-03-18 01:37:10.780 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:10.780 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.600 V. Piezo Error = -9.3 V.
17-03-18 01:37:10.780 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35443 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35442 (-167.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35438 (-167.1 uncal um), Max = 35447 (-167.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:37:10.780 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35443, posNoise = 4, negNoise = 5
17-03-18 01:37:10.780 -07 000000610 INF: Z Motor: After move to -0.167997, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:10.780 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 01:37:10.780 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:37:10.780 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:37:10.780 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:37:10.780 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:37:10.780 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:37:10.780 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:37:10.780 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:37:10.780 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:37:10.780 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:37:10.780 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:37:10.780 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:37:10.780 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:37:10.790 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:37:10.790 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:37:10.790 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:37:10.790 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:37:10.800 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:37:10.800 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:37:10.810 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-18 01:37:10.810 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 01:37:10.810 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36876 150\n [Camera]
17-03-18 01:37:11.010 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:37:11.400 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:37:11.400 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:37:11.400 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:37:11.400 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:37:11.400 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) start.
17-03-18 01:37:11.400 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:37:11.400 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:37:11.400 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:37:11.400 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:37:11.400 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-18 01:37:11.790 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 01:37:11.790 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:37:11.790 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:11.800 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 01:37:11.800 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 01:37:11.800 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:11.800 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:37:11.800 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:37:11.800 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:37:11.810 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 01:37:11.810 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36876 776
17-03-18 01:37:11.810 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:37:11.810 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 3.981281,
17-03-18 01:37:11.930 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:37:11.930 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:37:11.930 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:37:11.930 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:37:11.930 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-18 01:37:11.930 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:37:11.930 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:37:11.940 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:37:11.940 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:37:11.940 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:37:12.310 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 01:37:12.310 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 01:37:12.310 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:12.310 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 01:37:12.310 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 01:37:12.310 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:12.310 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:37:12.310 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 01:37:12.320 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:37:12.320 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 01:37:12.330 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:37:12.330 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:37:12.330 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:37:12.330 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36876 150' command took 2 ms to send, 1510 ms to get response, and 1518 ms overall
17-03-18 01:37:12.330 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:37:12.330 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.168506
17-03-18 01:37:12.330 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.16851 mm
17-03-18 01:37:12.330 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:37:12.330 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 01:37:12.330 -07 000000585 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 01:37:12.330 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:12.330 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 36810, sync = True, waitForSettling = False)
17-03-18 01:37:12.330 -07 000000618 INF: Z Motor: Moving to -0.168505 mm, started at -0.168017 mm, distance = -0.49 um
17-03-18 01:37:12.340 -07 000000618 INF: FPGA: Xmit ZDACW 36810\n [Z Motor]
17-03-18 01:37:12.940 -07 000000625 INF: FPGA: Recv YRDPOS 141368
17-03-18 01:37:12.940 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:37:12.940 -07 000000618 INF: FPGA: 'ZDACW 36810' command took 0 ms to send, 591 ms to get response, and 601 ms overall
17-03-18 01:37:12.940 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:37:12.940 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 600 ms to get response, and 603 ms overall
17-03-18 01:37:12.940 -07 000000585 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:12.940 -07 000000585 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:37:12.940 -07 000000585 INF: Y Motor: Moving 1352 steps-32
17-03-18 01:37:12.940 -07 000000625 INF: FPGA: Recv ZDACR 36810
17-03-18 01:37:12.950 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:37:12.950 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:37:12.950 -07 000000618 INF: Z Motor: MoveAbsStepped took 610 ms (did NOT wait for settling yet))
17-03-18 01:37:13.320 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 01:37:13.320 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 01:37:13.370 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:13.370 -07 000000479 INF: FPGA: Recv YRDPOS 143080
17-03-18 01:37:13.380 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:37:13.380 -07 000000585 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:13.380 -07 000000585 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 01:37:13.380 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.845 mm, average velocity = 2.190 mm/sec
17-03-18 01:37:14.330 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:14.330 -07 000000430 INF: FPGA: Recv YRDPOS 143080
17-03-18 01:37:14.340 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:14.340 -07 000000585 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:14.360 -07 000000585 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:37:14.360 -07 000000585 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:37:14.360 -07 000000585 INF: Y Motor: Moved to 69.8633 after 2030 ms (table move)
17-03-18 01:37:14.370 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168505 mm (DAC = 36810)
17-03-18 01:37:14.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:14.370 -07 000000430 INF: FPGA: Recv ZSGSRD 35516
17-03-18 01:37:14.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:14.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:14.380 -07 000000447 INF: FPGA: Recv ZSGSRD 35524
17-03-18 01:37:14.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:14.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:14.390 -07 000000629 INF: FPGA: Recv ZSGSRD 35530
17-03-18 01:37:14.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:14.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:14.400 -07 000000479 INF: FPGA: Recv ZSGSRD 35522
17-03-18 01:37:14.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:14.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:14.410 -07 000000438 INF: FPGA: Recv ZSGSRD 35521
17-03-18 01:37:14.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:14.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:14.420 -07 000000625 INF: FPGA: Recv ZSGSRD 35515
17-03-18 01:37:14.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:14.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:14.430 -07 000000629 INF: FPGA: Recv ZSGSRD 35515
17-03-18 01:37:14.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:14.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:14.440 -07 000000479 INF: FPGA: Recv ZSGSRD 35519
17-03-18 01:37:14.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:14.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:14.450 -07 000000430 INF: FPGA: Recv ZSGSRD 35516
17-03-18 01:37:14.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:14.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:14.460 -07 000000479 INF: FPGA: Recv ZSGSRD 35530
17-03-18 01:37:14.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:14.480 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:14.480 -07 000000479 INF: FPGA: Recv ZPIEZORD 31354
17-03-18 01:37:14.490 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:37:14.490 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.617 V. Piezo Error = -9.2 V.
17-03-18 01:37:14.490 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35521 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35520 (-167.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35515 (-167.6 uncal um), Max = 35530 (-167.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:37:14.490 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35521, posNoise = 9, negNoise = 6
17-03-18 01:37:14.490 -07 000000610 INF: Z Motor: After move to -0.168505, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:14.490 -07 000000610 INF: Z Motor: Settle wait time = 2030 ms, measure time = 121 ms (allowed 150 ms), total time = 2151 ms
17-03-18 01:37:14.490 -07 000000610 INF: Z Motor: Waiting extra 29 ms after reading position to reach expected total of 150 ms
17-03-18 01:37:14.520 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2185 ms
17-03-18 01:37:14.520 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:37:14.520 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.168517791498626. ----------
17-03-18 01:37:14.520 -07 000000610 INF: Cycle	89	Tile	13	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:37:14.520 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36633, sync = True, waitForSettling = True)
17-03-18 01:37:14.520 -07 000000610 INF: Z Motor: Moving to -0.167695 mm, started at -0.168518 mm, distance = 0.82 um
17-03-18 01:37:14.520 -07 000000610 INF: FPGA: Xmit ZDACW 36633\n [Z Motor]
17-03-18 01:37:14.520 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 01:37:14.530 -07 000000610 INF: FPGA: 'ZDACW 36633' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:37:14.530 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:37:14.530 -07 000000438 INF: FPGA: Recv ZDACR 36633
17-03-18 01:37:14.540 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:14.540 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:37:14.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:14.690 -07 000000479 INF: FPGA: Recv ZSGSRD 35397
17-03-18 01:37:14.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:14.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:14.700 -07 000000629 INF: FPGA: Recv ZSGSRD 35395
17-03-18 01:37:14.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:14.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:14.710 -07 000000447 INF: FPGA: Recv ZSGSRD 35392
17-03-18 01:37:14.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:14.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:14.720 -07 000000625 INF: FPGA: Recv ZSGSRD 35393
17-03-18 01:37:14.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:14.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:14.730 -07 000000447 INF: FPGA: Recv ZSGSRD 35391
17-03-18 01:37:14.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:14.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:14.740 -07 000000629 INF: FPGA: Recv ZSGSRD 35389
17-03-18 01:37:14.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:14.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:14.750 -07 000000430 INF: FPGA: Recv ZSGSRD 35395
17-03-18 01:37:14.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:14.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:14.760 -07 000000625 INF: FPGA: Recv ZSGSRD 35392
17-03-18 01:37:14.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:14.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:14.770 -07 000000438 INF: FPGA: Recv ZSGSRD 35400
17-03-18 01:37:14.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:14.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:14.800 -07 000000438 INF: FPGA: Recv ZSGSRD 35397
17-03-18 01:37:14.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:37:14.820 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:14.820 -07 000000625 INF: FPGA: Recv ZPIEZORD 31179
17-03-18 01:37:14.830 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:37:14.830 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.590 V. Piezo Error = -9.3 V.
17-03-18 01:37:14.830 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35394 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35394 (-166.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35389 (-166.8 uncal um), Max = 35400 (-166.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:37:14.830 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35394, posNoise = 6, negNoise = 5
17-03-18 01:37:14.830 -07 000000610 INF: Z Motor: After move to -0.167695, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:14.830 -07 000000610 INF: Z Motor: MoveAbsStepped took 306 ms)
17-03-18 01:37:14.830 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:37:14.830 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:37:14.830 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:37:14.830 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:37:14.830 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:37:14.830 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:37:14.830 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:37:14.830 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:37:14.830 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:37:14.830 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:37:14.830 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:37:14.830 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:37:14.840 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:37:14.840 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:37:14.840 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:37:14.840 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:37:14.850 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:37:14.850 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:37:14.850 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:37:14.850 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:37:14.850 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36810 150\n [Camera]
17-03-18 01:37:15.050 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:37:15.440 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:37:15.440 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:37:15.440 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:37:15.440 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:37:15.440 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 01:37:15.440 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:37:15.440 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:37:15.440 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:37:15.440 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:37:15.440 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 01:37:15.840 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:37:15.840 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:37:15.840 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:15.840 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:37:15.840 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:37:15.840 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:37:15.840 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:37:15.840 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:15.850 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:37:15.850 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36810 776
17-03-18 01:37:15.850 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:37:15.850 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:37:15.970 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:37:15.970 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:37:15.970 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:37:15.970 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:37:15.970 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 01:37:15.970 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:37:15.970 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:37:15.970 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:37:15.980 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:37:15.980 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 01:37:16.380 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 01:37:16.380 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:37:16.380 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:16.380 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 01:37:16.380 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 01:37:16.380 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:16.380 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:37:16.380 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 01:37:16.380 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:37:16.390 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 01:37:16.390 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:37:16.390 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:37:16.390 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36810 150' command took 2 ms to send, 1537 ms to get response, and 1543 ms overall
17-03-18 01:37:16.400 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:37:16.400 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.167701916556622. ------
17-03-18 01:37:16.400 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:37:16.400 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17372 mm
17-03-18 01:37:16.400 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:37:17.200 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 01:37:17.200 -07 000000626 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-18 01:37:17.200 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:17.710 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:37:17.710 -07 000000455 INF: FPGA: Recv YRDPOS 143080
17-03-18 01:37:17.710 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:37:17.710 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 500 ms to get response, and 509 ms overall
17-03-18 01:37:17.710 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1300 ms to get response, and 1304 ms overall
17-03-18 01:37:17.710 -07 000000626 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:17.710 -07 000000626 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:37:17.710 -07 000000626 INF: Y Motor: Moving 1343 steps-19
17-03-18 01:37:17.710 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:37:17.710 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:37:17.710 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 37950, sync = True, waitForSettling = False)
17-03-18 01:37:17.710 -07 000000455 INF: Z Motor: Moving to -0.173724 mm, started at -0.167702 mm, distance = -6.02 um
17-03-18 01:37:17.720 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:37:17.730 -07 000000455 INF: FPGA: Xmit ZDACW 37950\n [Z Motor]
17-03-18 01:37:18.710 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 01:37:18.710 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:37:18.710 -07 000000455 INF: FPGA: 'ZDACW 37950' command took 0 ms to send, 970 ms to get response, and 997 ms overall
17-03-18 01:37:18.710 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 990 ms to get response, and 999 ms overall
17-03-18 01:37:18.710 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 01:37:18.710 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 981 ms to get response, and 999 ms overall
17-03-18 01:37:18.710 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:37:18.710 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 3.994908,
17-03-18 01:37:18.710 -07 000000444 INF: FPGA: Recv ZDACR 37950
17-03-18 01:37:18.720 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:37:18.720 -07 000000455 INF: Z Motor: MoveAbsStepped took 1007 ms (did NOT wait for settling yet))
17-03-18 01:37:18.760 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:18.760 -07 000000444 INF: FPGA: Recv YRDPOS 144770
17-03-18 01:37:18.770 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:37:18.770 -07 000000626 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:18.770 -07 000000626 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 01:37:18.770 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1000 ms, distance = 0.839 mm, average velocity = 0.839 mm/sec
17-03-18 01:37:19.720 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:19.720 -07 000000455 INF: FPGA: Recv YRDPOS 144770
17-03-18 01:37:19.730 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:19.730 -07 000000626 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:19.750 -07 000000626 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:37:19.750 -07 000000626 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:37:19.750 -07 000000626 INF: Y Motor: Moved to 70.6885 after 2556 ms (table move)
17-03-18 01:37:19.760 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173724 mm (DAC = 37950)
17-03-18 01:37:19.760 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:19.760 -07 000000479 INF: FPGA: Recv ZSGSRD 36336
17-03-18 01:37:19.770 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:19.770 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:19.770 -07 000000455 INF: FPGA: Recv ZSGSRD 36331
17-03-18 01:37:19.780 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:19.780 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:19.780 -07 000000474 INF: FPGA: Recv ZSGSRD 36329
17-03-18 01:37:19.790 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:19.790 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:19.790 -07 000000629 INF: FPGA: Recv ZSGSRD 36332
17-03-18 01:37:19.800 -07 000000438 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:19.800 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:19.800 -07 000000455 INF: FPGA: Recv ZSGSRD 36329
17-03-18 01:37:19.810 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:19.810 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:19.810 -07 000000629 INF: FPGA: Recv ZSGSRD 36331
17-03-18 01:37:19.820 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:19.820 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:19.820 -07 000000569 INF: FPGA: Recv ZSGSRD 36339
17-03-18 01:37:19.830 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:19.830 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:19.830 -07 000000474 INF: FPGA: Recv ZSGSRD 36335
17-03-18 01:37:19.840 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:19.840 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:19.840 -07 000000569 INF: FPGA: Recv ZSGSRD 36337
17-03-18 01:37:19.850 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:19.860 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:19.860 -07 000000479 INF: FPGA: Recv ZSGSRD 36336
17-03-18 01:37:19.870 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:37:19.870 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:19.870 -07 000000626 INF: FPGA: Recv ZPIEZORD 32424
17-03-18 01:37:19.880 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:19.880 -07 000000438 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.791 V. Piezo Error = -8.6 V.
17-03-18 01:37:19.880 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36334 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36334 (-172.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36329 (-172.8 uncal um), Max = 36339 (-172.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:37:19.880 -07 000000438 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36334, posNoise = 5, negNoise = 5
17-03-18 01:37:19.880 -07 000000438 INF: Z Motor: After move to -0.173724, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:19.880 -07 000000438 INF: Z Motor: Settle wait time = 2047 ms, measure time = 120 ms (allowed 150 ms), total time = 2167 ms
17-03-18 01:37:19.880 -07 000000438 INF: Z Motor: Waiting extra 30 ms after reading position to reach expected total of 150 ms
17-03-18 01:37:19.910 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3503 ms
17-03-18 01:37:19.910 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:37:19.910 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:37:19.910 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:37:19.910 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:37:19.910 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:37:19.910 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:37:19.910 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:37:19.910 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:37:19.910 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:37:19.920 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:37:19.920 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:37:19.930 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:37:19.930 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 01:37:19.930 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:37:19.980 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:37:20.280 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:37:20.280 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:37:20.280 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:37:20.280 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-18 01:37:20.320 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:37:20.320 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 01:37:20.320 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 386 ms overall
17-03-18 01:37:20.410 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 01:37:20.410 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:20.410 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:37:20.410 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 01:37:20.420 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:37:20.420 -07 000000455 INF: Autofocus start
17-03-18 01:37:20.420 -07 000000455 INF: MeasureProfile start
17-03-18 01:37:20.420 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:37:20.430 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:37:20.430 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:37:20.440 -07 000000455 INF: MeasureProfile done
17-03-18 01:37:20.440 -07 000000455 INF: X=16  Z correction [um]=0.01042744
17-03-18 01:37:20.440 -07 000000455 INF: Autofocus finished
17-03-18 01:37:20.630 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:37:20.630 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:37:20.630 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.173740675969878. ----------
17-03-18 01:37:20.630 -07 000000610 INF: Cycle	89	Tile	14	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:37:20.640 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36464, sync = True, waitForSettling = True)
17-03-18 01:37:20.640 -07 000000610 INF: Z Motor: Moving to -0.166921 mm, started at -0.173741 mm, distance = 6.82 um
17-03-18 01:37:20.640 -07 000000610 INF: FPGA: Xmit ZDACW 36464\n [Z Motor]
17-03-18 01:37:20.640 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 01:37:20.650 -07 000000610 INF: FPGA: 'ZDACW 36464' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:37:20.650 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:37:20.650 -07 000000474 INF: FPGA: Recv ZDACR 36464
17-03-18 01:37:20.660 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:20.660 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:37:20.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:20.810 -07 000000479 INF: FPGA: Recv ZSGSRD 35276
17-03-18 01:37:20.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:20.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:20.820 -07 000000444 INF: FPGA: Recv ZSGSRD 35277
17-03-18 01:37:20.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:20.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:20.830 -07 000000629 INF: FPGA: Recv ZSGSRD 35276
17-03-18 01:37:20.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:20.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:20.840 -07 000000438 INF: FPGA: Recv ZSGSRD 35275
17-03-18 01:37:20.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:20.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:20.850 -07 000000629 INF: FPGA: Recv ZSGSRD 35277
17-03-18 01:37:20.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:20.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:20.860 -07 000000438 INF: FPGA: Recv ZSGSRD 35275
17-03-18 01:37:20.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:20.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:20.870 -07 000000626 INF: FPGA: Recv ZSGSRD 35271
17-03-18 01:37:20.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:20.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:20.880 -07 000000444 INF: FPGA: Recv ZSGSRD 35277
17-03-18 01:37:20.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:20.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:20.890 -07 000000626 INF: FPGA: Recv ZSGSRD 35277
17-03-18 01:37:20.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:20.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:20.900 -07 000000455 INF: FPGA: Recv ZSGSRD 35277
17-03-18 01:37:20.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:20.910 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:20.910 -07 000000447 INF: FPGA: Recv ZPIEZORD 30959
17-03-18 01:37:20.920 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:20.920 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.564 V. Piezo Error = -9.5 V.
17-03-18 01:37:20.920 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35276 (-166.1 uncal um), Error = 0.8 uncal um, Median = 35276 (-166.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35271 (-166.0 uncal um), Max = 35277 (-166.1 uncal um), Pos Noise = 1 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:37:20.920 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35276, posNoise = 1, negNoise = 5
17-03-18 01:37:20.920 -07 000000610 INF: Z Motor: After move to -0.166921, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:20.920 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:37:20.920 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:37:20.920 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:37:20.920 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:37:20.920 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:37:20.920 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:37:20.920 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:37:20.920 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:37:20.920 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:37:20.920 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:37:20.920 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:37:20.920 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:37:20.920 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:37:20.930 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:37:20.930 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:37:20.930 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:37:20.930 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:37:20.940 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:37:20.940 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:37:20.940 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:37:20.940 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:37:20.940 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36641 150\n [Camera]
17-03-18 01:37:21.140 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:37:21.540 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:37:21.540 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:37:21.540 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:37:21.540 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:37:21.540 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 01:37:21.540 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:37:21.540 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:37:21.540 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:37:21.540 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:37:21.540 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 01:37:21.730 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36641 776
17-03-18 01:37:21.880 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:37:21.940 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:37:21.940 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:37:21.940 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:21.940 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:37:21.940 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:37:21.940 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:21.940 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:37:21.940 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:37:21.950 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:37:21.950 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:37:22.070 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:37:22.070 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:37:22.070 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:37:22.070 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:37:22.070 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 01:37:22.070 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:37:22.070 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:37:22.070 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:37:22.070 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:37:22.070 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 01:37:22.260 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:37:22.260 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:37:22.260 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36641 150' command took 2 ms to send, 1302 ms to get response, and 1314 ms overall
17-03-18 01:37:22.260 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.167519
17-03-18 01:37:22.260 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.16752 mm
17-03-18 01:37:22.260 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:37:22.260 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 01:37:22.260 -07 000000430 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 01:37:22.260 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:22.260 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 36594, sync = True, waitForSettling = False)
17-03-18 01:37:22.260 -07 000000455 INF: Z Motor: Moving to -0.167517 mm, started at -0.166944 mm, distance = -0.57 um
17-03-18 01:37:22.270 -07 000000455 INF: FPGA: Xmit ZDACW 36594\n [Z Motor]
17-03-18 01:37:22.270 -07 000000569 INF: FPGA: Recv YRDPOS 144770
17-03-18 01:37:22.270 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:37:22.270 -07 000000430 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:22.270 -07 000000430 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:37:22.270 -07 000000430 INF: Y Motor: Moving 1351 steps-29
17-03-18 01:37:22.270 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 01:37:22.280 -07 000000455 INF: FPGA: 'ZDACW 36594' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:37:22.280 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:37:22.280 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:37:22.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:37:22.280 -07 000000569 INF: FPGA: Recv ZDACR 36594
17-03-18 01:37:22.290 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:37:22.290 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:22.290 -07 000000455 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-18 01:37:22.460 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 01:37:22.460 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:37:22.460 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:22.460 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 01:37:22.460 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:37:22.460 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:22.470 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:37:22.470 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 01:37:22.470 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:37:22.470 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 01:37:22.660 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 01:37:22.660 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:37:22.710 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:22.710 -07 000000447 INF: FPGA: Recv YRDPOS 146470
17-03-18 01:37:22.720 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:37:22.720 -07 000000430 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:22.720 -07 000000430 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 01:37:22.720 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 01:37:23.670 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:23.670 -07 000000626 INF: FPGA: Recv YRDPOS 146471
17-03-18 01:37:23.680 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:23.680 -07 000000430 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:23.700 -07 000000430 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:37:23.700 -07 000000430 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:37:23.700 -07 000000430 INF: Y Motor: Moved to 71.5190 after 1439 ms (table move)
17-03-18 01:37:23.700 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167517 mm (DAC = 36594)
17-03-18 01:37:23.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:23.710 -07 000000447 INF: FPGA: Recv ZSGSRD 35362
17-03-18 01:37:23.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:37:23.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:23.710 -07 000000626 INF: FPGA: Recv ZSGSRD 35374
17-03-18 01:37:23.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:37:23.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:23.720 -07 000000569 INF: FPGA: Recv ZSGSRD 35375
17-03-18 01:37:23.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:23.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:23.730 -07 000000447 INF: FPGA: Recv ZSGSRD 35368
17-03-18 01:37:23.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:23.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:23.740 -07 000000626 INF: FPGA: Recv ZSGSRD 35372
17-03-18 01:37:23.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:23.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:23.750 -07 000000455 INF: FPGA: Recv ZSGSRD 35366
17-03-18 01:37:23.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:23.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:23.770 -07 000000569 INF: FPGA: Recv ZSGSRD 35366
17-03-18 01:37:23.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:37:23.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:23.780 -07 000000455 INF: FPGA: Recv ZSGSRD 35357
17-03-18 01:37:23.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:23.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:23.790 -07 000000455 INF: FPGA: Recv ZSGSRD 35364
17-03-18 01:37:23.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:23.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:23.800 -07 000000447 INF: FPGA: Recv ZSGSRD 35369
17-03-18 01:37:23.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:23.810 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:23.810 -07 000000626 INF: FPGA: Recv ZPIEZORD 31145
17-03-18 01:37:23.820 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:23.820 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.584 V. Piezo Error = -9.3 V.
17-03-18 01:37:23.820 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35367 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35367 (-166.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35357 (-166.6 uncal um), Max = 35375 (-166.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 01:37:23.820 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35367, posNoise = 8, negNoise = 10
17-03-18 01:37:23.820 -07 000000610 INF: Z Motor: After move to -0.167517, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:23.820 -07 000000610 INF: Z Motor: Settle wait time = 1441 ms, measure time = 113 ms (allowed 150 ms), total time = 1554 ms
17-03-18 01:37:23.820 -07 000000610 INF: Z Motor: Waiting extra 37 ms after reading position to reach expected total of 150 ms
17-03-18 01:37:23.860 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-18 01:37:23.860 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:37:23.860 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.167528462828795. ----------
17-03-18 01:37:23.860 -07 000000610 INF: Cycle	89	Tile	15	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:37:23.860 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36418, sync = True, waitForSettling = True)
17-03-18 01:37:23.860 -07 000000610 INF: Z Motor: Moving to -0.166711 mm, started at -0.167528 mm, distance = 0.82 um
17-03-18 01:37:23.860 -07 000000610 INF: FPGA: Xmit ZDACW 36418\n [Z Motor]
17-03-18 01:37:23.860 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:37:23.870 -07 000000610 INF: FPGA: 'ZDACW 36418' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:37:23.870 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:37:23.870 -07 000000455 INF: FPGA: Recv ZDACR 36418
17-03-18 01:37:23.880 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:23.880 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:37:24.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:24.030 -07 000000626 INF: FPGA: Recv ZSGSRD 35235
17-03-18 01:37:24.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:24.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:24.040 -07 000000455 INF: FPGA: Recv ZSGSRD 35244
17-03-18 01:37:24.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:24.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:24.050 -07 000000626 INF: FPGA: Recv ZSGSRD 35247
17-03-18 01:37:24.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:24.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:24.060 -07 000000430 INF: FPGA: Recv ZSGSRD 35242
17-03-18 01:37:24.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:24.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:24.080 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 4.011254,
17-03-18 01:37:24.080 -07 000000626 INF: FPGA: Recv ZSGSRD 35242
17-03-18 01:37:24.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:37:24.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:24.090 -07 000000569 INF: FPGA: Recv ZSGSRD 35245
17-03-18 01:37:24.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:24.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:24.120 -07 000000625 INF: FPGA: Recv ZSGSRD 35245
17-03-18 01:37:24.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:37:24.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:24.150 -07 000000430 INF: FPGA: Recv ZSGSRD 35245
17-03-18 01:37:24.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:37:24.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:24.160 -07 000000569 INF: FPGA: Recv ZSGSRD 35240
17-03-18 01:37:24.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:24.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:24.170 -07 000000626 INF: FPGA: Recv ZSGSRD 35245
17-03-18 01:37:24.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:24.180 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:24.180 -07 000000447 INF: FPGA: Recv ZPIEZORD 30926
17-03-18 01:37:24.190 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:24.190 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.557 V. Piezo Error = -9.5 V.
17-03-18 01:37:24.190 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35243 (-165.9 uncal um), Error = 0.8 uncal um, Median = 35244 (-165.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35235 (-165.8 uncal um), Max = 35247 (-165.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:37:24.190 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35243, posNoise = 4, negNoise = 8
17-03-18 01:37:24.190 -07 000000610 INF: Z Motor: After move to -0.166711, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:24.190 -07 000000610 INF: Z Motor: MoveAbsStepped took 328 ms)
17-03-18 01:37:24.190 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:37:24.190 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:37:24.190 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:37:24.190 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:37:24.190 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:37:24.190 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:37:24.190 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:37:24.190 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:37:24.190 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:37:24.190 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:37:24.190 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:37:24.190 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:37:24.200 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:37:24.200 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:37:24.200 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:37:24.200 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:37:24.210 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:37:24.210 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:37:24.210 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:37:24.210 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:37:24.220 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36594 150\n [Camera]
17-03-18 01:37:24.420 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:37:24.810 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:37:24.810 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:37:24.810 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:37:24.810 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:37:24.810 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 01:37:24.810 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:37:24.810 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:37:24.810 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:37:24.810 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:37:24.810 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 01:37:25.000 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36594 776
17-03-18 01:37:25.150 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:37:25.210 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:37:25.210 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:37:25.210 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:25.210 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:37:25.210 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:37:25.210 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:25.210 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:37:25.210 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:37:25.210 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:37:25.220 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:37:25.340 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 01:37:25.340 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 01:37:25.340 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:37:25.340 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:37:25.340 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 01:37:25.340 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 01:37:25.340 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 01:37:25.340 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:37:25.340 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:37:25.340 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 01:37:25.530 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:37:25.530 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:37:25.530 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36594 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-18 01:37:25.530 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.167066
17-03-18 01:37:25.530 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.16707 mm
17-03-18 01:37:25.530 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:37:25.530 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 01:37:25.540 -07 000000455 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 01:37:25.540 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 36495, sync = True, waitForSettling = False)
17-03-18 01:37:25.540 -07 000000430 INF: Z Motor: Moving to -0.167063 mm, started at -0.166732 mm, distance = -0.33 um
17-03-18 01:37:25.550 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:25.550 -07 000000618 INF: FPGA: Recv YRDPOS 146471
17-03-18 01:37:25.560 -07 000000430 INF: FPGA: Xmit ZDACW 36495\n [Z Motor]
17-03-18 01:37:25.560 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:37:25.560 -07 000000455 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:25.560 -07 000000455 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:37:25.560 -07 000000455 INF: Y Motor: Moving 1350 steps-29
17-03-18 01:37:25.560 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 01:37:25.570 -07 000000430 INF: FPGA: 'ZDACW 36495' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:37:25.580 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:37:25.590 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:37:25.590 -07 000000629 INF: FPGA: Recv ZDACR 36495
17-03-18 01:37:25.600 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:37:25.600 -07 000000430 INF: Z Motor: MoveAbsStepped took 59 ms (did NOT wait for settling yet))
17-03-18 01:37:25.730 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 01:37:25.730 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 01:37:25.730 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:25.730 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:37:25.730 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 01:37:25.730 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 01:37:25.730 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:25.740 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:37:25.740 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:37:25.740 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:37:25.960 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 01:37:25.960 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 401 ms overall
17-03-18 01:37:26.000 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:26.000 -07 000000479 INF: FPGA: Recv YRDPOS 148172
17-03-18 01:37:26.010 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:37:26.010 -07 000000455 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:26.010 -07 000000455 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 01:37:26.010 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.844 mm, average velocity = 2.104 mm/sec
17-03-18 01:37:26.960 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:26.960 -07 000000430 INF: FPGA: Recv YRDPOS 148172
17-03-18 01:37:26.970 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:26.970 -07 000000455 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:26.990 -07 000000455 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:37:26.990 -07 000000455 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:37:26.990 -07 000000455 INF: Y Motor: Moved to 72.3496 after 1457 ms (table move)
17-03-18 01:37:27.000 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167063 mm (DAC = 36495)
17-03-18 01:37:27.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:27.000 -07 000000447 INF: FPGA: Recv ZSGSRD 35301
17-03-18 01:37:27.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:37:27.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:27.010 -07 000000447 INF: FPGA: Recv ZSGSRD 35297
17-03-18 01:37:27.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:27.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:27.020 -07 000000455 INF: FPGA: Recv ZSGSRD 35290
17-03-18 01:37:27.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:27.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:27.030 -07 000000447 INF: FPGA: Recv ZSGSRD 35297
17-03-18 01:37:27.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:27.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:27.040 -07 000000447 INF: FPGA: Recv ZSGSRD 35295
17-03-18 01:37:27.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:27.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:27.050 -07 000000447 INF: FPGA: Recv ZSGSRD 35296
17-03-18 01:37:27.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:27.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:27.060 -07 000000430 INF: FPGA: Recv ZSGSRD 35300
17-03-18 01:37:27.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:27.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:27.070 -07 000000625 INF: FPGA: Recv ZSGSRD 35294
17-03-18 01:37:27.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:27.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:27.080 -07 000000625 INF: FPGA: Recv ZSGSRD 35294
17-03-18 01:37:27.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:27.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:27.090 -07 000000447 INF: FPGA: Recv ZSGSRD 35293
17-03-18 01:37:27.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:27.100 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:27.100 -07 000000430 INF: FPGA: Recv ZPIEZORD 31055
17-03-18 01:37:27.110 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:27.110 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.569 V. Piezo Error = -9.3 V.
17-03-18 01:37:27.110 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35296 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35296 (-166.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35290 (-166.2 uncal um), Max = 35301 (-166.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:37:27.110 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35296, posNoise = 5, negNoise = 6
17-03-18 01:37:27.110 -07 000000610 INF: Z Motor: After move to -0.167063, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:27.110 -07 000000610 INF: Z Motor: Settle wait time = 1460 ms, measure time = 110 ms (allowed 150 ms), total time = 1570 ms
17-03-18 01:37:27.110 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:37:27.150 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 01:37:27.150 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:37:27.150 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.16707234376673. ----------
17-03-18 01:37:27.150 -07 000000610 INF: Cycle	89	Tile	16	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:37:27.150 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36319, sync = True, waitForSettling = True)
17-03-18 01:37:27.150 -07 000000610 INF: Z Motor: Moving to -0.166258 mm, started at -0.167072 mm, distance = 0.81 um
17-03-18 01:37:27.150 -07 000000610 INF: FPGA: Xmit ZDACW 36319\n [Z Motor]
17-03-18 01:37:27.150 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:37:27.160 -07 000000610 INF: FPGA: 'ZDACW 36319' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:37:27.160 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:37:27.160 -07 000000447 INF: FPGA: Recv ZDACR 36319
17-03-18 01:37:27.170 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:27.170 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:37:27.280 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:37:27.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:37:27.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:27.320 -07 000000430 INF: FPGA: Recv ZSGSRD 35167
17-03-18 01:37:27.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:27.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:27.330 -07 000000455 INF: FPGA: Recv ZSGSRD 35179
17-03-18 01:37:27.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:27.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:27.340 -07 000000430 INF: FPGA: Recv ZSGSRD 35169
17-03-18 01:37:27.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:27.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:27.350 -07 000000447 INF: FPGA: Recv ZSGSRD 35174
17-03-18 01:37:27.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:27.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:27.360 -07 000000479 INF: FPGA: Recv ZSGSRD 35171
17-03-18 01:37:27.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:27.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:27.370 -07 000000479 INF: FPGA: Recv ZSGSRD 35173
17-03-18 01:37:27.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:27.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:27.380 -07 000000625 INF: FPGA: Recv ZSGSRD 35175
17-03-18 01:37:27.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:27.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:27.390 -07 000000447 INF: FPGA: Recv ZSGSRD 35170
17-03-18 01:37:27.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:27.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:27.400 -07 000000455 INF: FPGA: Recv ZSGSRD 35167
17-03-18 01:37:27.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:27.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:27.410 -07 000000479 INF: FPGA: Recv ZSGSRD 35172
17-03-18 01:37:27.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:27.420 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:27.420 -07 000000479 INF: FPGA: Recv ZPIEZORD 30869
17-03-18 01:37:27.430 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:27.430 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.542 V. Piezo Error = -9.5 V.
17-03-18 01:37:27.430 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35172 (-165.4 uncal um), Error = 0.8 uncal um, Median = 35172 (-165.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35167 (-165.4 uncal um), Max = 35179 (-165.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:37:27.430 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35172, posNoise = 7, negNoise = 5
17-03-18 01:37:27.430 -07 000000610 INF: Z Motor: After move to -0.166258, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:27.430 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 01:37:27.430 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:37:27.430 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:37:27.430 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:37:27.430 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:37:27.430 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:37:27.430 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:37:27.430 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:37:27.430 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:37:27.430 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:37:27.430 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:37:27.430 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:37:27.430 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:37:27.440 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:37:27.440 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:37:27.440 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:37:27.440 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:37:27.450 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:37:27.450 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:37:27.450 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:37:27.450 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:37:27.450 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36495 150\n [Camera]
17-03-18 01:37:27.650 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:37:28.050 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:37:28.050 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:37:28.050 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:37:28.050 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:37:28.050 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 01:37:28.050 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:37:28.050 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:37:28.050 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:37:28.050 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:37:28.050 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 01:37:28.240 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36495 779
17-03-18 01:37:28.390 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:37:28.420 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 01:37:28.420 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 01:37:28.420 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:28.420 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 01:37:28.420 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 01:37:28.420 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:28.430 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:37:28.430 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:37:28.430 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 01:37:28.440 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 01:37:28.580 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:37:28.580 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:37:28.580 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:37:28.580 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:37:28.580 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 01:37:28.580 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:37:28.580 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:37:28.580 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:37:28.580 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:37:28.580 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-18 01:37:28.770 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:37:28.770 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:37:28.770 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36495 150' command took 2 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-18 01:37:28.770 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.166712
17-03-18 01:37:28.770 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.16671 mm
17-03-18 01:37:28.770 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:37:28.770 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 01:37:28.770 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 36418, sync = True, waitForSettling = False)
17-03-18 01:37:28.770 -07 000000625 INF: Z Motor: Moving to -0.166711 mm, started at -0.166276 mm, distance = -0.44 um
17-03-18 01:37:28.770 -07 000000625 INF: FPGA: Xmit ZDACW 36418\n [Z Motor]
17-03-18 01:37:28.770 -07 000000618 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-18 01:37:28.780 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:28.780 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 01:37:28.780 -07 000000625 INF: FPGA: 'ZDACW 36418' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:37:28.780 -07 000000585 INF: FPGA: Recv YRDPOS 148172
17-03-18 01:37:28.790 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:28.790 -07 000000618 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:28.790 -07 000000618 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:37:28.790 -07 000000618 INF: Y Motor: Moving 1349 steps-27
17-03-18 01:37:28.790 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:37:28.790 -07 000000474 INF: FPGA: Recv ZDACR 36418
17-03-18 01:37:28.800 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:37:28.800 -07 000000625 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-18 01:37:28.800 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:37:28.960 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 01:37:28.960 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 01:37:28.960 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:28.960 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 01:37:28.960 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 01:37:28.960 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:28.960 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:37:28.960 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 01:37:28.960 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:37:28.970 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 01:37:29.170 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 01:37:29.170 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 01:37:29.220 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:29.220 -07 000000444 INF: FPGA: Recv YRDPOS 149864
17-03-18 01:37:29.230 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:37:29.230 -07 000000618 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:29.230 -07 000000618 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 01:37:29.230 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.843 mm, average velocity = 2.173 mm/sec
17-03-18 01:37:29.470 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 4.016692,
17-03-18 01:37:30.180 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:30.180 -07 000000474 INF: FPGA: Recv YRDPOS 149865
17-03-18 01:37:30.190 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:30.190 -07 000000618 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:30.210 -07 000000618 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:37:30.210 -07 000000618 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:37:30.210 -07 000000618 INF: Y Motor: Moved to 73.1763 after 1439 ms (table move)
17-03-18 01:37:30.220 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.166711 mm (DAC = 36418)
17-03-18 01:37:30.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:30.220 -07 000000585 INF: FPGA: Recv ZSGSRD 35237
17-03-18 01:37:30.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:30.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:30.230 -07 000000618 INF: FPGA: Recv ZSGSRD 35240
17-03-18 01:37:30.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:30.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:30.240 -07 000000626 INF: FPGA: Recv ZSGSRD 35231
17-03-18 01:37:30.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:30.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:30.250 -07 000000585 INF: FPGA: Recv ZSGSRD 35247
17-03-18 01:37:30.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:30.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:30.260 -07 000000626 INF: FPGA: Recv ZSGSRD 35246
17-03-18 01:37:30.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:30.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:30.270 -07 000000430 INF: FPGA: Recv ZSGSRD 35238
17-03-18 01:37:30.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:30.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:30.280 -07 000000618 INF: FPGA: Recv ZSGSRD 35238
17-03-18 01:37:30.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:30.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:30.290 -07 000000430 INF: FPGA: Recv ZSGSRD 35234
17-03-18 01:37:30.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:30.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:30.300 -07 000000618 INF: FPGA: Recv ZSGSRD 35243
17-03-18 01:37:30.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:30.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:30.310 -07 000000430 INF: FPGA: Recv ZSGSRD 35242
17-03-18 01:37:30.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:30.320 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:30.320 -07 000000618 INF: FPGA: Recv ZPIEZORD 30996
17-03-18 01:37:30.330 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:30.330 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.557 V. Piezo Error = -9.4 V.
17-03-18 01:37:30.330 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35240 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35239 (-165.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35231 (-165.8 uncal um), Max = 35247 (-165.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:37:30.330 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35240, posNoise = 7, negNoise = 9
17-03-18 01:37:30.330 -07 000000610 INF: Z Motor: After move to -0.166711, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:30.330 -07 000000610 INF: Z Motor: Settle wait time = 1441 ms, measure time = 112 ms (allowed 150 ms), total time = 1553 ms
17-03-18 01:37:30.330 -07 000000610 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-18 01:37:30.370 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-18 01:37:30.370 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:37:30.370 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.166712587886791. ----------
17-03-18 01:37:30.370 -07 000000610 INF: Cycle	89	Tile	17	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:37:30.370 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36242, sync = True, waitForSettling = True)
17-03-18 01:37:30.370 -07 000000610 INF: Z Motor: Moving to -0.165905 mm, started at -0.166713 mm, distance = 0.81 um
17-03-18 01:37:30.370 -07 000000610 INF: FPGA: Xmit ZDACW 36242\n [Z Motor]
17-03-18 01:37:30.370 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 01:37:30.380 -07 000000610 INF: FPGA: 'ZDACW 36242' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:37:30.380 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:37:30.380 -07 000000438 INF: FPGA: Recv ZDACR 36242
17-03-18 01:37:30.390 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:30.390 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:37:30.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:30.540 -07 000000618 INF: FPGA: Recv ZSGSRD 35107
17-03-18 01:37:30.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:30.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:30.550 -07 000000438 INF: FPGA: Recv ZSGSRD 35124
17-03-18 01:37:30.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:30.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:30.560 -07 000000585 INF: FPGA: Recv ZSGSRD 35115
17-03-18 01:37:30.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:30.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:30.570 -07 000000444 INF: FPGA: Recv ZSGSRD 35117
17-03-18 01:37:30.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:30.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:30.580 -07 000000618 INF: FPGA: Recv ZSGSRD 35129
17-03-18 01:37:30.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:30.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:30.590 -07 000000438 INF: FPGA: Recv ZSGSRD 35119
17-03-18 01:37:30.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:30.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:30.600 -07 000000585 INF: FPGA: Recv ZSGSRD 35112
17-03-18 01:37:30.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:30.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:30.620 -07 000000629 INF: FPGA: Recv ZSGSRD 35120
17-03-18 01:37:30.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:37:30.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:30.630 -07 000000438 INF: FPGA: Recv ZSGSRD 35120
17-03-18 01:37:30.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:30.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:30.640 -07 000000585 INF: FPGA: Recv ZSGSRD 35108
17-03-18 01:37:30.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:30.650 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:30.650 -07 000000629 INF: FPGA: Recv ZPIEZORD 30834
17-03-18 01:37:30.660 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:30.660 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.530 V. Piezo Error = -9.4 V.
17-03-18 01:37:30.660 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.9 um, Read 10 ADC samples: Avg = 35117 (-165.1 uncal um), Error = 0.8 uncal um, Median = 35118 (-165.1 uncal um), StdDev = 7 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 35107 (-165.0 uncal um), Max = 35129 (-165.1 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 01:37:30.660 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35117, posNoise = 12, negNoise = 10
17-03-18 01:37:30.660 -07 000000610 INF: Z Motor: After move to -0.165905, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:30.660 -07 000000610 INF: Z Motor: MoveAbsStepped took 286 ms)
17-03-18 01:37:30.660 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:37:30.660 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:37:30.660 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:37:30.660 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:37:30.660 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:37:30.660 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:37:30.660 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:37:30.660 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:37:30.660 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:37:30.660 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:37:30.660 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:37:30.660 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:37:30.670 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-18 01:37:30.670 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:37:30.670 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 6 ms.
17-03-18 01:37:30.670 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:37:30.690 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:37:30.690 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 25 ms.
17-03-18 01:37:30.690 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-18 01:37:30.690 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 25 ms.
17-03-18 01:37:30.690 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36418 150\n [Camera]
17-03-18 01:37:30.890 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:37:31.280 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:37:31.280 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:37:31.280 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:37:31.280 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:37:31.280 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:37:31.280 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:37:31.280 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) start.
17-03-18 01:37:31.280 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:37:31.280 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:37:31.280 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2952794160, 0x0, 418435064) start.
17-03-18 01:37:31.470 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36418 776
17-03-18 01:37:31.620 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:37:31.660 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2952794160, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 01:37:31.660 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 01:37:31.660 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:31.660 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 01:37:31.660 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 01:37:31.660 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:31.670 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:37:31.670 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:37:31.670 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 01:37:31.680 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:37:31.810 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:37:31.810 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:37:31.810 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:37:31.810 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:37:31.810 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2988216424, 0x0, 391868352) start.
17-03-18 01:37:31.810 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:37:31.810 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:37:31.810 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:37:31.810 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:37:31.810 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 3023638688, 0x0, 418435064) start.
17-03-18 01:37:32.000 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:37:32.000 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:37:32.000 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36418 150' command took 2 ms to send, 1307 ms to get response, and 1313 ms overall
17-03-18 01:37:32.000 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:37:32.010 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.165922409793354. ------
17-03-18 01:37:32.010 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17234 mm
17-03-18 01:37:32.010 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:37:32.010 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:37:32.010 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 01:37:32.010 -07 000000618 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 01:37:32.020 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:32.190 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2988216424, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 01:37:32.190 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 01:37:32.190 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:32.190 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 3023638688, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 01:37:32.190 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 01:37:32.190 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:32.200 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:37:32.200 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 01:37:32.200 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:37:32.210 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 01:37:32.210 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 37647, sync = True, waitForSettling = False)
17-03-18 01:37:32.210 -07 000000629 INF: Z Motor: Moving to -0.172337 mm, started at -0.165922 mm, distance = -6.41 um
17-03-18 01:37:32.210 -07 000000629 INF: FPGA: Xmit ZDACW 37647\n [Z Motor]
17-03-18 01:37:32.220 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:37:32.220 -07 000000585 INF: FPGA: Recv YRDPOS 149865
17-03-18 01:37:32.220 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 01:37:32.220 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 201 ms to get response, and 205 ms overall
17-03-18 01:37:32.220 -07 000000629 INF: FPGA: 'ZDACW 37647' command took 0 ms to send, 1 ms to get response, and 8 ms overall
17-03-18 01:37:32.220 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:37:32.220 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 191 ms to get response, and 203 ms overall
17-03-18 01:37:32.220 -07 000000618 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:32.220 -07 000000618 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:37:32.220 -07 000000618 INF: Y Motor: Moving 1354 steps-34
17-03-18 01:37:32.220 -07 000000585 INF: FPGA: Recv ZDACR 37647
17-03-18 01:37:32.230 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:37:32.230 -07 000000629 INF: Z Motor: MoveAbsStepped took 17 ms (did NOT wait for settling yet))
17-03-18 01:37:32.230 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:37:32.240 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:37:32.280 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:37:32.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:37:32.430 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:37:32.430 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 01:37:32.610 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 01:37:32.620 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 397 ms overall
17-03-18 01:37:32.650 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:32.650 -07 000000569 INF: FPGA: Recv YRDPOS 151569
17-03-18 01:37:32.660 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:37:32.660 -07 000000618 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:32.660 -07 000000618 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 01:37:32.660 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-18 01:37:33.610 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:33.610 -07 000000626 INF: FPGA: Recv YRDPOS 151569
17-03-18 01:37:33.620 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:33.620 -07 000000618 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:33.640 -07 000000618 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:37:33.640 -07 000000618 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:37:33.640 -07 000000618 INF: Y Motor: Moved to 74.0083 after 1624 ms (table move)
17-03-18 01:37:33.640 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172337 mm (DAC = 37647)
17-03-18 01:37:33.640 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:33.640 -07 000000569 INF: FPGA: Recv ZSGSRD 36120
17-03-18 01:37:33.650 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:37:33.650 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:33.650 -07 000000585 INF: FPGA: Recv ZSGSRD 36114
17-03-18 01:37:33.660 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:33.660 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:33.660 -07 000000569 INF: FPGA: Recv ZSGSRD 36117
17-03-18 01:37:33.670 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:33.670 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:33.670 -07 000000629 INF: FPGA: Recv ZSGSRD 36116
17-03-18 01:37:33.680 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:33.680 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:33.680 -07 000000447 INF: FPGA: Recv ZSGSRD 36117
17-03-18 01:37:33.690 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:33.690 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:33.690 -07 000000629 INF: FPGA: Recv ZSGSRD 36114
17-03-18 01:37:33.700 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:33.700 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:33.700 -07 000000626 INF: FPGA: Recv ZSGSRD 36115
17-03-18 01:37:33.710 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:33.710 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:33.710 -07 000000585 INF: FPGA: Recv ZSGSRD 36117
17-03-18 01:37:33.720 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:33.720 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:33.720 -07 000000455 INF: FPGA: Recv ZSGSRD 36116
17-03-18 01:37:33.730 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:33.730 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:33.730 -07 000000474 INF: FPGA: Recv ZSGSRD 36118
17-03-18 01:37:33.740 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:33.740 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:33.740 -07 000000455 INF: FPGA: Recv ZPIEZORD 32138
17-03-18 01:37:33.750 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:33.750 -07 000000438 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.745 V. Piezo Error = -8.8 V.
17-03-18 01:37:33.750 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36116 (-171.5 uncal um), Error = 0.9 uncal um, Median = 36116 (-171.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36114 (-171.4 uncal um), Max = 36120 (-171.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 01:37:33.750 -07 000000438 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36116, posNoise = 4, negNoise = 2
17-03-18 01:37:33.750 -07 000000438 INF: Z Motor: After move to -0.172337, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:33.750 -07 000000438 INF: Z Motor: Settle wait time = 1432 ms, measure time = 105 ms (allowed 150 ms), total time = 1537 ms
17-03-18 01:37:33.750 -07 000000438 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 01:37:33.800 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1786 ms
17-03-18 01:37:33.800 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:37:33.800 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:37:33.800 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:37:33.800 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:37:33.800 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:37:33.800 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:37:33.800 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:37:33.800 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:37:33.800 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:37:33.810 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:37:33.810 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:37:33.820 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:37:33.820 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:37:33.820 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:37:33.870 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:37:34.170 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:37:34.170 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:37:34.170 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:37:34.170 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-18 01:37:34.200 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:37:34.210 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 01:37:34.210 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 01:37:34.280 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:37:34.280 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:34.280 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:37:34.280 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:37:34.310 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:37:34.310 -07 000000585 INF: Autofocus start
17-03-18 01:37:34.310 -07 000000585 INF: MeasureProfile start
17-03-18 01:37:34.320 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:37:34.320 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:37:34.320 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:37:34.330 -07 000000585 INF: MeasureProfile done
17-03-18 01:37:34.330 -07 000000585 INF: X=48  Z correction [um]=0.1739867
17-03-18 01:37:34.330 -07 000000585 INF: Autofocus finished
17-03-18 01:37:34.520 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:37:34.520 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 01:37:34.530 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.172340197722974. ----------
17-03-18 01:37:34.530 -07 000000610 INF: Cycle	89	Tile	18	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:37:34.530 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36198, sync = True, waitForSettling = True)
17-03-18 01:37:34.530 -07 000000610 INF: Z Motor: Moving to -0.165704 mm, started at -0.172340 mm, distance = 6.64 um
17-03-18 01:37:34.530 -07 000000610 INF: FPGA: Xmit ZDACW 36198\n [Z Motor]
17-03-18 01:37:34.530 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 01:37:34.540 -07 000000610 INF: FPGA: 'ZDACW 36198' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:37:34.540 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:37:34.540 -07 000000626 INF: FPGA: Recv ZDACR 36198
17-03-18 01:37:34.550 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:34.550 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:37:34.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:34.700 -07 000000618 INF: FPGA: Recv ZSGSRD 35085
17-03-18 01:37:34.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:34.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:34.710 -07 000000561 INF: FPGA: Recv ZSGSRD 35083
17-03-18 01:37:34.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:34.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:34.720 -07 000000430 INF: FPGA: Recv ZSGSRD 35083
17-03-18 01:37:34.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:34.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:34.730 -07 000000479 INF: FPGA: Recv ZSGSRD 35085
17-03-18 01:37:34.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:34.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:34.740 -07 000000455 INF: FPGA: Recv ZSGSRD 35085
17-03-18 01:37:34.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:34.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:34.750 -07 000000474 INF: FPGA: Recv ZSGSRD 35092
17-03-18 01:37:34.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:34.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:34.760 -07 000000430 INF: FPGA: Recv ZSGSRD 35079
17-03-18 01:37:34.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:34.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:34.770 -07 000000447 INF: FPGA: Recv ZSGSRD 35087
17-03-18 01:37:34.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:34.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:34.780 -07 000000626 INF: FPGA: Recv ZSGSRD 35085
17-03-18 01:37:34.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:34.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:34.790 -07 000000479 INF: FPGA: Recv ZSGSRD 35084
17-03-18 01:37:34.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:34.800 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:34.800 -07 000000569 INF: FPGA: Recv ZPIEZORD 30795
17-03-18 01:37:34.810 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:34.810 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.523 V. Piezo Error = -9.4 V.
17-03-18 01:37:34.810 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.7 um, Read 10 ADC samples: Avg = 35085 (-164.9 uncal um), Error = 0.9 uncal um, Median = 35085 (-164.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35079 (-164.8 uncal um), Max = 35092 (-164.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:37:34.810 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35085, posNoise = 7, negNoise = 6
17-03-18 01:37:34.810 -07 000000610 INF: Z Motor: After move to -0.165704, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:34.810 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:37:34.810 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:37:34.810 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:37:34.810 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:37:34.810 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:37:34.810 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:37:34.810 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:37:34.810 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:37:34.810 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:37:34.810 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:37:34.810 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:37:34.810 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:37:34.810 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:37:34.820 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:37:34.820 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:37:34.820 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:37:34.820 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:37:34.820 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:37:34.820 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:37:34.830 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 3.996267,
17-03-18 01:37:34.830 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 01:37:34.830 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:37:34.840 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36374 150\n [Camera]
17-03-18 01:37:35.030 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:37:35.430 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:37:35.430 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:37:35.430 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:37:35.430 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:37:35.430 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 3087011888, 0x0, 391868352) start.
17-03-18 01:37:35.430 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:37:35.430 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:37:35.430 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:37:35.430 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:37:35.430 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 3122434152, 0x0, 418435064) start.
17-03-18 01:37:35.620 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36374 776
17-03-18 01:37:35.770 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:37:35.830 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 3087011888, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:37:35.830 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:37:35.830 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:35.830 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:37:35.830 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:37:35.830 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 3122434152, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:37:35.830 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:37:35.830 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:35.830 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:37:35.840 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:37:35.960 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:37:35.960 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:37:35.960 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:37:36.110 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:37:36.110 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:37:36.120 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:37:36.120 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:37:36.120 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:37:36.130 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:37:36.130 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) start.
17-03-18 01:37:36.150 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:37:36.150 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:37:36.150 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36374 150' command took 2 ms to send, 1304 ms to get response, and 1319 ms overall
17-03-18 01:37:36.150 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.165663
17-03-18 01:37:36.150 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.16566 mm
17-03-18 01:37:36.150 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:37:36.150 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 01:37:36.150 -07 000000618 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 01:37:36.150 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:36.150 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 36189, sync = True, waitForSettling = False)
17-03-18 01:37:36.150 -07 000000561 INF: Z Motor: Moving to -0.165663 mm, started at -0.165717 mm, distance = 0.05 um
17-03-18 01:37:36.160 -07 000000561 INF: FPGA: Xmit ZDACW 36189\n [Z Motor]
17-03-18 01:37:36.160 -07 000000569 INF: FPGA: Recv YRDPOS 151569
17-03-18 01:37:36.160 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-18 01:37:36.160 -07 000000618 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:36.160 -07 000000618 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:37:36.160 -07 000000618 INF: Y Motor: Moving 1351 steps-29
17-03-18 01:37:36.160 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 01:37:36.170 -07 000000561 INF: FPGA: 'ZDACW 36189' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:36.170 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:37:36.170 -07 000000569 INF: FPGA: Recv ZDACR 36189
17-03-18 01:37:36.180 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:37:36.180 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:36.180 -07 000000561 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-18 01:37:36.520 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:37:36.520 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:37:36.520 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:36.520 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 01:37:36.520 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:37:36.520 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:36.530 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:37:36.530 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 566 ms.
17-03-18 01:37:36.530 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:37:36.530 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 01:37:36.550 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 01:37:36.550 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 01:37:36.580 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:36.580 -07 000000561 INF: FPGA: Recv YRDPOS 153255
17-03-18 01:37:36.590 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:37:36.590 -07 000000618 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:36.590 -07 000000618 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-18 01:37:36.590 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.148 mm/sec
17-03-18 01:37:37.280 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:37:37.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:37:37.540 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:37.540 -07 000000430 INF: FPGA: Recv YRDPOS 153255
17-03-18 01:37:37.550 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:37.550 -07 000000618 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:37.560 -07 000000618 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:37:37.560 -07 000000618 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:37:37.560 -07 000000618 INF: Y Motor: Moved to 74.8315 after 1409 ms (table move)
17-03-18 01:37:37.570 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.165663 mm (DAC = 36189)
17-03-18 01:37:37.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:37.570 -07 000000430 INF: FPGA: Recv ZSGSRD 35083
17-03-18 01:37:37.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:37.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:37.580 -07 000000629 INF: FPGA: Recv ZSGSRD 35082
17-03-18 01:37:37.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:37.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:37.590 -07 000000430 INF: FPGA: Recv ZSGSRD 35071
17-03-18 01:37:37.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:37.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:37.600 -07 000000629 INF: FPGA: Recv ZSGSRD 35076
17-03-18 01:37:37.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:37.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:37.610 -07 000000629 INF: FPGA: Recv ZSGSRD 35078
17-03-18 01:37:37.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:37.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:37.620 -07 000000629 INF: FPGA: Recv ZSGSRD 35080
17-03-18 01:37:37.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:37.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:37.630 -07 000000430 INF: FPGA: Recv ZSGSRD 35090
17-03-18 01:37:37.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:37.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:37.640 -07 000000561 INF: FPGA: Recv ZSGSRD 35072
17-03-18 01:37:37.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:37.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:37.650 -07 000000629 INF: FPGA: Recv ZSGSRD 35075
17-03-18 01:37:37.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:37.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:37.660 -07 000000455 INF: FPGA: Recv ZSGSRD 35082
17-03-18 01:37:37.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:37.670 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:37.670 -07 000000561 INF: FPGA: Recv ZPIEZORD 30803
17-03-18 01:37:37.680 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:37.680 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.522 V. Piezo Error = -9.4 V.
17-03-18 01:37:37.680 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.7 um, Read 10 ADC samples: Avg = 35079 (-164.8 uncal um), Error = 0.8 uncal um, Median = 35079 (-164.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35071 (-164.8 uncal um), Max = 35090 (-164.9 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:37:37.680 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35079, posNoise = 11, negNoise = 8
17-03-18 01:37:37.680 -07 000000610 INF: Z Motor: After move to -0.165663, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:37.680 -07 000000610 INF: Z Motor: Settle wait time = 1411 ms, measure time = 110 ms (allowed 150 ms), total time = 1521 ms
17-03-18 01:37:37.680 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:37:37.720 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1563 ms
17-03-18 01:37:37.720 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:37:37.720 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.165678289731968. ----------
17-03-18 01:37:37.720 -07 000000610 INF: Cycle	89	Tile	19	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:37:37.720 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36012, sync = True, waitForSettling = True)
17-03-18 01:37:37.720 -07 000000610 INF: Z Motor: Moving to -0.164852 mm, started at -0.165678 mm, distance = 0.83 um
17-03-18 01:37:37.720 -07 000000610 INF: FPGA: Xmit ZDACW 36012\n [Z Motor]
17-03-18 01:37:37.720 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 01:37:37.730 -07 000000610 INF: FPGA: 'ZDACW 36012' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:37:37.730 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:37:37.730 -07 000000629 INF: FPGA: Recv ZDACR 36012
17-03-18 01:37:37.740 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:37.740 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:37:37.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:37.890 -07 000000455 INF: FPGA: Recv ZSGSRD 34954
17-03-18 01:37:37.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:37.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:37.900 -07 000000569 INF: FPGA: Recv ZSGSRD 34951
17-03-18 01:37:37.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:37.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:37.910 -07 000000561 INF: FPGA: Recv ZSGSRD 34949
17-03-18 01:37:37.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:37.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:37.920 -07 000000430 INF: FPGA: Recv ZSGSRD 34945
17-03-18 01:37:37.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:37.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:37.930 -07 000000561 INF: FPGA: Recv ZSGSRD 34956
17-03-18 01:37:37.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:37.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:37.940 -07 000000618 INF: FPGA: Recv ZSGSRD 34953
17-03-18 01:37:37.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:37.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:37.950 -07 000000430 INF: FPGA: Recv ZSGSRD 34953
17-03-18 01:37:37.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:37.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:37.960 -07 000000569 INF: FPGA: Recv ZSGSRD 34949
17-03-18 01:37:37.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:37.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:37.970 -07 000000455 INF: FPGA: Recv ZSGSRD 34955
17-03-18 01:37:37.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:37.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:37.980 -07 000000561 INF: FPGA: Recv ZSGSRD 34954
17-03-18 01:37:37.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:37.990 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:37.990 -07 000000618 INF: FPGA: Recv ZPIEZORD 30642
17-03-18 01:37:38.000 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:38.000 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.495 V. Piezo Error = -9.5 V.
17-03-18 01:37:38.000 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.9 um, Read 10 ADC samples: Avg = 34952 (-164.0 uncal um), Error = 0.9 uncal um, Median = 34953 (-164.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 34945 (-164.0 uncal um), Max = 34956 (-164.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:37:38.000 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34952, posNoise = 4, negNoise = 7
17-03-18 01:37:38.000 -07 000000610 INF: Z Motor: After move to -0.164852, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:38.000 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 01:37:38.000 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:37:38.000 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:37:38.000 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:37:38.000 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:37:38.000 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:37:38.000 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:37:38.000 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:37:38.000 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:37:38.000 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:37:38.000 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:37:38.000 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:37:38.000 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:37:38.010 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:37:38.010 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:37:38.010 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:37:38.010 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:37:38.020 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:37:38.020 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:37:38.020 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:37:38.020 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:37:38.020 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36189 150\n [Camera]
17-03-18 01:37:38.220 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:37:38.610 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:37:38.610 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:37:38.610 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:37:38.610 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:37:38.610 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:37:38.610 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:37:38.610 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:37:38.610 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:37:38.620 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:37:38.620 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1475218192, 0x0, 391868352) start.
17-03-18 01:37:38.800 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36189 776
17-03-18 01:37:38.950 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:37:39.010 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 01:37:39.010 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:37:39.010 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:39.010 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:37:39.010 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1475218192, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:37:39.020 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:37:39.020 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:39.020 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:37:39.020 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 01:37:39.020 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 01:37:39.140 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 01:37:39.140 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 01:37:39.140 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:37:39.260 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 01:37:39.260 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 01:37:39.260 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:37:39.260 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:37:39.260 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:37:39.270 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:37:39.270 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) start.
17-03-18 01:37:39.330 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:37:39.330 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:37:39.330 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36189 150' command took 2 ms to send, 1307 ms to get response, and 1314 ms overall
17-03-18 01:37:39.650 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 01:37:39.650 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 01:37:39.650 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:39.660 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 01:37:39.660 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:37:39.660 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:39.660 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:37:39.660 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:37:39.660 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms.
17-03-18 01:37:39.660 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 01:37:39.660 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 01:37:39.700 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 01:37:39.700 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 01:37:39.750 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 01:37:39.750 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 01:37:39.750 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 01:37:39.750 -07 000000430 INF: FPGA: Recv EMCUR 
17-03-18 01:37:39.760 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:37:39.760 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 01:37:40.200 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 3.98264,
17-03-18 01:37:40.260 -07 000000629 INF: FPGA: Recv EMIN
17-03-18 01:37:40.260 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 495 ms to get response, and 505 ms overall
17-03-18 01:37:40.260 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 01:37:40.260 -07 000000455 INF: FPGA: Recv EMCUR 
17-03-18 01:37:40.270 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:37:40.270 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:37:40.270 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.164862414789964. ------
17-03-18 01:37:40.270 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:37:40.270 -07 000000430 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13948 mm
17-03-18 01:37:40.270 -07 000000430 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:37:40.270 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 01:37:40.270 -07 000000474 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-18 01:37:40.270 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 30470, sync = True, waitForSettling = False)
17-03-18 01:37:40.270 -07 000000629 INF: Z Motor: Moving to -0.139483 mm, started at -0.164862 mm, distance = 25.38 um
17-03-18 01:37:40.270 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:37:40.280 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:37:40.280 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:40.280 -07 000000585 INF: FPGA: Recv YRDPOS 153257
17-03-18 01:37:40.290 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:37:40.290 -07 000000474 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:40.290 -07 000000629 INF: FPGA: Xmit ZDACW 30470\n [Z Motor]
17-03-18 01:37:40.290 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 01:37:40.290 -07 000000474 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 01:37:40.290 -07 000000474 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 01:37:40.300 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:37:40.300 -07 000000629 INF: FPGA: 'ZDACW 30470' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 01:37:40.310 -07 000000474 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 01:37:40.320 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:37:40.320 -07 000000626 INF: FPGA: Recv ZDACR 30470
17-03-18 01:37:40.330 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:37:40.330 -07 000000629 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 01:37:40.500 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:37:40.500 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:37:41.930 -07 000000561 INF: FPGA: Recv YMVTO 122703 23904
17-03-18 01:37:41.930 -07 000000474 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1640 ms overall
17-03-18 01:37:41.930 -07 000000474 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 01:37:41.930 -07 000000474 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23904 steps (14.940 mm). Slippage = 0.020 mm (0.00%).
17-03-18 01:37:41.930 -07 000000474 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1641 ms, distance = 14.919 mm, average velocity = 9.091 mm/sec
17-03-18 01:37:42.280 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:37:42.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:37:44.780 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:44.780 -07 000000561 INF: FPGA: Recv YRDPOS 122698
17-03-18 01:37:44.790 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:44.790 -07 000000474 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:44.820 -07 000000474 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:37:44.820 -07 000000474 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-18 01:37:44.820 -07 000000474 INF: Y Motor: Moved to 59.9111 after 4546 ms
17-03-18 01:37:44.820 -07 000000430 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139483 mm (DAC = 30470)
17-03-18 01:37:44.820 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:44.830 -07 000000618 INF: FPGA: Recv ZSGSRD 31001
17-03-18 01:37:44.830 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:37:44.830 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:44.830 -07 000000618 INF: FPGA: Recv ZSGSRD 31000
17-03-18 01:37:44.840 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:37:44.840 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:44.840 -07 000000474 INF: FPGA: Recv ZSGSRD 30999
17-03-18 01:37:44.850 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:44.850 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:44.850 -07 000000474 INF: FPGA: Recv ZSGSRD 31001
17-03-18 01:37:44.860 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:44.860 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:44.860 -07 000000561 INF: FPGA: Recv ZSGSRD 31003
17-03-18 01:37:44.870 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:44.870 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:44.870 -07 000000626 INF: FPGA: Recv ZSGSRD 31002
17-03-18 01:37:44.880 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:44.880 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:44.880 -07 000000561 INF: FPGA: Recv ZSGSRD 31005
17-03-18 01:37:44.890 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:44.890 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:44.890 -07 000000626 INF: FPGA: Recv ZSGSRD 31009
17-03-18 01:37:44.900 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:44.900 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:44.900 -07 000000561 INF: FPGA: Recv ZSGSRD 30998
17-03-18 01:37:44.910 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:44.910 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:44.910 -07 000000618 INF: FPGA: Recv ZSGSRD 31002
17-03-18 01:37:44.920 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:44.920 -07 000000430 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:44.920 -07 000000561 INF: FPGA: Recv ZPIEZORD 26481
17-03-18 01:37:44.930 -07 000000430 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:44.930 -07 000000430 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.649 V. Piezo Error = -9.9 V.
17-03-18 01:37:44.930 -07 000000430 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.5 um, Read 10 ADC samples: Avg = 31002 (-138.7 uncal um), Error = 0.8 uncal um, Median = 31002 (-138.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30998 (-138.7 uncal um), Max = 31009 (-138.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:37:44.930 -07 000000430 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31002, posNoise = 7, negNoise = 4
17-03-18 01:37:44.930 -07 000000430 INF: Z Motor: After move to -0.139483, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:44.930 -07 000000430 INF: Z Motor: Settle wait time = 4549 ms, measure time = 102 ms (allowed 150 ms), total time = 4651 ms
17-03-18 01:37:44.930 -07 000000430 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 01:37:44.980 -07 000000430 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4703 ms
17-03-18 01:37:44.980 -07 000000430 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:37:44.980 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:37:44.980 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:37:44.980 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:37:44.980 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:37:44.980 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:37:44.980 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:37:44.980 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:37:44.980 -07 000000474 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 01:37:45.010 -07 000000474 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 01:37:45.010 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:37:45.010 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 01:37:45.010 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:37:45.020 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:37:45.020 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 01:37:45.030 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:37:45.070 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:37:45.370 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:37:45.370 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:37:45.370 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:37:45.380 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-18 01:37:45.410 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:37:45.410 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 01:37:45.410 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 01:37:45.500 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 01:37:45.500 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:45.500 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:37:45.500 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 01:37:45.560 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 3.970374,
17-03-18 01:37:45.610 -07 000000430 INF: Image SNR check: start
17-03-18 01:37:45.610 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:37:45.610 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:37:45.620 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:37:45.620 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:37:45.620 -07 000000430 INF: Image SNR check: pass  [peak (Max-Min)=176.12]
17-03-18 01:37:45.620 -07 000000430 INF: Autofocus start
17-03-18 01:37:45.620 -07 000000430 INF: MeasureProfile start
17-03-18 01:37:45.640 -07 000000430 INF: MeasureProfile done
17-03-18 01:37:45.640 -07 000000430 INF: X=48  Z correction [um]=0.2069503
17-03-18 01:37:45.640 -07 000000430 INF: Autofocus finished
17-03-18 01:37:45.820 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:37:45.820 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:37:45.820 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.139486776830008. ----------
17-03-18 01:37:45.830 -07 000000610 INF: Cycle	89	Tile	1	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:37:45.830 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29028, sync = True, waitForSettling = True)
17-03-18 01:37:45.830 -07 000000610 INF: Z Motor: Moving to -0.132882 mm, started at -0.139487 mm, distance = 6.61 um
17-03-18 01:37:45.830 -07 000000610 INF: FPGA: Xmit ZDACW 29028\n [Z Motor]
17-03-18 01:37:45.830 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:37:45.840 -07 000000610 INF: FPGA: 'ZDACW 29028' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:37:45.840 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:37:45.840 -07 000000561 INF: FPGA: Recv ZDACR 29028
17-03-18 01:37:45.850 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:45.850 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:37:46.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:46.000 -07 000000444 INF: FPGA: Recv ZSGSRD 29971
17-03-18 01:37:46.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:46.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:46.010 -07 000000618 INF: FPGA: Recv ZSGSRD 29972
17-03-18 01:37:46.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:46.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:46.020 -07 000000626 INF: FPGA: Recv ZSGSRD 29975
17-03-18 01:37:46.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:46.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:46.030 -07 000000618 INF: FPGA: Recv ZSGSRD 29975
17-03-18 01:37:46.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:46.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:46.040 -07 000000474 INF: FPGA: Recv ZSGSRD 29974
17-03-18 01:37:46.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:46.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:46.050 -07 000000479 INF: FPGA: Recv ZSGSRD 29971
17-03-18 01:37:46.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:46.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:46.060 -07 000000430 INF: FPGA: Recv ZSGSRD 29974
17-03-18 01:37:46.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:46.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:46.070 -07 000000618 INF: FPGA: Recv ZSGSRD 29978
17-03-18 01:37:46.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:46.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:46.080 -07 000000444 INF: FPGA: Recv ZSGSRD 29971
17-03-18 01:37:46.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:46.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:46.090 -07 000000561 INF: FPGA: Recv ZSGSRD 29973
17-03-18 01:37:46.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:46.100 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:46.100 -07 000000626 INF: FPGA: Recv ZPIEZORD 25378
17-03-18 01:37:46.110 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:46.110 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.429 V. Piezo Error = -10.1 V.
17-03-18 01:37:46.110 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.9 um, Read 10 ADC samples: Avg = 29973 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29974 (-132.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29971 (-132.1 uncal um), Max = 29978 (-132.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 01:37:46.110 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29973, posNoise = 5, negNoise = 2
17-03-18 01:37:46.110 -07 000000610 INF: Z Motor: After move to -0.132882, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:46.110 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 01:37:46.110 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:37:46.110 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:37:46.110 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:37:46.110 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:37:46.110 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:37:46.110 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:37:46.110 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:37:46.110 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:37:46.110 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:37:46.110 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 01:37:46.110 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:37:46.110 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:37:46.120 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:37:46.120 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:37:46.120 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:37:46.120 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:37:46.130 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 19 ms.
17-03-18 01:37:46.130 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:37:46.130 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:37:46.130 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:37:46.140 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:37:46.140 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-18 01:37:46.150 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 29205 150\n [Camera]
17-03-18 01:37:46.350 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 01:37:46.740 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:37:46.740 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:37:46.740 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:37:46.740 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:37:46.740 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-18 01:37:46.740 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:37:46.740 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:37:46.740 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:37:46.740 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:37:46.740 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1475218192, 0x0, 418435064) start.
17-03-18 01:37:46.930 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29205 776
17-03-18 01:37:47.080 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:37:47.130 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 01:37:47.130 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:37:47.130 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:47.130 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1475218192, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 01:37:47.130 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:37:47.130 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:47.140 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:37:47.140 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:37:47.140 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:37:47.140 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 01:37:47.270 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:37:47.270 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:37:47.270 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:37:47.270 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:37:47.270 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) start.
17-03-18 01:37:47.270 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:37:47.270 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:37:47.270 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:37:47.270 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:37:47.270 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) start.
17-03-18 01:37:47.280 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:37:47.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:37:47.460 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:37:47.460 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:37:47.460 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 29205 150' command took 2 ms to send, 1304 ms to get response, and 1314 ms overall
17-03-18 01:37:47.460 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:37:47.460 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.132876262536136. ------
17-03-18 01:37:47.470 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:37:47.470 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13915 mm
17-03-18 01:37:47.470 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:37:47.600 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:37:47.600 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 130 ms overall
17-03-18 01:37:47.600 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 30396, sync = True, waitForSettling = False)
17-03-18 01:37:47.600 -07 000000447 INF: Z Motor: Moving to -0.139144 mm, started at -0.132876 mm, distance = -6.27 um
17-03-18 01:37:47.600 -07 000000430 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:37:47.600 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 01:37:47.600 -07 000000618 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-18 01:37:47.610 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:47.610 -07 000000455 INF: FPGA: Recv YRDPOS 122698
17-03-18 01:37:47.620 -07 000000447 INF: FPGA: Xmit ZDACW 30396\n [Z Motor]
17-03-18 01:37:47.620 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:37:47.620 -07 000000618 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:47.620 -07 000000618 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:37:47.620 -07 000000618 INF: Y Motor: Moving 1330 steps2
17-03-18 01:37:47.620 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 01:37:47.630 -07 000000447 INF: FPGA: 'ZDACW 30396' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 01:37:47.630 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:37:47.630 -07 000000576 INF: FPGA: Recv ZDACR 30396
17-03-18 01:37:47.640 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:37:47.640 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:47.640 -07 000000447 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 01:37:47.670 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 01:37:47.670 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:37:47.670 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:47.670 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 01:37:47.670 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:37:47.670 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:47.680 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:37:47.680 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:37:47.680 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 01:37:47.680 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 01:37:47.800 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:37:47.800 -07 000000430 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:37:48.010 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 01:37:48.010 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:37:48.050 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:48.050 -07 000000625 INF: FPGA: Recv YRDPOS 124381
17-03-18 01:37:48.060 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:37:48.060 -07 000000618 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:48.060 -07 000000618 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 01:37:48.060 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.094 mm/sec
17-03-18 01:37:49.010 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:49.010 -07 000000561 INF: FPGA: Recv YRDPOS 124382
17-03-18 01:37:49.020 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:49.020 -07 000000618 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:49.040 -07 000000618 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:37:49.040 -07 000000618 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:37:49.040 -07 000000618 INF: Y Motor: Moved to 60.7334 after 1445 ms (table move)
17-03-18 01:37:49.050 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139144 mm (DAC = 30396)
17-03-18 01:37:49.050 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:49.050 -07 000000438 INF: FPGA: Recv ZSGSRD 30948
17-03-18 01:37:49.060 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:49.060 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:49.060 -07 000000585 INF: FPGA: Recv ZSGSRD 30945
17-03-18 01:37:49.070 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:49.070 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:49.070 -07 000000561 INF: FPGA: Recv ZSGSRD 30952
17-03-18 01:37:49.080 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:49.080 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:49.080 -07 000000569 INF: FPGA: Recv ZSGSRD 30952
17-03-18 01:37:49.090 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:49.090 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:49.090 -07 000000455 INF: FPGA: Recv ZSGSRD 30950
17-03-18 01:37:49.100 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:49.100 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:49.100 -07 000000585 INF: FPGA: Recv ZSGSRD 30952
17-03-18 01:37:49.110 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:49.110 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:49.110 -07 000000561 INF: FPGA: Recv ZSGSRD 30951
17-03-18 01:37:49.120 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:37:49.120 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:49.120 -07 000000561 INF: FPGA: Recv ZSGSRD 30944
17-03-18 01:37:49.130 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:49.130 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:49.130 -07 000000585 INF: FPGA: Recv ZSGSRD 30949
17-03-18 01:37:49.140 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:49.140 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:49.140 -07 000000455 INF: FPGA: Recv ZSGSRD 30954
17-03-18 01:37:49.150 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:49.150 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:49.150 -07 000000561 INF: FPGA: Recv ZPIEZORD 26679
17-03-18 01:37:49.160 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:49.160 -07 000000474 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.638 V. Piezo Error = -9.4 V.
17-03-18 01:37:49.160 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30950 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30950 (-138.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30944 (-138.3 uncal um), Max = 30954 (-138.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:37:49.160 -07 000000474 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30950, posNoise = 4, negNoise = 6
17-03-18 01:37:49.160 -07 000000474 INF: Z Motor: After move to -0.139144, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:49.160 -07 000000474 INF: Z Motor: Settle wait time = 1449 ms, measure time = 110 ms (allowed 150 ms), total time = 1559 ms
17-03-18 01:37:49.160 -07 000000474 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:37:49.200 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1729 ms
17-03-18 01:37:49.200 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:37:49.200 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:37:49.200 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:37:49.200 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:37:49.200 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:37:49.200 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:37:49.200 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:37:49.200 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:37:49.200 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:37:49.210 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:37:49.210 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:37:49.220 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:37:49.220 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 01:37:49.220 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:37:49.270 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:37:49.570 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:37:49.570 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:37:49.570 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:37:49.570 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 01:37:49.610 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:37:49.610 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 01:37:49.610 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 01:37:49.700 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:37:49.700 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:49.700 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:37:49.700 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 01:37:49.710 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:37:49.710 -07 000000474 INF: Autofocus start
17-03-18 01:37:49.710 -07 000000474 INF: MeasureProfile start
17-03-18 01:37:49.710 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:37:49.720 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:37:49.720 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:37:49.720 -07 000000474 INF: MeasureProfile done
17-03-18 01:37:49.720 -07 000000474 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:37:49.720 -07 000000474 INF: Autofocus finished
17-03-18 01:37:49.920 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:37:49.920 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:37:49.920 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.139152717798637. ----------
17-03-18 01:37:49.920 -07 000000610 INF: Cycle	89	Tile	2	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:37:49.930 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28904, sync = True, waitForSettling = True)
17-03-18 01:37:49.930 -07 000000610 INF: Z Motor: Moving to -0.132314 mm, started at -0.139153 mm, distance = 6.84 um
17-03-18 01:37:49.930 -07 000000610 INF: FPGA: Xmit ZDACW 28904\n [Z Motor]
17-03-18 01:37:49.930 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 01:37:49.940 -07 000000610 INF: FPGA: 'ZDACW 28904' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:49.940 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:37:49.940 -07 000000569 INF: FPGA: Recv ZDACR 28904
17-03-18 01:37:49.950 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:49.950 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:37:50.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:50.100 -07 000000585 INF: FPGA: Recv ZSGSRD 29889
17-03-18 01:37:50.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:50.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:50.110 -07 000000561 INF: FPGA: Recv ZSGSRD 29890
17-03-18 01:37:50.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:50.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:50.120 -07 000000561 INF: FPGA: Recv ZSGSRD 29885
17-03-18 01:37:50.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:50.130 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:50.130 -07 000000474 INF: FPGA: Recv ZSGSRD 29883
17-03-18 01:37:50.140 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:50.140 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:50.140 -07 000000569 INF: FPGA: Recv ZSGSRD 29887
17-03-18 01:37:50.150 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:50.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:50.150 -07 000000561 INF: FPGA: Recv ZSGSRD 29886
17-03-18 01:37:50.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:50.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:50.160 -07 000000561 INF: FPGA: Recv ZSGSRD 29894
17-03-18 01:37:50.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:50.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:50.170 -07 000000585 INF: FPGA: Recv ZSGSRD 29887
17-03-18 01:37:50.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:50.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:50.180 -07 000000569 INF: FPGA: Recv ZSGSRD 29886
17-03-18 01:37:50.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:50.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:50.190 -07 000000561 INF: FPGA: Recv ZSGSRD 29890
17-03-18 01:37:50.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:50.200 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:50.200 -07 000000561 INF: FPGA: Recv ZPIEZORD 25290
17-03-18 01:37:50.210 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:50.210 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.410 V. Piezo Error = -10.1 V.
17-03-18 01:37:50.210 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29888 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29887 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29883 (-131.5 uncal um), Max = 29894 (-131.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:37:50.210 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29888, posNoise = 6, negNoise = 5
17-03-18 01:37:50.210 -07 000000610 INF: Z Motor: After move to -0.132314, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:50.210 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:37:50.210 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:37:50.210 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:37:50.210 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:37:50.210 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:37:50.210 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:37:50.210 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:37:50.210 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:37:50.210 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:37:50.210 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:37:50.210 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:37:50.210 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:37:50.210 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:37:50.210 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:37:50.210 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:37:50.220 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:37:50.220 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:37:50.230 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:37:50.230 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:37:50.230 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:37:50.230 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:37:50.230 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 29080 150\n [Camera]
17-03-18 01:37:50.430 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:37:50.820 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:37:50.820 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:37:50.830 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:37:50.830 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:37:50.830 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:37:50.830 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:37:50.830 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:37:50.830 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:37:50.830 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:37:50.830 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) start.
17-03-18 01:37:50.920 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 4.014009,
17-03-18 01:37:51.020 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29080 776
17-03-18 01:37:51.170 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:37:51.220 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:37:51.220 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:37:51.220 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:51.230 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:37:51.230 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:37:51.230 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:37:51.230 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:37:51.230 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:51.230 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:37:51.240 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:37:51.360 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:37:51.360 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:37:51.360 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:37:51.360 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:37:51.360 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:37:51.360 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:37:51.360 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:37:51.360 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:37:51.360 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:37:51.360 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-18 01:37:51.550 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:37:51.550 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:37:51.550 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 29080 150' command took 2 ms to send, 1302 ms to get response, and 1314 ms overall
17-03-18 01:37:51.550 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.132996
17-03-18 01:37:51.550 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13300 mm
17-03-18 01:37:51.550 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:37:51.550 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 01:37:51.550 -07 000000585 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-18 01:37:51.550 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 29053, sync = True, waitForSettling = False)
17-03-18 01:37:51.550 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:51.550 -07 000000625 INF: Z Motor: Moving to -0.132996 mm, started at -0.132330 mm, distance = -0.67 um
17-03-18 01:37:51.560 -07 000000474 INF: FPGA: Recv YRDPOS 124382
17-03-18 01:37:51.560 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:37:51.560 -07 000000585 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:51.560 -07 000000585 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:37:51.560 -07 000000585 INF: Y Motor: Moving 1343 steps-20
17-03-18 01:37:51.560 -07 000000625 INF: FPGA: Xmit ZDACW 29053\n [Z Motor]
17-03-18 01:37:51.560 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:37:51.570 -07 000000625 INF: FPGA: 'ZDACW 29053' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:37:51.570 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:37:51.570 -07 000000618 INF: FPGA: Recv ZDACR 29053
17-03-18 01:37:51.580 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:37:51.580 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:51.580 -07 000000625 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-18 01:37:51.760 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 01:37:51.760 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 01:37:51.760 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:51.760 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 01:37:51.760 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:37:51.760 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:51.770 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:37:51.770 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:37:51.770 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 01:37:51.780 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 01:37:51.950 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 01:37:51.950 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:37:52.000 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:52.000 -07 000000455 INF: FPGA: Recv YRDPOS 126083
17-03-18 01:37:52.010 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:37:52.010 -07 000000585 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:52.010 -07 000000585 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 01:37:52.010 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-18 01:37:52.280 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:37:52.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:37:52.960 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:52.960 -07 000000618 INF: FPGA: Recv YRDPOS 126083
17-03-18 01:37:52.970 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:52.970 -07 000000585 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:52.990 -07 000000585 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:37:52.990 -07 000000585 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:37:52.990 -07 000000585 INF: Y Motor: Moved to 61.5640 after 1440 ms (table move)
17-03-18 01:37:52.990 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132996 mm (DAC = 29053)
17-03-18 01:37:53.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:53.000 -07 000000585 INF: FPGA: Recv ZSGSRD 29987
17-03-18 01:37:53.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:53.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:53.010 -07 000000585 INF: FPGA: Recv ZSGSRD 29990
17-03-18 01:37:53.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:53.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:53.020 -07 000000479 INF: FPGA: Recv ZSGSRD 29997
17-03-18 01:37:53.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:53.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:53.030 -07 000000479 INF: FPGA: Recv ZSGSRD 29997
17-03-18 01:37:53.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:53.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:53.040 -07 000000479 INF: FPGA: Recv ZSGSRD 29993
17-03-18 01:37:53.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:53.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:53.050 -07 000000479 INF: FPGA: Recv ZSGSRD 29993
17-03-18 01:37:53.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:53.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:53.060 -07 000000479 INF: FPGA: Recv ZSGSRD 29993
17-03-18 01:37:53.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:53.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:53.070 -07 000000438 INF: FPGA: Recv ZSGSRD 29987
17-03-18 01:37:53.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:53.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:53.080 -07 000000569 INF: FPGA: Recv ZSGSRD 29987
17-03-18 01:37:53.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:53.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:53.090 -07 000000625 INF: FPGA: Recv ZSGSRD 29990
17-03-18 01:37:53.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:53.100 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:53.100 -07 000000625 INF: FPGA: Recv ZPIEZORD 25490
17-03-18 01:37:53.110 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:53.110 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.433 V. Piezo Error = -9.9 V.
17-03-18 01:37:53.110 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 29991 (-132.2 uncal um), Error = 0.8 uncal um, Median = 29992 (-132.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29987 (-132.2 uncal um), Max = 29997 (-132.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:37:53.110 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29991, posNoise = 6, negNoise = 4
17-03-18 01:37:53.110 -07 000000610 INF: Z Motor: After move to -0.132996, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:53.110 -07 000000610 INF: Z Motor: Settle wait time = 1442 ms, measure time = 111 ms (allowed 150 ms), total time = 1553 ms
17-03-18 01:37:53.110 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:37:53.150 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-18 01:37:53.150 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:37:53.160 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.132991898354688. ----------
17-03-18 01:37:53.160 -07 000000610 INF: Cycle	89	Tile	3	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:37:53.160 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28876, sync = True, waitForSettling = True)
17-03-18 01:37:53.160 -07 000000610 INF: Z Motor: Moving to -0.132186 mm, started at -0.132992 mm, distance = 0.81 um
17-03-18 01:37:53.160 -07 000000610 INF: FPGA: Xmit ZDACW 28876\n [Z Motor]
17-03-18 01:37:53.160 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:37:53.170 -07 000000610 INF: FPGA: 'ZDACW 28876' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:37:53.170 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:37:53.170 -07 000000480 INF: FPGA: Recv ZDACR 28876
17-03-18 01:37:53.180 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:53.180 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:37:53.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:53.330 -07 000000576 INF: FPGA: Recv ZSGSRD 29867
17-03-18 01:37:53.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:53.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:53.340 -07 000000576 INF: FPGA: Recv ZSGSRD 29874
17-03-18 01:37:53.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:53.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:53.350 -07 000000576 INF: FPGA: Recv ZSGSRD 29857
17-03-18 01:37:53.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:53.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:53.360 -07 000000561 INF: FPGA: Recv ZSGSRD 29869
17-03-18 01:37:53.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:53.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:53.370 -07 000000480 INF: FPGA: Recv ZSGSRD 29866
17-03-18 01:37:53.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:53.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:53.380 -07 000000618 INF: FPGA: Recv ZSGSRD 29863
17-03-18 01:37:53.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:53.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:53.390 -07 000000576 INF: FPGA: Recv ZSGSRD 29872
17-03-18 01:37:53.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:53.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:53.400 -07 000000474 INF: FPGA: Recv ZSGSRD 29859
17-03-18 01:37:53.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:53.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:53.410 -07 000000480 INF: FPGA: Recv ZSGSRD 29869
17-03-18 01:37:53.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:53.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:53.420 -07 000000618 INF: FPGA: Recv ZSGSRD 29872
17-03-18 01:37:53.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:53.430 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:53.430 -07 000000576 INF: FPGA: Recv ZPIEZORD 25330
17-03-18 01:37:53.440 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:53.440 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.406 V. Piezo Error = -10.0 V.
17-03-18 01:37:53.440 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29867 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29868 (-131.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29857 (-131.3 uncal um), Max = 29874 (-131.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 01:37:53.440 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29867, posNoise = 7, negNoise = 10
17-03-18 01:37:53.440 -07 000000610 INF: Z Motor: After move to -0.132186, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:53.440 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 01:37:53.440 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:37:53.440 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:37:53.440 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:37:53.440 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:37:53.440 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:37:53.440 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:37:53.440 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:37:53.440 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:37:53.440 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:37:53.440 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:37:53.440 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:37:53.440 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:37:53.450 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:37:53.450 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:37:53.450 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:37:53.450 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:37:53.460 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:37:53.460 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:37:53.460 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:37:53.460 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:37:53.460 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 29053 150\n [Camera]
17-03-18 01:37:53.660 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:37:54.050 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:37:54.050 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:37:54.050 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:37:54.050 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:37:54.050 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 01:37:54.050 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:37:54.050 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:37:54.050 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:37:54.050 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:37:54.050 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 01:37:54.250 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29053 776
17-03-18 01:37:54.390 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:37:54.440 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 01:37:54.440 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 01:37:54.440 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:54.440 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 01:37:54.440 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 01:37:54.440 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:54.440 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:37:54.440 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 01:37:54.440 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:37:54.450 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:37:54.580 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:37:54.580 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:37:54.580 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:37:54.580 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:37:54.580 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 01:37:54.580 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:37:54.580 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:37:54.590 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:37:54.590 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:37:54.590 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 01:37:54.770 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:37:54.770 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:37:54.770 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 29053 150' command took 2 ms to send, 1308 ms to get response, and 1315 ms overall
17-03-18 01:37:54.780 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.132556
17-03-18 01:37:54.780 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13256 mm
17-03-18 01:37:54.780 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:37:54.780 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 01:37:54.780 -07 000000618 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-18 01:37:54.780 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 28957, sync = True, waitForSettling = False)
17-03-18 01:37:54.780 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:54.780 -07 000000561 INF: Z Motor: Moving to -0.132557 mm, started at -0.132195 mm, distance = -0.36 um
17-03-18 01:37:54.780 -07 000000474 INF: FPGA: Recv YRDPOS 126083
17-03-18 01:37:54.790 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:37:54.790 -07 000000561 INF: FPGA: Xmit ZDACW 28957\n [Z Motor]
17-03-18 01:37:54.790 -07 000000618 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:54.790 -07 000000618 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:37:54.790 -07 000000618 INF: Y Motor: Moving 1342 steps-18
17-03-18 01:37:54.790 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:37:54.800 -07 000000561 INF: FPGA: 'ZDACW 28957' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:37:54.800 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:37:54.800 -07 000000576 INF: FPGA: Recv ZDACR 28957
17-03-18 01:37:54.810 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:37:54.810 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:54.810 -07 000000561 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-18 01:37:54.990 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 01:37:54.990 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:37:54.990 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:54.990 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 01:37:54.990 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 01:37:54.990 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:54.990 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:37:54.990 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 01:37:54.990 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:37:55.000 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 01:37:55.180 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 01:37:55.180 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:37:55.230 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:55.230 -07 000000576 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:37:55.240 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:37:55.240 -07 000000618 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:55.240 -07 000000618 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 01:37:55.240 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.112 mm/sec
17-03-18 01:37:56.190 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:56.190 -07 000000625 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:37:56.200 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:56.200 -07 000000618 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:56.220 -07 000000618 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:37:56.220 -07 000000618 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:37:56.220 -07 000000618 INF: Y Motor: Moved to 62.3955 after 1440 ms (table move)
17-03-18 01:37:56.220 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132557 mm (DAC = 28957)
17-03-18 01:37:56.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:56.230 -07 000000625 INF: FPGA: Recv ZSGSRD 29924
17-03-18 01:37:56.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:37:56.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:56.230 -07 000000561 INF: FPGA: Recv ZSGSRD 29926
17-03-18 01:37:56.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:37:56.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:56.240 -07 000000625 INF: FPGA: Recv ZSGSRD 29932
17-03-18 01:37:56.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:56.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:56.250 -07 000000625 INF: FPGA: Recv ZSGSRD 29925
17-03-18 01:37:56.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:56.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:56.260 -07 000000576 INF: FPGA: Recv ZSGSRD 29929
17-03-18 01:37:56.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:56.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:56.280 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 3.979922,
17-03-18 01:37:56.280 -07 000000474 INF: FPGA: Recv ZSGSRD 29923
17-03-18 01:37:56.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:37:56.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:56.310 -07 000000480 INF: FPGA: Recv ZSGSRD 29921
17-03-18 01:37:56.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:37:56.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:56.330 -07 000000561 INF: FPGA: Recv ZSGSRD 29928
17-03-18 01:37:56.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:37:56.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:56.340 -07 000000480 INF: FPGA: Recv ZSGSRD 29926
17-03-18 01:37:56.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:56.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:56.360 -07 000000618 INF: FPGA: Recv ZSGSRD 29918
17-03-18 01:37:56.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:37:56.370 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:56.370 -07 000000430 INF: FPGA: Recv ZPIEZORD 25452
17-03-18 01:37:56.380 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:56.380 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.419 V. Piezo Error = -9.8 V.
17-03-18 01:37:56.380 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29925 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29926 (-131.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29918 (-131.7 uncal um), Max = 29932 (-131.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:37:56.380 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29925, posNoise = 7, negNoise = 7
17-03-18 01:37:56.380 -07 000000610 INF: Z Motor: After move to -0.132557, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:56.380 -07 000000610 INF: Z Motor: Settle wait time = 1442 ms, measure time = 152 ms (allowed 150 ms), total time = 1594 ms
17-03-18 01:37:56.380 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 152 ms, longer than max expected time of 150 ms
17-03-18 01:37:56.380 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-18 01:37:56.380 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:37:56.380 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.132567900353332. ----------
17-03-18 01:37:56.380 -07 000000610 INF: Cycle	89	Tile	4	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:37:56.380 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28780, sync = True, waitForSettling = True)
17-03-18 01:37:56.380 -07 000000610 INF: Z Motor: Moving to -0.131746 mm, started at -0.132568 mm, distance = 0.82 um
17-03-18 01:37:56.380 -07 000000610 INF: FPGA: Xmit ZDACW 28780\n [Z Motor]
17-03-18 01:37:56.380 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 01:37:56.390 -07 000000610 INF: FPGA: 'ZDACW 28780' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:37:56.390 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:37:56.390 -07 000000444 INF: FPGA: Recv ZDACR 28780
17-03-18 01:37:56.400 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:56.400 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:37:56.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:56.550 -07 000000629 INF: FPGA: Recv ZSGSRD 29798
17-03-18 01:37:56.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:56.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:56.560 -07 000000626 INF: FPGA: Recv ZSGSRD 29804
17-03-18 01:37:56.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:37:56.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:56.570 -07 000000625 INF: FPGA: Recv ZSGSRD 29809
17-03-18 01:37:56.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:56.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:56.580 -07 000000626 INF: FPGA: Recv ZSGSRD 29796
17-03-18 01:37:56.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:56.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:56.590 -07 000000626 INF: FPGA: Recv ZSGSRD 29797
17-03-18 01:37:56.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:56.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:56.600 -07 000000625 INF: FPGA: Recv ZSGSRD 29795
17-03-18 01:37:56.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:56.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:56.610 -07 000000626 INF: FPGA: Recv ZSGSRD 29794
17-03-18 01:37:56.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:56.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:56.620 -07 000000474 INF: FPGA: Recv ZSGSRD 29802
17-03-18 01:37:56.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:56.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:56.630 -07 000000626 INF: FPGA: Recv ZSGSRD 29797
17-03-18 01:37:56.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:56.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:56.640 -07 000000474 INF: FPGA: Recv ZSGSRD 29803
17-03-18 01:37:56.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:56.650 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:56.650 -07 000000625 INF: FPGA: Recv ZPIEZORD 25277
17-03-18 01:37:56.660 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:56.660 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.392 V. Piezo Error = -9.9 V.
17-03-18 01:37:56.660 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29800 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29798 (-131.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29794 (-130.9 uncal um), Max = 29809 (-131.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:37:56.660 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29800, posNoise = 9, negNoise = 6
17-03-18 01:37:56.660 -07 000000610 INF: Z Motor: After move to -0.131746, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:56.660 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 01:37:56.660 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:37:56.660 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:37:56.660 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:37:56.660 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:37:56.660 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:37:56.660 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:37:56.660 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:37:56.660 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:37:56.660 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:37:56.660 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:37:56.660 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:37:56.660 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:37:56.660 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:37:56.660 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:37:56.670 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:37:56.670 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:37:56.680 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:37:56.680 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 01:37:56.680 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:37:56.680 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 01:37:56.690 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28957 150\n [Camera]
17-03-18 01:37:56.880 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:37:57.280 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:37:57.280 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:37:57.280 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:37:57.280 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:37:57.280 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 01:37:57.280 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:37:57.280 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:37:57.280 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:37:57.400 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:37:57.400 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:37:57.410 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:37:57.410 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 01:37:57.470 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28957 776
17-03-18 01:37:57.620 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:37:57.670 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:37:57.670 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:37:57.670 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:57.680 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:37:57.680 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:37:57.800 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 01:37:57.800 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 01:37:57.800 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:57.810 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:37:57.810 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:37:57.810 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:37:57.810 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:37:57.810 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:37:57.810 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:37:57.810 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:37:57.820 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:37:57.820 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 01:37:57.820 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 537 ms.
17-03-18 01:37:57.820 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:37:57.820 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:37:58.000 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:37:58.000 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:37:58.000 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28957 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-18 01:37:58.000 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.132446
17-03-18 01:37:58.000 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13245 mm
17-03-18 01:37:58.000 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:37:58.000 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 01:37:58.000 -07 000000626 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 01:37:58.000 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:58.010 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 28933, sync = True, waitForSettling = False)
17-03-18 01:37:58.010 -07 000000444 INF: Z Motor: Moving to -0.132447 mm, started at -0.131765 mm, distance = -0.68 um
17-03-18 01:37:58.010 -07 000000576 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:37:58.010 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:37:58.010 -07 000000626 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:58.010 -07 000000626 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:37:58.010 -07 000000626 INF: Y Motor: Moving 1339 steps-15
17-03-18 01:37:58.010 -07 000000444 INF: FPGA: Xmit ZDACW 28933\n [Z Motor]
17-03-18 01:37:58.010 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:37:58.020 -07 000000444 INF: FPGA: 'ZDACW 28933' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:37:58.020 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:37:58.020 -07 000000585 INF: FPGA: Recv ZDACR 28933
17-03-18 01:37:58.030 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:58.030 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:37:58.030 -07 000000444 INF: Z Motor: MoveAbsStepped took 17 ms (did NOT wait for settling yet))
17-03-18 01:37:58.200 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 01:37:58.200 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 01:37:58.200 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:58.200 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 01:37:58.200 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 01:37:58.200 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:37:58.200 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:37:58.200 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:37:58.200 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:37:58.210 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:37:58.400 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 01:37:58.400 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 01:37:58.450 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:58.450 -07 000000629 INF: FPGA: Recv YRDPOS 129483
17-03-18 01:37:58.460 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:37:58.460 -07 000000626 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:58.460 -07 000000626 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 01:37:58.460 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.837 mm, average velocity = 2.119 mm/sec
17-03-18 01:37:59.410 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:37:59.410 -07 000000629 INF: FPGA: Recv YRDPOS 129483
17-03-18 01:37:59.420 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:59.420 -07 000000626 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:37:59.440 -07 000000626 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:37:59.440 -07 000000626 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:37:59.440 -07 000000626 INF: Y Motor: Moved to 63.2241 after 1437 ms (table move)
17-03-18 01:37:59.440 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132447 mm (DAC = 28933)
17-03-18 01:37:59.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:59.450 -07 000000626 INF: FPGA: Recv ZSGSRD 29902
17-03-18 01:37:59.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:59.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:59.460 -07 000000625 INF: FPGA: Recv ZSGSRD 29904
17-03-18 01:37:59.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:59.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:59.470 -07 000000501 INF: FPGA: Recv ZSGSRD 29910
17-03-18 01:37:59.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:59.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:59.480 -07 000000474 INF: FPGA: Recv ZSGSRD 29911
17-03-18 01:37:59.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:59.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:59.490 -07 000000629 INF: FPGA: Recv ZSGSRD 29911
17-03-18 01:37:59.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:59.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:59.500 -07 000000474 INF: FPGA: Recv ZSGSRD 29908
17-03-18 01:37:59.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:59.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:59.510 -07 000000629 INF: FPGA: Recv ZSGSRD 29907
17-03-18 01:37:59.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:59.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:59.520 -07 000000625 INF: FPGA: Recv ZSGSRD 29905
17-03-18 01:37:59.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:59.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:59.530 -07 000000501 INF: FPGA: Recv ZSGSRD 29901
17-03-18 01:37:59.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:59.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:59.540 -07 000000625 INF: FPGA: Recv ZSGSRD 29907
17-03-18 01:37:59.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:59.550 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:59.550 -07 000000629 INF: FPGA: Recv ZPIEZORD 25470
17-03-18 01:37:59.560 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:59.560 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.415 V. Piezo Error = -9.7 V.
17-03-18 01:37:59.560 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29907 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29907 (-131.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29901 (-131.6 uncal um), Max = 29911 (-131.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:37:59.560 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29907, posNoise = 4, negNoise = 6
17-03-18 01:37:59.560 -07 000000610 INF: Z Motor: After move to -0.132447, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:59.560 -07 000000610 INF: Z Motor: Settle wait time = 1438 ms, measure time = 110 ms (allowed 150 ms), total time = 1548 ms
17-03-18 01:37:59.560 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:37:59.600 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-18 01:37:59.600 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:37:59.600 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.13245226453478. ----------
17-03-18 01:37:59.600 -07 000000610 INF: Cycle	89	Tile	5	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:37:59.600 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28756, sync = True, waitForSettling = True)
17-03-18 01:37:59.600 -07 000000610 INF: Z Motor: Moving to -0.131637 mm, started at -0.132452 mm, distance = 0.82 um
17-03-18 01:37:59.600 -07 000000610 INF: FPGA: Xmit ZDACW 28756\n [Z Motor]
17-03-18 01:37:59.600 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 01:37:59.610 -07 000000610 INF: FPGA: 'ZDACW 28756' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:37:59.610 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:37:59.610 -07 000000626 INF: FPGA: Recv ZDACR 28756
17-03-18 01:37:59.620 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:59.620 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:37:59.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:59.770 -07 000000629 INF: FPGA: Recv ZSGSRD 29784
17-03-18 01:37:59.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:37:59.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:59.780 -07 000000480 INF: FPGA: Recv ZSGSRD 29781
17-03-18 01:37:59.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:59.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:59.790 -07 000000629 INF: FPGA: Recv ZSGSRD 29782
17-03-18 01:37:59.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:59.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:59.800 -07 000000480 INF: FPGA: Recv ZSGSRD 29780
17-03-18 01:37:59.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:59.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:59.810 -07 000000501 INF: FPGA: Recv ZSGSRD 29788
17-03-18 01:37:59.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:59.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:59.820 -07 000000480 INF: FPGA: Recv ZSGSRD 29782
17-03-18 01:37:59.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:59.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:59.830 -07 000000629 INF: FPGA: Recv ZSGSRD 29779
17-03-18 01:37:59.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:59.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:59.840 -07 000000626 INF: FPGA: Recv ZSGSRD 29781
17-03-18 01:37:59.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:59.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:59.850 -07 000000629 INF: FPGA: Recv ZSGSRD 29782
17-03-18 01:37:59.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:59.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:37:59.860 -07 000000626 INF: FPGA: Recv ZSGSRD 29781
17-03-18 01:37:59.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:59.870 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:37:59.870 -07 000000629 INF: FPGA: Recv ZPIEZORD 25284
17-03-18 01:37:59.880 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:37:59.880 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.388 V. Piezo Error = -9.9 V.
17-03-18 01:37:59.880 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29782 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29782 (-130.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29779 (-130.8 uncal um), Max = 29788 (-130.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:37:59.880 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29782, posNoise = 6, negNoise = 3
17-03-18 01:37:59.880 -07 000000610 INF: Z Motor: After move to -0.131637, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:37:59.880 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 01:37:59.880 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:37:59.880 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:37:59.880 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:37:59.880 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:37:59.880 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:37:59.880 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:37:59.880 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:37:59.880 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:37:59.880 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:37:59.880 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:37:59.880 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:37:59.880 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:37:59.880 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:37:59.880 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:37:59.890 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:37:59.890 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:37:59.900 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 01:37:59.900 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 01:37:59.900 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 01:37:59.900 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:37:59.900 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28933 150\n [Camera]
17-03-18 01:38:00.100 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:38:00.490 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:38:00.490 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:38:00.490 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:38:00.490 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:38:00.490 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) start.
17-03-18 01:38:00.500 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:38:00.500 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:38:00.500 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:38:00.630 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:38:00.630 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:38:00.690 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28933 776
17-03-18 01:38:00.830 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:38:00.880 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 01:38:00.880 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 01:38:00.880 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:00.880 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:38:00.880 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 01:38:01.000 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 01:38:01.000 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 01:38:01.000 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:01.000 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:38:01.010 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 512 ms.
17-03-18 01:38:01.020 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:38:01.020 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:38:01.020 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:38:01.020 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:38:01.020 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-18 01:38:01.030 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:38:01.030 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:38:01.030 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:38:01.030 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:38:01.030 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) start.
17-03-18 01:38:01.210 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:38:01.220 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:38:01.220 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28933 150' command took 2 ms to send, 1310 ms to get response, and 1313 ms overall
17-03-18 01:38:01.220 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:38:01.220 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.13164923801706. ------
17-03-18 01:38:01.220 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:38:01.220 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13809 mm
17-03-18 01:38:01.220 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:38:01.220 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:38:01.230 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:38:01.230 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:38:01.230 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 01:38:01.230 -07 000000447 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 01:38:01.230 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30165, sync = True, waitForSettling = False)
17-03-18 01:38:01.230 -07 000000618 INF: Z Motor: Moving to -0.138087 mm, started at -0.131649 mm, distance = -6.44 um
17-03-18 01:38:01.240 -07 000000618 INF: FPGA: Xmit ZDACW 30165\n [Z Motor]
17-03-18 01:38:01.240 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:38:01.250 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:01.250 -07 000000618 INF: FPGA: 'ZDACW 30165' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:38:01.250 -07 000000625 INF: FPGA: Recv YRDPOS 129483
17-03-18 01:38:01.260 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 01:38:01.260 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:38:01.260 -07 000000447 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:01.260 -07 000000447 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:38:01.260 -07 000000447 INF: Y Motor: Moving 1342 steps-17
17-03-18 01:38:01.260 -07 000000629 INF: FPGA: Recv ZDACR 30165
17-03-18 01:38:01.270 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:38:01.270 -07 000000618 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 01:38:01.270 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:38:01.410 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 01:38:01.410 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 01:38:01.410 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:01.410 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 01:38:01.410 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 01:38:01.410 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:01.410 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:38:01.410 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 01:38:01.420 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:38:01.420 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:38:01.430 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:38:01.430 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:38:01.640 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 01:38:01.640 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 01:38:01.680 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 3.978563,
17-03-18 01:38:01.700 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:01.700 -07 000000629 INF: FPGA: Recv YRDPOS 131189
17-03-18 01:38:01.710 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 01:38:01.710 -07 000000447 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:01.710 -07 000000447 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-18 01:38:01.710 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.167 mm/sec
17-03-18 01:38:02.280 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:38:02.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:38:02.660 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:02.660 -07 000000480 INF: FPGA: Recv YRDPOS 131189
17-03-18 01:38:02.670 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:38:02.670 -07 000000447 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:02.690 -07 000000447 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:38:02.690 -07 000000447 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:38:02.690 -07 000000447 INF: Y Motor: Moved to 64.0571 after 1462 ms (table move)
17-03-18 01:38:02.690 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138087 mm (DAC = 30165)
17-03-18 01:38:02.690 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:02.700 -07 000000561 INF: FPGA: Recv ZSGSRD 30778
17-03-18 01:38:02.700 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:38:02.700 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:02.700 -07 000000501 INF: FPGA: Recv ZSGSRD 30789
17-03-18 01:38:02.710 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:02.710 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:02.710 -07 000000480 INF: FPGA: Recv ZSGSRD 30791
17-03-18 01:38:02.720 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:02.720 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:02.720 -07 000000585 INF: FPGA: Recv ZSGSRD 30788
17-03-18 01:38:02.730 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:02.730 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:02.730 -07 000000618 INF: FPGA: Recv ZSGSRD 30780
17-03-18 01:38:02.740 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:02.740 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:02.740 -07 000000438 INF: FPGA: Recv ZSGSRD 30783
17-03-18 01:38:02.750 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:02.750 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:02.750 -07 000000455 INF: FPGA: Recv ZSGSRD 30784
17-03-18 01:38:02.760 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:02.760 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:02.760 -07 000000447 INF: FPGA: Recv ZSGSRD 30780
17-03-18 01:38:02.770 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:02.770 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:02.770 -07 000000625 INF: FPGA: Recv ZSGSRD 30791
17-03-18 01:38:02.780 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:02.780 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:02.780 -07 000000512 INF: FPGA: Recv ZSGSRD 30787
17-03-18 01:38:02.790 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:02.790 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:38:02.790 -07 000000629 INF: FPGA: Recv ZPIEZORD 26615
17-03-18 01:38:02.800 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:02.800 -07 000000474 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.603 V. Piezo Error = -9.2 V.
17-03-18 01:38:02.800 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.1 um, Read 10 ADC samples: Avg = 30785 (-137.3 uncal um), Error = 0.8 uncal um, Median = 30786 (-137.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30778 (-137.2 uncal um), Max = 30791 (-137.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:38:02.800 -07 000000474 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30785, posNoise = 6, negNoise = 7
17-03-18 01:38:02.800 -07 000000474 INF: Z Motor: After move to -0.138087, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:38:02.800 -07 000000474 INF: Z Motor: Settle wait time = 1465 ms, measure time = 104 ms (allowed 150 ms), total time = 1569 ms
17-03-18 01:38:02.800 -07 000000474 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 01:38:02.850 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 01:38:02.850 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:38:02.850 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:38:02.850 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:38:02.850 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:38:02.850 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:38:02.850 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:38:02.850 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:38:02.860 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:38:02.860 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:38:02.860 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:38:02.860 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:38:02.870 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:38:02.870 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:38:02.870 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:38:02.920 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:38:03.220 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:38:03.220 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:38:03.220 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:38:03.220 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 01:38:03.260 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:38:03.260 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 01:38:03.260 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 386 ms overall
17-03-18 01:38:03.350 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 01:38:03.350 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:03.350 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:38:03.350 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 01:38:03.360 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:38:03.360 -07 000000480 INF: Autofocus start
17-03-18 01:38:03.360 -07 000000480 INF: MeasureProfile start
17-03-18 01:38:03.360 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:38:03.370 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:38:03.370 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:38:03.370 -07 000000480 INF: MeasureProfile done
17-03-18 01:38:03.370 -07 000000480 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:38:03.370 -07 000000480 INF: Autofocus finished
17-03-18 01:38:03.570 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:38:03.570 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:38:03.570 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138092722795246. ----------
17-03-18 01:38:03.570 -07 000000610 INF: Cycle	89	Tile	6	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:38:03.580 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28689, sync = True, waitForSettling = True)
17-03-18 01:38:03.580 -07 000000610 INF: Z Motor: Moving to -0.131330 mm, started at -0.138093 mm, distance = 6.76 um
17-03-18 01:38:03.580 -07 000000610 INF: FPGA: Xmit ZDACW 28689\n [Z Motor]
17-03-18 01:38:03.580 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:38:03.590 -07 000000610 INF: FPGA: 'ZDACW 28689' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:03.590 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:38:03.590 -07 000000629 INF: FPGA: Recv ZDACR 28689
17-03-18 01:38:03.600 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:03.600 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:38:03.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:03.750 -07 000000626 INF: FPGA: Recv ZSGSRD 29733
17-03-18 01:38:03.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:03.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:03.760 -07 000000629 INF: FPGA: Recv ZSGSRD 29738
17-03-18 01:38:03.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:38:03.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:03.770 -07 000000625 INF: FPGA: Recv ZSGSRD 29729
17-03-18 01:38:03.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:03.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:03.780 -07 000000626 INF: FPGA: Recv ZSGSRD 29727
17-03-18 01:38:03.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:03.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:03.790 -07 000000561 INF: FPGA: Recv ZSGSRD 29733
17-03-18 01:38:03.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:03.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:03.800 -07 000000625 INF: FPGA: Recv ZSGSRD 29730
17-03-18 01:38:03.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:03.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:03.810 -07 000000480 INF: FPGA: Recv ZSGSRD 29741
17-03-18 01:38:03.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:03.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:03.820 -07 000000625 INF: FPGA: Recv ZSGSRD 29733
17-03-18 01:38:03.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:03.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:03.830 -07 000000629 INF: FPGA: Recv ZSGSRD 29732
17-03-18 01:38:03.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:03.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:03.840 -07 000000626 INF: FPGA: Recv ZSGSRD 29735
17-03-18 01:38:03.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:03.850 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:38:03.850 -07 000000629 INF: FPGA: Recv ZPIEZORD 25223
17-03-18 01:38:03.860 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:03.860 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.378 V. Piezo Error = -9.9 V.
17-03-18 01:38:03.860 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29733 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29733 (-130.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29727 (-130.5 uncal um), Max = 29741 (-130.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:38:03.860 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29733, posNoise = 8, negNoise = 6
17-03-18 01:38:03.860 -07 000000610 INF: Z Motor: After move to -0.131330, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:38:03.860 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:38:03.860 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:38:03.860 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:38:03.860 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:38:03.860 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:38:03.860 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:38:03.860 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:38:03.860 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:38:03.860 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:38:03.860 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:38:03.860 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:38:03.860 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:38:03.860 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:38:03.870 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:38:03.870 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:38:03.870 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:38:03.870 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:38:03.880 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:38:03.880 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:38:03.880 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 01:38:03.880 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:38:03.890 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28866 150\n [Camera]
17-03-18 01:38:04.090 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:38:04.480 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:38:04.480 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:38:04.480 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:38:04.480 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:38:04.480 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 01:38:04.480 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:38:04.480 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:38:04.480 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:38:04.480 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:38:04.480 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 01:38:04.670 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28866 776
17-03-18 01:38:04.820 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:38:04.850 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 01:38:04.850 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 01:38:04.860 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:04.860 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 01:38:04.860 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 01:38:04.860 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:04.860 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:38:04.860 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:38:04.860 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 01:38:04.870 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 01:38:05.010 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:38:05.010 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:38:05.010 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:38:05.010 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:38:05.010 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:38:05.010 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:38:05.010 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:38:05.010 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:38:05.010 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:38:05.010 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:38:05.200 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:38:05.200 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:38:05.200 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28866 150' command took 2 ms to send, 1305 ms to get response, and 1314 ms overall
17-03-18 01:38:05.200 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.131957
17-03-18 01:38:05.200 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13196 mm
17-03-18 01:38:05.200 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:38:05.200 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 01:38:05.200 -07 000000447 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 01:38:05.200 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:05.200 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 28826, sync = True, waitForSettling = False)
17-03-18 01:38:05.200 -07 000000561 INF: Z Motor: Moving to -0.131957 mm, started at -0.131334 mm, distance = -0.62 um
17-03-18 01:38:05.210 -07 000000561 INF: FPGA: Xmit ZDACW 28826\n [Z Motor]
17-03-18 01:38:05.210 -07 000000474 INF: FPGA: Recv YRDPOS 131189
17-03-18 01:38:05.210 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:38:05.210 -07 000000447 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:05.210 -07 000000447 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:38:05.210 -07 000000447 INF: Y Motor: Moving 1337 steps-11
17-03-18 01:38:05.210 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 01:38:05.220 -07 000000561 INF: FPGA: 'ZDACW 28826' command took 2 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:38:05.220 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:38:05.230 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:38:05.230 -07 000000626 INF: FPGA: Recv ZDACR 28826
17-03-18 01:38:05.240 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:38:05.240 -07 000000561 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-18 01:38:05.410 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 01:38:05.410 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:38:05.410 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:05.420 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:38:05.420 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:38:05.420 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:05.420 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:38:05.420 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 01:38:05.420 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:38:05.430 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 01:38:05.590 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 01:38:05.590 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 01:38:05.640 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:05.640 -07 000000480 INF: FPGA: Recv YRDPOS 132872
17-03-18 01:38:05.650 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:38:05.650 -07 000000447 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:05.650 -07 000000447 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:38:05.650 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.835 mm, average velocity = 2.170 mm/sec
17-03-18 01:38:06.600 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:06.600 -07 000000561 INF: FPGA: Recv YRDPOS 132872
17-03-18 01:38:06.610 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:38:06.610 -07 000000447 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:06.630 -07 000000447 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:38:06.630 -07 000000447 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:38:06.630 -07 000000447 INF: Y Motor: Moved to 64.8789 after 1428 ms (table move)
17-03-18 01:38:06.630 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131957 mm (DAC = 28826)
17-03-18 01:38:06.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:06.640 -07 000000626 INF: FPGA: Recv ZSGSRD 29828
17-03-18 01:38:06.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:38:06.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:06.650 -07 000000447 INF: FPGA: Recv ZSGSRD 29829
17-03-18 01:38:06.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:06.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:06.660 -07 000000629 INF: FPGA: Recv ZSGSRD 29831
17-03-18 01:38:06.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:06.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:06.670 -07 000000474 INF: FPGA: Recv ZSGSRD 29832
17-03-18 01:38:06.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:06.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:06.680 -07 000000480 INF: FPGA: Recv ZSGSRD 29836
17-03-18 01:38:06.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:06.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:06.690 -07 000000625 INF: FPGA: Recv ZSGSRD 29834
17-03-18 01:38:06.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:06.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:06.700 -07 000000629 INF: FPGA: Recv ZSGSRD 29830
17-03-18 01:38:06.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:06.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:06.710 -07 000000474 INF: FPGA: Recv ZSGSRD 29828
17-03-18 01:38:06.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:06.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:06.720 -07 000000626 INF: FPGA: Recv ZSGSRD 29829
17-03-18 01:38:06.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:06.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:06.740 -07 000000474 INF: FPGA: Recv ZSGSRD 29835
17-03-18 01:38:06.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:38:06.750 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:38:06.750 -07 000000626 INF: FPGA: Recv ZPIEZORD 25366
17-03-18 01:38:06.760 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:06.760 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.399 V. Piezo Error = -9.8 V.
17-03-18 01:38:06.760 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29831 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29830 (-131.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29828 (-131.2 uncal um), Max = 29836 (-131.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:38:06.760 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29831, posNoise = 5, negNoise = 3
17-03-18 01:38:06.760 -07 000000610 INF: Z Motor: After move to -0.131957, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:38:06.760 -07 000000610 INF: Z Motor: Settle wait time = 1430 ms, measure time = 121 ms (allowed 150 ms), total time = 1551 ms
17-03-18 01:38:06.760 -07 000000610 INF: Z Motor: Waiting extra 29 ms after reading position to reach expected total of 150 ms
17-03-18 01:38:06.790 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms
17-03-18 01:38:06.790 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:38:06.790 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.131964024412006. ----------
17-03-18 01:38:06.790 -07 000000610 INF: Cycle	89	Tile	7	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:38:06.790 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28649, sync = True, waitForSettling = True)
17-03-18 01:38:06.790 -07 000000610 INF: Z Motor: Moving to -0.131147 mm, started at -0.131964 mm, distance = 0.82 um
17-03-18 01:38:06.790 -07 000000610 INF: FPGA: Xmit ZDACW 28649\n [Z Motor]
17-03-18 01:38:06.790 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 01:38:06.800 -07 000000610 INF: FPGA: 'ZDACW 28649' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:38:06.800 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:38:06.800 -07 000000626 INF: FPGA: Recv ZDACR 28649
17-03-18 01:38:06.810 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:06.810 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:38:06.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:06.960 -07 000000474 INF: FPGA: Recv ZSGSRD 29705
17-03-18 01:38:06.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:06.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:06.970 -07 000000447 INF: FPGA: Recv ZSGSRD 29707
17-03-18 01:38:06.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:06.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:06.980 -07 000000629 INF: FPGA: Recv ZSGSRD 29707
17-03-18 01:38:06.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:06.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:06.990 -07 000000444 INF: FPGA: Recv ZSGSRD 29708
17-03-18 01:38:07.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:07.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:07.000 -07 000000474 INF: FPGA: Recv ZSGSRD 29708
17-03-18 01:38:07.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:07.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:07.010 -07 000000447 INF: FPGA: Recv ZSGSRD 29707
17-03-18 01:38:07.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:07.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:07.020 -07 000000629 INF: FPGA: Recv ZSGSRD 29705
17-03-18 01:38:07.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:07.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:07.030 -07 000000626 INF: FPGA: Recv ZSGSRD 29703
17-03-18 01:38:07.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:07.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:07.050 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 3.98264,
17-03-18 01:38:07.050 -07 000000626 INF: FPGA: Recv ZSGSRD 29689
17-03-18 01:38:07.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:38:07.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:07.070 -07 000000447 INF: FPGA: Recv ZSGSRD 29707
17-03-18 01:38:07.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:38:07.080 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:38:07.080 -07 000000626 INF: FPGA: Recv ZPIEZORD 25205
17-03-18 01:38:07.090 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:07.090 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.372 V. Piezo Error = -9.9 V.
17-03-18 01:38:07.090 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29705 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29707 (-130.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 29689 (-130.3 uncal um), Max = 29708 (-130.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 16 (0.1 uncal um)
17-03-18 01:38:07.090 -07 000000610 INF: Z Motor: ADC noise = 16, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29705, posNoise = 3, negNoise = 16
17-03-18 01:38:07.090 -07 000000610 INF: Z Motor: After move to -0.131147, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:38:07.090 -07 000000610 INF: Z Motor: MoveAbsStepped took 294 ms)
17-03-18 01:38:07.090 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:38:07.090 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:38:07.090 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:38:07.090 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:38:07.090 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:38:07.090 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:38:07.090 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:38:07.090 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:38:07.090 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:38:07.090 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:38:07.100 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:38:07.100 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:38:07.100 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:38:07.100 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:38:07.100 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:38:07.100 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:38:07.110 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:38:07.110 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-18 01:38:07.110 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:38:07.110 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-18 01:38:07.120 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28826 150\n [Camera]
17-03-18 01:38:07.280 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:38:07.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:38:07.320 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:38:07.710 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:38:07.710 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:38:07.710 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:38:07.710 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:38:07.710 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 01:38:07.710 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:38:07.710 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:38:07.710 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:38:07.710 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:38:07.710 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 01:38:07.900 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28826 776
17-03-18 01:38:08.050 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 01:38:08.080 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 01:38:08.090 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 01:38:08.090 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:08.090 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 01:38:08.090 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 01:38:08.090 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:08.090 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:38:08.090 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 01:38:08.090 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:38:08.100 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 01:38:08.240 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:38:08.240 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:38:08.240 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:38:08.240 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:38:08.240 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:38:08.240 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:38:08.240 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:38:08.240 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:38:08.240 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:38:08.240 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:38:08.430 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:38:08.430 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:38:08.430 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28826 150' command took 2 ms to send, 1304 ms to get response, and 1313 ms overall
17-03-18 01:38:08.430 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.131750
17-03-18 01:38:08.430 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13175 mm
17-03-18 01:38:08.430 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:38:08.430 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 01:38:08.430 -07 000000447 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 01:38:08.430 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:08.430 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 28781, sync = True, waitForSettling = False)
17-03-18 01:38:08.430 -07 000000444 INF: Z Motor: Moving to -0.131751 mm, started at -0.131155 mm, distance = -0.60 um
17-03-18 01:38:08.440 -07 000000444 INF: FPGA: Xmit ZDACW 28781\n [Z Motor]
17-03-18 01:38:08.440 -07 000000438 INF: FPGA: Recv YRDPOS 132872
17-03-18 01:38:08.440 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 01:38:08.440 -07 000000447 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:08.440 -07 000000447 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:38:08.440 -07 000000447 INF: Y Motor: Moving 1350 steps-28
17-03-18 01:38:08.440 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:38:08.450 -07 000000444 INF: FPGA: 'ZDACW 28781' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:38:08.450 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:38:08.450 -07 000000438 INF: FPGA: Recv ZDACR 28781
17-03-18 01:38:08.460 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:38:08.460 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:08.460 -07 000000444 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 01:38:08.620 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 01:38:08.620 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 01:38:08.620 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:08.620 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 01:38:08.620 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 01:38:08.630 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:08.630 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:38:08.630 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:38:08.630 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 01:38:08.640 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:38:08.830 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 01:38:08.830 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 01:38:08.880 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:08.880 -07 000000585 INF: FPGA: Recv YRDPOS 134582
17-03-18 01:38:08.890 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:08.890 -07 000000447 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:08.890 -07 000000447 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 01:38:08.890 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.844 mm, average velocity = 2.136 mm/sec
17-03-18 01:38:09.840 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:09.840 -07 000000444 INF: FPGA: Recv YRDPOS 134583
17-03-18 01:38:09.850 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:38:09.850 -07 000000447 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:09.870 -07 000000447 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:38:09.870 -07 000000447 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:38:09.870 -07 000000447 INF: Y Motor: Moved to 65.7144 after 1440 ms (table move)
17-03-18 01:38:09.880 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131751 mm (DAC = 28781)
17-03-18 01:38:09.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:09.880 -07 000000444 INF: FPGA: Recv ZSGSRD 29792
17-03-18 01:38:09.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:38:09.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:09.890 -07 000000444 INF: FPGA: Recv ZSGSRD 29799
17-03-18 01:38:09.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:09.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:09.900 -07 000000438 INF: FPGA: Recv ZSGSRD 29803
17-03-18 01:38:09.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:09.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:09.910 -07 000000444 INF: FPGA: Recv ZSGSRD 29798
17-03-18 01:38:09.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:09.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:09.920 -07 000000438 INF: FPGA: Recv ZSGSRD 29800
17-03-18 01:38:09.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:09.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:09.930 -07 000000444 INF: FPGA: Recv ZSGSRD 29795
17-03-18 01:38:09.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:09.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:09.940 -07 000000438 INF: FPGA: Recv ZSGSRD 29801
17-03-18 01:38:09.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:09.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:09.950 -07 000000480 INF: FPGA: Recv ZSGSRD 29799
17-03-18 01:38:09.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:09.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:09.960 -07 000000438 INF: FPGA: Recv ZSGSRD 29796
17-03-18 01:38:09.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:09.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:09.970 -07 000000444 INF: FPGA: Recv ZSGSRD 29798
17-03-18 01:38:09.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:09.980 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:38:09.980 -07 000000480 INF: FPGA: Recv ZPIEZORD 25355
17-03-18 01:38:09.990 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:09.990 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.392 V. Piezo Error = -9.8 V.
17-03-18 01:38:09.990 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29798 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29798 (-131.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29792 (-130.9 uncal um), Max = 29803 (-131.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:38:09.990 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29798, posNoise = 5, negNoise = 6
17-03-18 01:38:09.990 -07 000000610 INF: Z Motor: After move to -0.131751, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:38:09.990 -07 000000610 INF: Z Motor: Settle wait time = 1441 ms, measure time = 109 ms (allowed 150 ms), total time = 1550 ms
17-03-18 01:38:09.990 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:38:10.040 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-18 01:38:10.040 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:38:10.040 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.131752025411328. ----------
17-03-18 01:38:10.040 -07 000000610 INF: Cycle	89	Tile	8	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:38:10.040 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28604, sync = True, waitForSettling = True)
17-03-18 01:38:10.040 -07 000000610 INF: Z Motor: Moving to -0.130941 mm, started at -0.131752 mm, distance = 0.81 um
17-03-18 01:38:10.040 -07 000000610 INF: FPGA: Xmit ZDACW 28604\n [Z Motor]
17-03-18 01:38:10.040 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:38:10.050 -07 000000610 INF: FPGA: 'ZDACW 28604' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:38:10.050 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:38:10.050 -07 000000444 INF: FPGA: Recv ZDACR 28604
17-03-18 01:38:10.060 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:10.060 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:38:10.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:10.210 -07 000000625 INF: FPGA: Recv ZSGSRD 29666
17-03-18 01:38:10.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:38:10.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:10.220 -07 000000438 INF: FPGA: Recv ZSGSRD 29681
17-03-18 01:38:10.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:10.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:10.230 -07 000000447 INF: FPGA: Recv ZSGSRD 29676
17-03-18 01:38:10.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:10.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:10.240 -07 000000438 INF: FPGA: Recv ZSGSRD 29670
17-03-18 01:38:10.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:10.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:10.250 -07 000000625 INF: FPGA: Recv ZSGSRD 29666
17-03-18 01:38:10.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:10.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:10.260 -07 000000438 INF: FPGA: Recv ZSGSRD 29666
17-03-18 01:38:10.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:10.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:10.270 -07 000000444 INF: FPGA: Recv ZSGSRD 29679
17-03-18 01:38:10.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:10.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:10.280 -07 000000480 INF: FPGA: Recv ZSGSRD 29673
17-03-18 01:38:10.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:10.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:10.290 -07 000000444 INF: FPGA: Recv ZSGSRD 29669
17-03-18 01:38:10.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:10.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:10.300 -07 000000480 INF: FPGA: Recv ZSGSRD 29679
17-03-18 01:38:10.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:10.310 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:38:10.310 -07 000000438 INF: FPGA: Recv ZPIEZORD 25167
17-03-18 01:38:10.320 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:10.320 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.365 V. Piezo Error = -9.9 V.
17-03-18 01:38:10.320 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29672 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29672 (-130.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29666 (-130.1 uncal um), Max = 29681 (-130.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:38:10.320 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29672, posNoise = 9, negNoise = 6
17-03-18 01:38:10.320 -07 000000610 INF: Z Motor: After move to -0.130941, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:38:10.320 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 01:38:10.320 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:38:10.320 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:38:10.320 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:38:10.320 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:38:10.320 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:38:10.320 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:38:10.320 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:38:10.320 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:38:10.320 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:38:10.320 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:38:10.320 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:38:10.320 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:38:10.330 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:38:10.330 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:38:10.330 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:38:10.330 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:38:10.340 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:38:10.340 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:38:10.340 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:38:10.340 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:38:10.350 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28781 150\n [Camera]
17-03-18 01:38:10.550 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:38:10.940 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:38:10.940 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:38:10.940 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:38:10.940 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:38:10.940 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) start.
17-03-18 01:38:10.940 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:38:10.940 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:38:10.940 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:38:10.940 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:38:10.940 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 01:38:11.130 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28781 776
17-03-18 01:38:11.280 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:38:11.320 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 01:38:11.320 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 01:38:11.320 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:11.320 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 01:38:11.320 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 01:38:11.320 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:11.330 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:38:11.330 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 01:38:11.330 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:38:11.330 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:38:11.470 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 01:38:11.470 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 01:38:11.470 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:38:11.590 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 01:38:11.590 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 01:38:11.590 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:38:11.590 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:38:11.590 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:38:11.590 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:38:11.590 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:38:11.660 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:38:11.660 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:38:11.660 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28781 150' command took 2 ms to send, 1305 ms to get response, and 1313 ms overall
17-03-18 01:38:11.660 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.131323
17-03-18 01:38:11.660 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13132 mm
17-03-18 01:38:11.660 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:38:11.670 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 01:38:11.670 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 28687, sync = True, waitForSettling = False)
17-03-18 01:38:11.670 -07 000000569 INF: Z Motor: Moving to -0.131321 mm, started at -0.130943 mm, distance = -0.38 um
17-03-18 01:38:11.670 -07 000000569 INF: FPGA: Xmit ZDACW 28687\n [Z Motor]
17-03-18 01:38:11.670 -07 000000444 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-18 01:38:11.670 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 01:38:11.680 -07 000000569 INF: FPGA: 'ZDACW 28687' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:11.680 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:38:11.680 -07 000000625 INF: FPGA: Recv ZDACR 28687
17-03-18 01:38:11.690 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:11.690 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:11.690 -07 000000569 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-18 01:38:11.690 -07 000000501 INF: FPGA: Recv YRDPOS 134583
17-03-18 01:38:11.700 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 01:38:11.700 -07 000000444 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:11.700 -07 000000444 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:38:11.700 -07 000000444 INF: Y Motor: Moving 1341 steps-18
17-03-18 01:38:11.700 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:38:11.970 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 01:38:11.970 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 01:38:11.970 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:11.970 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 01:38:11.970 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 01:38:11.970 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:11.970 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:38:11.970 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 496 ms.
17-03-18 01:38:11.970 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:38:11.980 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 01:38:12.070 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 01:38:12.070 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-18 01:38:12.130 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:12.130 -07 000000625 INF: FPGA: Recv YRDPOS 136272
17-03-18 01:38:12.140 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 01:38:12.140 -07 000000444 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:12.140 -07 000000444 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:38:12.140 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.838 mm, average velocity = 2.218 mm/sec
17-03-18 01:38:12.280 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:38:12.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:38:12.440 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 3.988112,
17-03-18 01:38:13.090 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:13.090 -07 000000569 INF: FPGA: Recv YRDPOS 136272
17-03-18 01:38:13.100 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:38:13.100 -07 000000444 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:13.120 -07 000000444 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:38:13.120 -07 000000444 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:38:13.120 -07 000000444 INF: Y Motor: Moved to 66.5391 after 1457 ms (table move)
17-03-18 01:38:13.130 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131321 mm (DAC = 28687)
17-03-18 01:38:13.130 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:13.130 -07 000000438 INF: FPGA: Recv ZSGSRD 29737
17-03-18 01:38:13.140 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:13.140 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:13.140 -07 000000438 INF: FPGA: Recv ZSGSRD 29736
17-03-18 01:38:13.150 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:13.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:13.150 -07 000000447 INF: FPGA: Recv ZSGSRD 29719
17-03-18 01:38:13.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:13.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:13.160 -07 000000569 INF: FPGA: Recv ZSGSRD 29731
17-03-18 01:38:13.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:13.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:13.170 -07 000000501 INF: FPGA: Recv ZSGSRD 29737
17-03-18 01:38:13.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:13.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:13.180 -07 000000455 INF: FPGA: Recv ZSGSRD 29729
17-03-18 01:38:13.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:13.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:13.190 -07 000000455 INF: FPGA: Recv ZSGSRD 29727
17-03-18 01:38:13.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:13.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:13.200 -07 000000455 INF: FPGA: Recv ZSGSRD 29736
17-03-18 01:38:13.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:13.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:13.210 -07 000000455 INF: FPGA: Recv ZSGSRD 29738
17-03-18 01:38:13.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:13.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:13.220 -07 000000455 INF: FPGA: Recv ZSGSRD 29734
17-03-18 01:38:13.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:13.230 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:38:13.230 -07 000000455 INF: FPGA: Recv ZPIEZORD 25263
17-03-18 01:38:13.240 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:13.240 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.377 V. Piezo Error = -9.8 V.
17-03-18 01:38:13.240 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29732 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29735 (-130.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 29719 (-130.5 uncal um), Max = 29738 (-130.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-18 01:38:13.240 -07 000000610 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29732, posNoise = 6, negNoise = 13
17-03-18 01:38:13.240 -07 000000610 INF: Z Motor: After move to -0.131321, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:38:13.240 -07 000000610 INF: Z Motor: Settle wait time = 1460 ms, measure time = 110 ms (allowed 150 ms), total time = 1570 ms
17-03-18 01:38:13.240 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:38:13.280 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 01:38:13.280 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:38:13.280 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.131328027409972. ----------
17-03-18 01:38:13.280 -07 000000610 INF: Cycle	89	Tile	9	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:38:13.280 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28511, sync = True, waitForSettling = True)
17-03-18 01:38:13.280 -07 000000610 INF: Z Motor: Moving to -0.130515 mm, started at -0.131328 mm, distance = 0.81 um
17-03-18 01:38:13.280 -07 000000610 INF: FPGA: Xmit ZDACW 28511\n [Z Motor]
17-03-18 01:38:13.280 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 01:38:13.290 -07 000000610 INF: FPGA: 'ZDACW 28511' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:38:13.290 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:38:13.290 -07 000000625 INF: FPGA: Recv ZDACR 28511
17-03-18 01:38:13.300 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:13.300 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:38:13.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:13.450 -07 000000625 INF: FPGA: Recv ZSGSRD 29610
17-03-18 01:38:13.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:13.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:13.460 -07 000000480 INF: FPGA: Recv ZSGSRD 29618
17-03-18 01:38:13.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:38:13.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:13.470 -07 000000480 INF: FPGA: Recv ZSGSRD 29604
17-03-18 01:38:13.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:13.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:13.480 -07 000000480 INF: FPGA: Recv ZSGSRD 29601
17-03-18 01:38:13.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:13.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:13.490 -07 000000625 INF: FPGA: Recv ZSGSRD 29598
17-03-18 01:38:13.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:38:13.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:13.500 -07 000000447 INF: FPGA: Recv ZSGSRD 29609
17-03-18 01:38:13.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:13.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:13.510 -07 000000585 INF: FPGA: Recv ZSGSRD 29611
17-03-18 01:38:13.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:13.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:13.520 -07 000000625 INF: FPGA: Recv ZSGSRD 29601
17-03-18 01:38:13.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:13.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:13.530 -07 000000480 INF: FPGA: Recv ZSGSRD 29613
17-03-18 01:38:13.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:13.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:13.540 -07 000000625 INF: FPGA: Recv ZSGSRD 29609
17-03-18 01:38:13.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:13.550 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:38:13.550 -07 000000480 INF: FPGA: Recv ZPIEZORD 25062
17-03-18 01:38:13.560 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:13.560 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.351 V. Piezo Error = -10.0 V.
17-03-18 01:38:13.560 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29607 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29609 (-129.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 29598 (-129.7 uncal um), Max = 29618 (-129.8 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:38:13.560 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29607, posNoise = 11, negNoise = 9
17-03-18 01:38:13.560 -07 000000610 INF: Z Motor: After move to -0.130515, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:38:13.560 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 01:38:13.560 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:38:13.560 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:38:13.560 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:38:13.560 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:38:13.560 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:38:13.560 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:38:13.560 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:38:13.560 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:38:13.560 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:38:13.560 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:38:13.560 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:38:13.560 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:38:13.560 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:38:13.560 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:38:13.570 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:38:13.570 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:38:13.580 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 01:38:13.580 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 01:38:13.580 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 01:38:13.580 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 01:38:13.580 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28687 150\n [Camera]
17-03-18 01:38:13.780 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:38:14.170 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:38:14.170 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:38:14.170 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:38:14.170 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:38:14.170 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) start.
17-03-18 01:38:14.170 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:38:14.180 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:38:14.180 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:38:14.180 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:38:14.180 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 01:38:14.360 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28687 776
17-03-18 01:38:14.510 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:38:14.570 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:38:14.570 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:38:14.570 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:14.580 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:38:14.580 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:38:14.580 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:38:14.580 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:38:14.580 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:14.580 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:38:14.590 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:38:14.700 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:38:14.700 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:38:14.700 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:38:14.700 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:38:14.700 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) start.
17-03-18 01:38:14.710 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:38:14.710 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:38:14.710 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:38:14.710 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:38:14.710 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-18 01:38:14.890 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:38:14.890 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:38:14.890 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28687 150' command took 4 ms to send, 1299 ms to get response, and 1313 ms overall
17-03-18 01:38:14.900 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:38:14.900 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.130525000892252. ------
17-03-18 01:38:14.900 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:38:14.900 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13741 mm
17-03-18 01:38:14.900 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:38:14.900 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:38:14.900 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30018, sync = True, waitForSettling = False)
17-03-18 01:38:14.900 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 01:38:14.910 -07 000000479 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 01:38:14.910 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:14.910 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:38:14.910 -07 000000480 INF: Z Motor: Moving to -0.137414 mm, started at -0.130525 mm, distance = -6.89 um
17-03-18 01:38:14.910 -07 000000625 INF: FPGA: Recv YRDPOS 136272
17-03-18 01:38:14.920 -07 000000480 INF: FPGA: Xmit ZDACW 30018\n [Z Motor]
17-03-18 01:38:14.920 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:14.920 -07 000000479 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:14.920 -07 000000479 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:38:14.920 -07 000000479 INF: Y Motor: Moving 1350 steps-28
17-03-18 01:38:14.920 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 01:38:14.930 -07 000000430 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:38:14.930 -07 000000480 INF: FPGA: 'ZDACW 30018' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:38:14.940 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:38:14.950 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:38:14.950 -07 000000629 INF: FPGA: Recv ZDACR 30018
17-03-18 01:38:14.960 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:38:14.960 -07 000000480 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 01:38:15.080 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 01:38:15.080 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 01:38:15.080 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:15.080 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 01:38:15.090 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 01:38:15.090 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:15.090 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:38:15.090 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:38:15.090 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 01:38:15.090 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 01:38:15.130 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:38:15.130 -07 000000430 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 01:38:15.310 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 01:38:15.310 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:38:15.360 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:15.360 -07 000000576 INF: FPGA: Recv YRDPOS 137977
17-03-18 01:38:15.370 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:38:15.370 -07 000000479 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:15.370 -07 000000479 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 01:38:15.370 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-18 01:38:16.320 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:16.320 -07 000000576 INF: FPGA: Recv YRDPOS 137978
17-03-18 01:38:16.330 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:38:16.330 -07 000000479 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:16.350 -07 000000479 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:38:16.350 -07 000000479 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:38:16.350 -07 000000479 INF: Y Motor: Moved to 67.3721 after 1447 ms (table move)
17-03-18 01:38:16.360 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137414 mm (DAC = 30018)
17-03-18 01:38:16.360 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:16.360 -07 000000626 INF: FPGA: Recv ZSGSRD 30678
17-03-18 01:38:16.370 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:38:16.370 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:16.370 -07 000000626 INF: FPGA: Recv ZSGSRD 30676
17-03-18 01:38:16.380 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:16.380 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:16.380 -07 000000626 INF: FPGA: Recv ZSGSRD 30682
17-03-18 01:38:16.390 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:16.390 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:16.390 -07 000000474 INF: FPGA: Recv ZSGSRD 30685
17-03-18 01:38:16.400 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:16.400 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:16.400 -07 000000626 INF: FPGA: Recv ZSGSRD 30687
17-03-18 01:38:16.410 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:16.410 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:16.410 -07 000000626 INF: FPGA: Recv ZSGSRD 30679
17-03-18 01:38:16.420 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:16.420 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:16.420 -07 000000474 INF: FPGA: Recv ZSGSRD 30683
17-03-18 01:38:16.430 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:16.430 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:16.430 -07 000000626 INF: FPGA: Recv ZSGSRD 30671
17-03-18 01:38:16.440 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:16.440 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:16.440 -07 000000629 INF: FPGA: Recv ZSGSRD 30681
17-03-18 01:38:16.450 -07 000000447 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:16.450 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:16.450 -07 000000629 INF: FPGA: Recv ZSGSRD 30686
17-03-18 01:38:16.460 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:16.460 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:38:16.460 -07 000000438 INF: FPGA: Recv ZPIEZORD 26489
17-03-18 01:38:16.470 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:16.470 -07 000000447 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.580 V. Piezo Error = -9.2 V.
17-03-18 01:38:16.470 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30681 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30682 (-136.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30671 (-136.6 uncal um), Max = 30687 (-136.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 01:38:16.470 -07 000000447 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30681, posNoise = 6, negNoise = 10
17-03-18 01:38:16.470 -07 000000447 INF: Z Motor: After move to -0.137414, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:38:16.470 -07 000000447 INF: Z Motor: Settle wait time = 1451 ms, measure time = 109 ms (allowed 150 ms), total time = 1560 ms
17-03-18 01:38:16.470 -07 000000447 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:38:16.520 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 01:38:16.520 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:38:16.520 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:38:16.520 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:38:16.520 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:38:16.520 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:38:16.520 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:38:16.520 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:38:16.520 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:38:16.520 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:38:16.530 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:38:16.530 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:38:16.530 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:38:16.530 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 01:38:16.540 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:38:16.580 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:38:16.880 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:38:16.880 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:38:16.880 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:38:16.880 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 01:38:16.920 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:38:16.920 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 01:38:16.920 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall
17-03-18 01:38:17.010 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 128 ms.
17-03-18 01:38:17.010 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:17.010 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:38:17.010 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 01:38:17.120 -07 000000585 INF: Autofocus start
17-03-18 01:38:17.120 -07 000000585 INF: MeasureProfile start
17-03-18 01:38:17.120 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:38:17.120 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:38:17.130 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:38:17.130 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:38:17.130 -07 000000585 INF: MeasureProfile done
17-03-18 01:38:17.130 -07 000000585 INF: X=-8  Z correction [um]=-0.04234553
17-03-18 01:38:17.130 -07 000000585 INF: Autofocus finished
17-03-18 01:38:17.280 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:38:17.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:38:17.330 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:38:17.330 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 01:38:17.330 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137424604732503. ----------
17-03-18 01:38:17.330 -07 000000610 INF: Cycle	89	Tile	10	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:38:17.340 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28522, sync = True, waitForSettling = True)
17-03-18 01:38:17.340 -07 000000610 INF: Z Motor: Moving to -0.130565 mm, started at -0.137425 mm, distance = 6.86 um
17-03-18 01:38:17.340 -07 000000610 INF: FPGA: Xmit ZDACW 28522\n [Z Motor]
17-03-18 01:38:17.340 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 01:38:17.350 -07 000000610 INF: FPGA: 'ZDACW 28522' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:38:17.350 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:38:17.350 -07 000000430 INF: FPGA: Recv ZDACR 28522
17-03-18 01:38:17.360 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:17.360 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:38:17.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:17.510 -07 000000430 INF: FPGA: Recv ZSGSRD 29617
17-03-18 01:38:17.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:38:17.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:17.520 -07 000000430 INF: FPGA: Recv ZSGSRD 29619
17-03-18 01:38:17.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:17.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:17.530 -07 000000430 INF: FPGA: Recv ZSGSRD 29614
17-03-18 01:38:17.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:17.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:17.540 -07 000000430 INF: FPGA: Recv ZSGSRD 29615
17-03-18 01:38:17.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:17.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:17.550 -07 000000629 INF: FPGA: Recv ZSGSRD 29614
17-03-18 01:38:17.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:17.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:17.560 -07 000000629 INF: FPGA: Recv ZSGSRD 29610
17-03-18 01:38:17.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:17.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:17.570 -07 000000629 INF: FPGA: Recv ZSGSRD 29608
17-03-18 01:38:17.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:17.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:17.580 -07 000000629 INF: FPGA: Recv ZSGSRD 29613
17-03-18 01:38:17.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:17.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:17.590 -07 000000629 INF: FPGA: Recv ZSGSRD 29608
17-03-18 01:38:17.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:17.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:17.600 -07 000000629 INF: FPGA: Recv ZSGSRD 29617
17-03-18 01:38:17.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:17.610 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:38:17.610 -07 000000629 INF: FPGA: Recv ZPIEZORD 25133
17-03-18 01:38:17.620 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:17.620 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.352 V. Piezo Error = -9.8 V.
17-03-18 01:38:17.620 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29614 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29614 (-129.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29608 (-129.8 uncal um), Max = 29619 (-129.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:38:17.620 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29614, posNoise = 5, negNoise = 6
17-03-18 01:38:17.620 -07 000000610 INF: Z Motor: After move to -0.130565, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:38:17.620 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:38:17.620 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:38:17.620 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:38:17.620 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:38:17.620 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:38:17.620 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:38:17.620 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:38:17.620 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:38:17.620 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:38:17.620 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:38:17.620 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:38:17.620 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:38:17.620 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:38:17.620 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:38:17.620 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:38:17.630 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:38:17.630 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:38:17.630 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:38:17.630 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:38:17.640 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:38:17.640 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:38:17.640 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28698 150\n [Camera]
17-03-18 01:38:17.800 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 3.999021,
17-03-18 01:38:17.840 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:38:18.230 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:38:18.230 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:38:18.230 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:38:18.230 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:38:18.230 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-18 01:38:18.230 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:38:18.230 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:38:18.230 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:38:18.350 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:38:18.350 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 01:38:18.420 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28698 776
17-03-18 01:38:18.570 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:38:18.620 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 01:38:18.620 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 01:38:18.620 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:18.620 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:38:18.620 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:38:18.740 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 01:38:18.740 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 01:38:18.740 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:18.740 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:38:18.750 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 516 ms.
17-03-18 01:38:18.760 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:38:18.760 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:38:18.760 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:38:18.760 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:38:18.760 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:38:18.770 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:38:18.770 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:38:18.770 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:38:18.770 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:38:18.780 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) start.
17-03-18 01:38:18.960 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 01:38:18.960 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:38:18.960 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28698 150' command took 2 ms to send, 1311 ms to get response, and 1317 ms overall
17-03-18 01:38:18.960 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.130924
17-03-18 01:38:18.960 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13092 mm
17-03-18 01:38:18.960 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:38:18.960 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 01:38:18.960 -07 000000629 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 01:38:18.960 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:18.960 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 28600, sync = True, waitForSettling = False)
17-03-18 01:38:18.960 -07 000000430 INF: Z Motor: Moving to -0.130922 mm, started at -0.130570 mm, distance = -0.35 um
17-03-18 01:38:18.970 -07 000000430 INF: FPGA: Xmit ZDACW 28600\n [Z Motor]
17-03-18 01:38:19.180 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 01:38:19.180 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:38:19.180 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:19.180 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 01:38:19.180 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 01:38:19.180 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:19.180 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:38:19.180 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 419 ms.
17-03-18 01:38:19.180 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:38:19.190 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 423 ms.
17-03-18 01:38:19.190 -07 000000474 INF: FPGA: Recv YRDPOS 137978
17-03-18 01:38:19.190 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:38:19.190 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 226 ms to get response, and 230 ms overall
17-03-18 01:38:19.190 -07 000000629 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:19.190 -07 000000629 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:38:19.190 -07 000000629 INF: Y Motor: Moving 1345 steps-23
17-03-18 01:38:19.190 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:38:19.190 -07 000000430 INF: FPGA: 'ZDACW 28600' command took 0 ms to send, 216 ms to get response, and 229 ms overall
17-03-18 01:38:19.200 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:38:19.200 -07 000000474 INF: FPGA: Recv ZDACR 28600
17-03-18 01:38:19.210 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:38:19.210 -07 000000430 INF: Z Motor: MoveAbsStepped took 243 ms (did NOT wait for settling yet))
17-03-18 01:38:19.570 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 01:38:19.570 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 375 ms to get response, and 378 ms overall
17-03-18 01:38:19.610 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:19.620 -07 000000430 INF: FPGA: Recv YRDPOS 139684
17-03-18 01:38:19.620 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:38:19.620 -07 000000629 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:19.620 -07 000000629 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 01:38:19.620 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.841 mm, average velocity = 2.224 mm/sec
17-03-18 01:38:20.570 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:20.570 -07 000000455 INF: FPGA: Recv YRDPOS 139685
17-03-18 01:38:20.580 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:38:20.580 -07 000000629 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:20.600 -07 000000629 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:38:20.600 -07 000000629 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:38:20.600 -07 000000629 INF: Y Motor: Moved to 68.2056 after 1639 ms (table move)
17-03-18 01:38:20.600 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130922 mm (DAC = 28600)
17-03-18 01:38:20.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:20.610 -07 000000430 INF: FPGA: Recv ZSGSRD 29666
17-03-18 01:38:20.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:38:20.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:20.610 -07 000000474 INF: FPGA: Recv ZSGSRD 29677
17-03-18 01:38:20.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:38:20.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:20.620 -07 000000585 INF: FPGA: Recv ZSGSRD 29663
17-03-18 01:38:20.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:20.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:20.630 -07 000000561 INF: FPGA: Recv ZSGSRD 29661
17-03-18 01:38:20.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:20.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:20.640 -07 000000455 INF: FPGA: Recv ZSGSRD 29663
17-03-18 01:38:20.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:20.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:20.650 -07 000000629 INF: FPGA: Recv ZSGSRD 29663
17-03-18 01:38:20.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:20.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:20.660 -07 000000474 INF: FPGA: Recv ZSGSRD 29675
17-03-18 01:38:20.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:20.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:20.670 -07 000000629 INF: FPGA: Recv ZSGSRD 29670
17-03-18 01:38:20.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:20.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:20.680 -07 000000474 INF: FPGA: Recv ZSGSRD 29677
17-03-18 01:38:20.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:20.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:20.690 -07 000000629 INF: FPGA: Recv ZSGSRD 29673
17-03-18 01:38:20.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:20.700 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:38:20.700 -07 000000512 INF: FPGA: Recv ZPIEZORD 25213
17-03-18 01:38:20.710 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:20.710 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.364 V. Piezo Error = -9.8 V.
17-03-18 01:38:20.710 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29669 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29668 (-130.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29661 (-130.1 uncal um), Max = 29677 (-130.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:38:20.710 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29669, posNoise = 8, negNoise = 8
17-03-18 01:38:20.710 -07 000000610 INF: Z Motor: After move to -0.130922, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:38:20.710 -07 000000610 INF: Z Motor: Settle wait time = 1641 ms, measure time = 102 ms (allowed 150 ms), total time = 1743 ms
17-03-18 01:38:20.710 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 01:38:20.760 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1796 ms
17-03-18 01:38:20.760 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:38:20.760 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.130923302045041. ----------
17-03-18 01:38:20.760 -07 000000610 INF: Cycle	89	Tile	11	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:38:20.760 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28424, sync = True, waitForSettling = True)
17-03-18 01:38:20.760 -07 000000610 INF: Z Motor: Moving to -0.130117 mm, started at -0.130923 mm, distance = 0.81 um
17-03-18 01:38:20.760 -07 000000610 INF: FPGA: Xmit ZDACW 28424\n [Z Motor]
17-03-18 01:38:20.760 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 01:38:20.770 -07 000000610 INF: FPGA: 'ZDACW 28424' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:38:20.770 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:38:20.770 -07 000000561 INF: FPGA: Recv ZDACR 28424
17-03-18 01:38:20.780 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:20.780 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:38:20.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:20.930 -07 000000455 INF: FPGA: Recv ZSGSRD 29542
17-03-18 01:38:20.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:38:20.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:20.940 -07 000000430 INF: FPGA: Recv ZSGSRD 29547
17-03-18 01:38:20.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:20.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:20.950 -07 000000561 INF: FPGA: Recv ZSGSRD 29542
17-03-18 01:38:20.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:20.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:20.960 -07 000000585 INF: FPGA: Recv ZSGSRD 29535
17-03-18 01:38:20.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:20.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:20.970 -07 000000430 INF: FPGA: Recv ZSGSRD 29547
17-03-18 01:38:20.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:20.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:20.980 -07 000000455 INF: FPGA: Recv ZSGSRD 29549
17-03-18 01:38:20.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:20.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:20.990 -07 000000512 INF: FPGA: Recv ZSGSRD 29549
17-03-18 01:38:21.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:21.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:21.000 -07 000000430 INF: FPGA: Recv ZSGSRD 29545
17-03-18 01:38:21.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:21.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:21.010 -07 000000585 INF: FPGA: Recv ZSGSRD 29545
17-03-18 01:38:21.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:21.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:21.020 -07 000000512 INF: FPGA: Recv ZSGSRD 29556
17-03-18 01:38:21.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:21.030 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:38:21.030 -07 000000455 INF: FPGA: Recv ZPIEZORD 25037
17-03-18 01:38:21.040 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:21.040 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.337 V. Piezo Error = -9.9 V.
17-03-18 01:38:21.040 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29546 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29546 (-129.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 29535 (-129.3 uncal um), Max = 29556 (-129.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 01:38:21.040 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29546, posNoise = 10, negNoise = 11
17-03-18 01:38:21.040 -07 000000610 INF: Z Motor: After move to -0.130117, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:38:21.040 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 01:38:21.040 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:38:21.040 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:38:21.040 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:38:21.040 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:38:21.040 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:38:21.040 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:38:21.040 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:38:21.040 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:38:21.040 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:38:21.040 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:38:21.040 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:38:21.040 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:38:21.050 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:38:21.050 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:38:21.050 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:38:21.050 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:38:21.060 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 01:38:21.060 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:38:21.060 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:38:21.060 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:38:21.070 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28600 150\n [Camera]
17-03-18 01:38:21.270 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:38:21.660 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:38:21.660 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:38:21.660 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:38:21.660 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:38:21.660 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) start.
17-03-18 01:38:21.660 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:38:21.660 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:38:21.660 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:38:21.660 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:38:21.660 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 01:38:21.850 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28600 776
17-03-18 01:38:22.000 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:38:22.040 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 01:38:22.040 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 01:38:22.040 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:22.040 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:38:22.040 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 01:38:22.040 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 01:38:22.040 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:22.050 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:38:22.050 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 01:38:22.050 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 01:38:22.190 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:38:22.190 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:38:22.190 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:38:22.310 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:38:22.310 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:38:22.310 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:38:22.310 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:38:22.310 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:38:22.310 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:38:22.310 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:38:22.310 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:38:22.310 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) start.
17-03-18 01:38:22.380 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:38:22.380 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:38:22.380 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28600 150' command took 5 ms to send, 1305 ms to get response, and 1314 ms overall
17-03-18 01:38:22.380 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.130736
17-03-18 01:38:22.380 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13074 mm
17-03-18 01:38:22.380 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:38:22.390 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 01:38:22.390 -07 000000455 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-18 01:38:22.390 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:22.390 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 28559, sync = True, waitForSettling = False)
17-03-18 01:38:22.390 -07 000000444 INF: Z Motor: Moving to -0.130735 mm, started at -0.130133 mm, distance = -0.60 um
17-03-18 01:38:22.400 -07 000000444 INF: FPGA: Xmit ZDACW 28559\n [Z Motor]
17-03-18 01:38:22.710 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:38:22.710 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:38:22.710 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:22.710 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:38:22.710 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:38:22.710 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:22.710 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:38:22.710 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-18 01:38:22.720 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:38:22.720 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 01:38:22.730 -07 000000585 INF: FPGA: Recv YRDPOS 139685
17-03-18 01:38:22.730 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 01:38:22.730 -07 000000444 INF: FPGA: 'ZDACW 28559' command took 0 ms to send, 329 ms to get response, and 348 ms overall
17-03-18 01:38:22.730 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:38:22.740 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 339 ms to get response, and 349 ms overall
17-03-18 01:38:22.740 -07 000000455 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:22.740 -07 000000455 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:38:22.740 -07 000000455 INF: Y Motor: Moving 1339 steps-15
17-03-18 01:38:22.740 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:38:22.740 -07 000000585 INF: FPGA: Recv ZDACR 28559
17-03-18 01:38:22.740 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:38:22.740 -07 000000444 INF: Z Motor: MoveAbsStepped took 352 ms (did NOT wait for settling yet))
17-03-18 01:38:23.120 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 01:38:23.120 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 370 ms to get response, and 379 ms overall
17-03-18 01:38:23.160 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 4.020806,
17-03-18 01:38:23.180 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:23.180 -07 000000444 INF: FPGA: Recv YRDPOS 141368
17-03-18 01:38:23.190 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:38:23.190 -07 000000455 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:23.190 -07 000000455 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 01:38:23.190 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.837 mm, average velocity = 2.209 mm/sec
17-03-18 01:38:24.140 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:24.140 -07 000000585 INF: FPGA: Recv YRDPOS 141368
17-03-18 01:38:24.150 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:38:24.150 -07 000000455 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:24.170 -07 000000455 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:38:24.170 -07 000000455 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:38:24.170 -07 000000455 INF: Y Motor: Moved to 69.0273 after 1786 ms (table move)
17-03-18 01:38:24.170 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130735 mm (DAC = 28559)
17-03-18 01:38:24.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:24.180 -07 000000585 INF: FPGA: Recv ZSGSRD 29637
17-03-18 01:38:24.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 01:38:24.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:24.180 -07 000000455 INF: FPGA: Recv ZSGSRD 29644
17-03-18 01:38:24.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:38:24.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:24.190 -07 000000444 INF: FPGA: Recv ZSGSRD 29636
17-03-18 01:38:24.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:24.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:24.200 -07 000000444 INF: FPGA: Recv ZSGSRD 29641
17-03-18 01:38:24.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:24.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:24.210 -07 000000444 INF: FPGA: Recv ZSGSRD 29639
17-03-18 01:38:24.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:24.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:24.220 -07 000000455 INF: FPGA: Recv ZSGSRD 29641
17-03-18 01:38:24.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:24.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:24.230 -07 000000444 INF: FPGA: Recv ZSGSRD 29650
17-03-18 01:38:24.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:24.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:24.240 -07 000000585 INF: FPGA: Recv ZSGSRD 29643
17-03-18 01:38:24.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:24.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:24.250 -07 000000455 INF: FPGA: Recv ZSGSRD 29639
17-03-18 01:38:24.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:24.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:24.260 -07 000000447 INF: FPGA: Recv ZSGSRD 29640
17-03-18 01:38:24.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:24.270 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:38:24.270 -07 000000480 INF: FPGA: Recv ZPIEZORD 25181
17-03-18 01:38:24.280 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:24.280 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.358 V. Piezo Error = -9.8 V.
17-03-18 01:38:24.280 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29641 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29640 (-130.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29636 (-129.9 uncal um), Max = 29650 (-130.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:38:24.280 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29641, posNoise = 9, negNoise = 5
17-03-18 01:38:24.280 -07 000000610 INF: Z Motor: After move to -0.130735, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:38:24.280 -07 000000610 INF: Z Motor: Settle wait time = 1788 ms, measure time = 101 ms (allowed 150 ms), total time = 1889 ms
17-03-18 01:38:24.280 -07 000000610 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 01:38:24.330 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1942 ms
17-03-18 01:38:24.330 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:38:24.330 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.130743424105072. ----------
17-03-18 01:38:24.330 -07 000000610 INF: Cycle	89	Tile	12	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:38:24.330 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28382, sync = True, waitForSettling = True)
17-03-18 01:38:24.330 -07 000000610 INF: Z Motor: Moving to -0.129924 mm, started at -0.130743 mm, distance = 0.82 um
17-03-18 01:38:24.330 -07 000000610 INF: FPGA: Xmit ZDACW 28382\n [Z Motor]
17-03-18 01:38:24.330 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 01:38:24.340 -07 000000610 INF: FPGA: 'ZDACW 28382' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:38:24.340 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:38:24.340 -07 000000585 INF: FPGA: Recv ZDACR 28382
17-03-18 01:38:24.350 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:24.350 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:38:24.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:24.500 -07 000000444 INF: FPGA: Recv ZSGSRD 29517
17-03-18 01:38:24.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:38:24.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:24.510 -07 000000585 INF: FPGA: Recv ZSGSRD 29514
17-03-18 01:38:24.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:24.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:24.520 -07 000000447 INF: FPGA: Recv ZSGSRD 29513
17-03-18 01:38:24.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:24.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:24.530 -07 000000455 INF: FPGA: Recv ZSGSRD 29516
17-03-18 01:38:24.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:24.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:24.550 -07 000000625 INF: FPGA: Recv ZSGSRD 29523
17-03-18 01:38:24.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:38:24.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:24.560 -07 000000447 INF: FPGA: Recv ZSGSRD 29513
17-03-18 01:38:24.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:24.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:24.570 -07 000000585 INF: FPGA: Recv ZSGSRD 29510
17-03-18 01:38:24.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:24.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:24.580 -07 000000480 INF: FPGA: Recv ZSGSRD 29517
17-03-18 01:38:24.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:24.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:24.590 -07 000000585 INF: FPGA: Recv ZSGSRD 29510
17-03-18 01:38:24.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:24.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:24.600 -07 000000625 INF: FPGA: Recv ZSGSRD 29515
17-03-18 01:38:24.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:24.610 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:38:24.610 -07 000000455 INF: FPGA: Recv ZPIEZORD 25026
17-03-18 01:38:24.620 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:24.620 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.331 V. Piezo Error = -9.8 V.
17-03-18 01:38:24.620 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29515 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29514 (-129.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29510 (-129.1 uncal um), Max = 29523 (-129.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:38:24.620 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29515, posNoise = 8, negNoise = 5
17-03-18 01:38:24.620 -07 000000610 INF: Z Motor: After move to -0.129924, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:38:24.620 -07 000000610 INF: Z Motor: MoveAbsStepped took 287 ms)
17-03-18 01:38:24.620 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:38:24.620 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:38:24.620 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:38:24.620 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:38:24.620 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:38:24.620 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:38:24.620 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:38:24.620 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:38:24.620 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:38:24.620 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:38:24.620 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:38:24.620 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:38:24.630 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:38:24.630 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:38:24.630 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:38:24.630 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:38:24.640 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 01:38:24.640 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 01:38:24.640 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 01:38:24.640 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 01:38:24.640 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28559 150\n [Camera]
17-03-18 01:38:24.840 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:38:25.230 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:38:25.230 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:38:25.230 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:38:25.230 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:38:25.230 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:38:25.240 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:38:25.240 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:38:25.240 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:38:25.240 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:38:25.240 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) start.
17-03-18 01:38:25.430 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28559 776
17-03-18 01:38:25.570 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:38:25.630 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 01:38:25.630 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 01:38:25.630 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:25.630 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:38:25.630 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:38:25.630 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:38:25.630 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:25.630 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:38:25.630 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:38:25.640 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:38:25.760 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:38:25.760 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:38:25.760 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:38:25.760 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:38:25.760 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-18 01:38:25.770 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:38:25.770 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:38:25.770 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:38:25.880 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:38:25.880 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 01:38:25.960 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 01:38:25.960 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:38:25.960 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28559 150' command took 2 ms to send, 1312 ms to get response, and 1315 ms overall
17-03-18 01:38:25.960 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.130376
17-03-18 01:38:25.960 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13038 mm
17-03-18 01:38:25.960 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:38:25.960 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 01:38:25.960 -07 000000455 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 01:38:25.960 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 28481, sync = True, waitForSettling = False)
17-03-18 01:38:25.960 -07 000000444 INF: Z Motor: Moving to -0.130378 mm, started at -0.129934 mm, distance = -0.44 um
17-03-18 01:38:25.960 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:25.970 -07 000000444 INF: FPGA: Xmit ZDACW 28481\n [Z Motor]
17-03-18 01:38:25.970 -07 000000626 INF: FPGA: Recv YRDPOS 141368
17-03-18 01:38:25.970 -07 000000455 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:38:25.970 -07 000000455 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:25.970 -07 000000455 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:38:25.970 -07 000000455 INF: Y Motor: Moving 1352 steps-31
17-03-18 01:38:25.970 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 01:38:25.980 -07 000000444 INF: FPGA: 'ZDACW 28481' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:38:25.980 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:38:25.990 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:38:26.160 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:38:26.160 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:38:26.160 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:26.160 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:38:26.160 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:38:26.280 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:38:26.280 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:38:26.280 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:26.280 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:38:26.290 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 522 ms.
17-03-18 01:38:27.210 -07 000000438 INF: FPGA: Recv ZDACR 28481
17-03-18 01:38:27.210 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-18 01:38:27.210 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 1210 ms to get response, and 1239 ms overall
17-03-18 01:38:27.210 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 1220 ms to get response, and 1230 ms overall
17-03-18 01:38:27.210 -07 000000444 INF: Z Motor: MoveAbsStepped took 1244 ms (did NOT wait for settling yet))
17-03-18 01:38:27.250 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:27.260 -07 000000444 INF: FPGA: Recv YRDPOS 143080
17-03-18 01:38:27.260 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-18 01:38:27.260 -07 000000455 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:27.260 -07 000000455 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 01:38:27.260 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1239 ms, distance = 0.845 mm, average velocity = 0.682 mm/sec
17-03-18 01:38:27.280 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:38:27.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:38:28.210 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:28.210 -07 000000479 INF: FPGA: Recv YRDPOS 143080
17-03-18 01:38:28.220 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:38:28.220 -07 000000455 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:28.240 -07 000000455 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:38:28.240 -07 000000455 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:38:28.240 -07 000000455 INF: Y Motor: Moved to 69.8633 after 2282 ms (table move)
17-03-18 01:38:28.250 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130378 mm (DAC = 28481)
17-03-18 01:38:28.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:28.250 -07 000000479 INF: FPGA: Recv ZSGSRD 29587
17-03-18 01:38:28.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:38:28.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:28.260 -07 000000455 INF: FPGA: Recv ZSGSRD 29584
17-03-18 01:38:28.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:28.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:28.270 -07 000000626 INF: FPGA: Recv ZSGSRD 29583
17-03-18 01:38:28.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:28.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:28.280 -07 000000479 INF: FPGA: Recv ZSGSRD 29580
17-03-18 01:38:28.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:28.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:28.290 -07 000000626 INF: FPGA: Recv ZSGSRD 29581
17-03-18 01:38:28.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:28.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:28.300 -07 000000626 INF: FPGA: Recv ZSGSRD 29581
17-03-18 01:38:28.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:28.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:28.310 -07 000000479 INF: FPGA: Recv ZSGSRD 29582
17-03-18 01:38:28.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:28.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:28.320 -07 000000444 INF: FPGA: Recv ZSGSRD 29582
17-03-18 01:38:28.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:28.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:28.330 -07 000000479 INF: FPGA: Recv ZSGSRD 29585
17-03-18 01:38:28.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:28.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:28.340 -07 000000626 INF: FPGA: Recv ZSGSRD 29587
17-03-18 01:38:28.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:28.350 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:38:28.350 -07 000000626 INF: FPGA: Recv ZPIEZORD 25138
17-03-18 01:38:28.360 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:28.360 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.346 V. Piezo Error = -9.8 V.
17-03-18 01:38:28.360 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29583 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29582 (-129.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29580 (-129.6 uncal um), Max = 29587 (-129.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:38:28.360 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29583, posNoise = 4, negNoise = 3
17-03-18 01:38:28.360 -07 000000610 INF: Z Motor: After move to -0.130378, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:38:28.360 -07 000000610 INF: Z Motor: Settle wait time = 2284 ms, measure time = 109 ms (allowed 150 ms), total time = 2393 ms
17-03-18 01:38:28.360 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:38:28.410 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2445 ms
17-03-18 01:38:28.410 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:38:28.410 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.130370819800849. ----------
17-03-18 01:38:28.410 -07 000000610 INF: Cycle	89	Tile	13	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:38:28.410 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28304, sync = True, waitForSettling = True)
17-03-18 01:38:28.410 -07 000000610 INF: Z Motor: Moving to -0.129567 mm, started at -0.130371 mm, distance = 0.80 um
17-03-18 01:38:28.410 -07 000000610 INF: FPGA: Xmit ZDACW 28304\n [Z Motor]
17-03-18 01:38:28.410 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 01:38:28.420 -07 000000610 INF: FPGA: 'ZDACW 28304' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:38:28.420 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:38:28.420 -07 000000438 INF: FPGA: Recv ZDACR 28304
17-03-18 01:38:28.430 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:28.430 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:38:28.540 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 3.994908,
17-03-18 01:38:28.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:28.580 -07 000000455 INF: FPGA: Recv ZSGSRD 29458
17-03-18 01:38:28.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:38:28.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:28.590 -07 000000479 INF: FPGA: Recv ZSGSRD 29458
17-03-18 01:38:28.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:28.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:28.600 -07 000000455 INF: FPGA: Recv ZSGSRD 29460
17-03-18 01:38:28.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:28.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:28.610 -07 000000479 INF: FPGA: Recv ZSGSRD 29460
17-03-18 01:38:28.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:28.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:28.620 -07 000000438 INF: FPGA: Recv ZSGSRD 29456
17-03-18 01:38:28.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:28.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:28.630 -07 000000455 INF: FPGA: Recv ZSGSRD 29461
17-03-18 01:38:28.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:28.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:28.640 -07 000000455 INF: FPGA: Recv ZSGSRD 29456
17-03-18 01:38:28.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:28.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:28.650 -07 000000479 INF: FPGA: Recv ZSGSRD 29454
17-03-18 01:38:28.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:28.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:28.660 -07 000000455 INF: FPGA: Recv ZSGSRD 29455
17-03-18 01:38:28.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:28.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:28.670 -07 000000444 INF: FPGA: Recv ZSGSRD 29457
17-03-18 01:38:28.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:28.680 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:38:28.680 -07 000000438 INF: FPGA: Recv ZPIEZORD 25004
17-03-18 01:38:28.690 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:28.690 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.319 V. Piezo Error = -9.8 V.
17-03-18 01:38:28.690 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29458 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29458 (-128.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29454 (-128.8 uncal um), Max = 29461 (-128.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:38:28.690 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29458, posNoise = 3, negNoise = 4
17-03-18 01:38:28.690 -07 000000610 INF: Z Motor: After move to -0.129567, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:38:28.690 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 01:38:28.690 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:38:28.690 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:38:28.690 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:38:28.690 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:38:28.690 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:38:28.690 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:38:28.690 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:38:28.690 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:38:28.690 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:38:28.690 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:38:28.700 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:38:28.700 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:38:28.700 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:38:28.700 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:38:28.700 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:38:28.700 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:38:28.710 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:38:28.710 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:38:28.710 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 01:38:28.710 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:38:28.710 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28481 150\n [Camera]
17-03-18 01:38:28.910 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:38:29.300 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:38:29.300 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:38:29.300 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:38:29.300 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:38:29.300 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:38:29.310 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:38:29.310 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) start.
17-03-18 01:38:29.310 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:38:29.310 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:38:29.310 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) start.
17-03-18 01:38:29.490 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28481 776
17-03-18 01:38:29.640 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:38:29.700 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 01:38:29.700 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:38:29.700 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:29.710 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:38:29.710 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:38:29.710 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 01:38:29.710 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:38:29.710 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:29.720 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:38:29.720 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:38:29.830 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:38:29.830 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:38:29.830 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:38:29.830 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:38:29.830 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:38:29.830 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:38:29.830 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:38:29.830 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:38:29.830 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:38:29.830 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) start.
17-03-18 01:38:30.020 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:38:30.020 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:38:30.020 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28481 150' command took 2 ms to send, 1308 ms to get response, and 1314 ms overall
17-03-18 01:38:30.030 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:38:30.030 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.129567793283129. ------
17-03-18 01:38:30.030 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:38:30.030 -07 000000430 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13548 mm
17-03-18 01:38:30.030 -07 000000430 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:38:30.030 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:38:30.030 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29596, sync = True, waitForSettling = False)
17-03-18 01:38:30.030 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 01:38:30.030 -07 000000512 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-18 01:38:30.030 -07 000000569 INF: Z Motor: Moving to -0.135482 mm, started at -0.129568 mm, distance = -5.91 um
17-03-18 01:38:30.040 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:38:30.040 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:30.040 -07 000000561 INF: FPGA: Recv YRDPOS 143080
17-03-18 01:38:30.050 -07 000000569 INF: FPGA: Xmit ZDACW 29596\n [Z Motor]
17-03-18 01:38:30.050 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:38:30.050 -07 000000512 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:30.050 -07 000000512 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:38:30.050 -07 000000512 INF: Y Motor: Moving 1343 steps-19
17-03-18 01:38:30.050 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 01:38:30.060 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:38:30.060 -07 000000569 INF: FPGA: 'ZDACW 29596' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 01:38:30.070 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:38:30.080 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:38:30.080 -07 000000576 INF: FPGA: Recv ZDACR 29596
17-03-18 01:38:30.090 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:38:30.090 -07 000000569 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 01:38:30.230 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 01:38:30.230 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:38:30.230 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:30.240 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:38:30.240 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:38:30.240 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:30.240 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:38:30.240 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 01:38:30.240 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:38:30.250 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:38:30.260 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:38:30.260 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:38:30.440 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 01:38:30.440 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:38:30.490 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:30.490 -07 000000474 INF: FPGA: Recv YRDPOS 144770
17-03-18 01:38:30.500 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:38:30.500 -07 000000512 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:30.500 -07 000000512 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 01:38:30.500 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-18 01:38:31.450 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:31.450 -07 000000474 INF: FPGA: Recv YRDPOS 144770
17-03-18 01:38:31.460 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:31.460 -07 000000512 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:31.480 -07 000000512 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:38:31.480 -07 000000512 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:38:31.480 -07 000000512 INF: Y Motor: Moved to 70.6885 after 1448 ms (table move)
17-03-18 01:38:31.490 -07 000000430 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135482 mm (DAC = 29596)
17-03-18 01:38:31.490 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:31.490 -07 000000626 INF: FPGA: Recv ZSGSRD 30378
17-03-18 01:38:31.500 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:38:31.500 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:31.500 -07 000000576 INF: FPGA: Recv ZSGSRD 30379
17-03-18 01:38:31.510 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:31.510 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:31.510 -07 000000474 INF: FPGA: Recv ZSGSRD 30382
17-03-18 01:38:31.520 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:31.520 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:31.520 -07 000000576 INF: FPGA: Recv ZSGSRD 30381
17-03-18 01:38:31.530 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:31.530 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:31.530 -07 000000569 INF: FPGA: Recv ZSGSRD 30383
17-03-18 01:38:31.540 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:31.540 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:31.540 -07 000000455 INF: FPGA: Recv ZSGSRD 30378
17-03-18 01:38:31.550 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:31.550 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:31.550 -07 000000474 INF: FPGA: Recv ZSGSRD 30380
17-03-18 01:38:31.560 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:31.560 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:31.560 -07 000000455 INF: FPGA: Recv ZSGSRD 30381
17-03-18 01:38:31.570 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:31.570 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:31.570 -07 000000576 INF: FPGA: Recv ZSGSRD 30376
17-03-18 01:38:31.580 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:31.580 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:31.580 -07 000000576 INF: FPGA: Recv ZSGSRD 30382
17-03-18 01:38:31.590 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:31.590 -07 000000430 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:38:31.590 -07 000000474 INF: FPGA: Recv ZPIEZORD 26188
17-03-18 01:38:31.600 -07 000000430 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:31.600 -07 000000430 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.516 V. Piezo Error = -9.2 V.
17-03-18 01:38:31.600 -07 000000430 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30380 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30380 (-134.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30376 (-134.7 uncal um), Max = 30383 (-134.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:38:31.600 -07 000000430 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30380, posNoise = 3, negNoise = 4
17-03-18 01:38:31.600 -07 000000430 INF: Z Motor: After move to -0.135482, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:38:31.600 -07 000000430 INF: Z Motor: Settle wait time = 1452 ms, measure time = 110 ms (allowed 150 ms), total time = 1562 ms
17-03-18 01:38:31.600 -07 000000430 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:38:31.640 -07 000000430 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-18 01:38:31.640 -07 000000430 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:38:31.640 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:38:31.640 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:38:31.640 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:38:31.640 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:38:31.640 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:38:31.640 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:38:31.640 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:38:31.640 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:38:31.650 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:38:31.650 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:38:31.650 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 01:38:31.650 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 01:38:31.660 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:38:31.700 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:38:32.000 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:38:32.000 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:38:32.000 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:38:32.010 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-18 01:38:32.040 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:38:32.040 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 01:38:32.040 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 01:38:32.120 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:38:32.120 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:32.120 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:38:32.120 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:38:32.140 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:38:32.140 -07 000000474 INF: Autofocus start
17-03-18 01:38:32.140 -07 000000474 INF: MeasureProfile start
17-03-18 01:38:32.140 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:38:32.150 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:38:32.150 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:38:32.150 -07 000000474 INF: MeasureProfile done
17-03-18 01:38:32.150 -07 000000474 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:38:32.150 -07 000000474 INF: Autofocus finished
17-03-18 01:38:32.280 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:38:32.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:38:32.350 -07 000000430 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:38:32.350 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:38:32.350 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.135490916877833. ----------
17-03-18 01:38:32.350 -07 000000610 INF: Cycle	89	Tile	14	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:38:32.360 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28104, sync = True, waitForSettling = True)
17-03-18 01:38:32.360 -07 000000610 INF: Z Motor: Moving to -0.128652 mm, started at -0.135491 mm, distance = 6.84 um
17-03-18 01:38:32.360 -07 000000610 INF: FPGA: Xmit ZDACW 28104\n [Z Motor]
17-03-18 01:38:32.360 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:38:32.370 -07 000000610 INF: FPGA: 'ZDACW 28104' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:32.370 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:38:32.370 -07 000000474 INF: FPGA: Recv ZDACR 28104
17-03-18 01:38:32.380 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:32.380 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:38:32.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:32.530 -07 000000474 INF: FPGA: Recv ZSGSRD 29315
17-03-18 01:38:32.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:38:32.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:32.540 -07 000000430 INF: FPGA: Recv ZSGSRD 29321
17-03-18 01:38:32.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:38:32.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:32.550 -07 000000576 INF: FPGA: Recv ZSGSRD 29314
17-03-18 01:38:32.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:32.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:32.560 -07 000000430 INF: FPGA: Recv ZSGSRD 29314
17-03-18 01:38:32.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:32.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:32.570 -07 000000474 INF: FPGA: Recv ZSGSRD 29321
17-03-18 01:38:32.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:32.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:32.580 -07 000000430 INF: FPGA: Recv ZSGSRD 29314
17-03-18 01:38:32.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:32.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:32.590 -07 000000512 INF: FPGA: Recv ZSGSRD 29319
17-03-18 01:38:32.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:32.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:32.600 -07 000000576 INF: FPGA: Recv ZSGSRD 29314
17-03-18 01:38:32.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:32.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:32.610 -07 000000430 INF: FPGA: Recv ZSGSRD 29319
17-03-18 01:38:32.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:32.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:32.620 -07 000000430 INF: FPGA: Recv ZSGSRD 29322
17-03-18 01:38:32.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:32.630 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:38:32.630 -07 000000430 INF: FPGA: Recv ZPIEZORD 24767
17-03-18 01:38:32.640 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:32.640 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.288 V. Piezo Error = -10.0 V.
17-03-18 01:38:32.640 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29317 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29317 (-127.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29314 (-127.9 uncal um), Max = 29322 (-127.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:38:32.640 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29317, posNoise = 5, negNoise = 3
17-03-18 01:38:32.640 -07 000000610 INF: Z Motor: After move to -0.128652, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:38:32.640 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:38:32.640 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:38:32.640 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:38:32.640 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:38:32.640 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:38:32.640 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:38:32.640 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:38:32.640 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:38:32.640 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:38:32.640 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:38:32.640 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:38:32.640 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:38:32.640 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:38:32.640 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:38:32.640 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:38:32.650 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:38:32.650 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:38:32.660 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 01:38:32.660 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 01:38:32.660 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:38:32.660 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:38:32.660 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28281 150\n [Camera]
17-03-18 01:38:32.860 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:38:33.260 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:38:33.260 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:38:33.260 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:38:33.260 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:38:33.260 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:38:33.260 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:38:33.260 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:38:33.260 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:38:33.260 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:38:33.260 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:38:33.450 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28281 776
17-03-18 01:38:33.600 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:38:33.660 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:38:33.660 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:38:33.660 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:33.660 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:38:33.660 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:38:33.660 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:38:33.660 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:38:33.660 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:33.660 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:38:33.670 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:38:33.790 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:38:33.790 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:38:33.790 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:38:33.790 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:38:33.790 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 01:38:33.790 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:38:33.790 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:38:33.790 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:38:33.790 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:38:33.910 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 01:38:33.920 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 4.000345,
17-03-18 01:38:33.980 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:38:33.980 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:38:33.980 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28281 150' command took 2 ms to send, 1303 ms to get response, and 1314 ms overall
17-03-18 01:38:33.980 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.129355
17-03-18 01:38:33.980 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.12935 mm
17-03-18 01:38:33.980 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:38:33.980 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 01:38:33.980 -07 000000512 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 01:38:33.980 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:33.980 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 28258, sync = True, waitForSettling = False)
17-03-18 01:38:33.980 -07 000000447 INF: Z Motor: Moving to -0.129357 mm, started at -0.128662 mm, distance = -0.69 um
17-03-18 01:38:33.990 -07 000000447 INF: FPGA: Xmit ZDACW 28258\n [Z Motor]
17-03-18 01:38:33.990 -07 000000585 INF: FPGA: Recv YRDPOS 144770
17-03-18 01:38:33.990 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:38:33.990 -07 000000512 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:33.990 -07 000000512 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:38:33.990 -07 000000512 INF: Y Motor: Moving 1351 steps-29
17-03-18 01:38:33.990 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 01:38:34.000 -07 000000447 INF: FPGA: 'ZDACW 28258' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:38:34.000 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:38:34.000 -07 000000576 INF: FPGA: Recv ZDACR 28258
17-03-18 01:38:34.010 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:38:34.010 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:34.010 -07 000000447 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-18 01:38:34.190 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 01:38:34.190 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:38:34.190 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:34.200 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:38:34.200 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 01:38:34.310 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:38:34.310 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 519 ms.
17-03-18 01:38:34.310 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:34.310 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:38:34.320 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 530 ms.
17-03-18 01:38:34.380 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 01:38:34.380 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-18 01:38:34.430 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:34.430 -07 000000625 INF: FPGA: Recv YRDPOS 146471
17-03-18 01:38:34.440 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:38:34.440 -07 000000512 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:34.440 -07 000000512 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:38:34.440 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 01:38:35.390 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:35.390 -07 000000576 INF: FPGA: Recv YRDPOS 146471
17-03-18 01:38:35.400 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:38:35.400 -07 000000512 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:35.420 -07 000000512 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:38:35.420 -07 000000512 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:38:35.420 -07 000000512 INF: Y Motor: Moved to 71.5190 after 1440 ms (table move)
17-03-18 01:38:35.430 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129357 mm (DAC = 28258)
17-03-18 01:38:35.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:35.430 -07 000000585 INF: FPGA: Recv ZSGSRD 29424
17-03-18 01:38:35.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:35.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:35.440 -07 000000480 INF: FPGA: Recv ZSGSRD 29422
17-03-18 01:38:35.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:35.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:35.450 -07 000000430 INF: FPGA: Recv ZSGSRD 29427
17-03-18 01:38:35.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:35.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:35.460 -07 000000512 INF: FPGA: Recv ZSGSRD 29429
17-03-18 01:38:35.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:35.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:35.470 -07 000000576 INF: FPGA: Recv ZSGSRD 29433
17-03-18 01:38:35.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:35.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:35.480 -07 000000480 INF: FPGA: Recv ZSGSRD 29429
17-03-18 01:38:35.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:35.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:35.490 -07 000000447 INF: FPGA: Recv ZSGSRD 29421
17-03-18 01:38:35.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:35.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:35.500 -07 000000512 INF: FPGA: Recv ZSGSRD 29426
17-03-18 01:38:35.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:38:35.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:35.510 -07 000000625 INF: FPGA: Recv ZSGSRD 29421
17-03-18 01:38:35.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:35.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:35.520 -07 000000512 INF: FPGA: Recv ZSGSRD 29426
17-03-18 01:38:35.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:35.530 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:38:35.530 -07 000000474 INF: FPGA: Recv ZPIEZORD 24980
17-03-18 01:38:35.540 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:35.540 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.312 V. Piezo Error = -9.8 V.
17-03-18 01:38:35.540 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29426 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29426 (-128.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29421 (-128.6 uncal um), Max = 29433 (-128.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:38:35.540 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29426, posNoise = 7, negNoise = 5
17-03-18 01:38:35.540 -07 000000610 INF: Z Motor: After move to -0.129357, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:38:35.540 -07 000000610 INF: Z Motor: Settle wait time = 1442 ms, measure time = 110 ms (allowed 150 ms), total time = 1552 ms
17-03-18 01:38:35.540 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:38:35.580 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-18 01:38:35.580 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:38:35.580 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.129362218494593. ----------
17-03-18 01:38:35.580 -07 000000610 INF: Cycle	89	Tile	15	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:38:35.580 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28081, sync = True, waitForSettling = True)
17-03-18 01:38:35.580 -07 000000610 INF: Z Motor: Moving to -0.128547 mm, started at -0.129362 mm, distance = 0.82 um
17-03-18 01:38:35.590 -07 000000610 INF: FPGA: Xmit ZDACW 28081\n [Z Motor]
17-03-18 01:38:35.590 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 01:38:35.600 -07 000000610 INF: FPGA: 'ZDACW 28081' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:38:35.600 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:38:35.600 -07 000000625 INF: FPGA: Recv ZDACR 28081
17-03-18 01:38:35.610 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:35.610 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:38:35.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:35.760 -07 000000585 INF: FPGA: Recv ZSGSRD 29302
17-03-18 01:38:35.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:38:35.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:35.770 -07 000000585 INF: FPGA: Recv ZSGSRD 29300
17-03-18 01:38:35.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:35.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:35.780 -07 000000447 INF: FPGA: Recv ZSGSRD 29304
17-03-18 01:38:35.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:35.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:35.790 -07 000000585 INF: FPGA: Recv ZSGSRD 29299
17-03-18 01:38:35.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:35.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:35.800 -07 000000447 INF: FPGA: Recv ZSGSRD 29298
17-03-18 01:38:35.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:35.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:35.810 -07 000000576 INF: FPGA: Recv ZSGSRD 29301
17-03-18 01:38:35.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:35.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:35.820 -07 000000585 INF: FPGA: Recv ZSGSRD 29299
17-03-18 01:38:35.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:35.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:35.830 -07 000000576 INF: FPGA: Recv ZSGSRD 29294
17-03-18 01:38:35.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:35.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:35.840 -07 000000585 INF: FPGA: Recv ZSGSRD 29298
17-03-18 01:38:35.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:35.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:35.850 -07 000000576 INF: FPGA: Recv ZSGSRD 29303
17-03-18 01:38:35.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:35.860 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:38:35.860 -07 000000576 INF: FPGA: Recv ZPIEZORD 24794
17-03-18 01:38:35.870 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:38:35.870 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.285 V. Piezo Error = -9.9 V.
17-03-18 01:38:35.870 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29300 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29300 (-127.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29294 (-127.7 uncal um), Max = 29304 (-127.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:38:35.870 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29300, posNoise = 4, negNoise = 6
17-03-18 01:38:35.870 -07 000000610 INF: Z Motor: After move to -0.128547, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:38:35.870 -07 000000610 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-18 01:38:35.870 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:38:35.870 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:38:35.870 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:38:35.870 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:38:35.870 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:38:35.870 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:38:35.870 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:38:35.870 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:38:35.870 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:38:35.870 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:38:35.870 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:38:35.870 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:38:35.870 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:38:35.870 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:38:35.880 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:38:35.880 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:38:35.890 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:38:35.890 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:38:35.890 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 01:38:35.890 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:38:35.890 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28258 150\n [Camera]
17-03-18 01:38:36.100 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:38:36.490 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:38:36.490 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:38:36.490 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:38:36.490 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:38:36.490 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:38:36.490 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:38:36.490 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:38:36.490 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:38:36.500 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:38:36.500 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) start.
17-03-18 01:38:36.680 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28258 776
17-03-18 01:38:36.830 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:38:36.860 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) end. Duration was 368 ms.
17-03-18 01:38:36.860 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-18 01:38:36.860 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:36.870 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 01:38:36.870 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 01:38:36.870 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:36.870 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:38:36.870 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:38:36.870 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 01:38:36.880 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 01:38:37.020 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:38:37.020 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:38:37.020 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:38:37.020 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:38:37.020 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:38:37.020 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:38:37.030 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:38:37.030 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-18 01:38:37.030 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:38:37.030 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:38:37.210 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:38:37.210 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:38:37.210 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28258 150' command took 4 ms to send, 1304 ms to get response, and 1315 ms overall
17-03-18 01:38:37.210 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.128911
17-03-18 01:38:37.210 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.12891 mm
17-03-18 01:38:37.210 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:38:37.220 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 01:38:37.220 -07 000000561 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 01:38:37.220 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:37.220 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 28161, sync = True, waitForSettling = False)
17-03-18 01:38:37.220 -07 000000576 INF: Z Motor: Moving to -0.128913 mm, started at -0.128553 mm, distance = -0.36 um
17-03-18 01:38:37.220 -07 000000501 INF: FPGA: Recv YRDPOS 146471
17-03-18 01:38:37.230 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:38:37.230 -07 000000576 INF: FPGA: Xmit ZDACW 28161\n [Z Motor]
17-03-18 01:38:37.230 -07 000000561 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:37.230 -07 000000561 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:38:37.230 -07 000000561 INF: Y Motor: Moving 1350 steps-28
17-03-18 01:38:37.230 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 01:38:37.240 -07 000000576 INF: FPGA: 'ZDACW 28161' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:38:37.240 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:38:37.240 -07 000000501 INF: FPGA: Recv ZDACR 28161
17-03-18 01:38:37.250 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:37.250 -07 000000576 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-18 01:38:37.250 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:38:37.280 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:38:37.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:38:37.420 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 01:38:37.420 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 01:38:37.420 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:37.420 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 01:38:37.420 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 01:38:37.420 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:37.420 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:38:37.420 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:38:37.430 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:38:37.430 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:38:37.620 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 01:38:37.620 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:38:37.670 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:37.670 -07 000000626 INF: FPGA: Recv YRDPOS 148172
17-03-18 01:38:37.680 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:38:37.680 -07 000000561 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:37.680 -07 000000561 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 01:38:37.680 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-18 01:38:38.630 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:38.630 -07 000000438 INF: FPGA: Recv YRDPOS 148172
17-03-18 01:38:38.640 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:38:38.640 -07 000000561 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:38.660 -07 000000561 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:38:38.660 -07 000000561 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:38:38.660 -07 000000561 INF: Y Motor: Moved to 72.3496 after 1446 ms (table move)
17-03-18 01:38:38.660 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128913 mm (DAC = 28161)
17-03-18 01:38:38.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:38.670 -07 000000626 INF: FPGA: Recv ZSGSRD 29358
17-03-18 01:38:38.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:38:38.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:38.680 -07 000000626 INF: FPGA: Recv ZSGSRD 29355
17-03-18 01:38:38.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:38.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:38.690 -07 000000626 INF: FPGA: Recv ZSGSRD 29357
17-03-18 01:38:38.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:38.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:38.700 -07 000000626 INF: FPGA: Recv ZSGSRD 29358
17-03-18 01:38:38.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:38.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:38.710 -07 000000626 INF: FPGA: Recv ZSGSRD 29360
17-03-18 01:38:38.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:38.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:38.720 -07 000000626 INF: FPGA: Recv ZSGSRD 29358
17-03-18 01:38:38.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:38.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:38.730 -07 000000626 INF: FPGA: Recv ZSGSRD 29357
17-03-18 01:38:38.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:38.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:38.740 -07 000000626 INF: FPGA: Recv ZSGSRD 29353
17-03-18 01:38:38.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:38.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:38.750 -07 000000626 INF: FPGA: Recv ZSGSRD 29361
17-03-18 01:38:38.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:38.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:38.760 -07 000000626 INF: FPGA: Recv ZSGSRD 29354
17-03-18 01:38:38.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:38.770 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:38:38.770 -07 000000447 INF: FPGA: Recv ZPIEZORD 24917
17-03-18 01:38:38.780 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:38.780 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.297 V. Piezo Error = -9.7 V.
17-03-18 01:38:38.780 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29357 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29358 (-128.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29353 (-128.1 uncal um), Max = 29361 (-128.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:38:38.780 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29357, posNoise = 4, negNoise = 4
17-03-18 01:38:38.780 -07 000000610 INF: Z Motor: After move to -0.128913, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:38:38.780 -07 000000610 INF: Z Motor: Settle wait time = 1448 ms, measure time = 111 ms (allowed 150 ms), total time = 1559 ms
17-03-18 01:38:38.780 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:38:38.820 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-18 01:38:38.820 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:38:38.820 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.128918947856811. ----------
17-03-18 01:38:38.820 -07 000000610 INF: Cycle	89	Tile	16	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:38:38.820 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27984, sync = True, waitForSettling = True)
17-03-18 01:38:38.820 -07 000000610 INF: Z Motor: Moving to -0.128103 mm, started at -0.128919 mm, distance = 0.82 um
17-03-18 01:38:38.820 -07 000000610 INF: FPGA: Xmit ZDACW 27984\n [Z Motor]
17-03-18 01:38:38.820 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:38:38.830 -07 000000610 INF: FPGA: 'ZDACW 27984' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:38:38.830 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:38:38.830 -07 000000626 INF: FPGA: Recv ZDACR 27984
17-03-18 01:38:38.840 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:38.840 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:38:38.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:38.990 -07 000000626 INF: FPGA: Recv ZSGSRD 29233
17-03-18 01:38:39.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:38:39.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:39.000 -07 000000626 INF: FPGA: Recv ZSGSRD 29230
17-03-18 01:38:39.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:39.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:39.010 -07 000000618 INF: FPGA: Recv ZSGSRD 29231
17-03-18 01:38:39.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:39.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:39.020 -07 000000626 INF: FPGA: Recv ZSGSRD 29235
17-03-18 01:38:39.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:39.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:39.030 -07 000000626 INF: FPGA: Recv ZSGSRD 29232
17-03-18 01:38:39.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:39.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:39.040 -07 000000618 INF: FPGA: Recv ZSGSRD 29234
17-03-18 01:38:39.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:39.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:39.050 -07 000000626 INF: FPGA: Recv ZSGSRD 29233
17-03-18 01:38:39.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:39.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:39.060 -07 000000618 INF: FPGA: Recv ZSGSRD 29230
17-03-18 01:38:39.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:39.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:39.070 -07 000000626 INF: FPGA: Recv ZSGSRD 29235
17-03-18 01:38:39.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:39.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:39.080 -07 000000618 INF: FPGA: Recv ZSGSRD 29234
17-03-18 01:38:39.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:39.090 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:38:39.090 -07 000000618 INF: FPGA: Recv ZPIEZORD 24713
17-03-18 01:38:39.100 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:39.100 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.270 V. Piezo Error = -9.9 V.
17-03-18 01:38:39.100 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29233 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29233 (-127.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29230 (-127.3 uncal um), Max = 29235 (-127.4 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:38:39.100 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29233, posNoise = 2, negNoise = 3
17-03-18 01:38:39.100 -07 000000610 INF: Z Motor: After move to -0.128103, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:38:39.100 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 01:38:39.100 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:38:39.100 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:38:39.100 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:38:39.100 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:38:39.100 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:38:39.100 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:38:39.100 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:38:39.100 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:38:39.100 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:38:39.100 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:38:39.100 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:38:39.100 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:38:39.110 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:38:39.110 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:38:39.110 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:38:39.110 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:38:39.120 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 01:38:39.120 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:38:39.120 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 01:38:39.120 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:38:39.130 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28161 150\n [Camera]
17-03-18 01:38:39.280 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 4.008536,
17-03-18 01:38:39.330 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:38:39.720 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:38:39.720 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:38:39.720 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:38:39.730 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:38:39.730 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 01:38:40.100 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 01:38:40.100 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 01:38:40.100 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:40.110 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:38:40.110 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 01:38:40.110 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:38:40.110 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28161 776
17-03-18 01:38:40.110 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 01:38:40.120 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:38:40.120 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:38:40.120 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:38:40.120 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:38:40.490 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 01:38:40.490 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 01:38:40.610 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:40.610 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:38:40.620 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 501 ms.
17-03-18 01:38:40.630 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:38:40.630 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:38:40.630 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:38:40.630 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:38:40.630 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28161 150' command took 2 ms to send, 1492 ms to get response, and 1502 ms overall
17-03-18 01:38:40.630 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:38:40.630 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:38:40.630 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:38:40.630 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:38:40.630 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:38:40.730 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.128680
17-03-18 01:38:40.730 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.12868 mm
17-03-18 01:38:40.730 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:38:41.030 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:38:41.030 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:38:41.030 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:41.040 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:38:41.040 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:38:41.050 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:38:41.050 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:38:41.050 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) start.
17-03-18 01:38:41.450 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 01:38:41.450 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 01:38:41.450 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:41.460 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:38:41.460 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 01:38:41.470 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 01:38:41.470 -07 000000447 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-18 01:38:41.470 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:42.210 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 28110, sync = True, waitForSettling = False)
17-03-18 01:38:42.210 -07 000000455 INF: Z Motor: Moving to -0.128679 mm, started at -0.128122 mm, distance = -0.56 um
17-03-18 01:38:42.210 -07 000000455 INF: FPGA: Xmit ZDACW 28110\n [Z Motor]
17-03-18 01:38:42.710 -07 000000444 INF: FPGA: Recv YRDPOS 148173
17-03-18 01:38:42.710 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 01:38:42.710 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:38:42.710 -07 000000455 INF: FPGA: 'ZDACW 28110' command took 0 ms to send, 490 ms to get response, and 497 ms overall
17-03-18 01:38:42.710 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:38:42.710 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:38:42.710 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1230 ms to get response, and 1231 ms overall
17-03-18 01:38:42.710 -07 000000447 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:42.710 -07 000000444 INF: FPGA: Recv ZDACR 28110
17-03-18 01:38:42.710 -07 000000447 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:38:42.710 -07 000000447 INF: Y Motor: Moving 1348 steps-27
17-03-18 01:38:42.720 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:38:42.720 -07 000000455 INF: Z Motor: MoveAbsStepped took 506 ms (did NOT wait for settling yet))
17-03-18 01:38:42.730 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:38:43.100 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 01:38:43.100 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-18 01:38:43.150 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:43.150 -07 000000444 INF: FPGA: Recv YRDPOS 149865
17-03-18 01:38:43.160 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:38:43.160 -07 000000447 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:43.160 -07 000000447 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 01:38:43.160 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.843 mm, average velocity = 2.162 mm/sec
17-03-18 01:38:44.110 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:44.110 -07 000000480 INF: FPGA: Recv YRDPOS 149865
17-03-18 01:38:44.120 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:38:44.120 -07 000000447 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:44.140 -07 000000447 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:38:44.140 -07 000000447 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:38:44.140 -07 000000447 INF: Y Motor: Moved to 73.1763 after 2669 ms (table move)
17-03-18 01:38:44.150 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128679 mm (DAC = 28110)
17-03-18 01:38:44.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:44.150 -07 000000629 INF: FPGA: Recv ZSGSRD 29318
17-03-18 01:38:44.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:44.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:44.160 -07 000000444 INF: FPGA: Recv ZSGSRD 29317
17-03-18 01:38:44.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:44.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:44.170 -07 000000629 INF: FPGA: Recv ZSGSRD 29324
17-03-18 01:38:44.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:44.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:44.180 -07 000000625 INF: FPGA: Recv ZSGSRD 29322
17-03-18 01:38:44.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:44.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:44.190 -07 000000629 INF: FPGA: Recv ZSGSRD 29324
17-03-18 01:38:44.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:44.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:44.200 -07 000000625 INF: FPGA: Recv ZSGSRD 29322
17-03-18 01:38:44.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:44.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:44.210 -07 000000629 INF: FPGA: Recv ZSGSRD 29324
17-03-18 01:38:44.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:44.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:44.220 -07 000000444 INF: FPGA: Recv ZSGSRD 29316
17-03-18 01:38:44.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:44.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:44.230 -07 000000480 INF: FPGA: Recv ZSGSRD 29312
17-03-18 01:38:44.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:44.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:44.240 -07 000000444 INF: FPGA: Recv ZSGSRD 29325
17-03-18 01:38:44.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:44.250 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:38:44.250 -07 000000455 INF: FPGA: Recv ZPIEZORD 24884
17-03-18 01:38:44.260 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:44.260 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.289 V. Piezo Error = -9.7 V.
17-03-18 01:38:44.260 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29320 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29322 (-127.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29312 (-127.9 uncal um), Max = 29325 (-127.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:38:44.260 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29320, posNoise = 5, negNoise = 8
17-03-18 01:38:44.260 -07 000000610 INF: Z Motor: After move to -0.128679, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:38:44.260 -07 000000610 INF: Z Motor: Settle wait time = 1937 ms, measure time = 110 ms (allowed 150 ms), total time = 2047 ms
17-03-18 01:38:44.260 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:38:44.300 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3567 ms
17-03-18 01:38:44.300 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:38:44.300 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.128681252007566. ----------
17-03-18 01:38:44.300 -07 000000610 INF: Cycle	89	Tile	17	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:38:44.300 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27933, sync = True, waitForSettling = True)
17-03-18 01:38:44.300 -07 000000610 INF: Z Motor: Moving to -0.127869 mm, started at -0.128681 mm, distance = 0.81 um
17-03-18 01:38:44.300 -07 000000610 INF: FPGA: Xmit ZDACW 27933\n [Z Motor]
17-03-18 01:38:44.300 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 01:38:44.310 -07 000000610 INF: FPGA: 'ZDACW 27933' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:38:44.310 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:38:44.310 -07 000000474 INF: FPGA: Recv ZDACR 27933
17-03-18 01:38:44.320 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:44.320 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:38:44.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:44.470 -07 000000629 INF: FPGA: Recv ZSGSRD 29193
17-03-18 01:38:44.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:38:44.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:44.480 -07 000000474 INF: FPGA: Recv ZSGSRD 29197
17-03-18 01:38:44.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:44.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:44.490 -07 000000629 INF: FPGA: Recv ZSGSRD 29195
17-03-18 01:38:44.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:44.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:44.500 -07 000000474 INF: FPGA: Recv ZSGSRD 29200
17-03-18 01:38:44.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:44.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:44.510 -07 000000629 INF: FPGA: Recv ZSGSRD 29200
17-03-18 01:38:44.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:44.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:44.520 -07 000000474 INF: FPGA: Recv ZSGSRD 29195
17-03-18 01:38:44.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:44.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:44.530 -07 000000444 INF: FPGA: Recv ZSGSRD 29195
17-03-18 01:38:44.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:44.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:44.540 -07 000000480 INF: FPGA: Recv ZSGSRD 29191
17-03-18 01:38:44.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:44.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:44.550 -07 000000629 INF: FPGA: Recv ZSGSRD 29192
17-03-18 01:38:44.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:44.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:44.560 -07 000000447 INF: FPGA: Recv ZSGSRD 29192
17-03-18 01:38:44.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:44.570 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:38:44.570 -07 000000629 INF: FPGA: Recv ZPIEZORD 24698
17-03-18 01:38:44.580 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:44.580 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.262 V. Piezo Error = -9.9 V.
17-03-18 01:38:44.580 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29195 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29195 (-127.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29191 (-127.1 uncal um), Max = 29200 (-127.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:38:44.580 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29195, posNoise = 5, negNoise = 4
17-03-18 01:38:44.580 -07 000000610 INF: Z Motor: After move to -0.127869, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:38:44.580 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 01:38:44.580 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:38:44.580 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:38:44.580 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:38:44.580 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:38:44.580 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:38:44.580 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:38:44.580 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:38:44.580 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:38:44.580 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:38:44.580 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:38:44.580 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 4 ms.
17-03-18 01:38:44.580 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:38:44.590 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:38:44.590 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:38:44.590 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:38:44.590 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:38:44.600 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:38:44.600 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 01:38:44.600 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 01:38:44.600 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 01:38:44.600 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28110 150\n [Camera]
17-03-18 01:38:44.640 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 3.971733,
17-03-18 01:38:44.800 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:38:45.190 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:38:45.190 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:38:45.190 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:38:45.200 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:38:45.200 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:38:45.200 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:38:45.200 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:38:45.200 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) start.
17-03-18 01:38:45.200 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:38:45.200 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-18 01:38:45.600 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:38:45.600 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:38:45.600 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:45.600 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:38:45.600 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:38:45.600 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 01:38:45.600 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:38:45.600 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:45.600 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:38:45.610 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28110 776
17-03-18 01:38:45.610 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:38:45.610 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 01:38:45.720 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:38:45.720 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:38:45.730 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:38:45.730 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:38:45.730 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 01:38:45.730 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:38:45.730 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:38:45.730 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:38:45.730 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:38:45.730 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 01:38:46.130 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 407 ms.
17-03-18 01:38:46.130 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 01:38:46.130 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:46.130 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 407 ms.
17-03-18 01:38:46.140 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 01:38:46.140 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:46.140 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:38:46.140 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 01:38:46.140 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:38:46.150 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 01:38:46.150 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:38:46.150 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:38:46.150 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28110 150' command took 2 ms to send, 1543 ms to get response, and 1546 ms overall
17-03-18 01:38:46.150 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:38:46.150 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.127878225489846. ------
17-03-18 01:38:46.150 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:38:46.160 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13421 mm
17-03-18 01:38:46.160 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:38:47.210 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 01:38:47.210 -07 000000576 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 01:38:47.210 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:48.210 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:38:48.210 -07 000000618 INF: FPGA: Recv YRDPOS 149865
17-03-18 01:38:48.210 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:38:48.210 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 990 ms to get response, and 997 ms overall
17-03-18 01:38:48.210 -07 000000576 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:48.210 -07 000000576 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:38:48.210 -07 000000576 INF: Y Motor: Moving 1354 steps-33
17-03-18 01:38:48.210 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2050 ms to get response, and 2051 ms overall
17-03-18 01:38:48.210 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:38:48.210 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:38:48.210 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 29318, sync = True, waitForSettling = False)
17-03-18 01:38:48.210 -07 000000618 INF: Z Motor: Moving to -0.134209 mm, started at -0.127878 mm, distance = -6.33 um
17-03-18 01:38:48.220 -07 000000618 INF: FPGA: Xmit ZDACW 29318\n [Z Motor]
17-03-18 01:38:48.230 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:38:49.210 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:38:49.210 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:38:49.210 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 01:38:49.210 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-18 01:38:49.210 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 970 ms to get response, and 998 ms overall
17-03-18 01:38:49.210 -07 000000618 INF: FPGA: 'ZDACW 29318' command took 0 ms to send, 980 ms to get response, and 997 ms overall
17-03-18 01:38:49.230 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:38:49.230 -07 000000625 INF: FPGA: Recv ZDACR 29318
17-03-18 01:38:49.240 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 01:38:49.240 -07 000000618 INF: Z Motor: MoveAbsStepped took 1027 ms (did NOT wait for settling yet))
17-03-18 01:38:49.260 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:49.260 -07 000000438 INF: FPGA: Recv YRDPOS 151569
17-03-18 01:38:49.270 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:38:49.270 -07 000000576 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:49.270 -07 000000576 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 01:38:49.270 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 999 ms, distance = 0.846 mm, average velocity = 0.847 mm/sec
17-03-18 01:38:50.000 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 4.008536,
17-03-18 01:38:50.220 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:50.220 -07 000000626 INF: FPGA: Recv YRDPOS 151569
17-03-18 01:38:50.230 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:38:50.230 -07 000000576 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:50.250 -07 000000576 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:38:50.250 -07 000000576 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:38:50.250 -07 000000576 INF: Y Motor: Moved to 74.0083 after 3038 ms (table move)
17-03-18 01:38:50.250 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134209 mm (DAC = 29318)
17-03-18 01:38:50.250 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:50.250 -07 000000625 INF: FPGA: Recv ZSGSRD 30178
17-03-18 01:38:50.260 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:38:50.260 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:50.260 -07 000000569 INF: FPGA: Recv ZSGSRD 30179
17-03-18 01:38:50.270 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:50.270 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:50.270 -07 000000626 INF: FPGA: Recv ZSGSRD 30179
17-03-18 01:38:50.280 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:50.280 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:50.280 -07 000000438 INF: FPGA: Recv ZSGSRD 30183
17-03-18 01:38:50.290 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:50.290 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:50.290 -07 000000625 INF: FPGA: Recv ZSGSRD 30178
17-03-18 01:38:50.300 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:50.300 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:50.300 -07 000000501 INF: FPGA: Recv ZSGSRD 30184
17-03-18 01:38:50.310 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:50.310 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:50.310 -07 000000618 INF: FPGA: Recv ZSGSRD 30185
17-03-18 01:38:50.320 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:50.320 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:50.320 -07 000000576 INF: FPGA: Recv ZSGSRD 30185
17-03-18 01:38:50.330 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:50.330 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:50.330 -07 000000625 INF: FPGA: Recv ZSGSRD 30181
17-03-18 01:38:50.340 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:50.340 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:50.340 -07 000000501 INF: FPGA: Recv ZSGSRD 30182
17-03-18 01:38:50.350 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:50.350 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:38:50.350 -07 000000479 INF: FPGA: Recv ZPIEZORD 25983
17-03-18 01:38:50.360 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:50.360 -07 000000444 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.474 V. Piezo Error = -9.2 V.
17-03-18 01:38:50.360 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.2 um, Read 10 ADC samples: Avg = 30181 (-133.4 uncal um), Error = 0.8 uncal um, Median = 30182 (-133.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30178 (-133.4 uncal um), Max = 30185 (-133.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:38:50.360 -07 000000444 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30181, posNoise = 4, negNoise = 3
17-03-18 01:38:50.360 -07 000000444 INF: Z Motor: After move to -0.134209, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:38:50.360 -07 000000444 INF: Z Motor: Settle wait time = 2041 ms, measure time = 107 ms (allowed 150 ms), total time = 2148 ms
17-03-18 01:38:50.360 -07 000000444 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 01:38:50.410 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4247 ms
17-03-18 01:38:50.410 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:38:50.410 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:38:50.410 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:38:50.410 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:38:50.410 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:38:50.410 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:38:50.410 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:38:50.410 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:38:50.410 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:38:50.420 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:38:50.420 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:38:50.430 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:38:50.430 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:38:50.430 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:38:50.480 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:38:50.780 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:38:50.780 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:38:50.780 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:38:50.780 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 01:38:50.810 -07 000000576 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:38:50.820 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 01:38:50.820 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 380 ms to get response, and 385 ms overall
17-03-18 01:38:50.900 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:38:50.900 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:50.910 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:38:50.910 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:38:50.920 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:38:50.920 -07 000000625 INF: Autofocus start
17-03-18 01:38:50.920 -07 000000625 INF: MeasureProfile start
17-03-18 01:38:50.920 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:38:50.930 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:38:50.930 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:38:50.930 -07 000000625 INF: MeasureProfile done
17-03-18 01:38:50.930 -07 000000625 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:38:50.930 -07 000000625 INF: Autofocus finished
17-03-18 01:38:51.130 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:38:51.130 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:38:51.130 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.134212498661622. ----------
17-03-18 01:38:51.130 -07 000000610 INF: Cycle	89	Tile	18	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:38:51.140 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27825, sync = True, waitForSettling = True)
17-03-18 01:38:51.140 -07 000000610 INF: Z Motor: Moving to -0.127375 mm, started at -0.134212 mm, distance = 6.84 um
17-03-18 01:38:51.140 -07 000000610 INF: FPGA: Xmit ZDACW 27825\n [Z Motor]
17-03-18 01:38:51.140 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:38:51.150 -07 000000610 INF: FPGA: 'ZDACW 27825' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:51.150 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:38:51.150 -07 000000576 INF: FPGA: Recv ZDACR 27825
17-03-18 01:38:51.160 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:51.160 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:38:51.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:51.310 -07 000000625 INF: FPGA: Recv ZSGSRD 29116
17-03-18 01:38:51.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:51.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:51.320 -07 000000438 INF: FPGA: Recv ZSGSRD 29118
17-03-18 01:38:51.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:51.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:51.330 -07 000000438 INF: FPGA: Recv ZSGSRD 29120
17-03-18 01:38:51.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:51.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:51.340 -07 000000625 INF: FPGA: Recv ZSGSRD 29114
17-03-18 01:38:51.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:51.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:51.350 -07 000000625 INF: FPGA: Recv ZSGSRD 29121
17-03-18 01:38:51.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:51.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:51.360 -07 000000625 INF: FPGA: Recv ZSGSRD 29118
17-03-18 01:38:51.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:51.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:51.370 -07 000000444 INF: FPGA: Recv ZSGSRD 29118
17-03-18 01:38:51.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:38:51.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:51.380 -07 000000438 INF: FPGA: Recv ZSGSRD 29113
17-03-18 01:38:51.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:51.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:51.390 -07 000000444 INF: FPGA: Recv ZSGSRD 29117
17-03-18 01:38:51.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:51.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:51.400 -07 000000444 INF: FPGA: Recv ZSGSRD 29119
17-03-18 01:38:51.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:51.410 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:38:51.410 -07 000000625 INF: FPGA: Recv ZPIEZORD 24635
17-03-18 01:38:51.420 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:51.420 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.246 V. Piezo Error = -9.8 V.
17-03-18 01:38:51.420 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.4 um, Read 10 ADC samples: Avg = 29117 (-126.6 uncal um), Error = 0.8 uncal um, Median = 29118 (-126.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29113 (-126.6 uncal um), Max = 29121 (-126.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:38:51.420 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29117, posNoise = 4, negNoise = 4
17-03-18 01:38:51.420 -07 000000610 INF: Z Motor: After move to -0.127375, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:38:51.420 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:38:51.420 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:38:51.420 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:38:51.420 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:38:51.420 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:38:51.420 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:38:51.420 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:38:51.420 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:38:51.420 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:38:51.420 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:38:51.420 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:38:51.420 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:38:51.420 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:38:51.420 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:38:51.430 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:38:51.430 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:38:51.430 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:38:51.430 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:38:51.430 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:38:51.440 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:38:51.440 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:38:51.440 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28002 150\n [Camera]
17-03-18 01:38:51.640 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:38:52.030 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:38:52.030 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:38:52.030 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:38:52.030 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:38:52.030 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:38:52.030 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:38:52.040 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:38:52.040 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) start.
17-03-18 01:38:52.040 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:38:52.040 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-18 01:38:52.220 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28002 776
17-03-18 01:38:52.280 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:38:52.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 88. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:38:52.370 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:38:52.420 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1422920864, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 01:38:52.420 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 01:38:52.420 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:52.420 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 01:38:52.420 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 01:38:52.420 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:52.420 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:38:52.420 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 01:38:52.420 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:38:52.430 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:38:52.560 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:38:52.560 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:38:52.560 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:38:52.570 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:38:52.570 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:38:52.570 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:38:52.570 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:38:52.570 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:38:52.690 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:38:52.690 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) start.
17-03-18 01:38:52.750 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:38:52.750 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:38:52.750 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28002 150' command took 2 ms to send, 1307 ms to get response, and 1314 ms overall
17-03-18 01:38:52.750 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.127330
17-03-18 01:38:52.750 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.12733 mm
17-03-18 01:38:52.760 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:38:52.760 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 01:38:52.760 -07 000000479 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 01:38:52.760 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:52.760 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 27815, sync = True, waitForSettling = False)
17-03-18 01:38:52.760 -07 000000501 INF: Z Motor: Moving to -0.127329 mm, started at -0.127377 mm, distance = 0.05 um
17-03-18 01:38:52.770 -07 000000501 INF: FPGA: Xmit ZDACW 27815\n [Z Motor]
17-03-18 01:38:52.970 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 01:38:52.970 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:38:52.970 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:52.970 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:38:52.970 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 01:38:52.980 -07 000000626 INF: FPGA: Recv YRDPOS 151569
17-03-18 01:38:52.980 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:38:52.980 -07 000000501 INF: FPGA: 'ZDACW 27815' command took 0 ms to send, 208 ms to get response, and 224 ms overall
17-03-18 01:38:52.980 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:38:52.980 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 218 ms to get response, and 225 ms overall
17-03-18 01:38:52.980 -07 000000479 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:52.980 -07 000000479 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:38:52.980 -07 000000479 INF: Y Motor: Moving 1351 steps-29
17-03-18 01:38:52.990 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:38:52.990 -07 000000626 INF: FPGA: Recv ZDACR 27815
17-03-18 01:38:52.990 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:38:52.990 -07 000000501 INF: Z Motor: MoveAbsStepped took 228 ms (did NOT wait for settling yet))
17-03-18 01:38:53.090 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:38:53.090 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:38:53.090 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:53.090 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:38:53.100 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 530 ms.
17-03-18 01:38:53.360 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 01:38:53.360 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 01:38:53.390 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:53.390 -07 000000626 INF: FPGA: Recv YRDPOS 153255
17-03-18 01:38:53.400 -07 000000479 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:38:53.400 -07 000000479 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:53.400 -07 000000479 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-18 01:38:53.400 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.844 mm, average velocity = 2.234 mm/sec
17-03-18 01:38:54.350 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:54.350 -07 000000576 INF: FPGA: Recv YRDPOS 153256
17-03-18 01:38:54.360 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:54.360 -07 000000479 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:54.370 -07 000000479 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:38:54.370 -07 000000479 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:38:54.370 -07 000000479 INF: Y Motor: Moved to 74.8320 after 1615 ms (table move)
17-03-18 01:38:54.380 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.127329 mm (DAC = 27815)
17-03-18 01:38:54.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:54.380 -07 000000576 INF: FPGA: Recv ZSGSRD 29106
17-03-18 01:38:54.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:54.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:54.390 -07 000000501 INF: FPGA: Recv ZSGSRD 29111
17-03-18 01:38:54.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:54.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:54.400 -07 000000479 INF: FPGA: Recv ZSGSRD 29106
17-03-18 01:38:54.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:54.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:54.410 -07 000000501 INF: FPGA: Recv ZSGSRD 29103
17-03-18 01:38:54.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:54.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:54.420 -07 000000626 INF: FPGA: Recv ZSGSRD 29107
17-03-18 01:38:54.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:54.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:54.430 -07 000000576 INF: FPGA: Recv ZSGSRD 29113
17-03-18 01:38:54.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:54.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:54.440 -07 000000626 INF: FPGA: Recv ZSGSRD 29111
17-03-18 01:38:54.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:54.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:54.450 -07 000000576 INF: FPGA: Recv ZSGSRD 29113
17-03-18 01:38:54.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:54.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:54.460 -07 000000501 INF: FPGA: Recv ZSGSRD 29115
17-03-18 01:38:54.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:54.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:54.470 -07 000000576 INF: FPGA: Recv ZSGSRD 29113
17-03-18 01:38:54.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:54.480 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:38:54.480 -07 000000479 INF: FPGA: Recv ZPIEZORD 24605
17-03-18 01:38:54.490 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:54.490 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.244 V. Piezo Error = -9.9 V.
17-03-18 01:38:54.490 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.3 um, Read 10 ADC samples: Avg = 29110 (-126.6 uncal um), Error = 0.8 uncal um, Median = 29111 (-126.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29103 (-126.5 uncal um), Max = 29115 (-126.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:38:54.490 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29110, posNoise = 5, negNoise = 7
17-03-18 01:38:54.490 -07 000000610 INF: Z Motor: After move to -0.127329, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:38:54.490 -07 000000610 INF: Z Motor: Settle wait time = 1617 ms, measure time = 109 ms (allowed 150 ms), total time = 1726 ms
17-03-18 01:38:54.490 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:38:54.540 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1780 ms
17-03-18 01:38:54.540 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:38:54.540 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.127332167457796. ----------
17-03-18 01:38:54.540 -07 000000610 INF: Cycle	89	Tile	19	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:38:54.540 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27639, sync = True, waitForSettling = True)
17-03-18 01:38:54.540 -07 000000610 INF: Z Motor: Moving to -0.126523 mm, started at -0.127332 mm, distance = 0.81 um
17-03-18 01:38:54.540 -07 000000610 INF: FPGA: Xmit ZDACW 27639\n [Z Motor]
17-03-18 01:38:54.540 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 01:38:54.550 -07 000000610 INF: FPGA: 'ZDACW 27639' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:38:54.550 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:38:54.550 -07 000000479 INF: FPGA: Recv ZDACR 27639
17-03-18 01:38:54.560 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:54.560 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:38:54.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:54.710 -07 000000576 INF: FPGA: Recv ZSGSRD 28986
17-03-18 01:38:54.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:54.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:54.720 -07 000000501 INF: FPGA: Recv ZSGSRD 28991
17-03-18 01:38:54.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:54.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:54.730 -07 000000629 INF: FPGA: Recv ZSGSRD 28982
17-03-18 01:38:54.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:54.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:54.740 -07 000000576 INF: FPGA: Recv ZSGSRD 28984
17-03-18 01:38:54.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:54.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:54.750 -07 000000501 INF: FPGA: Recv ZSGSRD 28989
17-03-18 01:38:54.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:54.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:54.760 -07 000000576 INF: FPGA: Recv ZSGSRD 28986
17-03-18 01:38:54.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:54.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:54.770 -07 000000501 INF: FPGA: Recv ZSGSRD 28986
17-03-18 01:38:54.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:54.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:54.780 -07 000000576 INF: FPGA: Recv ZSGSRD 28982
17-03-18 01:38:54.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:54.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:54.790 -07 000000501 INF: FPGA: Recv ZSGSRD 28988
17-03-18 01:38:54.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:54.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:38:54.800 -07 000000576 INF: FPGA: Recv ZSGSRD 28981
17-03-18 01:38:54.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:54.810 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:38:54.810 -07 000000501 INF: FPGA: Recv ZPIEZORD 24496
17-03-18 01:38:54.820 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:54.820 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.217 V. Piezo Error = -9.8 V.
17-03-18 01:38:54.820 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.5 um, Read 10 ADC samples: Avg = 28986 (-125.8 uncal um), Error = 0.8 uncal um, Median = 28986 (-125.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 28981 (-125.7 uncal um), Max = 28991 (-125.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:38:54.820 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28986, posNoise = 5, negNoise = 5
17-03-18 01:38:54.820 -07 000000610 INF: Z Motor: After move to -0.126523, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:38:54.820 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 01:38:54.820 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:38:54.820 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:38:54.820 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:38:54.820 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:38:54.820 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:38:54.820 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:38:54.820 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:38:54.820 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:38:54.820 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:38:54.820 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:38:54.820 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:38:54.820 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:38:54.830 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:38:54.830 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:38:54.830 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:38:54.830 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:38:54.840 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:38:54.840 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:38:54.840 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:38:54.840 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:38:54.840 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 27815 150\n [Camera]
17-03-18 01:38:55.050 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:38:55.360 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 3.999021,
17-03-18 01:38:55.430 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:38:55.440 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:38:55.440 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:38:55.440 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:38:55.440 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-18 01:38:55.440 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:38:55.440 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:38:55.440 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:38:55.440 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:38:55.440 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) start.
17-03-18 01:38:55.630 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27815 776
17-03-18 01:38:55.780 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:38:55.840 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 01:38:55.840 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:38:55.840 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:55.840 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 01:38:55.840 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:38:55.840 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:55.840 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:38:55.840 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:38:55.850 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:38:55.850 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:38:55.970 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:38:55.970 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:38:55.970 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:38:55.970 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:38:55.970 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 01:38:55.970 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:38:55.970 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:38:55.970 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:38:55.970 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:38:55.970 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 01:38:56.160 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:38:56.160 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:38:56.160 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 27815 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-18 01:38:56.360 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 01:38:56.360 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 01:38:56.360 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:56.370 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:38:56.370 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:38:56.370 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:38:56.370 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:38:56.370 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:38:56.370 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:38:56.370 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 01:38:56.370 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:38:56.410 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 01:38:56.410 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 01:38:56.460 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 01:38:56.470 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-18 01:38:56.470 -07 000000610 INF: Imaging Cycle 89: ScanTilesCommand Cycle 89 time end. Duration was 152551 ms.
17-03-18 01:38:56.470 -07 000000610 INF: =================== Cycle #89 ===================
17-03-18 01:38:56.470 -07 000000610 INF: ===================  ===================
17-03-18 01:38:56.470 -07 000000626 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 01:38:56.470 -07 000000501 INF: FPGA: Recv EXLED1ADCR 25
17-03-18 01:38:56.480 -07 000000626 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:38:56.480 -07 000000626 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW
17-03-18 01:38:56.480 -07 000000626 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 89, FrontChillerTemperature: 3.999021, FrontChillerHeatSinkTemperature: 0.43846, AmbientTemperature: 18.76855, FlowCellCompartmentTemperature: 21.99692, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.61752, GreenLEDSensorTemperature: 25.05258, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864
17-03-18 01:38:56.550 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.