17-03-17 17:59:13.058 -07 000000610 INF: =================== Cycle #8 ===================
17-03-17 17:59:13.068 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 17:59:13.068 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 17:59:13.068 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:59:13.068 -07 000000459 INF: FPGA: Recv YRDPOS 153258
17-03-17 17:59:13.078 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:13.078 -07 000000610 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:59:13.078 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 17:59:13.078 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 17:59:13.078 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 17:59:13.108 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 3.99219,
17-03-17 17:59:13.188 -07 000000486 INF: FPGA: Recv YMVTO 154377 870
17-03-17 17:59:13.188 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 108 ms to get response, and 116 ms overall
17-03-17 17:59:13.188 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 17:59:13.188 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 876 steps, but required 870 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 17:59:13.188 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.725 mm/sec
17-03-17 17:59:16.188 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:59:16.188 -07 000000551 INF: FPGA: Recv YRDPOS 154379
17-03-17 17:59:16.198 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:59:16.198 -07 000000610 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:59:16.208 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:59:16.208 -07 000000610 INF: Y Motor: Position error after settling = 0 encoder counts (0.000 mm), Delta during settling = 2 counts (0.001 mm)
17-03-17 17:59:16.208 -07 000000610 INF: Y Motor: Moved to 75.3804 after 3144 ms
17-03-17 17:59:16.218 -07 000000610 INF: =================== Cycle #8, Flow Cell Temp 60° ===================
17-03-17 17:59:16.218 -07 000000610 INF: =================== Cycle #8, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 17:59:16.218 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 17:59:16.218 -07 000000480 INF: FPGA: Recv TEC2TEMP 
17-03-17 17:59:16.228 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:59:16.228 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 17:59:16.228 -07 000000482 INF: FPGA: Recv TEC2EN 
17-03-17 17:59:16.238 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:16.238 -07 000000610 INF: =================== Cycle #8, Flow Cell Temp 60° ===================
17-03-17 17:59:16.238 -07 000000610 INF: =================== Cycle #8 ===================
17-03-17 17:59:16.238 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 17:59:16.238 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:59:16.268 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 17:59:16.268 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 17:59:16.268 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 17:59:16.548 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:59:16.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=66, R2=74, Total=140. Warn if over 250 bubbles per interval.
17-03-17 17:59:16.568 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:59:16.588 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 17:59:16.588 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 17:59:16.638 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:59:16.658 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:59:16.658 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:59:16.758 -07 000000610 INF: =================== Cycle #8, Pumping Reagent PR2 (3) ===================
17-03-17 17:59:16.758 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 17:59:16.758 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:59:16.788 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 17:59:16.788 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 17:59:16.788 -07 000000610 INF: =================== Cycle #8, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:59:16.918 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 17:59:16.958 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:59:18.468 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 3.952638,
17-03-17 17:59:20.088 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:59:20.118 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:59:20.538 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:59:20.568 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:59:20.988 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:59:21.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:59:21.018 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 17:59:21.018 -07 000000610 INF: =================== Cycle #8, Pumping Reagent PR2 (3) ===================
17-03-17 17:59:21.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:59:21.178 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:59:21.178 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:59:21.308 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:59:21.338 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:59:21.338 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:59:21.338 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:59:21.468 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:59:21.498 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:59:21.548 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 17:59:21.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=67, R2=75, Total=142. Warn if over 250 bubbles per interval.
17-03-17 17:59:21.928 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:59:21.958 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:59:21.958 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:59:21.958 -07 000000610 INF: =================== Cycle #8 ===================
17-03-17 17:59:23.178 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 17:59:23.178 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 17:59:23.178 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:59:23.198 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:59:23.198 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 17:59:23.198 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 17:59:23.338 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:59:23.358 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 17:59:23.358 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 17:59:23.408 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:59:23.428 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 17:59:23.428 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:59:23.528 -07 000000610 INF: =================== Cycle #8, Pumping Reagent CMS (4) ===================
17-03-17 17:59:23.528 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 17:59:23.528 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:59:23.558 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:59:23.558 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:59:23.558 -07 000000610 INF: =================== Cycle #8, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 17:59:23.688 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 17:59:23.728 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:59:23.828 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 3.973092,
17-03-17 17:59:25.168 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:59:25.198 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:59:25.618 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:59:25.648 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:59:25.648 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 17:59:25.648 -07 000000610 INF: =================== Cycle #8, Pumping Reagent CMS (4) ===================
17-03-17 17:59:25.778 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:59:25.808 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:59:25.808 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:59:25.938 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:59:25.968 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:59:25.968 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:59:25.968 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:59:26.098 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:59:26.128 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:59:26.548 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:59:26.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=67, R2=75, Total=142. Warn if over 250 bubbles per interval.
17-03-17 17:59:26.558 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:59:26.588 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:59:26.588 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:59:26.588 -07 000000610 INF: =================== Cycle #8 ===================
17-03-17 17:59:27.808 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 17:59:27.808 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 17:59:27.808 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:59:27.828 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 17:59:27.828 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 17:59:27.828 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 17:59:27.978 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:59:27.998 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 17:59:27.998 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 17:59:28.048 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:59:28.068 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:59:28.068 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:59:28.168 -07 000000610 INF: =================== Cycle #8, Pumping Reagent PR2 (3) ===================
17-03-17 17:59:28.168 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 17:59:28.168 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:59:28.198 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:59:28.198 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:59:28.198 -07 000000610 INF: =================== Cycle #8, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:59:28.328 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 17:59:28.368 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:59:29.238 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:59:29.268 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:59:29.268 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 17:59:29.268 -07 000000610 INF: =================== Cycle #8, Pumping Reagent PR2 (3) ===================
17-03-17 17:59:29.288 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 4.015368,
17-03-17 17:59:29.398 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:59:29.428 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:59:29.428 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:59:29.558 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:59:29.588 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:59:29.588 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:59:29.588 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:59:29.718 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:59:29.748 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:59:30.178 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:59:30.208 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:59:30.208 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:59:30.208 -07 000000610 INF: =================== Cycle #8 ===================
17-03-17 17:59:30.208 -07 000000501 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:59:30.208 -07 000000593 INF: WaitCommand(10000) start
17-03-17 17:59:30.208 -07 000000501 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 17:59:31.428 -07 000000501 INF: AsyncDelayTimer waited 1215ms
17-03-17 17:59:31.428 -07 000000501 INF: LanePump: Xmit /1?\r
17-03-17 17:59:31.458 -07 000000501 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:59:31.458 -07 000000501 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:59:31.548 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:59:31.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=67, R2=75, Total=142. Warn if over 250 bubbles per interval.
17-03-17 17:59:31.588 -07 000000501 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 17:59:31.628 -07 000000501 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:59:33.158 -07 000000501 INF: LanePump: Xmit /1Q\r
17-03-17 17:59:33.188 -07 000000501 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:59:33.608 -07 000000501 INF: LanePump: Xmit /1Q\r
17-03-17 17:59:33.638 -07 000000501 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:59:33.638 -07 000000501 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 17:59:33.638 -07 000000501 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:59:33.638 -07 000000501 INF: ===================  ===================
17-03-17 17:59:34.648 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 3.985358,
17-03-17 17:59:36.548 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:59:36.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=67, R2=75, Total=142. Warn if over 250 bubbles per interval.
17-03-17 17:59:40.008 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 4.011254,
17-03-17 17:59:40.218 -07 000000593 INF: WaitCommand(10000) end
17-03-17 17:59:40.218 -07 000000610 INF: =================== Cycle #8, Pumping Reagent PR2 (3) ===================
17-03-17 17:59:40.218 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 17:59:40.218 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:59:40.248 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 17:59:40.248 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 17:59:40.248 -07 000000610 INF: =================== Cycle #8, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:59:40.378 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 17:59:40.418 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:59:41.548 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:59:41.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=67, R2=75, Total=142. Warn if over 250 bubbles per interval.
17-03-17 17:59:45.368 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 4.02213,
17-03-17 17:59:46.548 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:59:46.548 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:59:46.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=67, R2=75, Total=142. Warn if over 250 bubbles per interval.
17-03-17 17:59:46.578 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:59:46.998 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:59:47.028 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:59:47.448 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:59:47.478 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:59:47.898 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:59:47.928 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:59:48.348 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:59:48.378 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:59:48.378 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 17:59:48.378 -07 000000610 INF: =================== Cycle #8, Pumping Reagent PR2 (3) ===================
17-03-17 17:59:48.508 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:59:48.538 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 17:59:48.538 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 17:59:48.668 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:59:48.698 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 17:59:48.698 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 17:59:48.698 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:59:48.828 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:59:48.858 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:59:49.288 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:59:49.318 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:59:49.318 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 17:59:49.318 -07 000000610 INF: =================== Cycle #8 ===================
17-03-17 17:59:50.538 -07 000000610 INF: AsyncDelayTimer waited 1213ms
17-03-17 17:59:50.538 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 17:59:50.538 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:59:50.558 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:59:50.558 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 17:59:50.558 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 17:59:50.728 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 4.009895,
17-03-17 17:59:50.768 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:59:50.788 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 17:59:50.788 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 17:59:50.838 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:59:50.858 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 17:59:50.858 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:59:50.958 -07 000000610 INF: =================== Cycle #8, Pumping Reagent IMT (1) ===================
17-03-17 17:59:50.958 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 17:59:50.958 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:59:50.988 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 17:59:50.988 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 17:59:50.988 -07 000000610 INF: =================== Cycle #8, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 17:59:51.118 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 17:59:51.158 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:59:51.548 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:59:51.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=67, R2=75, Total=142. Warn if over 250 bubbles per interval.
17-03-17 17:59:52.598 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:59:52.628 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:59:53.048 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:59:53.078 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:59:53.078 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 17:59:53.078 -07 000000610 INF: =================== Cycle #8, Pumping Reagent IMT (1) ===================
17-03-17 17:59:53.208 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:59:53.238 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 17:59:53.238 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 17:59:53.368 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:59:53.398 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 17:59:53.398 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 17:59:53.398 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:59:53.528 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:59:53.558 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:59:53.988 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:59:54.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:59:54.018 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:59:54.018 -07 000000610 INF: =================== Cycle #8 ===================
17-03-17 17:59:55.238 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 17:59:55.238 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 17:59:55.238 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:59:55.258 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 17:59:55.258 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 17:59:55.258 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 17:59:55.488 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:59:55.508 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 17:59:55.508 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 17:59:55.558 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:59:55.578 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:59:55.578 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:59:55.678 -07 000000610 INF: =================== Cycle #8, Pumping Reagent PR2 (3) ===================
17-03-17 17:59:55.678 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 17:59:55.678 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:59:55.708 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 17:59:55.708 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 17:59:55.708 -07 000000610 INF: =================== Cycle #8, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:59:55.838 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 17:59:55.878 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:59:56.088 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 4.02213,
17-03-17 17:59:56.548 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:59:56.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=67, R2=75, Total=142. Warn if over 250 bubbles per interval.
17-03-17 17:59:56.748 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:59:56.778 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:59:56.778 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 17:59:56.778 -07 000000610 INF: =================== Cycle #8, Pumping Reagent PR2 (3) ===================
17-03-17 17:59:56.908 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:59:56.938 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 17:59:56.938 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 17:59:57.068 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:59:57.098 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 17:59:57.098 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 17:59:57.098 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:59:57.228 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:59:57.258 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:59:57.688 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:59:57.718 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:59:57.718 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:59:57.718 -07 000000610 INF: =================== Cycle #8 ===================
17-03-17 17:59:57.718 -07 000000610 INF: =================== Cycle #8, Flow Cell Temp 65° ===================
17-03-17 17:59:57.718 -07 000000610 INF: =================== Cycle #8, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 17:59:57.718 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 17:59:57.718 -07 000000478 INF: FPGA: Recv TEC2TEMP 
17-03-17 17:59:57.728 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:59:57.728 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 17:59:57.728 -07 000000409 INF: FPGA: Recv TEC2EN 
17-03-17 17:59:57.738 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:59:57.738 -07 000000610 INF: =================== Cycle #8, Flow Cell Temp 65° ===================
17-03-17 17:59:57.738 -07 000000610 INF: =================== Cycle #8 ===================
17-03-17 17:59:57.738 -07 000000610 INF: WaitCommand(30000) start
17-03-17 18:00:01.448 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 4.031682,
17-03-17 18:00:01.548 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 18:00:01.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=68, R2=75, Total=143. Warn if over 250 bubbles per interval.
17-03-17 18:00:06.548 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:00:06.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=68, R2=75, Total=143. Warn if over 250 bubbles per interval.
17-03-17 18:00:06.808 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 3.978563,
17-03-17 18:00:11.548 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 18:00:11.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=68, R2=76, Total=144. Warn if over 250 bubbles per interval.
17-03-17 18:00:12.168 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 3.983999,
17-03-17 18:00:16.548 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:00:16.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=68, R2=76, Total=144. Warn if over 250 bubbles per interval.
17-03-17 18:00:17.528 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 4.014009,
17-03-17 18:00:21.548 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:00:21.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=68, R2=76, Total=144. Warn if over 250 bubbles per interval.
17-03-17 18:00:22.888 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 4.004458,
17-03-17 18:00:26.548 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:00:26.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=68, R2=76, Total=144. Warn if over 250 bubbles per interval.
17-03-17 18:00:27.748 -07 000000610 INF: WaitCommand(30000) end
17-03-17 18:00:27.748 -07 000000610 INF: =================== Cycle #8, Pumping Reagent PR2 (3) ===================
17-03-17 18:00:27.748 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 18:00:27.848 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:00:27.878 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:00:27.878 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:00:27.878 -07 000000610 INF: =================== Cycle #8, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:00:28.008 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 18:00:28.048 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:00:28.248 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 4.015368,
17-03-17 18:00:28.588 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:00:28.618 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:00:28.618 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 18:00:28.618 -07 000000610 INF: =================== Cycle #8, Pumping Reagent PR2 (3) ===================
17-03-17 18:00:28.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:00:28.778 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:00:28.778 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:00:28.908 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:00:28.938 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:00:28.938 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:00:28.938 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:00:29.068 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:00:29.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:00:29.528 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:00:29.558 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:00:29.558 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:00:29.558 -07 000000610 INF: =================== Cycle #8 ===================
17-03-17 18:00:29.558 -07 000000433 INF: WaitCommand(30000) start
17-03-17 18:00:29.558 -07 000000627 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:00:29.558 -07 000000627 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:00:30.778 -07 000000627 INF: AsyncDelayTimer waited 1215ms
17-03-17 18:00:30.778 -07 000000627 INF: LanePump: Xmit /1?\r
17-03-17 18:00:30.808 -07 000000627 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:00:30.808 -07 000000627 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:00:30.938 -07 000000627 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:00:30.978 -07 000000627 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:00:31.548 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:00:31.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=68, R2=76, Total=144. Warn if over 250 bubbles per interval.
17-03-17 18:00:33.318 -07 000000627 INF: LanePump: Xmit /1Q\r
17-03-17 18:00:33.348 -07 000000627 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:00:33.608 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 4.03576,
17-03-17 18:00:33.768 -07 000000627 INF: LanePump: Xmit /1Q\r
17-03-17 18:00:33.798 -07 000000627 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:00:33.798 -07 000000627 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 18:00:33.798 -07 000000627 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:00:33.798 -07 000000627 INF: ===================  ===================
17-03-17 18:00:36.558 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:00:36.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=68, R2=76, Total=144. Warn if over 250 bubbles per interval.
17-03-17 18:00:38.968 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 4.031682,
17-03-17 18:00:41.548 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:00:41.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=68, R2=76, Total=144. Warn if over 250 bubbles per interval.
17-03-17 18:00:44.328 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 4.033041,
17-03-17 18:00:46.548 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:00:46.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=68, R2=76, Total=144. Warn if over 250 bubbles per interval.
17-03-17 18:00:49.688 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 3.990831,
17-03-17 18:00:51.548 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:00:51.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=68, R2=76, Total=144. Warn if over 250 bubbles per interval.
17-03-17 18:00:55.048 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 3.98264,
17-03-17 18:00:56.548 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:00:56.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=68, R2=76, Total=144. Warn if over 250 bubbles per interval.
17-03-17 18:00:59.568 -07 000000433 INF: WaitCommand(30000) end
17-03-17 18:00:59.568 -07 000000610 INF: =================== Cycle #8, Flow Cell Temp 22° ===================
17-03-17 18:00:59.568 -07 000000610 INF: =================== Cycle #8, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 18:00:59.568 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 18:00:59.578 -07 000000551 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:00:59.578 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 3 ms to get response, and 5 ms overall
17-03-17 18:00:59.578 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:00:59.578 -07 000000458 INF: FPGA: Recv TEC2EN 
17-03-17 18:00:59.588 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:00:59.588 -07 000000610 INF: =================== Cycle #8, Flow Cell Temp 22° ===================
17-03-17 18:00:59.588 -07 000000610 INF: =================== Cycle #8 ===================
17-03-17 18:00:59.588 -07 000000610 INF: =================== Cycle #8, Pumping Reagent PR2 (3) ===================
17-03-17 18:00:59.588 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 18:00:59.588 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:00:59.628 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:00:59.628 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:00:59.628 -07 000000610 INF: =================== Cycle #8, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:00:59.758 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 18:00:59.798 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:01:00.408 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 3.990831,
17-03-17 18:01:01.548 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:01:01.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=68, R2=76, Total=144. Warn if over 250 bubbles per interval.
17-03-17 18:01:02.928 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:01:02.958 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:01:03.378 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:01:03.408 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:01:03.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:01:03.858 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:01:03.858 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 18:01:03.858 -07 000000610 INF: =================== Cycle #8, Pumping Reagent PR2 (3) ===================
17-03-17 18:01:03.988 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:01:04.018 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:01:04.018 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:01:04.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:01:04.178 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:01:04.178 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:01:04.178 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:01:04.308 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:01:04.338 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:01:04.768 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:01:04.798 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:01:04.798 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:01:04.798 -07 000000610 INF: =================== Cycle #8 ===================
17-03-17 18:01:05.768 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 3.997626,
17-03-17 18:01:06.018 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:01:06.018 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 18:01:06.018 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:01:06.038 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:01:06.038 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 18:01:06.038 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 18:01:06.188 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:01:06.208 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 18:01:06.208 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 18:01:06.258 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:01:06.278 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 18:01:06.278 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:01:06.378 -07 000000610 INF: =================== Cycle #8, Pumping Reagent USM (2) ===================
17-03-17 18:01:06.378 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:01:06.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:01:06.408 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:01:06.408 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:01:06.408 -07 000000610 INF: =================== Cycle #8, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 18:01:06.538 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:01:06.548 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-17 18:01:06.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=78, Total=148. Warn if over 250 bubbles per interval.
17-03-17 18:01:06.578 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:01:08.018 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:01:08.048 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:01:08.468 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:01:08.498 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:01:08.498 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 18:01:08.498 -07 000000610 INF: =================== Cycle #8, Pumping Reagent USM (2) ===================
17-03-17 18:01:08.628 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:01:08.658 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:01:08.658 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:01:08.788 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:01:08.818 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:01:08.818 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:01:08.818 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:01:08.948 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:01:08.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:01:09.408 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:01:09.438 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:01:09.438 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:01:09.438 -07 000000610 INF: =================== Cycle #8 ===================
17-03-17 18:01:10.658 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 18:01:10.658 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:01:10.658 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:01:10.678 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 18:01:10.678 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 18:01:10.678 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:01:10.828 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:01:10.848 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 18:01:10.848 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 18:01:10.898 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:01:10.918 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:01:10.918 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:01:11.018 -07 000000610 INF: =================== Cycle #8, Pumping Reagent PR2 (3) ===================
17-03-17 18:01:11.018 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:01:11.018 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:01:11.048 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:01:11.048 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:01:11.048 -07 000000610 INF: =================== Cycle #8, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:01:11.128 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 4.008536,
17-03-17 18:01:11.178 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:01:11.218 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:01:11.548 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 18:01:11.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:01:12.088 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:01:12.118 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:01:12.118 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 18:01:12.118 -07 000000610 INF: =================== Cycle #8, Pumping Reagent PR2 (3) ===================
17-03-17 18:01:12.248 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:01:12.278 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:01:12.278 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:01:12.408 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:01:12.438 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:01:12.438 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:01:12.438 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:01:12.568 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:01:12.598 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:01:13.028 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:01:13.058 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:01:13.058 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:01:13.058 -07 000000610 INF: =================== Cycle #8 ===================
17-03-17 18:01:13.058 -07 000000433 INF: WaitCommand(10000) start
17-03-17 18:01:13.058 -07 000000480 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:01:13.058 -07 000000480 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:01:14.278 -07 000000480 INF: AsyncDelayTimer waited 1214ms
17-03-17 18:01:14.278 -07 000000480 INF: LanePump: Xmit /1?\r
17-03-17 18:01:14.308 -07 000000480 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:01:14.308 -07 000000480 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:01:14.438 -07 000000480 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:01:14.478 -07 000000480 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:01:16.008 -07 000000480 INF: LanePump: Xmit /1Q\r
17-03-17 18:01:16.038 -07 000000480 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:01:16.458 -07 000000480 INF: LanePump: Xmit /1Q\r
17-03-17 18:01:16.488 -07 000000480 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:01:16.488 -07 000000480 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 18:01:16.488 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 4.005817,
17-03-17 18:01:16.488 -07 000000480 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:01:16.488 -07 000000480 INF: ===================  ===================
17-03-17 18:01:16.548 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:01:16.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:01:21.548 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:01:21.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:01:21.848 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 3.996267,
17-03-17 18:01:23.068 -07 000000433 INF: WaitCommand(10000) end
17-03-17 18:01:23.068 -07 000000610 INF: =================== Cycle #8, Imaging ===================
17-03-17 18:01:23.068 -07 000000610 INF: Imaging Cycle 8: ScanTilesCommand Cycle 8 time start.
17-03-17 18:01:23.078 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 18:01:23.078 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:01:23.098 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:01:23.098 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 18:01:23.098 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 18:01:23.398 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:01:23.418 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 18:01:23.418 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 18:01:23.468 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:01:23.488 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 18:01:23.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:01:23.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:01:23.488 -07 000000480 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 18:01:23.488 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:01:23.488 -07 000000480 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 18:01:23.498 -07 000000458 INF: FPGA: Recv EXLED1ON 
17-03-17 18:01:23.498 -07 000000480 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:01:23.498 -07 000000480 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 18:01:23.498 -07 000000433 INF: FPGA: Recv EXLED1ADCR 23182
17-03-17 18:01:23.508 -07 000000480 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:23.508 -07 000000480 INF: RedLED: Using Red data: Photodiode ADC 23182 --> 7.4 mW (old method), or 205.5 mW (new method). Difference = 198.0 mW
17-03-17 18:01:23.508 -07 000000480 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 18:01:23.508 -07 000000486 INF: FPGA: Recv EXLED1OFF 
17-03-17 18:01:23.518 -07 000000480 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:23.518 -07 000000480 INF: RedLED: LED was on for 19 ms
17-03-17 18:01:23.548 -07 000000480 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 57 ms.
17-03-17 18:01:23.548 -07 000000480 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 18:01:23.548 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:01:23.548 -07 000000480 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 18:01:23.548 -07 000000576 INF: FPGA: Recv EXLED2ON 
17-03-17 18:01:23.558 -07 000000480 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:01:23.558 -07 000000480 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 18:01:23.558 -07 000000409 INF: FPGA: Recv EXLED1ADCR 2109
17-03-17 18:01:23.568 -07 000000480 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:23.568 -07 000000480 INF: GreenLED: Using Green data: Photodiode ADC 2109 --> 0.9 mW (old method), or 183.2 mW (new method). Difference = 182.2 mW
17-03-17 18:01:23.568 -07 000000480 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 18:01:23.568 -07 000000409 INF: FPGA: Recv EXLED2OFF 
17-03-17 18:01:23.578 -07 000000480 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:23.578 -07 000000480 INF: GreenLED: LED was on for 19 ms
17-03-17 18:01:23.608 -07 000000480 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 54 ms.
17-03-17 18:01:23.608 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 18:01:23.608 -07 000000486 INF: FPGA: Recv EMCUR 
17-03-17 18:01:23.618 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:01:23.618 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 18:01:24.118 -07 000000551 INF: FPGA: Recv EMOUT
17-03-17 18:01:24.118 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 18:01:24.118 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 18:01:24.118 -07 000000480 INF: FPGA: Recv EMCUR 
17-03-17 18:01:24.128 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:01:24.128 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:01:24.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38037109375, Z-Position -0.127133016881402. ------
17-03-17 18:01:24.128 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17898 mm
17-03-17 18:01:24.128 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:01:24.128 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:01:24.128 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 39099, sync = True, waitForSettling = False)
17-03-17 18:01:24.128 -07 000000576 INF: Z Motor: Moving to -0.178984 mm, started at -0.127133 mm, distance = -51.85 um
17-03-17 18:01:24.138 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 18:01:24.138 -07 000000458 INF: Y Motor: Moving to 59.9126 mm, started at 75.3804 mm, delta = -15.4678 mm
17-03-17 18:01:24.138 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:01:24.138 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:01:24.138 -07 000000576 INF: FPGA: Xmit ZDACW 39099\n [Z Motor]
17-03-17 18:01:24.138 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 18:01:24.148 -07 000000576 INF: FPGA: 'ZDACW 39099' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:01:24.148 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:01:24.148 -07 000000593 INF: FPGA: Recv YRDPOS 154379
17-03-17 18:01:24.158 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:01:24.158 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:01:24.158 -07 000000458 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:01:24.158 -07 000000458 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 18:01:24.158 -07 000000458 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 18:01:24.168 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:01:24.168 -07 000000593 INF: FPGA: Recv ZDACR 39099
17-03-17 18:01:24.178 -07 000000458 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 18:01:24.178 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:01:24.178 -07 000000576 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 18:01:24.358 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:01:24.358 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:01:25.858 -07 000000593 INF: FPGA: Recv YMVTO 122702 24775
17-03-17 18:01:25.858 -07 000000458 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1675 ms to get response, and 1705 ms overall
17-03-17 18:01:25.858 -07 000000458 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-17 18:01:25.858 -07 000000458 INF: Y Motor: To move from 75.380 to 59.913 (-15.468 mm) should take 24748 steps, but required 24775 steps (15.484 mm). Slippage = 0.017 mm (0.00%).
17-03-17 18:01:25.858 -07 000000458 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1705 ms, distance = 15.468 mm, average velocity = 9.072 mm/sec
17-03-17 18:01:26.548 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:01:26.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:01:27.208 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 4.015368,
17-03-17 18:01:28.708 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:01:28.708 -07 000000593 INF: FPGA: Recv YRDPOS 122697
17-03-17 18:01:28.718 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:01:28.718 -07 000000458 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:01:28.738 -07 000000458 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:01:28.738 -07 000000458 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 18:01:28.738 -07 000000458 INF: Y Motor: Moved to 59.9106 after 4601 ms
17-03-17 18:01:28.738 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178984 mm (DAC = 39099)
17-03-17 18:01:28.738 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:28.738 -07 000000627 INF: FPGA: Recv ZSGSRD 37161
17-03-17 18:01:28.748 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:01:28.748 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:28.748 -07 000000627 INF: FPGA: Recv ZSGSRD 37150
17-03-17 18:01:28.758 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:28.758 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:28.758 -07 000000486 INF: FPGA: Recv ZSGSRD 37156
17-03-17 18:01:28.768 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:28.768 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:28.768 -07 000000433 INF: FPGA: Recv ZSGSRD 37152
17-03-17 18:01:28.778 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:28.778 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:28.778 -07 000000551 INF: FPGA: Recv ZSGSRD 37144
17-03-17 18:01:28.788 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:28.788 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:28.788 -07 000000409 INF: FPGA: Recv ZSGSRD 37153
17-03-17 18:01:28.798 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:28.798 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:28.798 -07 000000475 INF: FPGA: Recv ZSGSRD 37156
17-03-17 18:01:28.808 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:28.808 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:28.808 -07 000000433 INF: FPGA: Recv ZSGSRD 37149
17-03-17 18:01:28.818 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:28.818 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:28.818 -07 000000475 INF: FPGA: Recv ZSGSRD 37149
17-03-17 18:01:28.828 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:28.828 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:28.828 -07 000000627 INF: FPGA: Recv ZSGSRD 37153
17-03-17 18:01:28.838 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:28.838 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:01:28.838 -07 000000475 INF: FPGA: Recv ZPIEZORD 33479
17-03-17 18:01:28.848 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:28.848 -07 000000480 INF: Z Motor: Piezo is near 51.5 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.966 V. Piezo Error = -8.1 V.
17-03-17 18:01:28.848 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.0 um, Read 10 ADC samples: Avg = 37152 (-178.1 uncal um), Error = 0.9 uncal um, Median = 37152 (-178.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 37144 (-178.0 uncal um), Max = 37161 (-178.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:01:28.848 -07 000000480 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37152, posNoise = 9, negNoise = 8
17-03-17 18:01:28.848 -07 000000480 INF: Z Motor: After move to -0.178984, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:01:28.848 -07 000000480 INF: Z Motor: Settle wait time = 4604 ms, measure time = 106 ms (allowed 150 ms), total time = 4710 ms
17-03-17 18:01:28.848 -07 000000480 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:01:28.898 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4763 ms
17-03-17 18:01:28.898 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:01:28.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:01:28.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:01:28.898 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:01:28.898 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:01:28.898 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:01:28.898 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:01:28.898 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:01:28.898 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 18:01:28.928 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 18:01:28.928 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:01:28.928 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 18:01:28.928 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:01:28.938 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:01:28.938 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 41 ms.
17-03-17 18:01:28.948 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:01:28.988 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:01:29.188 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:01:29.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:01:29.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:01:29.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:01:29.228 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:01:29.228 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 18:01:29.228 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 18:01:29.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:01:29.318 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:29.318 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:01:29.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 18:01:29.428 -07 000000433 INF: Image SNR check: start
17-03-17 18:01:29.428 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:01:29.428 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:01:29.438 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:01:29.438 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:01:29.438 -07 000000433 INF: Image SNR check: pass  [peak (Max-Min)=76.95]
17-03-17 18:01:29.438 -07 000000433 INF: Autofocus start
17-03-17 18:01:29.438 -07 000000433 INF: MeasureProfile start
17-03-17 18:01:29.448 -07 000000433 INF: MeasureProfile done
17-03-17 18:01:29.448 -07 000000433 INF: X=64  Z correction [um]=0.2557664
17-03-17 18:01:29.458 -07 000000433 INF: Autofocus finished
17-03-17 18:01:29.638 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:01:29.638 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:01:29.638 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.178995681501838. ----------
17-03-17 18:01:29.638 -07 000000610 INF: Cycle	8	Tile	1	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:01:29.648 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37667, sync = True, waitForSettling = True)
17-03-17 18:01:29.648 -07 000000610 INF: Z Motor: Moving to -0.172428 mm, started at -0.178996 mm, distance = 6.57 um
17-03-17 18:01:29.648 -07 000000610 INF: FPGA: Xmit ZDACW 37667\n [Z Motor]
17-03-17 18:01:29.648 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 18:01:29.658 -07 000000610 INF: FPGA: 'ZDACW 37667' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:29.658 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:01:29.658 -07 000000576 INF: FPGA: Recv ZDACR 37667
17-03-17 18:01:29.668 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:29.668 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:01:29.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:29.818 -07 000000458 INF: FPGA: Recv ZSGSRD 36133
17-03-17 18:01:29.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:29.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:29.828 -07 000000576 INF: FPGA: Recv ZSGSRD 36138
17-03-17 18:01:29.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:29.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:29.838 -07 000000458 INF: FPGA: Recv ZSGSRD 36136
17-03-17 18:01:29.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:29.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:29.848 -07 000000576 INF: FPGA: Recv ZSGSRD 36127
17-03-17 18:01:29.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:29.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:29.858 -07 000000409 INF: FPGA: Recv ZSGSRD 36130
17-03-17 18:01:29.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:29.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:29.868 -07 000000576 INF: FPGA: Recv ZSGSRD 36136
17-03-17 18:01:29.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:29.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:29.878 -07 000000576 INF: FPGA: Recv ZSGSRD 36130
17-03-17 18:01:29.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:29.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:29.888 -07 000000433 INF: FPGA: Recv ZSGSRD 36127
17-03-17 18:01:29.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:29.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:29.898 -07 000000433 INF: FPGA: Recv ZSGSRD 36131
17-03-17 18:01:29.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:29.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:29.908 -07 000000433 INF: FPGA: Recv ZSGSRD 36136
17-03-17 18:01:29.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:29.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:01:29.918 -07 000000458 INF: FPGA: Recv ZPIEZORD 32109
17-03-17 18:01:29.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:01:29.928 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.748 V. Piezo Error = -8.9 V.
17-03-17 18:01:29.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.4 um, Read 10 ADC samples: Avg = 36132 (-171.6 uncal um), Error = 0.9 uncal um, Median = 36132 (-171.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36127 (-171.5 uncal um), Max = 36138 (-171.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:01:29.928 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36132, posNoise = 6, negNoise = 5
17-03-17 18:01:29.928 -07 000000610 INF: Z Motor: After move to -0.172428, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:01:29.928 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:01:29.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:01:29.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:01:29.928 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:01:29.928 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:01:29.928 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:01:29.928 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:01:29.928 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:01:29.928 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:01:29.928 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:01:29.928 -07 000000475 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 18:01:29.928 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:01:29.928 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:01:29.928 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:01:29.928 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:01:29.948 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:01:29.948 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:01:29.948 -07 000000475 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 18:01:29.948 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:01:29.958 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:01:29.958 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:01:29.968 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:01:29.968 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 44 ms.
17-03-17 18:01:29.978 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37844 150\n [Camera]
17-03-17 18:01:30.178 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:01:30.568 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:01:30.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:01:30.568 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:01:30.568 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:01:30.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:01:30.568 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:01:30.578 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:01:30.578 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 18:01:30.578 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:01:30.578 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 18:01:30.758 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37844 776
17-03-17 18:01:30.908 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:01:30.948 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 365 ms.
17-03-17 18:01:30.948 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 366 ms.
17-03-17 18:01:30.948 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:30.948 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 371 ms.
17-03-17 18:01:30.948 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 18:01:30.948 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:30.948 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:01:30.948 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:01:30.948 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:01:30.958 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:01:31.098 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:01:31.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:01:31.098 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:01:31.218 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:01:31.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:01:31.218 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:01:31.218 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:01:31.218 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 18:01:31.228 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:01:31.228 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2181237920, 0x0, 418435064) start.
17-03-17 18:01:31.288 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:01:31.288 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:01:31.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37844 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-17 18:01:31.288 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:01:31.288 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.172442985117242. ------
17-03-17 18:01:31.298 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:01:31.298 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17875 mm
17-03-17 18:01:31.298 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:01:31.298 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:01:31.298 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 39048, sync = True, waitForSettling = False)
17-03-17 18:01:31.298 -07 000000486 INF: Z Motor: Moving to -0.178750 mm, started at -0.172443 mm, distance = -6.31 um
17-03-17 18:01:31.298 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 18:01:31.298 -07 000000409 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 18:01:31.308 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:01:31.308 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:01:31.308 -07 000000593 INF: FPGA: Recv YRDPOS 122697
17-03-17 18:01:31.318 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:01:31.318 -07 000000409 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:01:31.318 -07 000000409 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:01:31.318 -07 000000409 INF: Y Motor: Moving 1331 steps1
17-03-17 18:01:31.318 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:01:31.328 -07 000000486 INF: FPGA: Xmit ZDACW 39048\n [Z Motor]
17-03-17 18:01:31.328 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 18:01:31.338 -07 000000486 INF: FPGA: 'ZDACW 39048' command took 1 ms to send, 0 ms to get response, and 33 ms overall
17-03-17 18:01:31.338 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:01:31.348 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:01:31.348 -07 000000551 INF: FPGA: Recv ZDACR 39048
17-03-17 18:01:31.358 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:01:31.358 -07 000000486 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 18:01:31.518 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:01:31.518 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 213 ms overall
17-03-17 18:01:31.548 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:01:31.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:01:31.598 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2181237920, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:01:31.608 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:01:31.608 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:31.608 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:01:31.608 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:01:31.608 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:01:31.608 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:31.608 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:01:31.608 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-17 18:01:31.618 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:01:31.708 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 18:01:31.708 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:01:31.738 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:01:31.738 -07 000000433 INF: FPGA: Recv YRDPOS 124381
17-03-17 18:01:31.748 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:01:31.748 -07 000000409 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:01:31.748 -07 000000409 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 18:01:31.748 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.096 mm/sec
17-03-17 18:01:32.568 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 4.004458,
17-03-17 18:01:32.698 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:01:32.698 -07 000000541 INF: FPGA: Recv YRDPOS 124381
17-03-17 18:01:32.708 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:01:32.708 -07 000000409 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:01:32.728 -07 000000409 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:01:32.728 -07 000000409 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:01:32.728 -07 000000409 INF: Y Motor: Moved to 60.7329 after 1424 ms (table move)
17-03-17 18:01:32.728 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178750 mm (DAC = 39048)
17-03-17 18:01:32.728 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:32.728 -07 000000409 INF: FPGA: Recv ZSGSRD 37120
17-03-17 18:01:32.738 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:01:32.738 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:32.738 -07 000000626 INF: FPGA: Recv ZSGSRD 37110
17-03-17 18:01:32.748 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:32.748 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:32.748 -07 000000409 INF: FPGA: Recv ZSGSRD 37117
17-03-17 18:01:32.758 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:32.758 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:32.758 -07 000000409 INF: FPGA: Recv ZSGSRD 37106
17-03-17 18:01:32.768 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:32.768 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:32.768 -07 000000409 INF: FPGA: Recv ZSGSRD 37115
17-03-17 18:01:32.778 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:32.778 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:32.778 -07 000000409 INF: FPGA: Recv ZSGSRD 37123
17-03-17 18:01:32.788 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:32.788 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:32.788 -07 000000551 INF: FPGA: Recv ZSGSRD 37119
17-03-17 18:01:32.798 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:32.798 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:32.798 -07 000000551 INF: FPGA: Recv ZSGSRD 37114
17-03-17 18:01:32.808 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:32.808 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:32.808 -07 000000627 INF: FPGA: Recv ZSGSRD 37112
17-03-17 18:01:32.818 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:32.818 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:32.818 -07 000000627 INF: FPGA: Recv ZSGSRD 37114
17-03-17 18:01:32.828 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:32.828 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:01:32.828 -07 000000627 INF: FPGA: Recv ZPIEZORD 33388
17-03-17 18:01:32.838 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:32.838 -07 000000475 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.958 V. Piezo Error = -8.3 V.
17-03-17 18:01:32.838 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.8 um, Read 10 ADC samples: Avg = 37115 (-177.9 uncal um), Error = 0.9 uncal um, Median = 37114 (-177.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 37106 (-177.8 uncal um), Max = 37123 (-177.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:01:32.838 -07 000000475 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37115, posNoise = 8, negNoise = 9
17-03-17 18:01:32.838 -07 000000475 INF: Z Motor: After move to -0.178750, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:01:32.838 -07 000000475 INF: Z Motor: Settle wait time = 1428 ms, measure time = 105 ms (allowed 150 ms), total time = 1533 ms
17-03-17 18:01:32.838 -07 000000475 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:01:32.888 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 18:01:32.888 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:01:32.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:01:32.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:01:32.888 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:01:32.888 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:01:32.888 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:01:32.888 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:01:32.888 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:01:32.888 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:01:32.898 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:01:32.898 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:01:32.898 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:01:32.898 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:01:32.908 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:01:32.948 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:01:33.148 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:01:33.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:01:33.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:01:33.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:01:33.188 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:01:33.188 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 18:01:33.188 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 18:01:33.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:01:33.278 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:33.278 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:01:33.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:01:33.388 -07 000000541 INF: Autofocus start
17-03-17 18:01:33.388 -07 000000541 INF: MeasureProfile start
17-03-17 18:01:33.388 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:01:33.388 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:01:33.398 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:01:33.398 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:01:33.398 -07 000000541 INF: MeasureProfile done
17-03-17 18:01:33.398 -07 000000541 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:01:33.398 -07 000000541 INF: Autofocus finished
17-03-17 18:01:33.598 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:01:33.598 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:01:33.598 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.178757985652593. ----------
17-03-17 18:01:33.598 -07 000000610 INF: Cycle	8	Tile	2	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:01:33.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37563, sync = True, waitForSettling = True)
17-03-17 18:01:33.608 -07 000000610 INF: Z Motor: Moving to -0.171952 mm, started at -0.178758 mm, distance = 6.81 um
17-03-17 18:01:33.608 -07 000000610 INF: FPGA: Xmit ZDACW 37563\n [Z Motor]
17-03-17 18:01:33.608 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:01:33.618 -07 000000610 INF: FPGA: 'ZDACW 37563' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:33.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:01:33.618 -07 000000551 INF: FPGA: Recv ZDACR 37563
17-03-17 18:01:33.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:33.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:01:33.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:33.778 -07 000000576 INF: FPGA: Recv ZSGSRD 36059
17-03-17 18:01:33.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:01:33.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:33.788 -07 000000480 INF: FPGA: Recv ZSGSRD 36058
17-03-17 18:01:33.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:33.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:33.798 -07 000000409 INF: FPGA: Recv ZSGSRD 36056
17-03-17 18:01:33.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:01:33.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:33.808 -07 000000626 INF: FPGA: Recv ZSGSRD 36055
17-03-17 18:01:33.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:33.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:33.818 -07 000000480 INF: FPGA: Recv ZSGSRD 36060
17-03-17 18:01:33.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:33.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:33.828 -07 000000458 INF: FPGA: Recv ZSGSRD 36060
17-03-17 18:01:33.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:33.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:33.838 -07 000000576 INF: FPGA: Recv ZSGSRD 36057
17-03-17 18:01:33.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:33.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:33.848 -07 000000626 INF: FPGA: Recv ZSGSRD 36058
17-03-17 18:01:33.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:33.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:33.858 -07 000000627 INF: FPGA: Recv ZSGSRD 36054
17-03-17 18:01:33.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:33.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:33.868 -07 000000626 INF: FPGA: Recv ZSGSRD 36060
17-03-17 18:01:33.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:33.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:01:33.878 -07 000000593 INF: FPGA: Recv ZPIEZORD 32024
17-03-17 18:01:33.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:33.888 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.732 V. Piezo Error = -8.9 V.
17-03-17 18:01:33.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36058 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36058 (-171.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36054 (-171.1 uncal um), Max = 36060 (-171.1 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:01:33.888 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36058, posNoise = 2, negNoise = 4
17-03-17 18:01:33.888 -07 000000610 INF: Z Motor: After move to -0.171952, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:01:33.888 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:01:33.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:01:33.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:01:33.888 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:01:33.888 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:01:33.888 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:01:33.888 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:01:33.888 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:01:33.888 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:01:33.888 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:01:33.888 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:01:33.888 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:01:33.888 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:01:33.898 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:01:33.898 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:01:33.898 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:01:33.898 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:01:33.898 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:01:33.898 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 18:01:33.908 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:01:33.908 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:01:33.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37739 150\n [Camera]
17-03-17 18:01:34.108 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:01:34.498 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:01:34.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:01:34.498 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:01:34.498 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:01:34.498 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) start.
17-03-17 18:01:34.498 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:01:34.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:01:34.498 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:01:34.498 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:01:34.498 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1053954096, 0x0, 418435064) start.
17-03-17 18:01:34.688 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37739 776
17-03-17 18:01:34.838 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:01:34.878 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1053954096, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 18:01:34.878 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 18:01:34.878 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:34.878 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:01:34.878 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:01:34.878 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:34.878 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:01:34.878 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:01:34.878 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:01:34.888 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:01:35.028 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:01:35.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:01:35.028 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:01:35.028 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:01:35.028 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1089376360, 0x0, 391868352) start.
17-03-17 18:01:35.028 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:01:35.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:01:35.028 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:01:35.028 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:01:35.028 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1124798624, 0x0, 418435064) start.
17-03-17 18:01:35.218 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:01:35.218 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:01:35.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37739 150' command took 2 ms to send, 1307 ms to get response, and 1313 ms overall
17-03-17 18:01:35.338 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:01:35.338 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.171967593418752. ------
17-03-17 18:01:35.348 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:01:35.348 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17855 mm
17-03-17 18:01:35.348 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:01:35.348 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 18:01:35.348 -07 000000409 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 18:01:35.348 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 39004, sync = True, waitForSettling = False)
17-03-17 18:01:35.348 -07 000000593 INF: Z Motor: Moving to -0.178549 mm, started at -0.171968 mm, distance = -6.58 um
17-03-17 18:01:35.348 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:01:35.358 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:01:35.358 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:01:35.358 -07 000000458 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:01:35.368 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:01:35.368 -07 000000409 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:01:35.368 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:01:35.368 -07 000000409 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:01:35.368 -07 000000409 INF: Y Motor: Moving 1343 steps-20
17-03-17 18:01:35.378 -07 000000593 INF: FPGA: Xmit ZDACW 39004\n [Z Motor]
17-03-17 18:01:35.378 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 18:01:35.388 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:01:35.388 -07 000000593 INF: FPGA: 'ZDACW 39004' command took 0 ms to send, 0 ms to get response, and 33 ms overall
17-03-17 18:01:35.398 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:01:35.398 -07 000000541 INF: FPGA: Recv ZDACR 39004
17-03-17 18:01:35.408 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:01:35.408 -07 000000593 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 18:01:35.418 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1089376360, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 18:01:35.418 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:01:35.418 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:35.418 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1124798624, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 18:01:35.428 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:01:35.428 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:35.428 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:01:35.428 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 18:01:35.428 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:01:35.438 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:01:35.568 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:01:35.568 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 18:01:35.758 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 18:01:35.758 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 18:01:35.788 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:01:35.798 -07 000000627 INF: FPGA: Recv YRDPOS 126083
17-03-17 18:01:35.798 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:01:35.798 -07 000000409 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:01:35.798 -07 000000409 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 18:01:35.798 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.840 mm, average velocity = 2.137 mm/sec
17-03-17 18:01:36.548 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:01:36.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:01:36.748 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:01:36.748 -07 000000551 INF: FPGA: Recv YRDPOS 126083
17-03-17 18:01:36.758 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:01:36.758 -07 000000409 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:01:36.768 -07 000000409 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:01:36.768 -07 000000409 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:01:36.768 -07 000000409 INF: Y Motor: Moved to 61.5640 after 1424 ms (table move)
17-03-17 18:01:36.778 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178549 mm (DAC = 39004)
17-03-17 18:01:36.778 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:36.778 -07 000000593 INF: FPGA: Recv ZSGSRD 37082
17-03-17 18:01:36.788 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:01:36.788 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:36.788 -07 000000551 INF: FPGA: Recv ZSGSRD 37079
17-03-17 18:01:36.798 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:36.798 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:36.798 -07 000000480 INF: FPGA: Recv ZSGSRD 37078
17-03-17 18:01:36.808 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:36.808 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:36.808 -07 000000541 INF: FPGA: Recv ZSGSRD 37078
17-03-17 18:01:36.818 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:36.818 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:36.818 -07 000000480 INF: FPGA: Recv ZSGSRD 37088
17-03-17 18:01:36.828 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:36.828 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:36.828 -07 000000551 INF: FPGA: Recv ZSGSRD 37087
17-03-17 18:01:36.838 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:36.838 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:36.838 -07 000000458 INF: FPGA: Recv ZSGSRD 37086
17-03-17 18:01:36.848 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:36.848 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:36.848 -07 000000627 INF: FPGA: Recv ZSGSRD 37087
17-03-17 18:01:36.858 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:36.858 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:36.858 -07 000000486 INF: FPGA: Recv ZSGSRD 37087
17-03-17 18:01:36.868 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:36.868 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:36.868 -07 000000541 INF: FPGA: Recv ZSGSRD 37087
17-03-17 18:01:36.878 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:36.878 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:01:36.878 -07 000000480 INF: FPGA: Recv ZPIEZORD 33373
17-03-17 18:01:36.888 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:36.888 -07 000000433 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.952 V. Piezo Error = -8.2 V.
17-03-17 18:01:36.888 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37084 (-177.7 uncal um), Error = 0.9 uncal um, Median = 37086 (-177.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 37078 (-177.6 uncal um), Max = 37088 (-177.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:01:36.888 -07 000000433 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37084, posNoise = 4, negNoise = 6
17-03-17 18:01:36.888 -07 000000433 INF: Z Motor: After move to -0.178549, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:01:36.888 -07 000000433 INF: Z Motor: Settle wait time = 1426 ms, measure time = 108 ms (allowed 150 ms), total time = 1534 ms
17-03-17 18:01:36.888 -07 000000433 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:01:36.938 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 18:01:36.938 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:01:36.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:01:36.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:01:36.938 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:01:36.938 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:01:36.938 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:01:36.938 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:01:36.938 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:01:36.938 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:01:36.948 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:01:36.948 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:01:36.948 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:01:36.948 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:01:36.958 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:01:36.998 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:01:37.198 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:01:37.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:01:37.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:01:37.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:01:37.238 -07 000000409 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:01:37.238 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 18:01:37.238 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 18:01:37.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:01:37.318 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:37.318 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:01:37.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:01:37.338 -07 000000458 INF: Autofocus start
17-03-17 18:01:37.338 -07 000000458 INF: MeasureProfile start
17-03-17 18:01:37.338 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:01:37.338 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:01:37.348 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:01:37.348 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:01:37.348 -07 000000458 INF: MeasureProfile done
17-03-17 18:01:37.348 -07 000000458 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:01:37.348 -07 000000458 INF: Autofocus finished
17-03-17 18:01:37.548 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:01:37.548 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:01:37.548 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.178558835076198. ----------
17-03-17 18:01:37.548 -07 000000610 INF: Cycle	8	Tile	3	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:01:37.558 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37519, sync = True, waitForSettling = True)
17-03-17 18:01:37.558 -07 000000610 INF: Z Motor: Moving to -0.171751 mm, started at -0.178559 mm, distance = 6.81 um
17-03-17 18:01:37.558 -07 000000610 INF: FPGA: Xmit ZDACW 37519\n [Z Motor]
17-03-17 18:01:37.558 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 18:01:37.568 -07 000000610 INF: FPGA: 'ZDACW 37519' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:01:37.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:01:37.568 -07 000000433 INF: FPGA: Recv ZDACR 37519
17-03-17 18:01:37.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:37.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:01:37.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:37.728 -07 000000458 INF: FPGA: Recv ZSGSRD 36026
17-03-17 18:01:37.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:01:37.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:37.738 -07 000000458 INF: FPGA: Recv ZSGSRD 36022
17-03-17 18:01:37.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:37.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:37.748 -07 000000541 INF: FPGA: Recv ZSGSRD 36027
17-03-17 18:01:37.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:37.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:37.758 -07 000000458 INF: FPGA: Recv ZSGSRD 36025
17-03-17 18:01:37.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:37.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:37.768 -07 000000458 INF: FPGA: Recv ZSGSRD 36023
17-03-17 18:01:37.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:37.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:37.778 -07 000000458 INF: FPGA: Recv ZSGSRD 36025
17-03-17 18:01:37.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:37.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:37.788 -07 000000541 INF: FPGA: Recv ZSGSRD 36022
17-03-17 18:01:37.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:37.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:37.798 -07 000000458 INF: FPGA: Recv ZSGSRD 36028
17-03-17 18:01:37.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:37.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:37.808 -07 000000458 INF: FPGA: Recv ZSGSRD 36023
17-03-17 18:01:37.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:37.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:37.818 -07 000000458 INF: FPGA: Recv ZSGSRD 36024
17-03-17 18:01:37.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:37.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:01:37.828 -07 000000458 INF: FPGA: Recv ZPIEZORD 31954
17-03-17 18:01:37.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:37.838 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.725 V. Piezo Error = -9.0 V.
17-03-17 18:01:37.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36024 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36024 (-170.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36022 (-170.9 uncal um), Max = 36028 (-170.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 18:01:37.838 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36024, posNoise = 4, negNoise = 2
17-03-17 18:01:37.838 -07 000000610 INF: Z Motor: After move to -0.171751, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:01:37.838 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:01:37.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:01:37.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:01:37.838 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:01:37.838 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:01:37.838 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:01:37.838 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:01:37.838 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:01:37.838 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:01:37.838 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 18:01:37.838 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:01:37.838 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 18:01:37.838 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:01:37.848 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:01:37.848 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:01:37.848 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:01:37.848 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:01:37.858 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:01:37.858 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:01:37.858 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:01:37.858 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:01:37.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37696 150\n [Camera]
17-03-17 18:01:37.938 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 3.993549,
17-03-17 18:01:38.058 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:01:38.448 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:01:38.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:01:38.458 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:01:38.458 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:01:38.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:01:38.458 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:01:38.458 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:01:38.458 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2181237920, 0x0, 391868352) start.
17-03-17 18:01:38.468 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:01:38.468 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) start.
17-03-17 18:01:38.648 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37696 776
17-03-17 18:01:38.798 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:01:38.858 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2181237920, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:01:38.858 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:01:38.858 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:38.858 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:01:38.858 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 18:01:38.868 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 18:01:38.868 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:01:38.868 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:38.868 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:01:38.878 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 18:01:38.988 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:01:38.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:01:38.988 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:01:38.988 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:01:38.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:01:38.988 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:01:38.988 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:01:38.988 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:01:38.988 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:01:38.988 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1053954096, 0x0, 391868352) start.
17-03-17 18:01:39.178 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:01:39.178 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:01:39.178 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37696 150' command took 2 ms to send, 1301 ms to get response, and 1313 ms overall
17-03-17 18:01:39.178 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:01:39.178 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.171749170205932. ------
17-03-17 18:01:39.178 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:01:39.178 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17793 mm
17-03-17 18:01:39.178 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:01:39.188 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:01:39.188 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:01:39.188 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 38869, sync = True, waitForSettling = False)
17-03-17 18:01:39.188 -07 000000627 INF: Z Motor: Moving to -0.177931 mm, started at -0.171749 mm, distance = -6.18 um
17-03-17 18:01:39.188 -07 000000627 INF: FPGA: Xmit ZDACW 38869\n [Z Motor]
17-03-17 18:01:39.188 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 18:01:39.188 -07 000000480 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 18:01:39.188 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 18:01:39.198 -07 000000627 INF: FPGA: 'ZDACW 38869' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:01:39.198 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:01:39.198 -07 000000486 INF: FPGA: Recv ZDACR 38869
17-03-17 18:01:39.208 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:39.208 -07 000000627 INF: Z Motor: MoveAbsStepped took 18 ms (did NOT wait for settling yet))
17-03-17 18:01:39.208 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:01:39.218 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:01:39.218 -07 000000475 INF: FPGA: Recv YRDPOS 126083
17-03-17 18:01:39.228 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 36 ms overall
17-03-17 18:01:39.228 -07 000000480 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:01:39.228 -07 000000480 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:01:39.228 -07 000000480 INF: Y Motor: Moving 1342 steps-18
17-03-17 18:01:39.228 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:01:39.388 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1053954096, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 18:01:39.428 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 18:01:39.428 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:01:39.428 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 212 ms to get response, and 240 ms overall
17-03-17 18:01:39.428 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 436 ms.
17-03-17 18:01:39.428 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:39.428 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 434 ms.
17-03-17 18:01:39.428 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:39.428 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:01:39.438 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:01:39.438 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 450 ms.
17-03-17 18:01:39.438 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 447 ms.
17-03-17 18:01:39.598 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 18:01:39.598 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 18:01:39.638 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:01:39.638 -07 000000433 INF: FPGA: Recv YRDPOS 127786
17-03-17 18:01:39.648 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:39.648 -07 000000480 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:01:39.648 -07 000000480 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 18:01:39.648 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.839 mm, average velocity = 2.219 mm/sec
17-03-17 18:01:40.598 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:01:40.598 -07 000000433 INF: FPGA: Recv YRDPOS 127786
17-03-17 18:01:40.608 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:01:40.608 -07 000000480 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:01:40.618 -07 000000480 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:01:40.618 -07 000000480 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:01:40.618 -07 000000480 INF: Y Motor: Moved to 62.3955 after 1436 ms (table move)
17-03-17 18:01:40.628 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177931 mm (DAC = 38869)
17-03-17 18:01:40.628 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:40.628 -07 000000593 INF: FPGA: Recv ZSGSRD 36988
17-03-17 18:01:40.638 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:01:40.638 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:40.638 -07 000000475 INF: FPGA: Recv ZSGSRD 36983
17-03-17 18:01:40.648 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:40.648 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:40.648 -07 000000561 INF: FPGA: Recv ZSGSRD 36990
17-03-17 18:01:40.658 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:40.658 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:40.658 -07 000000480 INF: FPGA: Recv ZSGSRD 36991
17-03-17 18:01:40.668 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:40.668 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:40.668 -07 000000626 INF: FPGA: Recv ZSGSRD 36990
17-03-17 18:01:40.678 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:40.678 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:40.678 -07 000000475 INF: FPGA: Recv ZSGSRD 36990
17-03-17 18:01:40.688 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:40.688 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:40.688 -07 000000458 INF: FPGA: Recv ZSGSRD 36993
17-03-17 18:01:40.698 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:40.698 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:40.698 -07 000000551 INF: FPGA: Recv ZSGSRD 36987
17-03-17 18:01:40.708 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:40.708 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:40.708 -07 000000593 INF: FPGA: Recv ZSGSRD 36982
17-03-17 18:01:40.718 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:40.718 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:40.718 -07 000000458 INF: FPGA: Recv ZSGSRD 36988
17-03-17 18:01:40.728 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:40.728 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:01:40.728 -07 000000551 INF: FPGA: Recv ZPIEZORD 33239
17-03-17 18:01:40.738 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:40.738 -07 000000409 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.931 V. Piezo Error = -8.3 V.
17-03-17 18:01:40.738 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36988 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36989 (-177.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36982 (-177.0 uncal um), Max = 36993 (-177.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:01:40.738 -07 000000409 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36988, posNoise = 5, negNoise = 6
17-03-17 18:01:40.738 -07 000000409 INF: Z Motor: After move to -0.177931, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:01:40.738 -07 000000409 INF: Z Motor: Settle wait time = 1440 ms, measure time = 108 ms (allowed 150 ms), total time = 1548 ms
17-03-17 18:01:40.738 -07 000000409 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:01:40.788 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 18:01:40.788 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:01:40.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:01:40.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:01:40.788 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:01:40.788 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:01:40.788 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:01:40.788 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:01:40.788 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:01:40.788 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:01:40.798 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:01:40.798 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:01:40.808 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:01:40.808 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:01:40.808 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:01:40.848 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:01:41.048 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:01:41.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:01:41.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:01:41.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-17 18:01:41.088 -07 000000409 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:01:41.088 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 18:01:41.088 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 18:01:41.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 18:01:41.178 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:41.178 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:01:41.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 18:01:41.288 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:01:41.288 -07 000000551 INF: Autofocus start
17-03-17 18:01:41.288 -07 000000551 INF: MeasureProfile start
17-03-17 18:01:41.288 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:01:41.298 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:01:41.298 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:01:41.308 -07 000000551 INF: MeasureProfile done
17-03-17 18:01:41.308 -07 000000551 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:01:41.308 -07 000000551 INF: Autofocus finished
17-03-17 18:01:41.498 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:01:41.498 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:01:41.498 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.177942110710589. ----------
17-03-17 18:01:41.498 -07 000000610 INF: Cycle	8	Tile	4	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:01:41.508 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37366, sync = True, waitForSettling = True)
17-03-17 18:01:41.508 -07 000000610 INF: Z Motor: Moving to -0.171051 mm, started at -0.177942 mm, distance = 6.89 um
17-03-17 18:01:41.508 -07 000000610 INF: FPGA: Xmit ZDACW 37366\n [Z Motor]
17-03-17 18:01:41.508 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 18:01:41.518 -07 000000610 INF: FPGA: 'ZDACW 37366' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:01:41.518 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:01:41.518 -07 000000409 INF: FPGA: Recv ZDACR 37366
17-03-17 18:01:41.528 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:41.528 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:01:41.548 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:01:41.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:01:41.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:41.678 -07 000000551 INF: FPGA: Recv ZSGSRD 35917
17-03-17 18:01:41.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:41.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:41.688 -07 000000551 INF: FPGA: Recv ZSGSRD 35913
17-03-17 18:01:41.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:41.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:41.698 -07 000000551 INF: FPGA: Recv ZSGSRD 35914
17-03-17 18:01:41.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:41.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:41.708 -07 000000551 INF: FPGA: Recv ZSGSRD 35914
17-03-17 18:01:41.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:41.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:41.718 -07 000000551 INF: FPGA: Recv ZSGSRD 35920
17-03-17 18:01:41.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:41.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:41.728 -07 000000551 INF: FPGA: Recv ZSGSRD 35917
17-03-17 18:01:41.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:41.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:41.738 -07 000000486 INF: FPGA: Recv ZSGSRD 35919
17-03-17 18:01:41.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:41.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:41.748 -07 000000551 INF: FPGA: Recv ZSGSRD 35922
17-03-17 18:01:41.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:41.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:41.758 -07 000000627 INF: FPGA: Recv ZSGSRD 35916
17-03-17 18:01:41.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:41.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:41.768 -07 000000627 INF: FPGA: Recv ZSGSRD 35913
17-03-17 18:01:41.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:41.778 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:01:41.778 -07 000000627 INF: FPGA: Recv ZPIEZORD 31847
17-03-17 18:01:41.788 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:41.788 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.702 V. Piezo Error = -9.0 V.
17-03-17 18:01:41.788 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35916 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35916 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35913 (-170.2 uncal um), Max = 35922 (-170.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:01:41.788 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35916, posNoise = 6, negNoise = 3
17-03-17 18:01:41.788 -07 000000610 INF: Z Motor: After move to -0.171051, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:01:41.788 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:01:41.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:01:41.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:01:41.788 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:01:41.788 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:01:41.788 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:01:41.788 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:01:41.788 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:01:41.788 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:01:41.788 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 18:01:41.788 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:01:41.788 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:01:41.788 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:01:41.798 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:01:41.798 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:01:41.798 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:01:41.798 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:01:41.808 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:01:41.808 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:01:41.808 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:01:41.808 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:01:41.808 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37543 150\n [Camera]
17-03-17 18:01:42.008 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:01:42.398 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:01:42.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:01:42.398 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:01:42.398 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:01:42.398 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:01:42.398 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:01:42.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:01:42.398 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:01:42.398 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:01:42.398 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:01:42.588 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37543 776
17-03-17 18:01:42.738 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:01:42.778 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 18:01:42.778 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:01:42.778 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:42.778 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:01:42.778 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:01:42.778 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:42.788 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:01:42.788 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:01:42.788 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:01:42.798 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:01:42.928 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:01:42.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:01:42.928 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:01:42.928 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:01:42.928 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:01:42.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:01:42.938 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:01:42.938 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:01:42.938 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:01:42.938 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:01:43.118 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:01:43.118 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:01:43.118 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37543 150' command took 2 ms to send, 1308 ms to get response, and 1314 ms overall
17-03-17 18:01:43.128 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:01:43.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.171055355294621. ------
17-03-17 18:01:43.128 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17774 mm
17-03-17 18:01:43.128 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:01:43.128 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:01:43.128 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38827, sync = True, waitForSettling = False)
17-03-17 18:01:43.128 -07 000000626 INF: Z Motor: Moving to -0.177739 mm, started at -0.171055 mm, distance = -6.68 um
17-03-17 18:01:43.128 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 18:01:43.128 -07 000000541 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 18:01:43.128 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:01:43.138 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:01:43.138 -07 000000626 INF: FPGA: Xmit ZDACW 38827\n [Z Motor]
17-03-17 18:01:43.138 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 18:01:43.258 -07 000000626 INF: FPGA: 'ZDACW 38827' command took 0 ms to send, 0 ms to get response, and 131 ms overall
17-03-17 18:01:43.258 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:01:43.268 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:01:43.268 -07 000000627 INF: FPGA: Recv YRDPOS 127786
17-03-17 18:01:43.268 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 133 ms overall
17-03-17 18:01:43.268 -07 000000541 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:01:43.268 -07 000000541 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:01:43.268 -07 000000541 INF: Y Motor: Moving 1339 steps-15
17-03-17 18:01:43.268 -07 000000480 INF: FPGA: Recv ZDACR 38827
17-03-17 18:01:43.278 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:01:43.278 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:01:43.278 -07 000000626 INF: Z Motor: MoveAbsStepped took 142 ms (did NOT wait for settling yet))
17-03-17 18:01:43.288 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:01:43.308 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 3.973092,
17-03-17 18:01:43.328 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 18:01:43.328 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:01:43.328 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:43.328 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:01:43.328 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:01:43.328 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:43.328 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:01:43.338 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:01:43.338 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:01:43.338 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:01:43.478 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:01:43.478 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 342 ms overall
17-03-17 18:01:43.668 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 18:01:43.668 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 398 ms overall
17-03-17 18:01:43.698 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:01:43.698 -07 000000576 INF: FPGA: Recv YRDPOS 129483
17-03-17 18:01:43.708 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:01:43.708 -07 000000541 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:01:43.708 -07 000000541 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 18:01:43.708 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.837 mm, average velocity = 2.103 mm/sec
17-03-17 18:01:44.658 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:01:44.658 -07 000000486 INF: FPGA: Recv YRDPOS 129483
17-03-17 18:01:44.668 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:01:44.668 -07 000000541 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:01:44.678 -07 000000541 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:01:44.688 -07 000000541 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:01:44.688 -07 000000541 INF: Y Motor: Moved to 63.2241 after 1552 ms (table move)
17-03-17 18:01:44.688 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177739 mm (DAC = 38827)
17-03-17 18:01:44.688 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:44.688 -07 000000486 INF: FPGA: Recv ZSGSRD 36967
17-03-17 18:01:44.698 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:01:44.698 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:44.698 -07 000000480 INF: FPGA: Recv ZSGSRD 36965
17-03-17 18:01:44.708 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:44.708 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:44.708 -07 000000551 INF: FPGA: Recv ZSGSRD 36965
17-03-17 18:01:44.718 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:44.718 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:44.718 -07 000000480 INF: FPGA: Recv ZSGSRD 36953
17-03-17 18:01:44.728 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:44.728 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:44.728 -07 000000433 INF: FPGA: Recv ZSGSRD 36951
17-03-17 18:01:44.738 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:44.738 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:44.738 -07 000000561 INF: FPGA: Recv ZSGSRD 36961
17-03-17 18:01:44.748 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:44.748 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:44.748 -07 000000627 INF: FPGA: Recv ZSGSRD 36951
17-03-17 18:01:44.758 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:44.758 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:44.758 -07 000000482 INF: FPGA: Recv ZSGSRD 36952
17-03-17 18:01:44.768 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:44.768 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:44.768 -07 000000433 INF: FPGA: Recv ZSGSRD 36960
17-03-17 18:01:44.778 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:44.778 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:44.778 -07 000000409 INF: FPGA: Recv ZSGSRD 36965
17-03-17 18:01:44.788 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:44.788 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:01:44.788 -07 000000576 INF: FPGA: Recv ZPIEZORD 33176
17-03-17 18:01:44.798 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:44.798 -07 000000475 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.925 V. Piezo Error = -8.4 V.
17-03-17 18:01:44.798 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.7 um, Read 10 ADC samples: Avg = 36959 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36960 (-176.9 uncal um), StdDev = 7 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36951 (-176.8 uncal um), Max = 36967 (-176.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:01:44.798 -07 000000475 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36959, posNoise = 8, negNoise = 8
17-03-17 18:01:44.798 -07 000000475 INF: Z Motor: After move to -0.177739, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:01:44.798 -07 000000475 INF: Z Motor: Settle wait time = 1556 ms, measure time = 107 ms (allowed 150 ms), total time = 1663 ms
17-03-17 18:01:44.798 -07 000000475 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:01:44.848 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1715 ms
17-03-17 18:01:44.848 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:01:44.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:01:44.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:01:44.848 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:01:44.848 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:01:44.848 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:01:44.848 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:01:44.848 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:01:44.858 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:01:44.858 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:01:44.858 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:01:44.868 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:01:44.868 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:01:44.868 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:01:44.918 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:01:45.118 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:01:45.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:01:45.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:01:45.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:01:45.158 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:01:45.158 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 18:01:45.158 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 18:01:45.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:01:45.248 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:45.248 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:01:45.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:01:45.258 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:01:45.258 -07 000000576 INF: Autofocus start
17-03-17 18:01:45.258 -07 000000576 INF: MeasureProfile start
17-03-17 18:01:45.258 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:01:45.268 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:01:45.268 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:01:45.268 -07 000000576 INF: MeasureProfile done
17-03-17 18:01:45.268 -07 000000576 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:01:45.268 -07 000000576 INF: Autofocus finished
17-03-17 18:01:45.468 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:01:45.468 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:01:45.468 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.177755808558478. ----------
17-03-17 18:01:45.468 -07 000000610 INF: Cycle	8	Tile	5	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:01:45.478 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37324, sync = True, waitForSettling = True)
17-03-17 18:01:45.478 -07 000000610 INF: Z Motor: Moving to -0.170858 mm, started at -0.177756 mm, distance = 6.90 um
17-03-17 18:01:45.478 -07 000000610 INF: FPGA: Xmit ZDACW 37324\n [Z Motor]
17-03-17 18:01:45.478 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 18:01:45.488 -07 000000610 INF: FPGA: 'ZDACW 37324' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:01:45.488 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:01:45.488 -07 000000486 INF: FPGA: Recv ZDACR 37324
17-03-17 18:01:45.498 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:45.498 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:01:45.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:45.648 -07 000000482 INF: FPGA: Recv ZSGSRD 35890
17-03-17 18:01:45.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:45.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:45.658 -07 000000541 INF: FPGA: Recv ZSGSRD 35896
17-03-17 18:01:45.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:01:45.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:45.668 -07 000000561 INF: FPGA: Recv ZSGSRD 35884
17-03-17 18:01:45.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:45.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:45.678 -07 000000458 INF: FPGA: Recv ZSGSRD 35888
17-03-17 18:01:45.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:45.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:45.688 -07 000000482 INF: FPGA: Recv ZSGSRD 35886
17-03-17 18:01:45.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:45.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:45.698 -07 000000551 INF: FPGA: Recv ZSGSRD 35891
17-03-17 18:01:45.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:45.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:45.708 -07 000000475 INF: FPGA: Recv ZSGSRD 35890
17-03-17 18:01:45.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:45.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:45.718 -07 000000593 INF: FPGA: Recv ZSGSRD 35883
17-03-17 18:01:45.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:45.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:45.728 -07 000000627 INF: FPGA: Recv ZSGSRD 35895
17-03-17 18:01:45.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:45.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:45.738 -07 000000433 INF: FPGA: Recv ZSGSRD 35883
17-03-17 18:01:45.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:45.748 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:01:45.748 -07 000000475 INF: FPGA: Recv ZPIEZORD 31749
17-03-17 18:01:45.758 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:45.758 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.695 V. Piezo Error = -9.1 V.
17-03-17 18:01:45.758 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35889 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35889 (-170.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35883 (-170.0 uncal um), Max = 35896 (-170.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:01:45.758 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35889, posNoise = 7, negNoise = 6
17-03-17 18:01:45.758 -07 000000610 INF: Z Motor: After move to -0.170858, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:01:45.758 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:01:45.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:01:45.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:01:45.758 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:01:45.758 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:01:45.758 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:01:45.758 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:01:45.758 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:01:45.758 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:01:45.758 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:01:45.758 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:01:45.758 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:01:45.758 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:01:45.768 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:01:45.768 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:01:45.768 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:01:45.768 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:01:45.778 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:01:45.778 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:01:45.788 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:01:45.788 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:01:45.788 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37501 150\n [Camera]
17-03-17 18:01:45.988 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:01:46.378 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 18:01:46.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 18:01:46.378 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:01:46.378 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 18:01:46.378 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:01:46.378 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1053954096, 0x0, 391868352) start.
17-03-17 18:01:46.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 18:01:46.388 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:01:46.388 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:01:46.388 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1089376360, 0x0, 418435064) start.
17-03-17 18:01:46.548 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:01:46.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:01:46.568 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37501 776
17-03-17 18:01:46.718 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:01:46.778 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1053954096, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:01:46.778 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:01:46.778 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:46.778 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:01:46.778 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:01:46.788 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1089376360, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 18:01:46.788 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:01:46.788 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:46.788 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:01:46.798 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:01:46.908 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:01:46.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:01:46.908 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:01:46.908 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:01:46.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:01:46.908 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:01:46.918 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:01:46.918 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1124798624, 0x0, 391868352) start.
17-03-17 18:01:46.918 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:01:46.918 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:01:47.098 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:01:47.098 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:01:47.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37501 150' command took 2 ms to send, 1305 ms to get response, and 1313 ms overall
17-03-17 18:01:47.098 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:01:47.098 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.170881901566794. ------
17-03-17 18:01:47.108 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17700 mm
17-03-17 18:01:47.108 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:01:47.228 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:01:47.228 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:01:47.228 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 38666, sync = True, waitForSettling = False)
17-03-17 18:01:47.228 -07 000000458 INF: Z Motor: Moving to -0.177002 mm, started at -0.170882 mm, distance = -6.12 um
17-03-17 18:01:47.228 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 18:01:47.228 -07 000000486 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 18:01:47.238 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:01:47.238 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:01:47.238 -07 000000627 INF: FPGA: Recv YRDPOS 129484
17-03-17 18:01:47.248 -07 000000458 INF: FPGA: Xmit ZDACW 38666\n [Z Motor]
17-03-17 18:01:47.248 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:01:47.248 -07 000000486 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:01:47.248 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 18:01:47.248 -07 000000486 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:01:47.248 -07 000000486 INF: Y Motor: Moving 1341 steps-17
17-03-17 18:01:47.258 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:01:47.258 -07 000000458 INF: FPGA: 'ZDACW 38666' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:01:47.268 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:01:47.278 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:01:47.278 -07 000000541 INF: FPGA: Recv ZDACR 38666
17-03-17 18:01:47.288 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:01:47.288 -07 000000458 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 18:01:47.308 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1124798624, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 18:01:47.308 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:01:47.308 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:47.308 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 18:01:47.308 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:01:47.308 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:47.318 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:01:47.318 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 18:01:47.318 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:01:47.328 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 18:01:47.458 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:01:47.458 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:01:47.638 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 18:01:47.638 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 18:01:47.668 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:01:47.678 -07 000000433 INF: FPGA: Recv YRDPOS 131188
17-03-17 18:01:47.678 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:01:47.678 -07 000000486 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:01:47.678 -07 000000486 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-17 18:01:47.678 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.838 mm, average velocity = 2.134 mm/sec
17-03-17 18:01:48.628 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:01:48.628 -07 000000433 INF: FPGA: Recv YRDPOS 131189
17-03-17 18:01:48.638 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:48.638 -07 000000486 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:01:48.648 -07 000000486 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:01:48.648 -07 000000486 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:01:48.648 -07 000000486 INF: Y Motor: Moved to 64.0571 after 1419 ms (table move)
17-03-17 18:01:48.658 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177002 mm (DAC = 38666)
17-03-17 18:01:48.668 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:48.668 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 4.012614,
17-03-17 18:01:48.668 -07 000000458 INF: FPGA: Recv ZSGSRD 36838
17-03-17 18:01:48.678 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:01:48.698 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:48.698 -07 000000541 INF: FPGA: Recv ZSGSRD 36846
17-03-17 18:01:48.708 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:01:48.728 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:48.728 -07 000000593 INF: FPGA: Recv ZSGSRD 36845
17-03-17 18:01:48.738 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:01:48.738 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:48.738 -07 000000561 INF: FPGA: Recv ZSGSRD 36835
17-03-17 18:01:48.748 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:48.748 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:48.748 -07 000000486 INF: FPGA: Recv ZSGSRD 36836
17-03-17 18:01:48.758 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:48.768 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:48.768 -07 000000593 INF: FPGA: Recv ZSGSRD 36846
17-03-17 18:01:48.778 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:01:48.778 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:48.778 -07 000000486 INF: FPGA: Recv ZSGSRD 36844
17-03-17 18:01:48.788 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:48.788 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:48.788 -07 000000627 INF: FPGA: Recv ZSGSRD 36848
17-03-17 18:01:48.798 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:48.798 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:48.798 -07 000000433 INF: FPGA: Recv ZSGSRD 36850
17-03-17 18:01:48.808 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:48.808 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:48.808 -07 000000627 INF: FPGA: Recv ZSGSRD 36842
17-03-17 18:01:48.818 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:48.818 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:01:48.818 -07 000000486 INF: FPGA: Recv ZPIEZORD 33006
17-03-17 18:01:48.828 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:48.828 -07 000000480 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.900 V. Piezo Error = -8.5 V.
17-03-17 18:01:48.828 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36843 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36844 (-176.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36835 (-176.1 uncal um), Max = 36850 (-176.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:01:48.828 -07 000000480 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36843, posNoise = 7, negNoise = 8
17-03-17 18:01:48.828 -07 000000480 INF: Z Motor: After move to -0.177002, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:01:48.828 -07 000000480 INF: Z Motor: Settle wait time = 1425 ms, measure time = 168 ms (allowed 150 ms), total time = 1593 ms
17-03-17 18:01:48.828 -07 000000480 INF: Z Motor: Warning: Actual position measuring time = 168 ms, longer than max expected time of 150 ms
17-03-17 18:01:48.828 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1720 ms
17-03-17 18:01:48.828 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:01:48.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:01:48.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:01:48.828 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:01:48.828 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:01:48.828 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:01:48.828 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:01:48.838 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:01:48.838 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:01:48.838 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:01:48.838 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:01:48.848 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:01:48.848 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 18:01:48.848 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:01:48.898 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:01:49.098 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:01:49.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:01:49.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:01:49.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:01:49.128 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:01:49.138 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 18:01:49.138 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:01:49.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:01:49.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:49.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:01:49.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:01:49.238 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:01:49.238 -07 000000627 INF: Autofocus start
17-03-17 18:01:49.238 -07 000000627 INF: MeasureProfile start
17-03-17 18:01:49.238 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:01:49.248 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:01:49.248 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:01:49.248 -07 000000627 INF: MeasureProfile done
17-03-17 18:01:49.248 -07 000000627 INF: X=80  Z correction [um]=0.337546
17-03-17 18:01:49.248 -07 000000627 INF: Autofocus finished
17-03-17 18:01:49.448 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:01:49.448 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:01:49.448 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.177010599950034. ----------
17-03-17 18:01:49.448 -07 000000610 INF: Cycle	8	Tile	6	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:01:49.458 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37252, sync = True, waitForSettling = True)
17-03-17 18:01:49.458 -07 000000610 INF: Z Motor: Moving to -0.170529 mm, started at -0.177011 mm, distance = 6.48 um
17-03-17 18:01:49.458 -07 000000610 INF: FPGA: Xmit ZDACW 37252\n [Z Motor]
17-03-17 18:01:49.458 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 18:01:49.468 -07 000000610 INF: FPGA: 'ZDACW 37252' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:01:49.468 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:01:49.468 -07 000000541 INF: FPGA: Recv ZDACR 37252
17-03-17 18:01:49.478 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:49.478 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:01:49.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:49.628 -07 000000541 INF: FPGA: Recv ZSGSRD 35840
17-03-17 18:01:49.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:01:49.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:49.638 -07 000000433 INF: FPGA: Recv ZSGSRD 35844
17-03-17 18:01:49.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:49.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:49.648 -07 000000541 INF: FPGA: Recv ZSGSRD 35833
17-03-17 18:01:49.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:49.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:49.658 -07 000000433 INF: FPGA: Recv ZSGSRD 35828
17-03-17 18:01:49.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:49.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:49.668 -07 000000541 INF: FPGA: Recv ZSGSRD 35838
17-03-17 18:01:49.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:49.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:49.678 -07 000000593 INF: FPGA: Recv ZSGSRD 35839
17-03-17 18:01:49.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:49.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:49.688 -07 000000433 INF: FPGA: Recv ZSGSRD 35832
17-03-17 18:01:49.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:49.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:49.698 -07 000000593 INF: FPGA: Recv ZSGSRD 35837
17-03-17 18:01:49.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:49.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:49.708 -07 000000433 INF: FPGA: Recv ZSGSRD 35839
17-03-17 18:01:49.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:49.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:49.718 -07 000000593 INF: FPGA: Recv ZSGSRD 35838
17-03-17 18:01:49.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:49.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:01:49.728 -07 000000593 INF: FPGA: Recv ZPIEZORD 31661
17-03-17 18:01:49.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:49.738 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.684 V. Piezo Error = -9.2 V.
17-03-17 18:01:49.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35837 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35838 (-169.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35828 (-169.6 uncal um), Max = 35844 (-169.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:01:49.738 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35837, posNoise = 7, negNoise = 9
17-03-17 18:01:49.738 -07 000000610 INF: Z Motor: After move to -0.170529, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:01:49.738 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:01:49.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:01:49.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:01:49.738 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:01:49.738 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:01:49.738 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:01:49.738 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:01:49.738 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:01:49.738 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:01:49.738 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:01:49.738 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:01:49.738 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:01:49.738 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:01:49.748 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:01:49.748 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:01:49.748 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:01:49.748 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:01:49.758 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:01:49.758 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:01:49.758 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:01:49.758 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:01:49.758 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37429 150\n [Camera]
17-03-17 18:01:49.958 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:01:50.348 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:01:50.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:01:50.358 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:01:50.358 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:01:50.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:01:50.358 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:01:50.358 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:01:50.358 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1053954096, 0x0, 391868352) start.
17-03-17 18:01:50.358 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:01:50.358 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1089376360, 0x0, 418435064) start.
17-03-17 18:01:50.548 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37429 776
17-03-17 18:01:50.698 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:01:50.758 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1053954096, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 18:01:50.758 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:01:50.758 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:50.758 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1089376360, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 18:01:50.758 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:01:50.758 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:50.758 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:01:50.758 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 18:01:50.758 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:01:50.768 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 18:01:50.888 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:01:50.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:01:50.888 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:01:50.888 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:01:50.888 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:01:50.888 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:01:50.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:01:50.888 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:01:50.888 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:01:50.888 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2181237920, 0x0, 418435064) start.
17-03-17 18:01:51.078 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 18:01:51.078 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:01:51.078 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37429 150' command took 2 ms to send, 1304 ms to get response, and 1315 ms overall
17-03-17 18:01:51.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:01:51.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.170547842535422. ------
17-03-17 18:01:51.088 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:01:51.088 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17696 mm
17-03-17 18:01:51.088 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:01:51.088 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 18:01:51.088 -07 000000486 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 18:01:51.088 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 38657, sync = True, waitForSettling = False)
17-03-17 18:01:51.088 -07 000000627 INF: Z Motor: Moving to -0.176960 mm, started at -0.170548 mm, distance = -6.41 um
17-03-17 18:01:51.088 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:01:51.098 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:51.098 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:01:51.098 -07 000000626 INF: FPGA: Recv YRDPOS 131189
17-03-17 18:01:51.108 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:01:51.108 -07 000000627 INF: FPGA: Xmit ZDACW 38657\n [Z Motor]
17-03-17 18:01:51.108 -07 000000486 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:01:51.108 -07 000000486 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:01:51.108 -07 000000486 INF: Y Motor: Moving 1337 steps-12
17-03-17 18:01:51.108 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 18:01:51.118 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:01:51.118 -07 000000627 INF: FPGA: 'ZDACW 38657' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:01:51.128 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:01:51.138 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:01:51.138 -07 000000626 INF: FPGA: Recv ZDACR 38657
17-03-17 18:01:51.148 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:01:51.148 -07 000000627 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 18:01:51.288 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 18:01:51.288 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:01:51.288 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:51.288 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2181237920, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 18:01:51.288 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 18:01:51.288 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:51.298 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:01:51.298 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:01:51.298 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 18:01:51.298 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 18:01:51.318 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:01:51.318 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:01:51.498 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 18:01:51.498 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:01:51.528 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:01:51.538 -07 000000627 INF: FPGA: Recv YRDPOS 132872
17-03-17 18:01:51.538 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:01:51.538 -07 000000486 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:01:51.538 -07 000000486 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:01:51.538 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-17 18:01:51.548 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:01:51.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:01:52.488 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:01:52.488 -07 000000593 INF: FPGA: Recv YRDPOS 132872
17-03-17 18:01:52.498 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:01:52.498 -07 000000486 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:01:52.508 -07 000000486 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:01:52.508 -07 000000486 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:01:52.508 -07 000000486 INF: Y Motor: Moved to 64.8789 after 1425 ms (table move)
17-03-17 18:01:52.518 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176960 mm (DAC = 38657)
17-03-17 18:01:52.518 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:52.518 -07 000000626 INF: FPGA: Recv ZSGSRD 36832
17-03-17 18:01:52.528 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:01:52.528 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:52.528 -07 000000593 INF: FPGA: Recv ZSGSRD 36832
17-03-17 18:01:52.538 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:52.538 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:52.538 -07 000000458 INF: FPGA: Recv ZSGSRD 36827
17-03-17 18:01:52.548 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:52.548 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:52.548 -07 000000593 INF: FPGA: Recv ZSGSRD 36836
17-03-17 18:01:52.558 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:52.558 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:52.558 -07 000000458 INF: FPGA: Recv ZSGSRD 36829
17-03-17 18:01:52.568 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:52.568 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:52.568 -07 000000409 INF: FPGA: Recv ZSGSRD 36850
17-03-17 18:01:52.578 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:52.578 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:52.578 -07 000000626 INF: FPGA: Recv ZSGSRD 36840
17-03-17 18:01:52.588 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:52.588 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:52.588 -07 000000541 INF: FPGA: Recv ZSGSRD 36841
17-03-17 18:01:52.598 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:52.598 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:52.598 -07 000000593 INF: FPGA: Recv ZSGSRD 36838
17-03-17 18:01:52.608 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:52.608 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:52.608 -07 000000541 INF: FPGA: Recv ZSGSRD 36828
17-03-17 18:01:52.618 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:52.618 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:01:52.618 -07 000000486 INF: FPGA: Recv ZPIEZORD 33035
17-03-17 18:01:52.628 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:52.628 -07 000000433 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.899 V. Piezo Error = -8.4 V.
17-03-17 18:01:52.628 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36835 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36834 (-176.1 uncal um), StdDev = 7 (0.0 uncal um), Range = 23 (0.1 uncal um), Min = 36827 (-176.0 uncal um), Max = 36850 (-176.2 uncal um), Pos Noise = 15 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:01:52.628 -07 000000433 INF: Z Motor: ADC noise = 15, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36835, posNoise = 15, negNoise = 8
17-03-17 18:01:52.628 -07 000000433 INF: Z Motor: After move to -0.176960, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:01:52.628 -07 000000433 INF: Z Motor: Settle wait time = 1429 ms, measure time = 106 ms (allowed 150 ms), total time = 1535 ms
17-03-17 18:01:52.628 -07 000000433 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:01:52.678 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1588 ms
17-03-17 18:01:52.678 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:01:52.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:01:52.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:01:52.678 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:01:52.678 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:01:52.678 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:01:52.678 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:01:52.688 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:01:52.688 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:01:52.688 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:01:52.688 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:01:52.698 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:01:52.698 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 18:01:52.708 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:01:52.748 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:01:52.948 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:01:52.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:01:52.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:01:52.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-17 18:01:52.988 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:01:52.988 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 18:01:52.988 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 287 ms overall
17-03-17 18:01:53.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:01:53.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:53.078 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:01:53.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 18:01:53.088 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:01:53.088 -07 000000458 INF: Autofocus start
17-03-17 18:01:53.088 -07 000000458 INF: MeasureProfile start
17-03-17 18:01:53.088 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:01:53.098 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:01:53.098 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:01:53.098 -07 000000458 INF: MeasureProfile done
17-03-17 18:01:53.098 -07 000000458 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:01:53.098 -07 000000458 INF: Autofocus finished
17-03-17 18:01:53.298 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:01:53.298 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:01:53.298 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.1769592062529. ----------
17-03-17 18:01:53.298 -07 000000610 INF: Cycle	8	Tile	7	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:01:53.308 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37172, sync = True, waitForSettling = True)
17-03-17 18:01:53.308 -07 000000610 INF: Z Motor: Moving to -0.170163 mm, started at -0.176959 mm, distance = 6.80 um
17-03-17 18:01:53.308 -07 000000610 INF: FPGA: Xmit ZDACW 37172\n [Z Motor]
17-03-17 18:01:53.308 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 18:01:53.318 -07 000000610 INF: FPGA: 'ZDACW 37172' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:01:53.318 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:01:53.318 -07 000000409 INF: FPGA: Recv ZDACR 37172
17-03-17 18:01:53.328 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:53.328 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:01:53.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:53.478 -07 000000626 INF: FPGA: Recv ZSGSRD 35782
17-03-17 18:01:53.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:53.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:53.488 -07 000000626 INF: FPGA: Recv ZSGSRD 35782
17-03-17 18:01:53.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:53.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:53.498 -07 000000626 INF: FPGA: Recv ZSGSRD 35778
17-03-17 18:01:53.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:53.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:53.508 -07 000000626 INF: FPGA: Recv ZSGSRD 35779
17-03-17 18:01:53.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:53.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:53.518 -07 000000626 INF: FPGA: Recv ZSGSRD 35781
17-03-17 18:01:53.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:53.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:53.528 -07 000000409 INF: FPGA: Recv ZSGSRD 35777
17-03-17 18:01:53.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:53.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:53.538 -07 000000409 INF: FPGA: Recv ZSGSRD 35781
17-03-17 18:01:53.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:53.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:53.548 -07 000000409 INF: FPGA: Recv ZSGSRD 35774
17-03-17 18:01:53.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:53.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:53.558 -07 000000409 INF: FPGA: Recv ZSGSRD 35780
17-03-17 18:01:53.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:53.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:53.568 -07 000000626 INF: FPGA: Recv ZSGSRD 35783
17-03-17 18:01:53.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:53.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:01:53.578 -07 000000626 INF: FPGA: Recv ZPIEZORD 31578
17-03-17 18:01:53.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:53.588 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.672 V. Piezo Error = -9.3 V.
17-03-17 18:01:53.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35780 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35780 (-169.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35774 (-169.3 uncal um), Max = 35783 (-169.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:01:53.588 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35780, posNoise = 3, negNoise = 6
17-03-17 18:01:53.588 -07 000000610 INF: Z Motor: After move to -0.170163, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:01:53.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:01:53.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:01:53.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:01:53.588 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:01:53.588 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:01:53.588 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:01:53.588 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:01:53.588 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:01:53.588 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:01:53.588 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:01:53.588 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:01:53.588 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:01:53.588 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:01:53.598 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:01:53.598 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:01:53.598 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:01:53.598 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:01:53.608 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:01:53.608 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:01:53.608 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:01:53.608 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:01:53.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37348 150\n [Camera]
17-03-17 18:01:53.808 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:01:54.048 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 4.019446,
17-03-17 18:01:54.208 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:01:54.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:01:54.208 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:01:54.208 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:01:54.208 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2221065488, 0x0, 391868352) start.
17-03-17 18:01:54.208 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:01:54.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:01:54.248 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:01:54.248 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:01:54.248 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 18:01:54.398 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37348 776
17-03-17 18:01:54.548 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:01:54.608 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2221065488, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 18:01:54.608 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:01:54.608 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:54.608 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:01:54.608 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:01:54.648 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 18:01:54.648 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:01:54.648 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:54.648 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:01:54.658 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 18:01:54.738 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:01:54.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:01:54.738 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:01:54.738 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:01:54.738 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 18:01:54.738 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:01:54.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:01:54.738 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:01:54.738 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:01:54.738 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:01:54.928 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:01:54.928 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:01:54.928 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37348 150' command took 2 ms to send, 1303 ms to get response, and 1314 ms overall
17-03-17 18:01:54.928 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:01:54.928 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.170181662443342. ------
17-03-17 18:01:55.058 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17668 mm
17-03-17 18:01:55.058 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:01:55.058 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:01:55.058 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:01:55.068 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:01:55.068 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:01:55.068 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 38597, sync = True, waitForSettling = False)
17-03-17 18:01:55.068 -07 000000433 INF: Z Motor: Moving to -0.176686 mm, started at -0.170182 mm, distance = -6.50 um
17-03-17 18:01:55.068 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 18:01:55.068 -07 000000626 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 18:01:55.078 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:01:55.078 -07 000000458 INF: FPGA: Recv YRDPOS 132872
17-03-17 18:01:55.088 -07 000000433 INF: FPGA: Xmit ZDACW 38597\n [Z Motor]
17-03-17 18:01:55.088 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:01:55.088 -07 000000626 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:01:55.088 -07 000000626 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:01:55.088 -07 000000626 INF: Y Motor: Moving 1350 steps-28
17-03-17 18:01:55.088 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 18:01:55.098 -07 000000433 INF: FPGA: 'ZDACW 38597' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:01:55.098 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:01:55.098 -07 000000627 INF: FPGA: Recv ZDACR 38597
17-03-17 18:01:55.108 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:01:55.108 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:55.108 -07 000000433 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 18:01:55.138 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 18:01:55.138 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:01:55.138 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:55.138 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:01:55.138 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:01:55.138 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:55.138 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:01:55.148 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:01:55.148 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 18:01:55.148 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 18:01:55.268 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:01:55.268 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:01:55.478 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 18:01:55.478 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:01:55.508 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:01:55.518 -07 000000561 INF: FPGA: Recv YRDPOS 134582
17-03-17 18:01:55.528 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:01:55.528 -07 000000626 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:01:55.528 -07 000000626 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 18:01:55.528 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 18:01:56.478 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:01:56.478 -07 000000475 INF: FPGA: Recv YRDPOS 134583
17-03-17 18:01:56.488 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:01:56.488 -07 000000626 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:01:56.508 -07 000000626 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:01:56.508 -07 000000626 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:01:56.508 -07 000000626 INF: Y Motor: Moved to 65.7144 after 1442 ms (table move)
17-03-17 18:01:56.508 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176686 mm (DAC = 38597)
17-03-17 18:01:56.508 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:56.518 -07 000000561 INF: FPGA: Recv ZSGSRD 36793
17-03-17 18:01:56.518 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:01:56.518 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:56.518 -07 000000475 INF: FPGA: Recv ZSGSRD 36792
17-03-17 18:01:56.528 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:56.528 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:56.528 -07 000000561 INF: FPGA: Recv ZSGSRD 36791
17-03-17 18:01:56.538 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:56.538 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:56.538 -07 000000486 INF: FPGA: Recv ZSGSRD 36796
17-03-17 18:01:56.548 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:56.548 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:56.548 -07 000000561 INF: FPGA: Recv ZSGSRD 36795
17-03-17 18:01:56.548 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:01:56.558 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:56.558 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:56.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:01:56.558 -07 000000593 INF: FPGA: Recv ZSGSRD 36797
17-03-17 18:01:56.568 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:56.568 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:56.568 -07 000000541 INF: FPGA: Recv ZSGSRD 36797
17-03-17 18:01:56.578 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:56.578 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:56.578 -07 000000593 INF: FPGA: Recv ZSGSRD 36798
17-03-17 18:01:56.588 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:56.588 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:56.588 -07 000000593 INF: FPGA: Recv ZSGSRD 36790
17-03-17 18:01:56.598 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:56.598 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:56.598 -07 000000541 INF: FPGA: Recv ZSGSRD 36791
17-03-17 18:01:56.608 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:56.608 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:01:56.608 -07 000000541 INF: FPGA: Recv ZPIEZORD 33005
17-03-17 18:01:56.618 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:56.618 -07 000000480 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.890 V. Piezo Error = -8.4 V.
17-03-17 18:01:56.618 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.7 um, Read 10 ADC samples: Avg = 36794 (-175.8 uncal um), Error = 0.9 uncal um, Median = 36794 (-175.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36790 (-175.8 uncal um), Max = 36798 (-175.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:01:56.618 -07 000000480 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36794, posNoise = 4, negNoise = 4
17-03-17 18:01:56.618 -07 000000480 INF: Z Motor: After move to -0.176686, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:01:56.618 -07 000000480 INF: Z Motor: Settle wait time = 1446 ms, measure time = 105 ms (allowed 150 ms), total time = 1551 ms
17-03-17 18:01:56.618 -07 000000480 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:01:56.668 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 18:01:56.668 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:01:56.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:01:56.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:01:56.668 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:01:56.668 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:01:56.668 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:01:56.668 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:01:56.668 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:01:56.668 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:01:56.678 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:01:56.678 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:01:56.678 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:01:56.678 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:01:56.688 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:01:56.738 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:01:56.938 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:01:56.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:01:56.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:01:56.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:01:56.968 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:01:56.978 -07 000000409 INF: FPGA: Recv CAMSNAP
17-03-17 18:01:56.978 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 288 ms overall
17-03-17 18:01:57.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 18:01:57.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:57.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:01:57.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 18:01:57.078 -07 000000486 INF: Autofocus start
17-03-17 18:01:57.078 -07 000000486 INF: MeasureProfile start
17-03-17 18:01:57.078 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:01:57.078 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:01:57.088 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:01:57.088 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:01:57.098 -07 000000486 INF: MeasureProfile done
17-03-17 18:01:57.098 -07 000000486 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:01:57.098 -07 000000486 INF: Autofocus finished
17-03-17 18:01:57.288 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:01:57.288 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:01:57.288 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.176695813555088. ----------
17-03-17 18:01:57.288 -07 000000610 INF: Cycle	8	Tile	8	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:01:57.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37094, sync = True, waitForSettling = True)
17-03-17 18:01:57.298 -07 000000610 INF: Z Motor: Moving to -0.169805 mm, started at -0.176696 mm, distance = 6.89 um
17-03-17 18:01:57.298 -07 000000610 INF: FPGA: Xmit ZDACW 37094\n [Z Motor]
17-03-17 18:01:57.298 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 18:01:57.308 -07 000000610 INF: FPGA: 'ZDACW 37094' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:57.308 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:01:57.308 -07 000000561 INF: FPGA: Recv ZDACR 37094
17-03-17 18:01:57.318 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:57.318 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:01:57.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:57.468 -07 000000626 INF: FPGA: Recv ZSGSRD 35722
17-03-17 18:01:57.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:01:57.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:57.478 -07 000000626 INF: FPGA: Recv ZSGSRD 35717
17-03-17 18:01:57.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:57.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:57.488 -07 000000626 INF: FPGA: Recv ZSGSRD 35720
17-03-17 18:01:57.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:57.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:57.498 -07 000000409 INF: FPGA: Recv ZSGSRD 35719
17-03-17 18:01:57.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:57.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:57.508 -07 000000409 INF: FPGA: Recv ZSGSRD 35731
17-03-17 18:01:57.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:57.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:57.518 -07 000000409 INF: FPGA: Recv ZSGSRD 35720
17-03-17 18:01:57.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:57.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:57.528 -07 000000626 INF: FPGA: Recv ZSGSRD 35721
17-03-17 18:01:57.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:57.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:57.538 -07 000000626 INF: FPGA: Recv ZSGSRD 35723
17-03-17 18:01:57.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:57.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:57.548 -07 000000626 INF: FPGA: Recv ZSGSRD 35722
17-03-17 18:01:57.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:57.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:01:57.558 -07 000000626 INF: FPGA: Recv ZSGSRD 35720
17-03-17 18:01:57.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:57.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:01:57.568 -07 000000475 INF: FPGA: Recv ZPIEZORD 31557
17-03-17 18:01:57.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:01:57.578 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.660 V. Piezo Error = -9.2 V.
17-03-17 18:01:57.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35722 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35720 (-168.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35717 (-168.9 uncal um), Max = 35731 (-169.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:01:57.578 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35722, posNoise = 9, negNoise = 5
17-03-17 18:01:57.578 -07 000000610 INF: Z Motor: After move to -0.169805, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:01:57.578 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:01:57.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:01:57.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:01:57.578 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:01:57.578 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:01:57.578 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:01:57.578 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:01:57.578 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:01:57.578 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:01:57.578 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:01:57.578 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:01:57.578 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:01:57.578 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:01:57.578 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:01:57.578 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:01:57.578 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:01:57.588 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:01:57.588 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:01:57.588 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 18:01:57.598 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:01:57.598 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:01:57.598 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37270 150\n [Camera]
17-03-17 18:01:57.798 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:01:58.188 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:01:58.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:01:58.188 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:01:58.198 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:01:58.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:01:58.198 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:01:58.198 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:01:58.198 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2181237920, 0x0, 391868352) start.
17-03-17 18:01:58.208 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:01:58.208 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) start.
17-03-17 18:01:58.378 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37270 776
17-03-17 18:01:58.528 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:01:58.578 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2181237920, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 18:01:58.578 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 18:01:58.578 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:58.578 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 18:01:58.578 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 18:01:58.578 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:58.578 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:01:58.578 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:01:58.578 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:01:58.588 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:01:58.718 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:01:58.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:01:58.718 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:01:58.718 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:01:58.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:01:58.718 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:01:58.728 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:01:58.728 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:01:58.728 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:01:58.738 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:01:58.908 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:01:58.908 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:01:58.908 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37270 150' command took 2 ms to send, 1307 ms to get response, and 1313 ms overall
17-03-17 18:01:59.038 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:01:59.038 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.16980905813912. ------
17-03-17 18:01:59.038 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:01:59.038 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17620 mm
17-03-17 18:01:59.038 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:01:59.048 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:01:59.048 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:01:59.048 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 38490, sync = True, waitForSettling = False)
17-03-17 18:01:59.048 -07 000000541 INF: Z Motor: Moving to -0.176196 mm, started at -0.169809 mm, distance = -6.39 um
17-03-17 18:01:59.048 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 18:01:59.048 -07 000000486 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 18:01:59.048 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:01:59.058 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:01:59.058 -07 000000409 INF: FPGA: Recv YRDPOS 134583
17-03-17 18:01:59.068 -07 000000541 INF: FPGA: Xmit ZDACW 38490\n [Z Motor]
17-03-17 18:01:59.068 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:01:59.068 -07 000000486 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:01:59.068 -07 000000486 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:01:59.068 -07 000000486 INF: Y Motor: Moving 1341 steps-18
17-03-17 18:01:59.068 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 18:01:59.078 -07 000000541 INF: FPGA: 'ZDACW 38490' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:01:59.078 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:01:59.098 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:01:59.098 -07 000000593 INF: FPGA: Recv ZDACR 38490
17-03-17 18:01:59.108 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:01:59.108 -07 000000541 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 18:01:59.108 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:01:59.108 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:01:59.118 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:59.118 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:01:59.118 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 18:01:59.118 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:01:59.118 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:01:59.118 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:01:59.118 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:01:59.128 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:01:59.248 -07 000000409 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:01:59.248 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 197 ms to get response, and 203 ms overall
17-03-17 18:01:59.408 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 4.011254,
17-03-17 18:01:59.448 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 18:01:59.458 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-17 18:01:59.488 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:01:59.488 -07 000000433 INF: FPGA: Recv YRDPOS 136272
17-03-17 18:01:59.498 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:01:59.498 -07 000000486 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:01:59.498 -07 000000486 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:01:59.498 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.838 mm, average velocity = 2.155 mm/sec
17-03-17 18:02:00.448 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:00.448 -07 000000475 INF: FPGA: Recv YRDPOS 136272
17-03-17 18:02:00.458 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:02:00.458 -07 000000486 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:00.478 -07 000000486 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:02:00.478 -07 000000486 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:02:00.478 -07 000000486 INF: Y Motor: Moved to 66.5391 after 1427 ms (table move)
17-03-17 18:02:00.478 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176196 mm (DAC = 38490)
17-03-17 18:02:00.478 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:00.478 -07 000000561 INF: FPGA: Recv ZSGSRD 36721
17-03-17 18:02:00.488 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:02:00.488 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:00.488 -07 000000593 INF: FPGA: Recv ZSGSRD 36720
17-03-17 18:02:00.498 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:00.498 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:00.498 -07 000000561 INF: FPGA: Recv ZSGSRD 36720
17-03-17 18:02:00.508 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:00.508 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:00.508 -07 000000627 INF: FPGA: Recv ZSGSRD 36723
17-03-17 18:02:00.518 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:02:00.518 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:00.518 -07 000000486 INF: FPGA: Recv ZSGSRD 36715
17-03-17 18:02:00.528 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:00.528 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:00.528 -07 000000626 INF: FPGA: Recv ZSGSRD 36706
17-03-17 18:02:00.538 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:00.538 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:00.538 -07 000000626 INF: FPGA: Recv ZSGSRD 36716
17-03-17 18:02:00.548 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:00.548 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:00.548 -07 000000486 INF: FPGA: Recv ZSGSRD 36715
17-03-17 18:02:00.558 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:00.558 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:00.558 -07 000000593 INF: FPGA: Recv ZSGSRD 36720
17-03-17 18:02:00.568 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:00.568 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:00.568 -07 000000486 INF: FPGA: Recv ZSGSRD 36723
17-03-17 18:02:00.578 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:00.578 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:02:00.578 -07 000000486 INF: FPGA: Recv ZPIEZORD 32891
17-03-17 18:02:00.588 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:00.588 -07 000000480 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.873 V. Piezo Error = -8.5 V.
17-03-17 18:02:00.588 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36718 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36720 (-175.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36706 (-175.2 uncal um), Max = 36723 (-175.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 18:02:00.588 -07 000000480 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36718, posNoise = 5, negNoise = 12
17-03-17 18:02:00.588 -07 000000480 INF: Z Motor: After move to -0.176196, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:02:00.588 -07 000000480 INF: Z Motor: Settle wait time = 1431 ms, measure time = 106 ms (allowed 150 ms), total time = 1537 ms
17-03-17 18:02:00.588 -07 000000480 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:02:00.638 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 18:02:00.638 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:02:00.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:02:00.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:02:00.638 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:02:00.638 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:02:00.638 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:02:00.638 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:02:00.638 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:02:00.638 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:02:00.638 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:02:00.638 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:02:00.658 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:02:00.658 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:02:00.658 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:02:00.708 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:02:00.908 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:02:00.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:02:00.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:02:00.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:02:00.948 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:02:00.948 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 18:02:00.948 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 18:02:01.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:02:01.018 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:01.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:02:01.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:02:01.048 -07 000000627 INF: Autofocus start
17-03-17 18:02:01.048 -07 000000627 INF: MeasureProfile start
17-03-17 18:02:01.048 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:02:01.058 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:02:01.058 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:02:01.058 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:02:01.068 -07 000000627 INF: MeasureProfile done
17-03-17 18:02:01.068 -07 000000627 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:02:01.068 -07 000000627 INF: Autofocus finished
17-03-17 18:02:01.258 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:02:01.258 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 18:02:01.258 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.176207573432314. ----------
17-03-17 18:02:01.268 -07 000000610 INF: Cycle	8	Tile	9	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:02:01.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37005, sync = True, waitForSettling = True)
17-03-17 18:02:01.268 -07 000000610 INF: Z Motor: Moving to -0.169398 mm, started at -0.176208 mm, distance = 6.81 um
17-03-17 18:02:01.268 -07 000000610 INF: FPGA: Xmit ZDACW 37005\n [Z Motor]
17-03-17 18:02:01.268 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 18:02:01.278 -07 000000610 INF: FPGA: 'ZDACW 37005' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:02:01.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:02:01.278 -07 000000627 INF: FPGA: Recv ZDACR 37005
17-03-17 18:02:01.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:01.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:02:01.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:01.438 -07 000000480 INF: FPGA: Recv ZSGSRD 35657
17-03-17 18:02:01.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:02:01.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:01.448 -07 000000480 INF: FPGA: Recv ZSGSRD 35655
17-03-17 18:02:01.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:01.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:01.458 -07 000000480 INF: FPGA: Recv ZSGSRD 35658
17-03-17 18:02:01.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:01.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:01.468 -07 000000480 INF: FPGA: Recv ZSGSRD 35658
17-03-17 18:02:01.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:01.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:01.478 -07 000000409 INF: FPGA: Recv ZSGSRD 35661
17-03-17 18:02:01.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:01.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:01.488 -07 000000409 INF: FPGA: Recv ZSGSRD 35667
17-03-17 18:02:01.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:01.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:01.498 -07 000000626 INF: FPGA: Recv ZSGSRD 35660
17-03-17 18:02:01.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:01.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:01.508 -07 000000409 INF: FPGA: Recv ZSGSRD 35650
17-03-17 18:02:01.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:01.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:01.518 -07 000000480 INF: FPGA: Recv ZSGSRD 35658
17-03-17 18:02:01.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:01.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:01.528 -07 000000480 INF: FPGA: Recv ZSGSRD 35658
17-03-17 18:02:01.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:01.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:02:01.538 -07 000000561 INF: FPGA: Recv ZPIEZORD 31498
17-03-17 18:02:01.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:01.548 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.647 V. Piezo Error = -9.2 V.
17-03-17 18:02:01.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35658 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35658 (-168.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35650 (-168.5 uncal um), Max = 35667 (-168.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:02:01.548 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35658, posNoise = 9, negNoise = 8
17-03-17 18:02:01.548 -07 000000610 INF: Z Motor: After move to -0.169398, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:02:01.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 18:02:01.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:02:01.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:02:01.548 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:02:01.548 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:02:01.548 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:02:01.548 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:02:01.548 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:02:01.548 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:02:01.548 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:02:01.548 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:02:01.548 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:02:01.548 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:02:01.548 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:02:01.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:02:01.558 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:02:01.558 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:02:01.558 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:02:01.558 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:02:01.568 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:02:01.568 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:02:01.568 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:02:01.568 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:02:01.568 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37182 150\n [Camera]
17-03-17 18:02:01.768 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:02:02.158 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:02:02.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:02:02.158 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:02:02.158 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:02:02.158 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:02:02.158 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:02:02.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:02:02.158 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:02:02.158 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:02:02.158 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2181237920, 0x0, 418435064) start.
17-03-17 18:02:02.348 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37182 776
17-03-17 18:02:02.498 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:02:02.538 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2181237920, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 18:02:02.538 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 18:02:02.538 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:02.538 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:02:02.538 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 18:02:02.538 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:02:02.538 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:02.538 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:02:02.538 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:02:02.548 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:02:02.688 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:02:02.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:02:02.688 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:02:02.688 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:02:02.688 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) start.
17-03-17 18:02:02.688 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:02:02.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:02:02.698 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:02:02.698 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:02:02.698 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 18:02:02.878 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:02:02.878 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:02:02.878 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37182 150' command took 2 ms to send, 1307 ms to get response, and 1314 ms overall
17-03-17 18:02:02.878 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:02:02.878 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.169397908562047. ------
17-03-17 18:02:02.888 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:02:02.888 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17624 mm
17-03-17 18:02:02.888 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:02:02.888 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:02:02.888 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 18:02:02.888 -07 000000409 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 18:02:02.888 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 38500, sync = True, waitForSettling = False)
17-03-17 18:02:02.888 -07 000000627 INF: Z Motor: Moving to -0.176242 mm, started at -0.169398 mm, distance = -6.84 um
17-03-17 18:02:02.898 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:02:02.898 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:02.898 -07 000000480 INF: FPGA: Recv YRDPOS 136273
17-03-17 18:02:02.908 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:02:02.908 -07 000000409 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:02.908 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:02:02.908 -07 000000409 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:02:02.908 -07 000000409 INF: Y Motor: Moving 1349 steps-28
17-03-17 18:02:02.918 -07 000000627 INF: FPGA: Xmit ZDACW 38500\n [Z Motor]
17-03-17 18:02:02.918 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 18:02:02.928 -07 000000627 INF: FPGA: 'ZDACW 38500' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 18:02:02.928 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:02:02.938 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:02:02.938 -07 000000541 INF: FPGA: Recv ZDACR 38500
17-03-17 18:02:02.948 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:02:02.948 -07 000000627 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 18:02:03.068 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:02:03.068 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:02:03.068 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:03.078 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 18:02:03.078 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:02:03.078 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:03.078 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 10 ms.
17-03-17 18:02:03.078 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:02:03.088 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:02:03.088 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:02:03.108 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:02:03.108 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 18:02:03.298 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 18:02:03.338 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 406 ms to get response, and 432 ms overall
17-03-17 18:02:03.368 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:03.378 -07 000000627 INF: FPGA: Recv YRDPOS 137978
17-03-17 18:02:03.378 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 6 ms to get response, and 6 ms overall
17-03-17 18:02:03.378 -07 000000409 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:03.378 -07 000000409 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 18:02:03.378 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 433 ms, distance = 0.844 mm, average velocity = 1.948 mm/sec
17-03-17 18:02:04.328 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:04.328 -07 000000458 INF: FPGA: Recv YRDPOS 137978
17-03-17 18:02:04.338 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:02:04.338 -07 000000409 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:04.358 -07 000000409 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:02:04.358 -07 000000409 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:02:04.358 -07 000000409 INF: Y Motor: Moved to 67.3721 after 1464 ms (table move)
17-03-17 18:02:04.358 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176242 mm (DAC = 38500)
17-03-17 18:02:04.358 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:04.358 -07 000000576 INF: FPGA: Recv ZSGSRD 36728
17-03-17 18:02:04.368 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:02:04.368 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:04.368 -07 000000409 INF: FPGA: Recv ZSGSRD 36728
17-03-17 18:02:04.378 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:04.378 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:04.378 -07 000000627 INF: FPGA: Recv ZSGSRD 36719
17-03-17 18:02:04.388 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:04.388 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:04.388 -07 000000458 INF: FPGA: Recv ZSGSRD 36724
17-03-17 18:02:04.398 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:04.398 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:04.398 -07 000000626 INF: FPGA: Recv ZSGSRD 36719
17-03-17 18:02:04.408 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:04.408 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:04.408 -07 000000541 INF: FPGA: Recv ZSGSRD 36719
17-03-17 18:02:04.418 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:04.418 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:04.418 -07 000000459 INF: FPGA: Recv ZSGSRD 36729
17-03-17 18:02:04.428 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:04.428 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:04.428 -07 000000593 INF: FPGA: Recv ZSGSRD 36724
17-03-17 18:02:04.438 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:04.438 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:04.438 -07 000000482 INF: FPGA: Recv ZSGSRD 36723
17-03-17 18:02:04.448 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:04.458 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:04.458 -07 000000541 INF: FPGA: Recv ZSGSRD 36725
17-03-17 18:02:04.468 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:02:04.468 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:02:04.468 -07 000000541 INF: FPGA: Recv ZPIEZORD 32941
17-03-17 18:02:04.478 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:04.478 -07 000000561 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.875 V. Piezo Error = -8.4 V.
17-03-17 18:02:04.478 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36724 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36724 (-175.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36719 (-175.3 uncal um), Max = 36729 (-175.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:02:04.478 -07 000000561 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36724, posNoise = 5, negNoise = 5
17-03-17 18:02:04.478 -07 000000561 INF: Z Motor: After move to -0.176242, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:02:04.478 -07 000000561 INF: Z Motor: Settle wait time = 1464 ms, measure time = 117 ms (allowed 150 ms), total time = 1581 ms
17-03-17 18:02:04.478 -07 000000561 INF: Z Motor: Waiting extra 33 ms after reading position to reach expected total of 150 ms
17-03-17 18:02:04.518 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-17 18:02:04.518 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:02:04.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:02:04.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:02:04.518 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:02:04.518 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:02:04.518 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:02:04.518 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:02:04.518 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:02:04.518 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:02:04.528 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:02:04.528 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:02:04.528 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:02:04.528 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:02:04.538 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:02:04.578 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 18:02:04.768 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 3.979922,
17-03-17 18:02:04.778 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 18:02:04.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 18:02:04.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:02:04.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-17 18:02:04.818 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:02:04.818 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 18:02:04.818 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 18:02:04.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 18:02:04.908 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:04.908 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:02:04.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 18:02:05.018 -07 000000458 INF: Autofocus start
17-03-17 18:02:05.018 -07 000000458 INF: MeasureProfile start
17-03-17 18:02:05.018 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:02:05.018 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:02:05.028 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:02:05.028 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:02:05.028 -07 000000458 INF: MeasureProfile done
17-03-17 18:02:05.028 -07 000000458 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:02:05.028 -07 000000458 INF: Autofocus finished
17-03-17 18:02:05.228 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:02:05.228 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:02:05.228 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.176246118705164. ----------
17-03-17 18:02:05.238 -07 000000610 INF: Cycle	8	Tile	10	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:02:05.238 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37014, sync = True, waitForSettling = True)
17-03-17 18:02:05.238 -07 000000610 INF: Z Motor: Moving to -0.169439 mm, started at -0.176246 mm, distance = 6.81 um
17-03-17 18:02:05.238 -07 000000610 INF: FPGA: Xmit ZDACW 37014\n [Z Motor]
17-03-17 18:02:05.238 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 18:02:05.248 -07 000000610 INF: FPGA: 'ZDACW 37014' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:02:05.248 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:02:05.248 -07 000000561 INF: FPGA: Recv ZDACR 37014
17-03-17 18:02:05.258 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:05.258 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:02:05.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:05.408 -07 000000561 INF: FPGA: Recv ZSGSRD 35665
17-03-17 18:02:05.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:02:05.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:05.418 -07 000000433 INF: FPGA: Recv ZSGSRD 35668
17-03-17 18:02:05.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:05.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:05.428 -07 000000433 INF: FPGA: Recv ZSGSRD 35667
17-03-17 18:02:05.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:05.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:05.438 -07 000000433 INF: FPGA: Recv ZSGSRD 35669
17-03-17 18:02:05.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:05.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:05.448 -07 000000433 INF: FPGA: Recv ZSGSRD 35661
17-03-17 18:02:05.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:05.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:05.458 -07 000000433 INF: FPGA: Recv ZSGSRD 35666
17-03-17 18:02:05.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:05.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:05.468 -07 000000433 INF: FPGA: Recv ZSGSRD 35669
17-03-17 18:02:05.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:05.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:05.478 -07 000000541 INF: FPGA: Recv ZSGSRD 35665
17-03-17 18:02:05.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:05.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:05.488 -07 000000458 INF: FPGA: Recv ZSGSRD 35661
17-03-17 18:02:05.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:05.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:05.498 -07 000000433 INF: FPGA: Recv ZSGSRD 35661
17-03-17 18:02:05.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:05.508 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:02:05.508 -07 000000433 INF: FPGA: Recv ZPIEZORD 31486
17-03-17 18:02:05.518 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:05.518 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.648 V. Piezo Error = -9.2 V.
17-03-17 18:02:05.518 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35665 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35666 (-168.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35661 (-168.5 uncal um), Max = 35669 (-168.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:02:05.518 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35665, posNoise = 4, negNoise = 4
17-03-17 18:02:05.518 -07 000000610 INF: Z Motor: After move to -0.169439, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:02:05.518 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:02:05.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:02:05.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:02:05.518 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:02:05.518 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:02:05.518 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:02:05.518 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:02:05.518 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:02:05.518 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:02:05.518 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:02:05.518 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:02:05.518 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:02:05.518 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:02:05.528 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:02:05.528 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:02:05.528 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:02:05.528 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:02:05.538 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:02:05.538 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:02:05.538 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:02:05.538 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:02:05.538 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37191 150\n [Camera]
17-03-17 18:02:05.738 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:02:06.138 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:02:06.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:02:06.138 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:02:06.138 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:02:06.138 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1049694256, 0x0, 391868352) start.
17-03-17 18:02:06.138 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:02:06.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:02:06.138 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:02:06.138 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:02:06.138 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1085116520, 0x0, 418435064) start.
17-03-17 18:02:06.328 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37191 776
17-03-17 18:02:06.478 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:02:06.528 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1049694256, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 18:02:06.528 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:02:06.528 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:06.528 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:02:06.528 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:02:06.528 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1085116520, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 18:02:06.538 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:02:06.538 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:06.538 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:02:06.548 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 18:02:06.558 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:02:06.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:02:06.668 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:02:06.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:02:06.668 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:02:06.668 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:02:06.668 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1120538784, 0x0, 391868352) start.
17-03-17 18:02:06.668 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:02:06.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:02:06.668 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:02:06.668 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:02:06.668 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:02:06.858 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:02:06.858 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:02:06.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37191 150' command took 2 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-17 18:02:06.858 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:02:06.858 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.169442878047039. ------
17-03-17 18:02:06.858 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17529 mm
17-03-17 18:02:06.858 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:02:06.858 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:02:06.988 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:02:06.988 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 129 ms overall
17-03-17 18:02:06.988 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:02:06.988 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 38292, sync = True, waitForSettling = False)
17-03-17 18:02:06.998 -07 000000576 INF: Z Motor: Moving to -0.175290 mm, started at -0.169443 mm, distance = -5.85 um
17-03-17 18:02:06.998 -07 000000576 INF: FPGA: Xmit ZDACW 38292\n [Z Motor]
17-03-17 18:02:06.998 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 18:02:06.998 -07 000000433 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 18:02:06.998 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 18:02:07.008 -07 000000576 INF: FPGA: 'ZDACW 38292' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:07.008 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:07.008 -07 000000476 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:02:07.018 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:02:07.018 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:02:07.018 -07 000000433 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:07.018 -07 000000475 INF: FPGA: Recv ZDACR 38292
17-03-17 18:02:07.018 -07 000000433 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:02:07.018 -07 000000433 INF: Y Motor: Moving 1344 steps-22
17-03-17 18:02:07.028 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:02:07.028 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:02:07.028 -07 000000576 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 18:02:07.058 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1120538784, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:02:07.058 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:02:07.058 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:07.058 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 18:02:07.058 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:02:07.058 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:07.068 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:02:07.068 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:02:07.068 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:02:07.068 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 18:02:07.198 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:02:07.198 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 201 ms to get response, and 203 ms overall
17-03-17 18:02:07.398 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 18:02:07.398 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 18:02:07.428 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:07.438 -07 000000551 INF: FPGA: Recv YRDPOS 139683
17-03-17 18:02:07.438 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:02:07.438 -07 000000433 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:07.438 -07 000000433 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 18:02:07.438 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.841 mm, average velocity = 2.183 mm/sec
17-03-17 18:02:08.388 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:08.388 -07 000000561 INF: FPGA: Recv YRDPOS 139684
17-03-17 18:02:08.398 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:02:08.398 -07 000000433 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:08.408 -07 000000433 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:02:08.408 -07 000000433 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:02:08.408 -07 000000433 INF: Y Motor: Moved to 68.2051 after 1417 ms (table move)
17-03-17 18:02:08.418 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175290 mm (DAC = 38292)
17-03-17 18:02:08.418 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:08.418 -07 000000627 INF: FPGA: Recv ZSGSRD 36581
17-03-17 18:02:08.428 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:02:08.428 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:08.428 -07 000000593 INF: FPGA: Recv ZSGSRD 36575
17-03-17 18:02:08.438 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:08.438 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:08.438 -07 000000561 INF: FPGA: Recv ZSGSRD 36572
17-03-17 18:02:08.448 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:08.448 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:08.448 -07 000000576 INF: FPGA: Recv ZSGSRD 36582
17-03-17 18:02:08.458 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:08.458 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:08.458 -07 000000482 INF: FPGA: Recv ZSGSRD 36584
17-03-17 18:02:08.468 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:08.468 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:08.468 -07 000000458 INF: FPGA: Recv ZSGSRD 36575
17-03-17 18:02:08.478 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:08.478 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:08.478 -07 000000409 INF: FPGA: Recv ZSGSRD 36584
17-03-17 18:02:08.488 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:08.488 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:08.488 -07 000000627 INF: FPGA: Recv ZSGSRD 36566
17-03-17 18:02:08.498 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:08.498 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:08.498 -07 000000551 INF: FPGA: Recv ZSGSRD 36574
17-03-17 18:02:08.508 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:08.508 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:08.508 -07 000000475 INF: FPGA: Recv ZSGSRD 36575
17-03-17 18:02:08.518 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:08.518 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:02:08.518 -07 000000623 INF: FPGA: Recv ZPIEZORD 32700
17-03-17 18:02:08.528 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:08.528 -07 000000486 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.843 V. Piezo Error = -8.6 V.
17-03-17 18:02:08.528 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36577 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36575 (-174.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36566 (-174.3 uncal um), Max = 36584 (-174.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 18:02:08.528 -07 000000486 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36577, posNoise = 7, negNoise = 11
17-03-17 18:02:08.528 -07 000000486 INF: Z Motor: After move to -0.175290, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:02:08.528 -07 000000486 INF: Z Motor: Settle wait time = 1423 ms, measure time = 107 ms (allowed 150 ms), total time = 1530 ms
17-03-17 18:02:08.528 -07 000000486 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:02:08.578 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1712 ms
17-03-17 18:02:08.578 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:02:08.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:02:08.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:02:08.578 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:02:08.578 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:02:08.578 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:02:08.578 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:02:08.578 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:02:08.578 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:02:08.588 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:02:08.588 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:02:08.598 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:02:08.598 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:02:08.598 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:02:08.648 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:02:08.848 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:02:08.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:02:08.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:02:08.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:02:08.878 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:02:08.888 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 18:02:08.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:02:08.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:02:08.968 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:08.978 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:02:08.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:02:08.988 -07 000000626 INF: Autofocus start
17-03-17 18:02:08.988 -07 000000626 INF: MeasureProfile start
17-03-17 18:02:08.988 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:02:08.998 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:02:08.998 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 18:02:08.998 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:02:08.998 -07 000000626 INF: MeasureProfile done
17-03-17 18:02:08.998 -07 000000626 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:02:08.998 -07 000000626 INF: Autofocus finished
17-03-17 18:02:09.198 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:02:09.198 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 18:02:09.208 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.175301759520325. ----------
17-03-17 18:02:09.208 -07 000000610 INF: Cycle	8	Tile	11	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:02:09.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36824, sync = True, waitForSettling = True)
17-03-17 18:02:09.208 -07 000000610 INF: Z Motor: Moving to -0.168569 mm, started at -0.175302 mm, distance = 6.73 um
17-03-17 18:02:09.208 -07 000000610 INF: FPGA: Xmit ZDACW 36824\n [Z Motor]
17-03-17 18:02:09.208 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 18:02:09.218 -07 000000610 INF: FPGA: 'ZDACW 36824' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:02:09.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:02:09.218 -07 000000480 INF: FPGA: Recv ZDACR 36824
17-03-17 18:02:09.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:09.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:02:09.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:09.378 -07 000000576 INF: FPGA: Recv ZSGSRD 35537
17-03-17 18:02:09.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:02:09.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:09.388 -07 000000433 INF: FPGA: Recv ZSGSRD 35531
17-03-17 18:02:09.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:09.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:09.398 -07 000000626 INF: FPGA: Recv ZSGSRD 35530
17-03-17 18:02:09.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:09.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:09.408 -07 000000476 INF: FPGA: Recv ZSGSRD 35523
17-03-17 18:02:09.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:09.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:09.418 -07 000000458 INF: FPGA: Recv ZSGSRD 35527
17-03-17 18:02:09.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:09.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:09.428 -07 000000627 INF: FPGA: Recv ZSGSRD 35536
17-03-17 18:02:09.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:09.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:09.438 -07 000000459 INF: FPGA: Recv ZSGSRD 35524
17-03-17 18:02:09.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:09.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:09.448 -07 000000433 INF: FPGA: Recv ZSGSRD 35531
17-03-17 18:02:09.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:09.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:09.458 -07 000000561 INF: FPGA: Recv ZSGSRD 35524
17-03-17 18:02:09.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:09.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:09.468 -07 000000486 INF: FPGA: Recv ZSGSRD 35533
17-03-17 18:02:09.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:09.478 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:02:09.478 -07 000000593 INF: FPGA: Recv ZPIEZORD 31332
17-03-17 18:02:09.488 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:09.488 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.619 V. Piezo Error = -9.3 V.
17-03-17 18:02:09.488 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35530 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35530 (-167.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35523 (-167.7 uncal um), Max = 35537 (-167.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:02:09.488 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35530, posNoise = 7, negNoise = 7
17-03-17 18:02:09.488 -07 000000610 INF: Z Motor: After move to -0.168569, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:02:09.488 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 18:02:09.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:02:09.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:02:09.488 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:02:09.488 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:02:09.488 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:02:09.488 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:02:09.488 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:02:09.488 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:02:09.488 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:02:09.488 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:02:09.488 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:02:09.488 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:02:09.498 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:02:09.498 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:02:09.498 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:02:09.498 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:02:09.508 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:02:09.508 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:02:09.508 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:02:09.508 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:02:09.518 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37001 150\n [Camera]
17-03-17 18:02:09.708 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:02:10.108 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:02:10.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:02:10.108 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:02:10.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:02:10.108 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:02:10.108 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:02:10.118 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:02:10.118 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:02:10.128 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) start.
17-03-17 18:02:10.128 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2181237920, 0x0, 391868352) start.
17-03-17 18:02:10.128 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 3.98264,
17-03-17 18:02:10.298 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37001 777
17-03-17 18:02:10.448 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:02:10.508 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 18:02:10.508 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:02:10.508 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:10.508 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2181237920, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 18:02:10.508 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:02:10.508 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:10.518 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:02:10.518 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:02:10.518 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 18:02:10.528 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 18:02:10.638 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:02:10.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:02:10.638 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:02:10.638 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:02:10.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:02:10.638 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:02:10.648 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:02:10.648 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1049694256, 0x0, 391868352) start.
17-03-17 18:02:10.648 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:02:10.648 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1085116520, 0x0, 418435064) start.
17-03-17 18:02:10.828 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:02:10.828 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:02:10.828 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37001 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-17 18:02:10.828 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:02:10.828 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.168575609407902. ------
17-03-17 18:02:10.948 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:02:10.948 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17514 mm
17-03-17 18:02:10.948 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:02:10.948 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:02:10.948 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 18:02:10.948 -07 000000458 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 18:02:10.958 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:02:10.958 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:10.958 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38259, sync = True, waitForSettling = False)
17-03-17 18:02:10.958 -07 000000480 INF: Z Motor: Moving to -0.175138 mm, started at -0.168576 mm, distance = -6.56 um
17-03-17 18:02:10.958 -07 000000627 INF: FPGA: Recv YRDPOS 139684
17-03-17 18:02:10.968 -07 000000480 INF: FPGA: Xmit ZDACW 38259\n [Z Motor]
17-03-17 18:02:10.968 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:02:10.968 -07 000000458 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:10.968 -07 000000458 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:02:10.968 -07 000000458 INF: Y Motor: Moving 1340 steps-16
17-03-17 18:02:10.968 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 18:02:10.978 -07 000000480 INF: FPGA: 'ZDACW 38259' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:02:10.978 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:02:10.988 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:02:10.998 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:02:10.998 -07 000000627 INF: FPGA: Recv ZDACR 38259
17-03-17 18:02:11.008 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:02:11.008 -07 000000480 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 18:02:11.038 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1085116520, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 18:02:11.038 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:02:11.038 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:11.038 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1049694256, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 18:02:11.038 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:02:11.038 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:11.038 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:02:11.048 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:02:11.048 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 18:02:11.048 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:02:11.178 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:02:11.178 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:02:11.358 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 18:02:11.358 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:02:11.398 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:11.398 -07 000000486 INF: FPGA: Recv YRDPOS 141367
17-03-17 18:02:11.408 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:02:11.408 -07 000000458 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:11.408 -07 000000458 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 18:02:11.408 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 18:02:11.558 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:02:11.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:02:12.358 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:12.358 -07 000000627 INF: FPGA: Recv YRDPOS 141368
17-03-17 18:02:12.368 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:02:12.368 -07 000000458 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:12.388 -07 000000458 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:02:12.388 -07 000000458 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:02:12.388 -07 000000458 INF: Y Motor: Moved to 69.0273 after 1431 ms (table move)
17-03-17 18:02:12.388 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175138 mm (DAC = 38259)
17-03-17 18:02:12.388 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:12.388 -07 000000576 INF: FPGA: Recv ZSGSRD 36555
17-03-17 18:02:12.398 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:02:12.398 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:12.398 -07 000000576 INF: FPGA: Recv ZSGSRD 36547
17-03-17 18:02:12.408 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:12.408 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:12.408 -07 000000458 INF: FPGA: Recv ZSGSRD 36556
17-03-17 18:02:12.418 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:12.418 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:12.418 -07 000000458 INF: FPGA: Recv ZSGSRD 36559
17-03-17 18:02:12.428 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:12.428 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:12.428 -07 000000458 INF: FPGA: Recv ZSGSRD 36560
17-03-17 18:02:12.438 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:12.438 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:12.438 -07 000000458 INF: FPGA: Recv ZSGSRD 36551
17-03-17 18:02:12.448 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:12.448 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:12.448 -07 000000486 INF: FPGA: Recv ZSGSRD 36556
17-03-17 18:02:12.458 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:12.458 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:12.458 -07 000000480 INF: FPGA: Recv ZSGSRD 36554
17-03-17 18:02:12.468 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:12.468 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:12.468 -07 000000458 INF: FPGA: Recv ZSGSRD 36549
17-03-17 18:02:12.478 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:12.478 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:12.478 -07 000000458 INF: FPGA: Recv ZSGSRD 36549
17-03-17 18:02:12.488 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:12.488 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:02:12.488 -07 000000458 INF: FPGA: Recv ZPIEZORD 32708
17-03-17 18:02:12.498 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:12.498 -07 000000626 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.838 V. Piezo Error = -8.5 V.
17-03-17 18:02:12.498 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.1 um, Read 10 ADC samples: Avg = 36554 (-174.3 uncal um), Error = 0.9 uncal um, Median = 36554 (-174.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36547 (-174.2 uncal um), Max = 36560 (-174.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:02:12.498 -07 000000626 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36554, posNoise = 6, negNoise = 7
17-03-17 18:02:12.498 -07 000000626 INF: Z Motor: After move to -0.175138, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:02:12.498 -07 000000626 INF: Z Motor: Settle wait time = 1433 ms, measure time = 106 ms (allowed 150 ms), total time = 1539 ms
17-03-17 18:02:12.498 -07 000000626 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:02:12.548 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 18:02:12.548 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:02:12.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:02:12.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:02:12.548 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:02:12.548 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:02:12.548 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:02:12.548 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:02:12.548 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:02:12.548 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:02:12.558 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:02:12.558 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:02:12.568 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:02:12.568 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 18:02:12.568 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:02:12.608 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:02:12.808 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:02:12.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:02:12.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:02:12.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:02:12.848 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:02:12.848 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 18:02:12.848 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 18:02:12.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:02:12.938 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:12.938 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:02:12.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:02:13.048 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:02:13.048 -07 000000409 INF: Autofocus start
17-03-17 18:02:13.048 -07 000000409 INF: MeasureProfile start
17-03-17 18:02:13.048 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:02:13.058 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:02:13.058 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:02:13.058 -07 000000409 INF: MeasureProfile done
17-03-17 18:02:13.058 -07 000000409 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:02:13.058 -07 000000409 INF: Autofocus finished
17-03-17 18:02:13.258 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:02:13.258 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:02:13.258 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.175154002641065. ----------
17-03-17 18:02:13.258 -07 000000610 INF: Cycle	8	Tile	12	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:02:13.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36756, sync = True, waitForSettling = True)
17-03-17 18:02:13.268 -07 000000610 INF: Z Motor: Moving to -0.168258 mm, started at -0.175154 mm, distance = 6.90 um
17-03-17 18:02:13.268 -07 000000610 INF: FPGA: Xmit ZDACW 36756\n [Z Motor]
17-03-17 18:02:13.268 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 18:02:13.278 -07 000000610 INF: FPGA: 'ZDACW 36756' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:13.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:02:13.278 -07 000000458 INF: FPGA: Recv ZDACR 36756
17-03-17 18:02:13.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:13.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:02:13.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:13.438 -07 000000458 INF: FPGA: Recv ZSGSRD 35489
17-03-17 18:02:13.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:02:13.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:13.448 -07 000000458 INF: FPGA: Recv ZSGSRD 35486
17-03-17 18:02:13.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:13.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:13.458 -07 000000458 INF: FPGA: Recv ZSGSRD 35480
17-03-17 18:02:13.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:13.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:13.468 -07 000000458 INF: FPGA: Recv ZSGSRD 35478
17-03-17 18:02:13.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:13.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:13.478 -07 000000475 INF: FPGA: Recv ZSGSRD 35488
17-03-17 18:02:13.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:13.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:13.488 -07 000000561 INF: FPGA: Recv ZSGSRD 35483
17-03-17 18:02:13.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:13.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:13.498 -07 000000459 INF: FPGA: Recv ZSGSRD 35486
17-03-17 18:02:13.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:02:13.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:13.508 -07 000000458 INF: FPGA: Recv ZSGSRD 35481
17-03-17 18:02:13.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:13.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:13.518 -07 000000480 INF: FPGA: Recv ZSGSRD 35484
17-03-17 18:02:13.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:13.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:13.528 -07 000000480 INF: FPGA: Recv ZSGSRD 35489
17-03-17 18:02:13.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:13.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:02:13.538 -07 000000459 INF: FPGA: Recv ZPIEZORD 31279
17-03-17 18:02:13.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:13.548 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.609 V. Piezo Error = -9.3 V.
17-03-17 18:02:13.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35484 (-167.4 uncal um), Error = 0.8 uncal um, Median = 35485 (-167.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35478 (-167.4 uncal um), Max = 35489 (-167.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:02:13.548 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35484, posNoise = 5, negNoise = 6
17-03-17 18:02:13.548 -07 000000610 INF: Z Motor: After move to -0.168258, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:02:13.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:02:13.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:02:13.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:02:13.548 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:02:13.548 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:02:13.548 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:02:13.548 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:02:13.548 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:02:13.548 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:02:13.548 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:02:13.548 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:02:13.548 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:02:13.548 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:02:13.548 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:02:13.548 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:02:13.558 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:02:13.558 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:02:13.568 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:02:13.568 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:02:13.568 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:02:13.568 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:02:13.568 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36933 150\n [Camera]
17-03-17 18:02:13.768 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:02:14.168 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:02:14.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:02:14.168 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:02:14.168 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:02:14.168 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 18:02:14.168 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:02:14.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:02:14.168 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:02:14.168 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:02:14.168 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2181237920, 0x0, 418435064) start.
17-03-17 18:02:14.358 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36933 776
17-03-17 18:02:14.508 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:02:14.538 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:02:14.538 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:02:14.538 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:14.538 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2181237920, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:02:14.538 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:02:14.538 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:14.548 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:02:14.548 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:02:14.548 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:02:14.558 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:02:14.698 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:02:14.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:02:14.698 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:02:14.698 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:02:14.698 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) start.
17-03-17 18:02:14.698 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:02:14.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:02:14.698 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:02:14.698 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:02:14.698 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1120538784, 0x0, 418435064) start.
17-03-17 18:02:14.888 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:02:14.888 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:02:14.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36933 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-17 18:02:14.888 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:02:14.888 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.168280095649381. ------
17-03-17 18:02:14.888 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:02:14.888 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17469 mm
17-03-17 18:02:14.888 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:02:14.898 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 38161, sync = True, waitForSettling = False)
17-03-17 18:02:14.898 -07 000000576 INF: Z Motor: Moving to -0.174690 mm, started at -0.168280 mm, distance = -6.41 um
17-03-17 18:02:14.898 -07 000000576 INF: FPGA: Xmit ZDACW 38161\n [Z Motor]
17-03-17 18:02:14.898 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 18:02:14.898 -07 000000627 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 18:02:14.898 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:02:14.898 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-17 18:02:14.898 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 18:02:14.908 -07 000000576 INF: FPGA: 'ZDACW 38161' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:02:14.908 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:02:14.918 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:14.918 -07 000000561 INF: FPGA: Recv YRDPOS 141368
17-03-17 18:02:14.928 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:02:14.928 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 18:02:14.928 -07 000000627 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:14.928 -07 000000627 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:02:14.928 -07 000000627 INF: Y Motor: Moving 1352 steps-32
17-03-17 18:02:14.928 -07 000000409 INF: FPGA: Recv ZDACR 38161
17-03-17 18:02:14.938 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:02:14.938 -07 000000576 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 18:02:14.938 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:02:15.078 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:02:15.078 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:02:15.078 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:15.078 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1120538784, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:02:15.078 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:02:15.078 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:15.088 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:02:15.088 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:02:15.088 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:02:15.098 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:02:15.108 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:02:15.108 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 208 ms overall
17-03-17 18:02:15.308 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 18:02:15.308 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 18:02:15.348 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:15.348 -07 000000623 INF: FPGA: Recv YRDPOS 143080
17-03-17 18:02:15.358 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:02:15.358 -07 000000627 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:15.358 -07 000000627 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 18:02:15.358 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.845 mm, average velocity = 2.184 mm/sec
17-03-17 18:02:15.488 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 3.99219,
17-03-17 18:02:16.308 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:16.308 -07 000000551 INF: FPGA: Recv YRDPOS 143080
17-03-17 18:02:16.318 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:02:16.318 -07 000000627 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:16.338 -07 000000627 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:02:16.338 -07 000000627 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:02:16.338 -07 000000627 INF: Y Motor: Moved to 69.8633 after 1440 ms (table move)
17-03-17 18:02:16.338 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174690 mm (DAC = 38161)
17-03-17 18:02:16.338 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:16.348 -07 000000551 INF: FPGA: Recv ZSGSRD 36480
17-03-17 18:02:16.348 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:02:16.348 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:16.348 -07 000000458 INF: FPGA: Recv ZSGSRD 36481
17-03-17 18:02:16.358 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:02:16.358 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:16.358 -07 000000480 INF: FPGA: Recv ZSGSRD 36488
17-03-17 18:02:16.368 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:16.368 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:16.368 -07 000000561 INF: FPGA: Recv ZSGSRD 36485
17-03-17 18:02:16.378 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:16.378 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:16.378 -07 000000458 INF: FPGA: Recv ZSGSRD 36483
17-03-17 18:02:16.388 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:16.388 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:16.388 -07 000000433 INF: FPGA: Recv ZSGSRD 36484
17-03-17 18:02:16.398 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:16.398 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:16.398 -07 000000541 INF: FPGA: Recv ZSGSRD 36483
17-03-17 18:02:16.408 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:16.408 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:16.408 -07 000000433 INF: FPGA: Recv ZSGSRD 36480
17-03-17 18:02:16.418 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:16.418 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:16.418 -07 000000541 INF: FPGA: Recv ZSGSRD 36483
17-03-17 18:02:16.428 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:16.428 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:16.428 -07 000000433 INF: FPGA: Recv ZSGSRD 36484
17-03-17 18:02:16.438 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:16.438 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:02:16.438 -07 000000576 INF: FPGA: Recv ZPIEZORD 32599
17-03-17 18:02:16.448 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:16.448 -07 000000626 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.823 V. Piezo Error = -8.6 V.
17-03-17 18:02:16.448 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36483 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36483 (-173.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36480 (-173.8 uncal um), Max = 36488 (-173.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:02:16.448 -07 000000626 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36483, posNoise = 5, negNoise = 3
17-03-17 18:02:16.448 -07 000000626 INF: Z Motor: After move to -0.174690, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:02:16.448 -07 000000626 INF: Z Motor: Settle wait time = 1444 ms, measure time = 105 ms (allowed 150 ms), total time = 1549 ms
17-03-17 18:02:16.448 -07 000000626 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:02:16.498 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 18:02:16.498 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:02:16.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:02:16.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:02:16.498 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:02:16.498 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:02:16.498 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:02:16.498 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:02:16.498 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:02:16.498 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:02:16.508 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:02:16.508 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:02:16.508 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:02:16.508 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 18:02:16.518 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:02:16.558 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:02:16.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:02:16.558 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:02:16.758 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:02:16.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:02:16.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:02:16.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-17 18:02:16.798 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:02:16.798 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 18:02:16.798 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 18:02:16.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:02:16.888 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:16.888 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:02:16.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:02:16.898 -07 000000551 INF: Autofocus start
17-03-17 18:02:16.898 -07 000000551 INF: MeasureProfile start
17-03-17 18:02:16.898 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:02:16.898 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:02:16.908 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:02:16.908 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:02:16.908 -07 000000551 INF: MeasureProfile done
17-03-17 18:02:16.908 -07 000000551 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:02:16.908 -07 000000551 INF: Autofocus finished
17-03-17 18:02:17.108 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:02:17.108 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:02:17.108 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.174697883579. ----------
17-03-17 18:02:17.108 -07 000000610 INF: Cycle	8	Tile	13	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:02:17.118 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36658, sync = True, waitForSettling = True)
17-03-17 18:02:17.118 -07 000000610 INF: Z Motor: Moving to -0.167810 mm, started at -0.174698 mm, distance = 6.89 um
17-03-17 18:02:17.118 -07 000000610 INF: FPGA: Xmit ZDACW 36658\n [Z Motor]
17-03-17 18:02:17.118 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 18:02:17.128 -07 000000610 INF: FPGA: 'ZDACW 36658' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:02:17.128 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:02:17.128 -07 000000561 INF: FPGA: Recv ZDACR 36658
17-03-17 18:02:17.138 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:17.138 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:02:17.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:17.288 -07 000000458 INF: FPGA: Recv ZSGSRD 35412
17-03-17 18:02:17.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:02:17.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:17.298 -07 000000561 INF: FPGA: Recv ZSGSRD 35412
17-03-17 18:02:17.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:17.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:17.308 -07 000000458 INF: FPGA: Recv ZSGSRD 35410
17-03-17 18:02:17.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:17.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:17.318 -07 000000458 INF: FPGA: Recv ZSGSRD 35415
17-03-17 18:02:17.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:17.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:17.328 -07 000000458 INF: FPGA: Recv ZSGSRD 35412
17-03-17 18:02:17.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:17.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:17.338 -07 000000458 INF: FPGA: Recv ZSGSRD 35414
17-03-17 18:02:17.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:17.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:17.348 -07 000000458 INF: FPGA: Recv ZSGSRD 35415
17-03-17 18:02:17.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:17.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:17.358 -07 000000458 INF: FPGA: Recv ZSGSRD 35411
17-03-17 18:02:17.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:17.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:17.368 -07 000000458 INF: FPGA: Recv ZSGSRD 35411
17-03-17 18:02:17.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:17.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:17.378 -07 000000433 INF: FPGA: Recv ZSGSRD 35412
17-03-17 18:02:17.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:17.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:02:17.388 -07 000000433 INF: FPGA: Recv ZPIEZORD 31185
17-03-17 18:02:17.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:17.398 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.594 V. Piezo Error = -9.3 V.
17-03-17 18:02:17.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35412 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35412 (-166.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35410 (-166.9 uncal um), Max = 35415 (-167.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 18:02:17.398 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35412, posNoise = 3, negNoise = 2
17-03-17 18:02:17.398 -07 000000610 INF: Z Motor: After move to -0.167810, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:02:17.398 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:02:17.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:02:17.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:02:17.398 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:02:17.398 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:02:17.398 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:02:17.398 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:02:17.398 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:02:17.398 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:02:17.398 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:02:17.398 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:02:17.398 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:02:17.398 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:02:17.408 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:02:17.408 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:02:17.408 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:02:17.408 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:02:17.418 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:02:17.418 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:02:17.418 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:02:17.418 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:02:17.418 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36835 150\n [Camera]
17-03-17 18:02:17.618 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:02:18.018 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:02:18.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:02:18.018 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:02:18.018 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:02:18.018 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:02:18.018 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:02:18.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:02:18.018 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:02:18.018 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:02:18.018 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:02:18.208 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36835 776
17-03-17 18:02:18.358 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:02:18.398 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:02:18.398 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 18:02:18.398 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:18.398 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 18:02:18.398 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:02:18.398 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:18.398 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:02:18.408 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:02:18.408 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:02:18.408 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:02:18.548 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:02:18.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:02:18.548 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:02:18.548 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:02:18.548 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:02:18.548 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:02:18.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:02:18.548 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:02:18.548 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:02:18.548 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:02:18.738 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:02:18.738 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:02:18.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36835 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-17 18:02:18.738 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:02:18.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.167817552375174. ------
17-03-17 18:02:18.738 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:02:18.738 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17432 mm
17-03-17 18:02:18.738 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:02:18.748 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:02:18.748 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:02:18.748 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:02:18.748 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 18:02:18.748 -07 000000409 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 18:02:18.868 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:18.868 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38081, sync = True, waitForSettling = False)
17-03-17 18:02:18.868 -07 000000561 INF: Z Motor: Moving to -0.174324 mm, started at -0.167818 mm, distance = -6.51 um
17-03-17 18:02:18.868 -07 000000551 INF: FPGA: Recv YRDPOS 143080
17-03-17 18:02:18.878 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:02:18.878 -07 000000409 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:18.878 -07 000000409 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:02:18.878 -07 000000409 INF: Y Motor: Moving 1343 steps-19
17-03-17 18:02:18.878 -07 000000561 INF: FPGA: Xmit ZDACW 38081\n [Z Motor]
17-03-17 18:02:18.878 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 18:02:18.888 -07 000000561 INF: FPGA: 'ZDACW 38081' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:02:18.888 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:02:18.888 -07 000000593 INF: FPGA: Recv ZDACR 38081
17-03-17 18:02:18.898 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:02:18.898 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:18.898 -07 000000561 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-17 18:02:18.938 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 18:02:18.938 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:02:18.938 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:18.938 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 18:02:18.938 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 18:02:18.938 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:18.938 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:02:18.938 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:02:18.938 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:02:18.948 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:02:18.948 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:02:18.948 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 81 ms to get response, and 202 ms overall
17-03-17 18:02:19.268 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 18:02:19.278 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 399 ms overall
17-03-17 18:02:19.308 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:19.318 -07 000000551 INF: FPGA: Recv YRDPOS 144770
17-03-17 18:02:19.318 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:02:19.318 -07 000000409 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:19.318 -07 000000409 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 18:02:19.318 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.839 mm, average velocity = 2.104 mm/sec
17-03-17 18:02:20.268 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:20.268 -07 000000551 INF: FPGA: Recv YRDPOS 144770
17-03-17 18:02:20.278 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:02:20.278 -07 000000409 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:20.288 -07 000000409 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:02:20.298 -07 000000409 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:02:20.298 -07 000000409 INF: Y Motor: Moved to 70.6885 after 1547 ms (table move)
17-03-17 18:02:20.298 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174324 mm (DAC = 38081)
17-03-17 18:02:20.298 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:20.298 -07 000000623 INF: FPGA: Recv ZSGSRD 36433
17-03-17 18:02:20.308 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:02:20.308 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:20.308 -07 000000433 INF: FPGA: Recv ZSGSRD 36431
17-03-17 18:02:20.318 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:20.318 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:20.318 -07 000000623 INF: FPGA: Recv ZSGSRD 36424
17-03-17 18:02:20.328 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:20.328 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:20.328 -07 000000486 INF: FPGA: Recv ZSGSRD 36428
17-03-17 18:02:20.338 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:20.338 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:20.338 -07 000000433 INF: FPGA: Recv ZSGSRD 36432
17-03-17 18:02:20.348 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:20.348 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:20.348 -07 000000458 INF: FPGA: Recv ZSGSRD 36424
17-03-17 18:02:20.358 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:20.358 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:20.358 -07 000000409 INF: FPGA: Recv ZSGSRD 36422
17-03-17 18:02:20.368 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:20.368 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:20.368 -07 000000561 INF: FPGA: Recv ZSGSRD 36425
17-03-17 18:02:20.378 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:20.378 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:20.378 -07 000000541 INF: FPGA: Recv ZSGSRD 36432
17-03-17 18:02:20.388 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:20.388 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:20.388 -07 000000561 INF: FPGA: Recv ZSGSRD 36425
17-03-17 18:02:20.398 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:20.398 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:02:20.398 -07 000000541 INF: FPGA: Recv ZPIEZORD 32527
17-03-17 18:02:20.408 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:20.408 -07 000000627 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.811 V. Piezo Error = -8.6 V.
17-03-17 18:02:20.408 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.3 um, Read 10 ADC samples: Avg = 36428 (-173.5 uncal um), Error = 0.9 uncal um, Median = 36426 (-173.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36422 (-173.4 uncal um), Max = 36433 (-173.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:02:20.408 -07 000000627 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36428, posNoise = 5, negNoise = 6
17-03-17 18:02:20.408 -07 000000627 INF: Z Motor: After move to -0.174324, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:02:20.408 -07 000000627 INF: Z Motor: Settle wait time = 1429 ms, measure time = 107 ms (allowed 150 ms), total time = 1536 ms
17-03-17 18:02:20.408 -07 000000627 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:02:20.458 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1711 ms
17-03-17 18:02:20.458 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:02:20.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:02:20.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:02:20.458 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:02:20.458 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:02:20.458 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:02:20.458 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:02:20.458 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:02:20.458 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:02:20.468 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:02:20.468 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:02:20.478 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:02:20.478 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:02:20.478 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:02:20.518 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:02:20.718 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:02:20.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:02:20.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:02:20.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:02:20.758 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:02:20.758 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 18:02:20.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 18:02:20.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 18:02:20.838 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:20.838 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:02:20.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 18:02:20.848 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 4.011254,
17-03-17 18:02:20.858 -07 000000458 INF: Autofocus start
17-03-17 18:02:20.858 -07 000000458 INF: MeasureProfile start
17-03-17 18:02:20.878 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:02:20.878 -07 000000458 INF: MeasureProfile done
17-03-17 18:02:20.878 -07 000000458 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:02:20.878 -07 000000458 INF: Autofocus finished
17-03-17 18:02:20.878 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:02:20.888 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:02:20.898 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:02:21.098 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:02:21.098 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 214 ms overall
17-03-17 18:02:21.108 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.174344551911203. ----------
17-03-17 18:02:21.108 -07 000000610 INF: Cycle	8	Tile	14	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:02:21.108 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36578, sync = True, waitForSettling = True)
17-03-17 18:02:21.108 -07 000000610 INF: Z Motor: Moving to -0.167443 mm, started at -0.174345 mm, distance = 6.90 um
17-03-17 18:02:21.108 -07 000000610 INF: FPGA: Xmit ZDACW 36578\n [Z Motor]
17-03-17 18:02:21.108 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 18:02:21.118 -07 000000610 INF: FPGA: 'ZDACW 36578' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:02:21.118 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:02:21.118 -07 000000576 INF: FPGA: Recv ZDACR 36578
17-03-17 18:02:21.128 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:21.128 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:02:21.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:21.278 -07 000000626 INF: FPGA: Recv ZSGSRD 35354
17-03-17 18:02:21.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:02:21.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:21.288 -07 000000541 INF: FPGA: Recv ZSGSRD 35354
17-03-17 18:02:21.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:21.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:21.308 -07 000000551 INF: FPGA: Recv ZSGSRD 35348
17-03-17 18:02:21.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:02:21.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:21.328 -07 000000551 INF: FPGA: Recv ZSGSRD 35356
17-03-17 18:02:21.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:02:21.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:21.338 -07 000000409 INF: FPGA: Recv ZSGSRD 35348
17-03-17 18:02:21.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:21.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:21.358 -07 000000593 INF: FPGA: Recv ZSGSRD 35350
17-03-17 18:02:21.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:02:21.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:21.368 -07 000000409 INF: FPGA: Recv ZSGSRD 35355
17-03-17 18:02:21.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:21.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:21.378 -07 000000551 INF: FPGA: Recv ZSGSRD 35354
17-03-17 18:02:21.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:21.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:21.388 -07 000000476 INF: FPGA: Recv ZSGSRD 35358
17-03-17 18:02:21.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:21.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:21.398 -07 000000409 INF: FPGA: Recv ZSGSRD 35351
17-03-17 18:02:21.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:21.408 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:02:21.408 -07 000000593 INF: FPGA: Recv ZPIEZORD 31114
17-03-17 18:02:21.418 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:21.418 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.581 V. Piezo Error = -9.3 V.
17-03-17 18:02:21.418 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35353 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35354 (-166.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35348 (-166.5 uncal um), Max = 35358 (-166.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:02:21.418 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35353, posNoise = 5, negNoise = 5
17-03-17 18:02:21.418 -07 000000610 INF: Z Motor: After move to -0.167443, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:02:21.418 -07 000000610 INF: Z Motor: MoveAbsStepped took 308 ms)
17-03-17 18:02:21.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:02:21.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:02:21.418 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:02:21.418 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:02:21.418 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:02:21.418 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:02:21.418 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:02:21.418 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:02:21.418 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:02:21.418 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:02:21.418 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:02:21.418 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:02:21.428 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:02:21.428 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:02:21.428 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:02:21.428 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:02:21.438 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:02:21.438 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:02:21.438 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 18:02:21.438 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:02:21.438 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36754 150\n [Camera]
17-03-17 18:02:21.558 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:02:21.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:02:21.638 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:02:22.028 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:02:22.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:02:22.028 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:02:22.028 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:02:22.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:02:22.038 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:02:22.038 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1049694256, 0x0, 391868352) start.
17-03-17 18:02:22.038 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:02:22.038 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:02:22.038 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1085116520, 0x0, 418435064) start.
17-03-17 18:02:22.218 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36754 776
17-03-17 18:02:22.368 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:02:22.408 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1049694256, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 18:02:22.408 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 18:02:22.408 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:22.408 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1085116520, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 18:02:22.408 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 18:02:22.408 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:22.408 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:02:22.418 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:02:22.418 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:02:22.418 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:02:22.558 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:02:22.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:02:22.558 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:02:22.558 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:02:22.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:02:22.558 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:02:22.568 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:02:22.568 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1120538784, 0x0, 391868352) start.
17-03-17 18:02:22.568 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:02:22.568 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:02:22.748 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:02:22.748 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:02:22.748 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36754 150' command took 2 ms to send, 1307 ms to get response, and 1313 ms overall
17-03-17 18:02:22.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:02:22.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.16743852385881. ------
17-03-17 18:02:22.758 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:02:22.758 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17413 mm
17-03-17 18:02:22.758 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:02:22.868 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:02:22.868 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 114 ms overall
17-03-17 18:02:22.868 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:02:22.878 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 18:02:22.878 -07 000000541 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 18:02:22.878 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:22.878 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 38039, sync = True, waitForSettling = False)
17-03-17 18:02:22.878 -07 000000551 INF: Z Motor: Moving to -0.174131 mm, started at -0.167439 mm, distance = -6.69 um
17-03-17 18:02:22.878 -07 000000486 INF: FPGA: Recv YRDPOS 144770
17-03-17 18:02:22.888 -07 000000551 INF: FPGA: Xmit ZDACW 38039\n [Z Motor]
17-03-17 18:02:22.888 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:02:22.888 -07 000000541 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:22.888 -07 000000541 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:02:22.888 -07 000000541 INF: Y Motor: Moving 1351 steps-29
17-03-17 18:02:22.888 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 18:02:22.898 -07 000000551 INF: FPGA: 'ZDACW 38039' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:02:22.898 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:02:22.908 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:02:22.908 -07 000000409 INF: FPGA: Recv ZDACR 38039
17-03-17 18:02:22.918 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:02:22.918 -07 000000551 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 18:02:22.948 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:02:22.948 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:02:22.948 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:22.958 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1120538784, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:02:22.958 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:02:22.958 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:22.958 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:02:22.958 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:02:22.958 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:02:22.968 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:02:23.078 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:02:23.078 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 200 ms to get response, and 202 ms overall
17-03-17 18:02:23.278 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 18:02:23.278 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 390 ms overall
17-03-17 18:02:23.308 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:23.308 -07 000000486 INF: FPGA: Recv YRDPOS 146471
17-03-17 18:02:23.318 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:02:23.318 -07 000000541 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:23.318 -07 000000541 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:02:23.318 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.844 mm, average velocity = 2.164 mm/sec
17-03-17 18:02:24.268 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:24.268 -07 000000476 INF: FPGA: Recv YRDPOS 146471
17-03-17 18:02:24.278 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:02:24.278 -07 000000541 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:24.298 -07 000000541 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:02:24.298 -07 000000541 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:02:24.298 -07 000000541 INF: Y Motor: Moved to 71.5190 after 1419 ms (table move)
17-03-17 18:02:24.298 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174131 mm (DAC = 38039)
17-03-17 18:02:24.298 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:24.298 -07 000000576 INF: FPGA: Recv ZSGSRD 36405
17-03-17 18:02:24.308 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:02:24.308 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:24.308 -07 000000433 INF: FPGA: Recv ZSGSRD 36399
17-03-17 18:02:24.318 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:24.318 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:24.318 -07 000000551 INF: FPGA: Recv ZSGSRD 36394
17-03-17 18:02:24.328 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:24.328 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:24.328 -07 000000476 INF: FPGA: Recv ZSGSRD 36393
17-03-17 18:02:24.338 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:24.338 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:24.338 -07 000000593 INF: FPGA: Recv ZSGSRD 36392
17-03-17 18:02:24.348 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:24.348 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:24.348 -07 000000541 INF: FPGA: Recv ZSGSRD 36386
17-03-17 18:02:24.358 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:24.358 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:24.358 -07 000000433 INF: FPGA: Recv ZSGSRD 36397
17-03-17 18:02:24.368 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:24.368 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:24.368 -07 000000486 INF: FPGA: Recv ZSGSRD 36398
17-03-17 18:02:24.378 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:24.378 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:24.378 -07 000000576 INF: FPGA: Recv ZSGSRD 36401
17-03-17 18:02:24.388 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:24.388 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:24.388 -07 000000593 INF: FPGA: Recv ZSGSRD 36397
17-03-17 18:02:24.398 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:24.398 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:02:24.398 -07 000000409 INF: FPGA: Recv ZPIEZORD 32472
17-03-17 18:02:24.408 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:24.408 -07 000000480 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.804 V. Piezo Error = -8.7 V.
17-03-17 18:02:24.408 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.1 um, Read 10 ADC samples: Avg = 36396 (-173.3 uncal um), Error = 0.9 uncal um, Median = 36397 (-173.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36386 (-173.2 uncal um), Max = 36405 (-173.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:02:24.408 -07 000000480 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36396, posNoise = 9, negNoise = 10
17-03-17 18:02:24.408 -07 000000480 INF: Z Motor: After move to -0.174131, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:02:24.408 -07 000000480 INF: Z Motor: Settle wait time = 1423 ms, measure time = 105 ms (allowed 150 ms), total time = 1528 ms
17-03-17 18:02:24.408 -07 000000480 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:02:24.458 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1696 ms
17-03-17 18:02:24.458 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:02:24.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:02:24.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:02:24.468 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:02:24.468 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:02:24.468 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:02:24.468 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:02:24.468 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:02:24.468 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:02:24.468 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:02:24.468 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:02:24.478 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:02:24.478 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:02:24.478 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:02:24.518 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:02:24.718 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:02:24.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:02:24.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:02:24.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:02:24.758 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:02:24.758 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 18:02:24.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 18:02:24.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 18:02:24.838 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:24.838 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:02:24.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 18:02:24.858 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:02:24.858 -07 000000486 INF: Autofocus start
17-03-17 18:02:24.858 -07 000000486 INF: MeasureProfile start
17-03-17 18:02:24.858 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:02:24.868 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:02:24.868 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:02:24.868 -07 000000486 INF: MeasureProfile done
17-03-17 18:02:24.868 -07 000000486 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:02:24.868 -07 000000486 INF: Autofocus finished
17-03-17 18:02:25.068 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:02:25.068 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:02:25.068 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.174138977122667. ----------
17-03-17 18:02:25.068 -07 000000610 INF: Cycle	8	Tile	15	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:02:25.078 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36554, sync = True, waitForSettling = True)
17-03-17 18:02:25.078 -07 000000610 INF: Z Motor: Moving to -0.167333 mm, started at -0.174139 mm, distance = 6.81 um
17-03-17 18:02:25.078 -07 000000610 INF: FPGA: Xmit ZDACW 36554\n [Z Motor]
17-03-17 18:02:25.078 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 18:02:25.088 -07 000000610 INF: FPGA: 'ZDACW 36554' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:02:25.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:02:25.088 -07 000000541 INF: FPGA: Recv ZDACR 36554
17-03-17 18:02:25.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:25.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:02:25.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:25.248 -07 000000486 INF: FPGA: Recv ZSGSRD 35339
17-03-17 18:02:25.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:25.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:25.258 -07 000000576 INF: FPGA: Recv ZSGSRD 35337
17-03-17 18:02:25.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:25.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:25.268 -07 000000486 INF: FPGA: Recv ZSGSRD 35341
17-03-17 18:02:25.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:25.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:25.278 -07 000000433 INF: FPGA: Recv ZSGSRD 35336
17-03-17 18:02:25.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:25.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:25.288 -07 000000486 INF: FPGA: Recv ZSGSRD 35334
17-03-17 18:02:25.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:25.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:25.298 -07 000000409 INF: FPGA: Recv ZSGSRD 35341
17-03-17 18:02:25.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:25.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:25.308 -07 000000476 INF: FPGA: Recv ZSGSRD 35343
17-03-17 18:02:25.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:25.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:25.318 -07 000000551 INF: FPGA: Recv ZSGSRD 35341
17-03-17 18:02:25.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:25.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:25.328 -07 000000593 INF: FPGA: Recv ZSGSRD 35337
17-03-17 18:02:25.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:25.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:25.338 -07 000000541 INF: FPGA: Recv ZSGSRD 35336
17-03-17 18:02:25.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:25.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:02:25.348 -07 000000480 INF: FPGA: Recv ZPIEZORD 31095
17-03-17 18:02:25.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:25.358 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.578 V. Piezo Error = -9.4 V.
17-03-17 18:02:25.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35338 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35338 (-166.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35334 (-166.4 uncal um), Max = 35343 (-166.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:02:25.358 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35338, posNoise = 5, negNoise = 4
17-03-17 18:02:25.358 -07 000000610 INF: Z Motor: After move to -0.167333, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:02:25.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:02:25.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:02:25.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:02:25.358 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:02:25.358 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:02:25.358 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:02:25.358 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:02:25.358 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:02:25.358 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:02:25.358 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:02:25.358 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:02:25.358 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:02:25.358 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:02:25.368 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:02:25.368 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:02:25.368 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:02:25.368 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:02:25.378 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:02:25.378 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:02:25.378 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:02:25.378 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:02:25.388 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36731 150\n [Camera]
17-03-17 18:02:25.588 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 18:02:25.978 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:02:25.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:02:25.978 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:02:25.978 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:02:25.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:02:25.978 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:02:25.978 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1049694256, 0x0, 391868352) start.
17-03-17 18:02:25.978 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:02:25.988 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:02:25.988 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1085116520, 0x0, 418435064) start.
17-03-17 18:02:26.168 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36731 776
17-03-17 18:02:26.218 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 3.999021,
17-03-17 18:02:26.318 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:02:26.378 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1049694256, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:02:26.378 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:02:26.378 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:26.378 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1085116520, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 18:02:26.378 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:02:26.378 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:26.378 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:02:26.378 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:02:26.388 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:02:26.388 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 18:02:26.508 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:02:26.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:02:26.508 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:02:26.508 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:02:26.508 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:02:26.508 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:02:26.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:02:26.508 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:02:26.508 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:02:26.508 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2181237920, 0x0, 418435064) start.
17-03-17 18:02:26.558 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:02:26.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:02:26.698 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:02:26.698 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:02:26.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36731 150' command took 2 ms to send, 1308 ms to get response, and 1317 ms overall
17-03-17 18:02:26.708 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:02:26.708 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.167342160676684. ------
17-03-17 18:02:26.708 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17351 mm
17-03-17 18:02:26.708 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:02:26.708 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 18:02:26.708 -07 000000576 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 18:02:26.708 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 37902, sync = True, waitForSettling = False)
17-03-17 18:02:26.708 -07 000000551 INF: Z Motor: Moving to -0.173504 mm, started at -0.167342 mm, distance = -6.16 um
17-03-17 18:02:26.718 -07 000000551 INF: FPGA: Xmit ZDACW 37902\n [Z Motor]
17-03-17 18:02:26.718 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:02:26.728 -07 000000551 INF: FPGA: 'ZDACW 37902' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:02:26.728 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:02:26.728 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:02:26.738 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:02:26.738 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:26.738 -07 000000480 INF: FPGA: Recv YRDPOS 146471
17-03-17 18:02:26.748 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:02:26.748 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 18:02:26.748 -07 000000576 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:26.748 -07 000000576 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:02:26.748 -07 000000576 INF: Y Motor: Moving 1350 steps-28
17-03-17 18:02:26.748 -07 000000480 INF: FPGA: Recv ZDACR 37902
17-03-17 18:02:26.758 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:02:26.758 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:02:26.758 -07 000000551 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 18:02:26.768 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:02:26.898 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2181237920, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 18:02:26.898 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:02:26.898 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:26.898 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:02:26.898 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 18:02:26.898 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:02:26.898 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:26.908 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:02:26.908 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:02:26.908 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:02:26.958 -07 000000409 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:02:26.958 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:02:27.138 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 18:02:27.138 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:02:27.168 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:27.178 -07 000000409 INF: FPGA: Recv YRDPOS 148171
17-03-17 18:02:27.188 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:02:27.188 -07 000000576 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:27.188 -07 000000576 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:02:27.188 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 18:02:28.138 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:28.138 -07 000000409 INF: FPGA: Recv YRDPOS 148171
17-03-17 18:02:28.148 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:02:28.148 -07 000000576 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:28.168 -07 000000576 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:02:28.168 -07 000000576 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:02:28.168 -07 000000576 INF: Y Motor: Moved to 72.3491 after 1451 ms (table move)
17-03-17 18:02:28.168 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173504 mm (DAC = 37902)
17-03-17 18:02:28.168 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:28.168 -07 000000476 INF: FPGA: Recv ZSGSRD 36301
17-03-17 18:02:28.178 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:02:28.178 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:28.178 -07 000000480 INF: FPGA: Recv ZSGSRD 36298
17-03-17 18:02:28.188 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:28.188 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:28.188 -07 000000476 INF: FPGA: Recv ZSGSRD 36289
17-03-17 18:02:28.198 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:28.198 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:28.198 -07 000000551 INF: FPGA: Recv ZSGSRD 36300
17-03-17 18:02:28.208 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:28.208 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:28.208 -07 000000409 INF: FPGA: Recv ZSGSRD 36300
17-03-17 18:02:28.218 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:28.218 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:28.218 -07 000000480 INF: FPGA: Recv ZSGSRD 36301
17-03-17 18:02:28.228 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:28.228 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:28.228 -07 000000476 INF: FPGA: Recv ZSGSRD 36299
17-03-17 18:02:28.238 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:28.238 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:28.238 -07 000000480 INF: FPGA: Recv ZSGSRD 36298
17-03-17 18:02:28.248 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:28.248 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:28.248 -07 000000476 INF: FPGA: Recv ZSGSRD 36296
17-03-17 18:02:28.258 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:28.258 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:28.258 -07 000000551 INF: FPGA: Recv ZSGSRD 36296
17-03-17 18:02:28.268 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:28.268 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:02:28.268 -07 000000486 INF: FPGA: Recv ZPIEZORD 32374
17-03-17 18:02:28.278 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:28.278 -07 000000433 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.783 V. Piezo Error = -8.7 V.
17-03-17 18:02:28.278 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36298 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36298 (-172.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36289 (-172.6 uncal um), Max = 36301 (-172.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:02:28.278 -07 000000433 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36298, posNoise = 3, negNoise = 9
17-03-17 18:02:28.278 -07 000000433 INF: Z Motor: After move to -0.173504, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:02:28.278 -07 000000433 INF: Z Motor: Settle wait time = 1454 ms, measure time = 107 ms (allowed 150 ms), total time = 1561 ms
17-03-17 18:02:28.278 -07 000000433 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:02:28.328 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-17 18:02:28.328 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:02:28.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:02:28.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:02:28.328 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:02:28.328 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:02:28.328 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:02:28.328 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:02:28.328 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:02:28.328 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:02:28.338 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:02:28.338 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:02:28.338 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:02:28.338 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:02:28.348 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:02:28.388 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:02:28.588 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:02:28.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:02:28.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:02:28.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-17 18:02:28.628 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:02:28.628 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 18:02:28.628 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 18:02:28.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:02:28.718 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:28.718 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:02:28.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:02:28.728 -07 000000433 INF: Autofocus start
17-03-17 18:02:28.728 -07 000000433 INF: MeasureProfile start
17-03-17 18:02:28.728 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:02:28.728 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:02:28.738 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:02:28.738 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:02:28.738 -07 000000433 INF: MeasureProfile done
17-03-17 18:02:28.738 -07 000000433 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 18:02:28.738 -07 000000433 INF: Autofocus finished
17-03-17 18:02:28.938 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:02:28.938 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 18:02:28.938 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173509404332774. ----------
17-03-17 18:02:28.938 -07 000000610 INF: Cycle	8	Tile	16	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:02:28.948 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36382, sync = True, waitForSettling = True)
17-03-17 18:02:28.948 -07 000000610 INF: Z Motor: Moving to -0.166546 mm, started at -0.173509 mm, distance = 6.96 um
17-03-17 18:02:28.948 -07 000000610 INF: FPGA: Xmit ZDACW 36382\n [Z Motor]
17-03-17 18:02:28.948 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:02:28.958 -07 000000610 INF: FPGA: 'ZDACW 36382' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:28.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:02:28.958 -07 000000433 INF: FPGA: Recv ZDACR 36382
17-03-17 18:02:28.968 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:28.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:02:29.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:29.118 -07 000000486 INF: FPGA: Recv ZSGSRD 35216
17-03-17 18:02:29.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:02:29.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:29.128 -07 000000433 INF: FPGA: Recv ZSGSRD 35217
17-03-17 18:02:29.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:29.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:29.138 -07 000000576 INF: FPGA: Recv ZSGSRD 35214
17-03-17 18:02:29.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:29.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:29.148 -07 000000409 INF: FPGA: Recv ZSGSRD 35213
17-03-17 18:02:29.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:29.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:29.158 -07 000000476 INF: FPGA: Recv ZSGSRD 35217
17-03-17 18:02:29.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:29.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:29.168 -07 000000486 INF: FPGA: Recv ZSGSRD 35216
17-03-17 18:02:29.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:29.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:29.178 -07 000000433 INF: FPGA: Recv ZSGSRD 35217
17-03-17 18:02:29.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:29.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:29.188 -07 000000476 INF: FPGA: Recv ZSGSRD 35211
17-03-17 18:02:29.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:29.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:29.198 -07 000000551 INF: FPGA: Recv ZSGSRD 35217
17-03-17 18:02:29.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:29.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:29.208 -07 000000480 INF: FPGA: Recv ZSGSRD 35215
17-03-17 18:02:29.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:29.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:02:29.218 -07 000000476 INF: FPGA: Recv ZPIEZORD 30925
17-03-17 18:02:29.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:29.228 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.552 V. Piezo Error = -9.5 V.
17-03-17 18:02:29.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35215 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35216 (-165.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35211 (-165.7 uncal um), Max = 35217 (-165.7 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:02:29.228 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35215, posNoise = 2, negNoise = 4
17-03-17 18:02:29.228 -07 000000610 INF: Z Motor: After move to -0.166546, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:02:29.228 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:02:29.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:02:29.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:02:29.228 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:02:29.228 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:02:29.228 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:02:29.228 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:02:29.228 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:02:29.228 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:02:29.228 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:02:29.228 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:02:29.228 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:02:29.228 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:02:29.228 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:02:29.228 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:02:29.238 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:02:29.238 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:02:29.248 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:02:29.248 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:02:29.248 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:02:29.248 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:02:29.258 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36559 150\n [Camera]
17-03-17 18:02:29.458 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:02:29.848 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:02:29.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:02:29.848 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:02:29.848 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:02:29.848 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2221065488, 0x0, 391868352) start.
17-03-17 18:02:29.848 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:02:29.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:02:29.848 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:02:29.848 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:02:29.848 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 18:02:30.038 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36559 776
17-03-17 18:02:30.188 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:02:30.248 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2221065488, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 18:02:30.248 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:02:30.248 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:30.248 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 18:02:30.248 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 18:02:30.248 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:30.258 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:02:30.258 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 18:02:30.258 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:02:30.258 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 18:02:30.378 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:02:30.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:02:30.378 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:02:30.378 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:02:30.378 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 18:02:30.378 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:02:30.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:02:30.378 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:02:30.378 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:02:30.378 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:02:30.568 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:02:30.568 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:02:30.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36559 150' command took 2 ms to send, 1304 ms to get response, and 1314 ms overall
17-03-17 18:02:30.568 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:02:30.568 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.166551982583247. ------
17-03-17 18:02:30.688 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17307 mm
17-03-17 18:02:30.688 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:02:30.688 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:02:30.698 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 37808, sync = True, waitForSettling = False)
17-03-17 18:02:30.698 -07 000000433 INF: Z Motor: Moving to -0.173074 mm, started at -0.166552 mm, distance = -6.52 um
17-03-17 18:02:30.698 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 18:02:30.698 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:02:30.698 -07 000000541 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 18:02:30.698 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:02:30.698 -07 000000433 INF: FPGA: Xmit ZDACW 37808\n [Z Motor]
17-03-17 18:02:30.698 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:02:30.708 -07 000000433 INF: FPGA: 'ZDACW 37808' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:02:30.708 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:02:30.708 -07 000000409 INF: FPGA: Recv ZDACR 37808
17-03-17 18:02:30.718 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:30.718 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:30.718 -07 000000433 INF: Z Motor: MoveAbsStepped took 17 ms (did NOT wait for settling yet))
17-03-17 18:02:30.718 -07 000000409 INF: FPGA: Recv YRDPOS 148172
17-03-17 18:02:30.728 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:02:30.728 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:02:30.728 -07 000000541 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:30.728 -07 000000541 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:02:30.728 -07 000000541 INF: Y Motor: Moving 1349 steps-28
17-03-17 18:02:30.738 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:02:30.778 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 18:02:30.778 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:02:30.778 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:30.778 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 18:02:30.778 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:02:30.778 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:30.788 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:02:30.788 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:02:30.788 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 18:02:30.788 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 18:02:30.928 -07 000000409 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:02:30.928 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 229 ms overall
17-03-17 18:02:31.108 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 18:02:31.118 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 385 ms overall
17-03-17 18:02:31.148 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:31.148 -07 000000433 INF: FPGA: Recv YRDPOS 149864
17-03-17 18:02:31.158 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:02:31.158 -07 000000541 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:31.158 -07 000000541 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-17 18:02:31.158 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.843 mm, average velocity = 2.185 mm/sec
17-03-17 18:02:31.558 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:02:31.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:02:31.578 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 3.997626,
17-03-17 18:02:32.108 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:32.108 -07 000000476 INF: FPGA: Recv YRDPOS 149864
17-03-17 18:02:32.118 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:32.118 -07 000000541 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:32.128 -07 000000541 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:02:32.138 -07 000000541 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:02:32.138 -07 000000541 INF: Y Motor: Moved to 73.1758 after 1437 ms (table move)
17-03-17 18:02:32.138 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173074 mm (DAC = 37808)
17-03-17 18:02:32.138 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:32.138 -07 000000433 INF: FPGA: Recv ZSGSRD 36238
17-03-17 18:02:32.148 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:02:32.148 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:32.148 -07 000000433 INF: FPGA: Recv ZSGSRD 36232
17-03-17 18:02:32.158 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:32.158 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:32.158 -07 000000480 INF: FPGA: Recv ZSGSRD 36234
17-03-17 18:02:32.168 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:32.178 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:32.178 -07 000000482 INF: FPGA: Recv ZSGSRD 36230
17-03-17 18:02:32.188 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:02:32.188 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:32.188 -07 000000541 INF: FPGA: Recv ZSGSRD 36242
17-03-17 18:02:32.198 -07 000000593 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:02:32.218 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:32.218 -07 000000576 INF: FPGA: Recv ZSGSRD 36238
17-03-17 18:02:32.228 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:02:32.248 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:32.248 -07 000000476 INF: FPGA: Recv ZSGSRD 36229
17-03-17 18:02:32.258 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:02:32.258 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:32.258 -07 000000433 INF: FPGA: Recv ZSGSRD 36235
17-03-17 18:02:32.268 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:32.268 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:32.268 -07 000000551 INF: FPGA: Recv ZSGSRD 36232
17-03-17 18:02:32.278 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:32.278 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:32.278 -07 000000433 INF: FPGA: Recv ZSGSRD 36224
17-03-17 18:02:32.288 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:32.288 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:02:32.288 -07 000000476 INF: FPGA: Recv ZPIEZORD 32308
17-03-17 18:02:32.298 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:32.298 -07 000000593 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.769 V. Piezo Error = -8.7 V.
17-03-17 18:02:32.298 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36233 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36233 (-172.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36224 (-172.2 uncal um), Max = 36242 (-172.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:02:32.298 -07 000000593 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36233, posNoise = 9, negNoise = 9
17-03-17 18:02:32.298 -07 000000593 INF: Z Motor: After move to -0.173074, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:02:32.298 -07 000000593 INF: Z Motor: Settle wait time = 1440 ms, measure time = 158 ms (allowed 150 ms), total time = 1598 ms
17-03-17 18:02:32.298 -07 000000593 INF: Z Motor: Warning: Actual position measuring time = 158 ms, longer than max expected time of 150 ms
17-03-17 18:02:32.298 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 18:02:32.298 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:02:32.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:02:32.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:02:32.298 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:02:32.298 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:02:32.298 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:02:32.298 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:02:32.298 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:02:32.298 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:02:32.308 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:02:32.308 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:02:32.318 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:02:32.318 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 18:02:32.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:02:32.358 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:02:32.558 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:02:32.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:02:32.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:02:32.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:02:32.598 -07 000000476 INF: FPGA: Recv @CAMSNAP 281
17-03-17 18:02:32.598 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 18:02:32.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 18:02:32.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 18:02:32.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:32.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:02:32.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 18:02:32.698 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:02:32.698 -07 000000433 INF: Autofocus start
17-03-17 18:02:32.698 -07 000000433 INF: MeasureProfile start
17-03-17 18:02:32.698 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:02:32.708 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:02:32.708 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:02:32.718 -07 000000433 INF: MeasureProfile done
17-03-17 18:02:32.718 -07 000000433 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 18:02:32.718 -07 000000433 INF: Autofocus finished
17-03-17 18:02:32.908 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:02:32.908 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:02:32.908 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.17309183054356. ----------
17-03-17 18:02:32.908 -07 000000610 INF: Cycle	8	Tile	17	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:02:32.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36288, sync = True, waitForSettling = True)
17-03-17 18:02:32.918 -07 000000610 INF: Z Motor: Moving to -0.166116 mm, started at -0.173092 mm, distance = 6.98 um
17-03-17 18:02:32.918 -07 000000610 INF: FPGA: Xmit ZDACW 36288\n [Z Motor]
17-03-17 18:02:32.918 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:02:32.928 -07 000000610 INF: FPGA: 'ZDACW 36288' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:32.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:02:32.928 -07 000000482 INF: FPGA: Recv ZDACR 36288
17-03-17 18:02:32.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:32.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:02:33.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:33.088 -07 000000480 INF: FPGA: Recv ZSGSRD 35148
17-03-17 18:02:33.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:02:33.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:33.098 -07 000000551 INF: FPGA: Recv ZSGSRD 35154
17-03-17 18:02:33.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:33.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:33.108 -07 000000486 INF: FPGA: Recv ZSGSRD 35153
17-03-17 18:02:33.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:33.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:33.118 -07 000000476 INF: FPGA: Recv ZSGSRD 35149
17-03-17 18:02:33.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:33.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:33.128 -07 000000486 INF: FPGA: Recv ZSGSRD 35144
17-03-17 18:02:33.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:33.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:33.138 -07 000000541 INF: FPGA: Recv ZSGSRD 35157
17-03-17 18:02:33.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:33.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:33.148 -07 000000576 INF: FPGA: Recv ZSGSRD 35149
17-03-17 18:02:33.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:33.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:33.158 -07 000000480 INF: FPGA: Recv ZSGSRD 35148
17-03-17 18:02:33.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:33.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:33.168 -07 000000541 INF: FPGA: Recv ZSGSRD 35150
17-03-17 18:02:33.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:33.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:33.178 -07 000000482 INF: FPGA: Recv ZSGSRD 35148
17-03-17 18:02:33.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:33.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:02:33.188 -07 000000433 INF: FPGA: Recv ZPIEZORD 30848
17-03-17 18:02:33.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:33.198 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.537 V. Piezo Error = -9.5 V.
17-03-17 18:02:33.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.1 um, Read 10 ADC samples: Avg = 35150 (-165.3 uncal um), Error = 0.8 uncal um, Median = 35149 (-165.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35144 (-165.2 uncal um), Max = 35157 (-165.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:02:33.198 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35150, posNoise = 7, negNoise = 6
17-03-17 18:02:33.198 -07 000000610 INF: Z Motor: After move to -0.166116, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:02:33.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:02:33.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:02:33.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:02:33.198 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:02:33.198 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:02:33.198 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:02:33.198 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:02:33.198 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:02:33.198 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:02:33.198 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:02:33.198 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:02:33.198 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 18:02:33.198 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:02:33.208 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:02:33.208 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:02:33.208 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:02:33.208 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:02:33.218 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:02:33.218 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:02:33.218 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:02:33.218 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:02:33.218 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36464 150\n [Camera]
17-03-17 18:02:33.418 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:02:33.808 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:02:33.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:02:33.818 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:02:33.818 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:02:33.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:02:33.818 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:02:33.818 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:02:33.818 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2181237920, 0x0, 391868352) start.
17-03-17 18:02:33.828 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:02:33.828 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) start.
17-03-17 18:02:34.008 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36464 776
17-03-17 18:02:34.158 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:02:34.218 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 18:02:34.218 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:02:34.218 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:34.218 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2181237920, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:02:34.218 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:02:34.218 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:34.218 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:02:34.218 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:02:34.218 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 18:02:34.228 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 18:02:34.348 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:02:34.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:02:34.348 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:02:34.348 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:02:34.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:02:34.348 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:02:34.348 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:02:34.358 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:02:34.358 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:02:34.358 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:02:34.538 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:02:34.538 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:02:34.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36464 150' command took 2 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-17 18:02:34.538 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:02:34.538 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.166134408794033. ------
17-03-17 18:02:34.538 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:02:34.538 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17247 mm
17-03-17 18:02:34.538 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:02:34.548 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:02:34.548 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 18:02:34.548 -07 000000482 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 18:02:34.548 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:34.548 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:02:34.548 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 37675, sync = True, waitForSettling = False)
17-03-17 18:02:34.548 -07 000000475 INF: Z Motor: Moving to -0.172465 mm, started at -0.166134 mm, distance = -6.33 um
17-03-17 18:02:34.548 -07 000000561 INF: FPGA: Recv YRDPOS 149865
17-03-17 18:02:34.558 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:02:34.558 -07 000000482 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:34.558 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:02:34.558 -07 000000482 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:02:34.558 -07 000000482 INF: Y Motor: Moving 1354 steps-34
17-03-17 18:02:34.568 -07 000000475 INF: FPGA: Xmit ZDACW 37675\n [Z Motor]
17-03-17 18:02:34.568 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 18:02:34.578 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:02:34.578 -07 000000475 INF: FPGA: 'ZDACW 37675' command took 1 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:02:34.588 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:02:34.588 -07 000000458 INF: FPGA: Recv ZDACR 37675
17-03-17 18:02:34.598 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:02:34.598 -07 000000475 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 18:02:34.748 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 18:02:34.748 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:02:34.748 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:34.758 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:02:34.758 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:02:34.758 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 18:02:34.758 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:02:34.878 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 515 ms.
17-03-17 18:02:34.878 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-17 18:02:34.878 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:34.878 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:02:34.878 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 532 ms.
17-03-17 18:02:34.948 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 18:02:34.948 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 18:02:34.978 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:34.978 -07 000000480 INF: FPGA: Recv YRDPOS 151569
17-03-17 18:02:34.988 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:02:34.988 -07 000000482 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:34.988 -07 000000482 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 18:02:34.988 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.847 mm, average velocity = 2.144 mm/sec
17-03-17 18:02:35.938 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:35.938 -07 000000458 INF: FPGA: Recv YRDPOS 151569
17-03-17 18:02:35.948 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:02:35.948 -07 000000482 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:35.958 -07 000000482 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:02:35.958 -07 000000482 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:02:35.958 -07 000000482 INF: Y Motor: Moved to 74.0083 after 1412 ms (table move)
17-03-17 18:02:35.958 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172465 mm (DAC = 37675)
17-03-17 18:02:35.958 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:35.968 -07 000000561 INF: FPGA: Recv ZSGSRD 36142
17-03-17 18:02:35.968 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:02:35.968 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:35.968 -07 000000626 INF: FPGA: Recv ZSGSRD 36144
17-03-17 18:02:35.978 -07 000000593 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:02:35.978 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:35.978 -07 000000551 INF: FPGA: Recv ZSGSRD 36141
17-03-17 18:02:35.988 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:35.988 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:35.988 -07 000000433 INF: FPGA: Recv ZSGSRD 36135
17-03-17 18:02:35.998 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:35.998 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:35.998 -07 000000551 INF: FPGA: Recv ZSGSRD 36135
17-03-17 18:02:36.008 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:36.008 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:36.008 -07 000000433 INF: FPGA: Recv ZSGSRD 36138
17-03-17 18:02:36.018 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:36.018 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:36.018 -07 000000551 INF: FPGA: Recv ZSGSRD 36137
17-03-17 18:02:36.028 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:36.028 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:36.028 -07 000000476 INF: FPGA: Recv ZSGSRD 36137
17-03-17 18:02:36.038 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:36.038 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:36.038 -07 000000551 INF: FPGA: Recv ZSGSRD 36135
17-03-17 18:02:36.048 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:36.048 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:36.048 -07 000000476 INF: FPGA: Recv ZSGSRD 36136
17-03-17 18:02:36.058 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:36.058 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:02:36.058 -07 000000551 INF: FPGA: Recv ZPIEZORD 32190
17-03-17 18:02:36.068 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:36.068 -07 000000593 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.749 V. Piezo Error = -8.7 V.
17-03-17 18:02:36.068 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36138 (-171.6 uncal um), Error = 0.9 uncal um, Median = 36137 (-171.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36135 (-171.6 uncal um), Max = 36144 (-171.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:02:36.068 -07 000000593 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36138, posNoise = 6, negNoise = 3
17-03-17 18:02:36.068 -07 000000593 INF: Z Motor: After move to -0.172465, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:02:36.068 -07 000000593 INF: Z Motor: Settle wait time = 1414 ms, measure time = 103 ms (allowed 150 ms), total time = 1517 ms
17-03-17 18:02:36.068 -07 000000593 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 18:02:36.118 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1571 ms
17-03-17 18:02:36.118 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:02:36.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:02:36.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:02:36.118 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:02:36.118 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:02:36.118 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:02:36.118 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:02:36.118 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:02:36.118 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:02:36.128 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:02:36.128 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:02:36.128 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 18:02:36.128 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 18:02:36.138 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:02:36.178 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:02:36.378 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:02:36.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:02:36.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:02:36.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:02:36.418 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:02:36.418 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 18:02:36.418 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 18:02:36.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:02:36.508 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:36.508 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:02:36.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 18:02:36.558 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:02:36.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:02:36.618 -07 000000482 INF: Autofocus start
17-03-17 18:02:36.618 -07 000000482 INF: MeasureProfile start
17-03-17 18:02:36.628 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:02:36.628 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:02:36.628 -07 000000482 INF: MeasureProfile done
17-03-17 18:02:36.628 -07 000000482 INF: X=48  Z correction [um]=0.1739867
17-03-17 18:02:36.628 -07 000000482 INF: Autofocus finished
17-03-17 18:02:36.638 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:02:36.638 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:02:36.838 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:02:36.838 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:02:36.838 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.172481530390092. ----------
17-03-17 18:02:36.838 -07 000000610 INF: Cycle	8	Tile	18	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:02:36.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36226, sync = True, waitForSettling = True)
17-03-17 18:02:36.848 -07 000000610 INF: Z Motor: Moving to -0.165832 mm, started at -0.172482 mm, distance = 6.65 um
17-03-17 18:02:36.848 -07 000000610 INF: FPGA: Xmit ZDACW 36226\n [Z Motor]
17-03-17 18:02:36.848 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 18:02:36.858 -07 000000610 INF: FPGA: 'ZDACW 36226' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:02:36.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:02:36.858 -07 000000482 INF: FPGA: Recv ZDACR 36226
17-03-17 18:02:36.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:36.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:02:36.938 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 4.014009,
17-03-17 18:02:37.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:37.018 -07 000000561 INF: FPGA: Recv ZSGSRD 35102
17-03-17 18:02:37.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:02:37.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:37.028 -07 000000551 INF: FPGA: Recv ZSGSRD 35110
17-03-17 18:02:37.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:37.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:37.038 -07 000000593 INF: FPGA: Recv ZSGSRD 35103
17-03-17 18:02:37.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:37.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:37.048 -07 000000541 INF: FPGA: Recv ZSGSRD 35101
17-03-17 18:02:37.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:37.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:37.058 -07 000000551 INF: FPGA: Recv ZSGSRD 35108
17-03-17 18:02:37.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:37.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:37.068 -07 000000541 INF: FPGA: Recv ZSGSRD 35106
17-03-17 18:02:37.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:37.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:37.078 -07 000000551 INF: FPGA: Recv ZSGSRD 35101
17-03-17 18:02:37.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:37.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:37.088 -07 000000541 INF: FPGA: Recv ZSGSRD 35098
17-03-17 18:02:37.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:37.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:37.098 -07 000000626 INF: FPGA: Recv ZSGSRD 35104
17-03-17 18:02:37.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:37.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:37.108 -07 000000551 INF: FPGA: Recv ZSGSRD 35109
17-03-17 18:02:37.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:37.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:02:37.118 -07 000000626 INF: FPGA: Recv ZPIEZORD 30824
17-03-17 18:02:37.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:37.128 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.528 V. Piezo Error = -9.4 V.
17-03-17 18:02:37.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.8 um, Read 10 ADC samples: Avg = 35104 (-165.0 uncal um), Error = 0.9 uncal um, Median = 35104 (-165.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35098 (-164.9 uncal um), Max = 35110 (-165.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:02:37.128 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35104, posNoise = 6, negNoise = 6
17-03-17 18:02:37.128 -07 000000610 INF: Z Motor: After move to -0.165832, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:02:37.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:02:37.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:02:37.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:02:37.128 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:02:37.128 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:02:37.128 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:02:37.128 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:02:37.128 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:02:37.128 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:02:37.128 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:02:37.128 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:02:37.128 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:02:37.128 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:02:37.138 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:02:37.138 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:02:37.138 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:02:37.138 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:02:37.148 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:02:37.148 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:02:37.148 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:02:37.148 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:02:37.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36402 150\n [Camera]
17-03-17 18:02:37.348 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:02:37.748 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:02:37.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:02:37.748 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:02:37.748 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:02:37.748 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:02:37.748 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:02:37.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:02:37.748 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:02:37.748 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:02:37.748 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2181237920, 0x0, 418435064) start.
17-03-17 18:02:37.938 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36402 776
17-03-17 18:02:38.088 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:02:38.148 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 18:02:38.148 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:02:38.148 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:38.148 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2181237920, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 18:02:38.148 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:02:38.148 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:38.158 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:02:38.158 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 18:02:38.158 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:02:38.158 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 18:02:38.278 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:02:38.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:02:38.278 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:02:38.278 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:02:38.278 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) start.
17-03-17 18:02:38.278 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:02:38.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:02:38.278 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:02:38.278 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:02:38.278 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 18:02:38.468 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:02:38.468 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:02:38.468 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36402 150' command took 2 ms to send, 1303 ms to get response, and 1314 ms overall
17-03-17 18:02:38.468 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:02:38.468 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.165838895035512. ------
17-03-17 18:02:38.478 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:02:38.478 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17217 mm
17-03-17 18:02:38.478 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:02:38.478 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:02:38.478 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 18:02:38.478 -07 000000576 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 18:02:38.478 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 37610, sync = True, waitForSettling = False)
17-03-17 18:02:38.478 -07 000000551 INF: Z Motor: Moving to -0.172168 mm, started at -0.165839 mm, distance = -6.33 um
17-03-17 18:02:38.488 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:02:38.488 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:38.488 -07 000000475 INF: FPGA: Recv YRDPOS 151569
17-03-17 18:02:38.498 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:02:38.498 -07 000000576 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:38.498 -07 000000576 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:02:38.498 -07 000000576 INF: Y Motor: Moving 1351 steps-29
17-03-17 18:02:38.498 -07 000000551 INF: FPGA: Xmit ZDACW 37610\n [Z Motor]
17-03-17 18:02:38.498 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 18:02:38.508 -07 000000551 INF: FPGA: 'ZDACW 37610' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:02:38.508 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:02:38.518 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:02:38.528 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:02:38.528 -07 000000475 INF: FPGA: Recv ZDACR 37610
17-03-17 18:02:38.538 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:02:38.538 -07 000000551 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 18:02:38.668 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 18:02:38.678 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:02:38.678 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:38.678 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:02:38.678 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 18:02:38.678 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:02:38.678 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:38.688 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 18:02:38.688 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:02:38.688 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 18:02:38.708 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:02:38.708 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 18:02:38.888 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 18:02:38.888 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:02:38.928 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:38.928 -07 000000541 INF: FPGA: Recv YRDPOS 153256
17-03-17 18:02:38.938 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:02:38.938 -07 000000576 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:38.938 -07 000000576 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 18:02:38.938 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.127 mm/sec
17-03-17 18:02:39.888 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:39.888 -07 000000480 INF: FPGA: Recv YRDPOS 153256
17-03-17 18:02:39.898 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:39.898 -07 000000576 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:39.908 -07 000000576 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:02:39.908 -07 000000576 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:02:39.908 -07 000000576 INF: Y Motor: Moved to 74.8320 after 1430 ms (table move)
17-03-17 18:02:39.908 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172168 mm (DAC = 37610)
17-03-17 18:02:39.908 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:39.918 -07 000000480 INF: FPGA: Recv ZSGSRD 36093
17-03-17 18:02:39.918 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:02:39.918 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:39.918 -07 000000551 INF: FPGA: Recv ZSGSRD 36090
17-03-17 18:02:39.928 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:02:39.928 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:39.928 -07 000000541 INF: FPGA: Recv ZSGSRD 36088
17-03-17 18:02:39.938 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:39.938 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:39.938 -07 000000486 INF: FPGA: Recv ZSGSRD 36091
17-03-17 18:02:39.948 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:39.948 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:39.948 -07 000000551 INF: FPGA: Recv ZSGSRD 36087
17-03-17 18:02:39.958 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:39.958 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:39.958 -07 000000576 INF: FPGA: Recv ZSGSRD 36094
17-03-17 18:02:39.968 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:39.968 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:39.968 -07 000000475 INF: FPGA: Recv ZSGSRD 36092
17-03-17 18:02:39.978 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:39.978 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:39.978 -07 000000551 INF: FPGA: Recv ZSGSRD 36097
17-03-17 18:02:39.988 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:39.988 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:39.988 -07 000000475 INF: FPGA: Recv ZSGSRD 36086
17-03-17 18:02:39.998 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:39.998 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:39.998 -07 000000486 INF: FPGA: Recv ZSGSRD 36087
17-03-17 18:02:40.008 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:40.008 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:02:40.008 -07 000000551 INF: FPGA: Recv ZPIEZORD 32131
17-03-17 18:02:40.018 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:40.018 -07 000000458 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.739 V. Piezo Error = -8.7 V.
17-03-17 18:02:40.018 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36090 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36090 (-171.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36086 (-171.3 uncal um), Max = 36097 (-171.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:02:40.018 -07 000000458 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36090, posNoise = 7, negNoise = 4
17-03-17 18:02:40.018 -07 000000458 INF: Z Motor: After move to -0.172168, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:02:40.018 -07 000000458 INF: Z Motor: Settle wait time = 1433 ms, measure time = 103 ms (allowed 150 ms), total time = 1536 ms
17-03-17 18:02:40.018 -07 000000458 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 18:02:40.068 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 18:02:40.068 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:02:40.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:02:40.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:02:40.068 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:02:40.068 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:02:40.068 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:02:40.068 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:02:40.068 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:02:40.068 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:02:40.078 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:02:40.078 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:02:40.088 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:02:40.088 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:02:40.088 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:02:40.138 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:02:40.328 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:02:40.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:02:40.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:02:40.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-17 18:02:40.368 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:02:40.368 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 18:02:40.368 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 18:02:40.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:02:40.458 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:40.458 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:02:40.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:02:40.578 -07 000000486 INF: Autofocus start
17-03-17 18:02:40.578 -07 000000486 INF: MeasureProfile start
17-03-17 18:02:40.578 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:02:40.578 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:02:40.588 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:02:40.588 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:02:40.588 -07 000000486 INF: MeasureProfile done
17-03-17 18:02:40.588 -07 000000486 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:02:40.588 -07 000000486 INF: Autofocus finished
17-03-17 18:02:40.788 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:02:40.788 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 18:02:40.788 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.172173168207288. ----------
17-03-17 18:02:40.798 -07 000000610 INF: Cycle	8	Tile	19	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:02:40.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36125, sync = True, waitForSettling = True)
17-03-17 18:02:40.798 -07 000000610 INF: Z Motor: Moving to -0.165370 mm, started at -0.172173 mm, distance = 6.80 um
17-03-17 18:02:40.798 -07 000000610 INF: FPGA: Xmit ZDACW 36125\n [Z Motor]
17-03-17 18:02:40.808 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 18:02:40.808 -07 000000610 INF: FPGA: 'ZDACW 36125' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:02:40.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:02:40.808 -07 000000541 INF: FPGA: Recv ZDACR 36125
17-03-17 18:02:40.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:40.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:02:40.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:40.968 -07 000000482 INF: FPGA: Recv ZSGSRD 35032
17-03-17 18:02:40.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:02:40.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:40.978 -07 000000541 INF: FPGA: Recv ZSGSRD 35036
17-03-17 18:02:40.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:40.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:40.988 -07 000000551 INF: FPGA: Recv ZSGSRD 35029
17-03-17 18:02:40.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:40.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:40.998 -07 000000482 INF: FPGA: Recv ZSGSRD 35036
17-03-17 18:02:41.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:41.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:41.008 -07 000000576 INF: FPGA: Recv ZSGSRD 35028
17-03-17 18:02:41.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:41.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:41.018 -07 000000541 INF: FPGA: Recv ZSGSRD 35035
17-03-17 18:02:41.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:41.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:41.028 -07 000000486 INF: FPGA: Recv ZSGSRD 35032
17-03-17 18:02:41.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:41.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:41.038 -07 000000541 INF: FPGA: Recv ZSGSRD 35027
17-03-17 18:02:41.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:41.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:41.048 -07 000000458 INF: FPGA: Recv ZSGSRD 35032
17-03-17 18:02:41.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:41.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:41.058 -07 000000475 INF: FPGA: Recv ZSGSRD 35029
17-03-17 18:02:41.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:41.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:02:41.068 -07 000000482 INF: FPGA: Recv ZPIEZORD 30721
17-03-17 18:02:41.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:41.078 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.512 V. Piezo Error = -9.5 V.
17-03-17 18:02:41.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.4 um, Read 10 ADC samples: Avg = 35032 (-164.5 uncal um), Error = 0.9 uncal um, Median = 35032 (-164.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35027 (-164.5 uncal um), Max = 35036 (-164.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:02:41.078 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35032, posNoise = 4, negNoise = 5
17-03-17 18:02:41.078 -07 000000610 INF: Z Motor: After move to -0.165370, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:02:41.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:02:41.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:02:41.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:02:41.078 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:02:41.078 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:02:41.078 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:02:41.078 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:02:41.078 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:02:41.078 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:02:41.078 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:02:41.078 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:02:41.078 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:02:41.078 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:02:41.088 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:02:41.088 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:02:41.088 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:02:41.088 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:02:41.098 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:02:41.098 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:02:41.098 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:02:41.098 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:02:41.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36302 150\n [Camera]
17-03-17 18:02:41.308 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:02:41.558 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:02:41.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:02:41.688 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:02:41.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:02:41.698 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:02:41.698 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:02:41.698 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1049694256, 0x0, 391868352) start.
17-03-17 18:02:41.698 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:02:41.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:02:41.698 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:02:41.698 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:02:41.698 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1085116520, 0x0, 418435064) start.
17-03-17 18:02:41.888 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36302 776
17-03-17 18:02:42.038 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:02:42.078 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1049694256, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 18:02:42.078 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:02:42.078 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:42.088 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1085116520, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 18:02:42.088 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:02:42.088 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:42.088 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:02:42.088 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:02:42.088 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:02:42.098 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:02:42.218 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:02:42.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:02:42.228 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:02:42.228 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:02:42.228 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1120538784, 0x0, 391868352) start.
17-03-17 18:02:42.228 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:02:42.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:02:42.228 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:02:42.228 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:02:42.228 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:02:42.418 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 4.000345,
17-03-17 18:02:42.418 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:02:42.418 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:02:42.418 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36302 150' command took 2 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-17 18:02:42.628 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1120538784, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 18:02:42.628 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:02:42.628 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:42.638 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 18:02:42.638 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 18:02:42.638 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 18:02:42.638 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 410 ms.
17-03-17 18:02:42.638 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:02:42.638 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:42.638 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:02:42.648 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-17 18:02:42.678 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 18:02:42.678 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 18:02:42.718 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 18:02:42.728 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 18:02:42.728 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 18:02:42.728 -07 000000480 INF: FPGA: Recv EMCUR 
17-03-17 18:02:42.738 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:02:42.738 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 18:02:43.238 -07 000000541 INF: FPGA: Recv EMIN
17-03-17 18:02:43.238 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 18:02:43.238 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 18:02:43.238 -07 000000627 INF: FPGA: Recv EMCUR 
17-03-17 18:02:43.248 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:02:43.248 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:02:43.248 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83203125, Z-Position -0.165376351761305. ------
17-03-17 18:02:43.248 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13996 mm
17-03-17 18:02:43.248 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:02:43.248 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:02:43.248 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 18:02:43.248 -07 000000623 INF: Y Motor: Moving to 59.9126 mm, started at 74.8320 mm, delta = -14.9194 mm
17-03-17 18:02:43.248 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 30574, sync = True, waitForSettling = False)
17-03-17 18:02:43.258 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:43.258 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:02:43.258 -07 000000627 INF: Z Motor: Moving to -0.139959 mm, started at -0.165376 mm, distance = 25.42 um
17-03-17 18:02:43.258 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:02:43.258 -07 000000541 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:02:43.268 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:02:43.268 -07 000000623 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:43.268 -07 000000627 INF: FPGA: Xmit ZDACW 30574\n [Z Motor]
17-03-17 18:02:43.268 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 18:02:43.268 -07 000000623 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 18:02:43.268 -07 000000623 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 18:02:43.278 -07 000000627 INF: FPGA: 'ZDACW 30574' command took 3 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:02:43.278 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:02:43.288 -07 000000623 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 18:02:43.298 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:02:43.298 -07 000000541 INF: FPGA: Recv ZDACR 30574
17-03-17 18:02:43.308 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:02:43.308 -07 000000627 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 18:02:43.478 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:02:43.478 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 18:02:44.918 -07 000000482 INF: FPGA: Recv YMVTO 122702 23903
17-03-17 18:02:44.918 -07 000000623 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1621 ms to get response, and 1645 ms overall
17-03-17 18:02:44.918 -07 000000623 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-17 18:02:44.918 -07 000000623 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 18:02:44.918 -07 000000623 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1645 ms, distance = 14.919 mm, average velocity = 9.070 mm/sec
17-03-17 18:02:46.558 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:02:46.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:02:47.778 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:47.778 -07 000000482 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:02:47.778 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 3.96762,
17-03-17 18:02:47.788 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 18:02:47.788 -07 000000623 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:47.808 -07 000000623 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:02:47.808 -07 000000623 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -3 counts (-0.001 mm)
17-03-17 18:02:47.808 -07 000000623 INF: Y Motor: Moved to 59.9116 after 4558 ms
17-03-17 18:02:47.818 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139959 mm (DAC = 30574)
17-03-17 18:02:47.828 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:47.828 -07 000000623 INF: FPGA: Recv ZSGSRD 31075
17-03-17 18:02:47.838 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:02:47.838 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:47.838 -07 000000482 INF: FPGA: Recv ZSGSRD 31079
17-03-17 18:02:47.848 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:47.848 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:47.848 -07 000000627 INF: FPGA: Recv ZSGSRD 31078
17-03-17 18:02:47.858 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:47.858 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:47.858 -07 000000541 INF: FPGA: Recv ZSGSRD 31075
17-03-17 18:02:47.868 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:47.868 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:47.868 -07 000000486 INF: FPGA: Recv ZSGSRD 31079
17-03-17 18:02:47.878 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:47.878 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:47.878 -07 000000551 INF: FPGA: Recv ZSGSRD 31073
17-03-17 18:02:47.888 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:47.888 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:47.888 -07 000000482 INF: FPGA: Recv ZSGSRD 31079
17-03-17 18:02:47.898 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:47.898 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:47.898 -07 000000623 INF: FPGA: Recv ZSGSRD 31082
17-03-17 18:02:47.908 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:47.908 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:47.908 -07 000000482 INF: FPGA: Recv ZSGSRD 31080
17-03-17 18:02:47.918 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:47.918 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:47.918 -07 000000623 INF: FPGA: Recv ZSGSRD 31083
17-03-17 18:02:47.928 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:47.928 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:02:47.928 -07 000000486 INF: FPGA: Recv ZPIEZORD 26636
17-03-17 18:02:47.938 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:47.938 -07 000000475 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.665 V. Piezo Error = -9.8 V.
17-03-17 18:02:47.938 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.0 um, Read 10 ADC samples: Avg = 31078 (-139.2 uncal um), Error = 0.8 uncal um, Median = 31079 (-139.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 31073 (-139.1 uncal um), Max = 31083 (-139.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:02:47.938 -07 000000475 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31078, posNoise = 5, negNoise = 5
17-03-17 18:02:47.938 -07 000000475 INF: Z Motor: After move to -0.139959, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:02:47.938 -07 000000475 INF: Z Motor: Settle wait time = 4562 ms, measure time = 118 ms (allowed 150 ms), total time = 4680 ms
17-03-17 18:02:47.938 -07 000000475 INF: Z Motor: Waiting extra 32 ms after reading position to reach expected total of 150 ms
17-03-17 18:02:47.978 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4723 ms
17-03-17 18:02:47.978 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:02:47.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:02:47.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:02:47.978 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:02:47.978 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:02:47.978 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:02:47.978 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:02:47.978 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:02:47.978 -07 000000551 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 18:02:48.008 -07 000000551 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-17 18:02:48.008 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:02:48.008 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:02:48.008 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:02:48.018 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:02:48.018 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 32 ms.
17-03-17 18:02:48.018 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:02:48.058 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:02:48.258 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:02:48.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:02:48.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:02:48.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:02:48.298 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:02:48.298 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 18:02:48.298 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 18:02:48.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 18:02:48.378 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:48.378 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:02:48.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 18:02:48.398 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:02:48.398 -07 000000623 INF: Image SNR check: start
17-03-17 18:02:48.398 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:02:48.408 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:02:48.408 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:02:48.418 -07 000000623 INF: Image SNR check: pass  [peak (Max-Min)=65.88]
17-03-17 18:02:48.418 -07 000000623 INF: Autofocus start
17-03-17 18:02:48.418 -07 000000623 INF: MeasureProfile start
17-03-17 18:02:48.428 -07 000000623 INF: MeasureProfile done
17-03-17 18:02:48.428 -07 000000623 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:02:48.428 -07 000000623 INF: Autofocus finished
17-03-17 18:02:48.608 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:02:48.608 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 18:02:48.618 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.139975016952782. ----------
17-03-17 18:02:48.618 -07 000000610 INF: Cycle	8	Tile	1	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:02:48.628 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29098, sync = True, waitForSettling = True)
17-03-17 18:02:48.628 -07 000000610 INF: Z Motor: Moving to -0.133202 mm, started at -0.139975 mm, distance = 6.77 um
17-03-17 18:02:48.628 -07 000000610 INF: FPGA: Xmit ZDACW 29098\n [Z Motor]
17-03-17 18:02:48.628 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:02:48.638 -07 000000610 INF: FPGA: 'ZDACW 29098' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:48.638 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:02:48.638 -07 000000475 INF: FPGA: Recv ZDACR 29098
17-03-17 18:02:48.648 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:48.648 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:02:48.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:48.798 -07 000000475 INF: FPGA: Recv ZSGSRD 30024
17-03-17 18:02:48.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:48.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:48.808 -07 000000459 INF: FPGA: Recv ZSGSRD 30022
17-03-17 18:02:48.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:48.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:48.818 -07 000000486 INF: FPGA: Recv ZSGSRD 30027
17-03-17 18:02:48.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:48.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:48.828 -07 000000627 INF: FPGA: Recv ZSGSRD 30026
17-03-17 18:02:48.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:48.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:48.838 -07 000000459 INF: FPGA: Recv ZSGSRD 30030
17-03-17 18:02:48.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:48.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:48.848 -07 000000486 INF: FPGA: Recv ZSGSRD 30022
17-03-17 18:02:48.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:48.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:48.858 -07 000000482 INF: FPGA: Recv ZSGSRD 30028
17-03-17 18:02:48.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:48.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:48.868 -07 000000541 INF: FPGA: Recv ZSGSRD 30026
17-03-17 18:02:48.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:48.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:48.878 -07 000000482 INF: FPGA: Recv ZSGSRD 30018
17-03-17 18:02:48.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:48.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:48.888 -07 000000480 INF: FPGA: Recv ZSGSRD 30020
17-03-17 18:02:48.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:48.898 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:02:48.898 -07 000000627 INF: FPGA: Recv ZPIEZORD 25496
17-03-17 18:02:48.908 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:48.908 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.440 V. Piezo Error = -9.9 V.
17-03-17 18:02:48.908 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30024 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30025 (-132.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30018 (-132.4 uncal um), Max = 30030 (-132.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:02:48.908 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30024, posNoise = 6, negNoise = 6
17-03-17 18:02:48.908 -07 000000610 INF: Z Motor: After move to -0.133202, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:02:48.908 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:02:48.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:02:48.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:02:48.908 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:02:48.908 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:02:48.908 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:02:48.908 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:02:48.908 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:02:48.908 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:02:48.908 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:02:48.908 -07 000000486 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 18:02:48.908 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:02:48.908 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:02:48.908 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:02:48.908 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:02:48.918 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:02:48.918 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:02:48.928 -07 000000486 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 18:02:48.928 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:02:48.938 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:02:48.938 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:02:48.938 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:02:48.938 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-17 18:02:48.948 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 29275 150\n [Camera]
17-03-17 18:02:49.148 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:02:49.538 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:02:49.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:02:49.578 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:02:49.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:02:49.578 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:02:49.578 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:02:49.588 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:02:49.588 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2181237920, 0x0, 391868352) start.
17-03-17 18:02:49.598 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:02:49.598 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) start.
17-03-17 18:02:49.728 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29275 776
17-03-17 18:02:49.878 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:02:49.968 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2181237920, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 18:02:49.968 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 18:02:49.968 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:49.968 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 18:02:49.968 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 18:02:49.968 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:49.968 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:02:49.968 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:02:49.968 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:02:49.978 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:02:50.068 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:02:50.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:02:50.068 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:02:50.188 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:02:50.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:02:50.188 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:02:50.188 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:02:50.188 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:02:50.188 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:02:50.188 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2181237920, 0x0, 418435064) start.
17-03-17 18:02:50.258 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:02:50.258 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:02:50.258 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 29275 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-17 18:02:50.258 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:02:50.258 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91162109375, Z-Position -0.133203897355366. ------
17-03-17 18:02:50.268 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:02:50.268 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13970 mm
17-03-17 18:02:50.268 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:02:50.268 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:02:50.268 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 18:02:50.268 -07 000000593 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 18:02:50.268 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30518, sync = True, waitForSettling = False)
17-03-17 18:02:50.268 -07 000000626 INF: Z Motor: Moving to -0.139702 mm, started at -0.133204 mm, distance = -6.50 um
17-03-17 18:02:50.278 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:02:50.278 -07 000000626 INF: FPGA: Xmit ZDACW 30518\n [Z Motor]
17-03-17 18:02:50.278 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:02:50.288 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:50.288 -07 000000626 INF: FPGA: 'ZDACW 30518' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:02:50.288 -07 000000480 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:02:50.298 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:02:50.298 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:02:50.298 -07 000000593 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:50.298 -07 000000593 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:02:50.298 -07 000000593 INF: Y Motor: Moving 1330 steps1
17-03-17 18:02:50.308 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:02:50.308 -07 000000486 INF: FPGA: Recv ZDACR 30518
17-03-17 18:02:50.318 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:02:50.318 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:02:50.318 -07 000000626 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 18:02:50.498 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:02:50.498 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:02:50.568 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2181237920, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:02:50.568 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:02:50.568 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:50.568 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:02:50.568 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:02:50.568 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:50.568 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:02:50.578 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:02:50.578 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 506 ms.
17-03-17 18:02:50.578 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:02:50.688 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 18:02:50.688 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 18:02:50.718 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:50.718 -07 000000576 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:02:50.728 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:02:50.728 -07 000000593 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:50.728 -07 000000593 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 18:02:50.728 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.831 mm, average velocity = 2.104 mm/sec
17-03-17 18:02:51.558 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:02:51.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:02:51.678 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:51.678 -07 000000561 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:02:51.688 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:02:51.688 -07 000000593 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:51.708 -07 000000593 INF: Y Motor: After move to 60.742607, error = -0.008720, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:02:51.708 -07 000000593 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:02:51.708 -07 000000593 INF: Y Motor: Moved to 60.7339 after 1433 ms (table move)
17-03-17 18:02:51.708 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139702 mm (DAC = 30518)
17-03-17 18:02:51.708 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:51.708 -07 000000561 INF: FPGA: Recv ZSGSRD 31030
17-03-17 18:02:51.718 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:02:51.718 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:51.718 -07 000000593 INF: FPGA: Recv ZSGSRD 31028
17-03-17 18:02:51.728 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:51.728 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:51.728 -07 000000561 INF: FPGA: Recv ZSGSRD 31034
17-03-17 18:02:51.738 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:51.738 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:51.738 -07 000000593 INF: FPGA: Recv ZSGSRD 31038
17-03-17 18:02:51.748 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:51.748 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:51.748 -07 000000627 INF: FPGA: Recv ZSGSRD 31039
17-03-17 18:02:51.758 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:51.758 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:51.758 -07 000000576 INF: FPGA: Recv ZSGSRD 31040
17-03-17 18:02:51.768 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:51.768 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:51.768 -07 000000627 INF: FPGA: Recv ZSGSRD 31044
17-03-17 18:02:51.778 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:51.778 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:51.778 -07 000000433 INF: FPGA: Recv ZSGSRD 31042
17-03-17 18:02:51.788 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:51.788 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:51.788 -07 000000561 INF: FPGA: Recv ZSGSRD 31034
17-03-17 18:02:51.798 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:51.798 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:51.798 -07 000000480 INF: FPGA: Recv ZSGSRD 31031
17-03-17 18:02:51.808 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:51.808 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:02:51.808 -07 000000593 INF: FPGA: Recv ZPIEZORD 26833
17-03-17 18:02:51.818 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:51.818 -07 000000623 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.657 V. Piezo Error = -9.2 V.
17-03-17 18:02:51.818 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.7 um, Read 10 ADC samples: Avg = 31036 (-138.9 uncal um), Error = 0.8 uncal um, Median = 31036 (-138.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 31028 (-138.9 uncal um), Max = 31044 (-139.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:02:51.818 -07 000000623 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31036, posNoise = 8, negNoise = 8
17-03-17 18:02:51.818 -07 000000623 INF: Z Motor: After move to -0.139702, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:02:51.818 -07 000000623 INF: Z Motor: Settle wait time = 1435 ms, measure time = 107 ms (allowed 150 ms), total time = 1542 ms
17-03-17 18:02:51.818 -07 000000623 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:02:51.868 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 18:02:51.868 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:02:51.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:02:51.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:02:51.868 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:02:51.868 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:02:51.868 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:02:51.868 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:02:51.868 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:02:51.868 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:02:51.878 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:02:51.878 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:02:51.888 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:02:51.888 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:02:51.888 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:02:51.938 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:02:52.138 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:02:52.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:02:52.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:02:52.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:02:52.178 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:02:52.178 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 18:02:52.178 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 18:02:52.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:02:52.268 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:52.268 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:02:52.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:02:52.278 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:02:52.278 -07 000000561 INF: Autofocus start
17-03-17 18:02:52.278 -07 000000561 INF: MeasureProfile start
17-03-17 18:02:52.278 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:02:52.288 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:02:52.288 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:02:52.288 -07 000000561 INF: MeasureProfile done
17-03-17 18:02:52.288 -07 000000561 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:02:52.288 -07 000000561 INF: Autofocus finished
17-03-17 18:02:52.488 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:02:52.488 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:02:52.488 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73388671875, Z-position -0.139705200042828. ----------
17-03-17 18:02:52.488 -07 000000610 INF: Cycle	8	Tile	2	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:02:52.498 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29026, sync = True, waitForSettling = True)
17-03-17 18:02:52.498 -07 000000610 INF: Z Motor: Moving to -0.132873 mm, started at -0.139705 mm, distance = 6.83 um
17-03-17 18:02:52.498 -07 000000610 INF: FPGA: Xmit ZDACW 29026\n [Z Motor]
17-03-17 18:02:52.498 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:02:52.508 -07 000000610 INF: FPGA: 'ZDACW 29026' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:52.508 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:02:52.508 -07 000000627 INF: FPGA: Recv ZDACR 29026
17-03-17 18:02:52.518 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:52.518 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:02:52.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:52.668 -07 000000593 INF: FPGA: Recv ZSGSRD 29980
17-03-17 18:02:52.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:02:52.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:52.678 -07 000000433 INF: FPGA: Recv ZSGSRD 29973
17-03-17 18:02:52.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:52.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:52.688 -07 000000623 INF: FPGA: Recv ZSGSRD 29972
17-03-17 18:02:52.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:52.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:52.698 -07 000000480 INF: FPGA: Recv ZSGSRD 29977
17-03-17 18:02:52.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:52.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:52.708 -07 000000627 INF: FPGA: Recv ZSGSRD 29976
17-03-17 18:02:52.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:52.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:52.718 -07 000000576 INF: FPGA: Recv ZSGSRD 29979
17-03-17 18:02:52.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:52.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:52.728 -07 000000593 INF: FPGA: Recv ZSGSRD 29962
17-03-17 18:02:52.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:52.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:52.738 -07 000000480 INF: FPGA: Recv ZSGSRD 29981
17-03-17 18:02:52.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:52.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:52.748 -07 000000627 INF: FPGA: Recv ZSGSRD 29976
17-03-17 18:02:52.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:52.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:52.758 -07 000000433 INF: FPGA: Recv ZSGSRD 29966
17-03-17 18:02:52.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:52.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:02:52.768 -07 000000593 INF: FPGA: Recv ZPIEZORD 25458
17-03-17 18:02:52.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:02:52.778 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.429 V. Piezo Error = -9.9 V.
17-03-17 18:02:52.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.9 um, Read 10 ADC samples: Avg = 29974 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29976 (-132.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 29962 (-132.0 uncal um), Max = 29981 (-132.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 18:02:52.778 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29974, posNoise = 7, negNoise = 12
17-03-17 18:02:52.778 -07 000000610 INF: Z Motor: After move to -0.132873, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:02:52.778 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:02:52.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:02:52.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:02:52.778 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:02:52.778 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:02:52.778 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:02:52.778 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:02:52.778 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:02:52.778 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:02:52.778 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:02:52.778 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:02:52.778 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:02:52.778 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:02:52.778 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:02:52.778 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:02:52.778 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:02:52.778 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:02:52.798 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:02:52.798 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:02:52.798 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:02:52.798 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:02:52.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 29202 150\n [Camera]
17-03-17 18:02:52.998 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:02:53.148 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 3.990831,
17-03-17 18:02:53.398 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:02:53.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:02:53.398 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:02:53.398 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:02:53.398 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) start.
17-03-17 18:02:53.398 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:02:53.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:02:53.398 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:02:53.398 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:02:53.398 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1049694256, 0x0, 418435064) start.
17-03-17 18:02:53.588 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29202 776
17-03-17 18:02:53.738 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:02:53.778 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1049694256, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:02:53.778 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:02:53.778 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:53.778 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 18:02:53.788 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:02:53.788 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:53.788 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:02:53.788 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:02:53.788 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:02:53.788 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:02:53.928 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:02:53.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:02:53.928 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:02:53.928 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:02:53.928 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1085116520, 0x0, 391868352) start.
17-03-17 18:02:53.928 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:02:53.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:02:53.928 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:02:53.928 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:02:53.928 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1120538784, 0x0, 418435064) start.
17-03-17 18:02:54.118 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:02:54.118 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:02:54.118 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 29202 150' command took 5 ms to send, 1302 ms to get response, and 1315 ms overall
17-03-17 18:02:54.118 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:02:54.118 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73388671875, Z-Position -0.132882686748278. ------
17-03-17 18:02:54.128 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:02:54.128 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13955 mm
17-03-17 18:02:54.128 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:02:54.128 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:02:54.128 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 18:02:54.128 -07 000000541 INF: Y Motor: Moving to 61.5726 mm, started at 60.7339 mm, delta = 0.8387 mm
17-03-17 18:02:54.128 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 30484, sync = True, waitForSettling = False)
17-03-17 18:02:54.128 -07 000000561 INF: Z Motor: Moving to -0.139547 mm, started at -0.132883 mm, distance = -6.66 um
17-03-17 18:02:54.138 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:54.138 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:54.138 -07 000000627 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:02:54.148 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:02:54.148 -07 000000541 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:54.148 -07 000000541 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:02:54.148 -07 000000541 INF: Y Motor: Moving 1342 steps-19
17-03-17 18:02:54.148 -07 000000561 INF: FPGA: Xmit ZDACW 30484\n [Z Motor]
17-03-17 18:02:54.148 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 18:02:54.158 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:02:54.158 -07 000000561 INF: FPGA: 'ZDACW 30484' command took 1 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:02:54.168 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:02:54.178 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:02:54.178 -07 000000576 INF: FPGA: Recv ZDACR 30484
17-03-17 18:02:54.188 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:02:54.188 -07 000000561 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 18:02:54.318 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1120538784, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 18:02:54.318 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:02:54.318 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:54.318 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1085116520, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:02:54.318 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:02:54.318 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:54.318 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:02:54.328 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:02:54.328 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:02:54.328 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:02:54.358 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:02:54.358 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:02:54.538 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 18:02:54.538 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:02:54.578 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:54.578 -07 000000623 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:02:54.588 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:02:54.588 -07 000000541 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:54.588 -07 000000541 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 18:02:54.588 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 18:02:55.538 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:55.538 -07 000000593 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:02:55.548 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:02:55.548 -07 000000541 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:55.568 -07 000000541 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:02:55.568 -07 000000541 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:02:55.568 -07 000000541 INF: Y Motor: Moved to 61.5645 after 1436 ms (table move)
17-03-17 18:02:55.568 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139547 mm (DAC = 30484)
17-03-17 18:02:55.568 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:55.568 -07 000000480 INF: FPGA: Recv ZSGSRD 31013
17-03-17 18:02:55.578 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:02:55.578 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:55.578 -07 000000541 INF: FPGA: Recv ZSGSRD 31006
17-03-17 18:02:55.588 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:55.588 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:55.588 -07 000000623 INF: FPGA: Recv ZSGSRD 31010
17-03-17 18:02:55.598 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:55.598 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:55.598 -07 000000627 INF: FPGA: Recv ZSGSRD 31010
17-03-17 18:02:55.608 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:55.608 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:55.608 -07 000000623 INF: FPGA: Recv ZSGSRD 31005
17-03-17 18:02:55.618 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:55.618 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:55.618 -07 000000627 INF: FPGA: Recv ZSGSRD 31027
17-03-17 18:02:55.628 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:55.628 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:55.628 -07 000000623 INF: FPGA: Recv ZSGSRD 31012
17-03-17 18:02:55.638 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:55.638 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:55.638 -07 000000627 INF: FPGA: Recv ZSGSRD 31011
17-03-17 18:02:55.648 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:55.648 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:55.648 -07 000000623 INF: FPGA: Recv ZSGSRD 31007
17-03-17 18:02:55.658 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:55.658 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:55.658 -07 000000623 INF: FPGA: Recv ZSGSRD 31009
17-03-17 18:02:55.668 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:55.668 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:02:55.668 -07 000000593 INF: FPGA: Recv ZPIEZORD 26861
17-03-17 18:02:55.678 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:55.678 -07 000000626 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.652 V. Piezo Error = -9.1 V.
17-03-17 18:02:55.678 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.5 um, Read 10 ADC samples: Avg = 31011 (-138.7 uncal um), Error = 0.8 uncal um, Median = 31010 (-138.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 31005 (-138.7 uncal um), Max = 31027 (-138.8 uncal um), Pos Noise = 16 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:02:55.678 -07 000000626 INF: Z Motor: ADC noise = 16, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31011, posNoise = 16, negNoise = 6
17-03-17 18:02:55.678 -07 000000626 INF: Z Motor: After move to -0.139547, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:02:55.678 -07 000000626 INF: Z Motor: Settle wait time = 1438 ms, measure time = 106 ms (allowed 150 ms), total time = 1544 ms
17-03-17 18:02:55.678 -07 000000626 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:02:55.728 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 18:02:55.728 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:02:55.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:02:55.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:02:55.728 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:02:55.728 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:02:55.728 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:02:55.728 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:02:55.728 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:02:55.728 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:02:55.738 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:02:55.738 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:02:55.748 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:02:55.748 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:02:55.748 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:02:55.798 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:02:55.998 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:02:55.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:02:55.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:02:55.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) start.
17-03-17 18:02:56.038 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:02:56.038 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 18:02:56.038 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 18:02:56.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:02:56.118 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:56.128 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:02:56.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:02:56.138 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:02:56.138 -07 000000627 INF: Autofocus start
17-03-17 18:02:56.138 -07 000000627 INF: MeasureProfile start
17-03-17 18:02:56.138 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:02:56.148 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:02:56.148 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:02:56.148 -07 000000627 INF: MeasureProfile done
17-03-17 18:02:56.148 -07 000000627 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:02:56.148 -07 000000627 INF: Autofocus finished
17-03-17 18:02:56.348 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:02:56.348 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:02:56.348 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.139544594739284. ----------
17-03-17 18:02:56.348 -07 000000610 INF: Cycle	8	Tile	3	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:02:56.358 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28991, sync = True, waitForSettling = True)
17-03-17 18:02:56.358 -07 000000610 INF: Z Motor: Moving to -0.132712 mm, started at -0.139545 mm, distance = 6.83 um
17-03-17 18:02:56.358 -07 000000610 INF: FPGA: Xmit ZDACW 28991\n [Z Motor]
17-03-17 18:02:56.358 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 18:02:56.368 -07 000000610 INF: FPGA: 'ZDACW 28991' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:56.368 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:02:56.368 -07 000000433 INF: FPGA: Recv ZDACR 28991
17-03-17 18:02:56.378 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:56.378 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:02:56.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:56.528 -07 000000593 INF: FPGA: Recv ZSGSRD 29953
17-03-17 18:02:56.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:02:56.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:56.538 -07 000000433 INF: FPGA: Recv ZSGSRD 29948
17-03-17 18:02:56.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:56.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:56.548 -07 000000561 INF: FPGA: Recv ZSGSRD 29949
17-03-17 18:02:56.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:56.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:56.558 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:02:56.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:02:56.558 -07 000000593 INF: FPGA: Recv ZSGSRD 29951
17-03-17 18:02:56.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:02:56.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:56.568 -07 000000576 INF: FPGA: Recv ZSGSRD 29947
17-03-17 18:02:56.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:56.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:56.578 -07 000000433 INF: FPGA: Recv ZSGSRD 29951
17-03-17 18:02:56.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:56.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:56.588 -07 000000409 INF: FPGA: Recv ZSGSRD 29944
17-03-17 18:02:56.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:56.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:56.598 -07 000000433 INF: FPGA: Recv ZSGSRD 29952
17-03-17 18:02:56.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:56.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:56.608 -07 000000627 INF: FPGA: Recv ZSGSRD 29939
17-03-17 18:02:56.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:56.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:56.618 -07 000000623 INF: FPGA: Recv ZSGSRD 29950
17-03-17 18:02:56.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:56.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:02:56.628 -07 000000409 INF: FPGA: Recv ZPIEZORD 25437
17-03-17 18:02:56.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:56.638 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.424 V. Piezo Error = -9.9 V.
17-03-17 18:02:56.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29948 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29950 (-131.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29939 (-131.9 uncal um), Max = 29953 (-132.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:02:56.638 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29948, posNoise = 5, negNoise = 9
17-03-17 18:02:56.638 -07 000000610 INF: Z Motor: After move to -0.132712, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:02:56.638 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:02:56.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:02:56.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:02:56.638 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:02:56.638 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:02:56.638 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:02:56.638 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:02:56.638 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:02:56.638 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:02:56.638 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:02:56.638 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:02:56.638 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:02:56.638 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:02:56.648 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:02:56.648 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:02:56.648 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:02:56.648 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:02:56.658 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:02:56.658 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:02:56.658 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:02:56.658 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:02:56.668 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 29168 150\n [Camera]
17-03-17 18:02:56.858 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:02:57.258 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:02:57.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:02:57.258 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:02:57.258 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:02:57.258 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:02:57.258 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:02:57.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:02:57.258 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:02:57.258 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:02:57.258 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:02:57.448 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29168 776
17-03-17 18:02:57.598 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:02:57.658 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 18:02:57.658 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:02:57.658 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:57.658 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 18:02:57.658 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:02:57.658 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:57.658 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:02:57.658 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:02:57.658 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:02:57.668 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:02:57.788 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:02:57.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:02:57.788 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:02:57.788 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:02:57.788 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:02:57.788 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:02:57.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:02:57.788 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:02:57.788 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:02:57.788 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:02:57.978 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:02:57.978 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:02:57.978 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 29168 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-17 18:02:57.978 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:02:57.978 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.564453125, Z-Position -0.132715657232592. ------
17-03-17 18:02:57.988 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13903 mm
17-03-17 18:02:57.988 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:02:57.988 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:02:57.988 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 18:02:57.988 -07 000000593 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 18:02:57.988 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 30371, sync = True, waitForSettling = False)
17-03-17 18:02:57.988 -07 000000433 INF: Z Motor: Moving to -0.139030 mm, started at -0.132716 mm, distance = -6.31 um
17-03-17 18:02:57.988 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:02:57.998 -07 000000433 INF: FPGA: Xmit ZDACW 30371\n [Z Motor]
17-03-17 18:02:57.998 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:02:57.998 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:02:58.008 -07 000000433 INF: FPGA: 'ZDACW 30371' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:02:58.008 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:58.008 -07 000000623 INF: FPGA: Recv YRDPOS 126085
17-03-17 18:02:58.018 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:02:58.018 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:02:58.018 -07 000000593 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:58.018 -07 000000593 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:02:58.018 -07 000000593 INF: Y Motor: Moving 1340 steps-17
17-03-17 18:02:58.028 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:02:58.028 -07 000000475 INF: FPGA: Recv ZDACR 30371
17-03-17 18:02:58.038 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:02:58.038 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:02:58.038 -07 000000433 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 18:02:58.178 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 18:02:58.178 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:02:58.178 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:58.188 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 18:02:58.188 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:02:58.188 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:58.188 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:02:58.188 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:02:58.188 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:02:58.198 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 18:02:58.218 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:02:58.218 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 18:02:58.408 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 18:02:58.408 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 18:02:58.438 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:58.448 -07 000000541 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:02:58.448 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:02:58.448 -07 000000593 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:58.448 -07 000000593 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:02:58.448 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.122 mm/sec
17-03-17 18:02:58.508 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 3.971733,
17-03-17 18:02:59.398 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:02:59.398 -07 000000433 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:02:59.408 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:02:59.408 -07 000000593 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:02:59.418 -07 000000593 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:02:59.418 -07 000000593 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:02:59.418 -07 000000593 INF: Y Motor: Moved to 62.3960 after 1433 ms (table move)
17-03-17 18:02:59.428 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139030 mm (DAC = 30371)
17-03-17 18:02:59.428 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:59.428 -07 000000627 INF: FPGA: Recv ZSGSRD 30936
17-03-17 18:02:59.438 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:02:59.438 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:59.438 -07 000000623 INF: FPGA: Recv ZSGSRD 30928
17-03-17 18:02:59.448 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:59.448 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:59.448 -07 000000458 INF: FPGA: Recv ZSGSRD 30935
17-03-17 18:02:59.458 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:59.458 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:59.458 -07 000000593 INF: FPGA: Recv ZSGSRD 30939
17-03-17 18:02:59.468 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:59.468 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:59.468 -07 000000476 INF: FPGA: Recv ZSGSRD 30931
17-03-17 18:02:59.478 -07 000000459 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:59.478 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:59.478 -07 000000561 INF: FPGA: Recv ZSGSRD 30939
17-03-17 18:02:59.488 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:59.488 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:59.488 -07 000000541 INF: FPGA: Recv ZSGSRD 30932
17-03-17 18:02:59.498 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:59.498 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:59.498 -07 000000627 INF: FPGA: Recv ZSGSRD 30926
17-03-17 18:02:59.508 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:59.508 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:59.508 -07 000000623 INF: FPGA: Recv ZSGSRD 30933
17-03-17 18:02:59.518 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:59.518 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:02:59.518 -07 000000551 INF: FPGA: Recv ZSGSRD 30930
17-03-17 18:02:59.528 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:59.528 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:02:59.528 -07 000000541 INF: FPGA: Recv ZPIEZORD 26762
17-03-17 18:02:59.538 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:02:59.538 -07 000000459 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.634 V. Piezo Error = -9.2 V.
17-03-17 18:02:59.538 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30933 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30932 (-138.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30926 (-138.2 uncal um), Max = 30939 (-138.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:02:59.538 -07 000000459 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30933, posNoise = 6, negNoise = 7
17-03-17 18:02:59.538 -07 000000459 INF: Z Motor: After move to -0.139030, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:02:59.538 -07 000000459 INF: Z Motor: Settle wait time = 1437 ms, measure time = 108 ms (allowed 150 ms), total time = 1545 ms
17-03-17 18:02:59.538 -07 000000459 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:02:59.588 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 18:02:59.588 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:02:59.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:02:59.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:02:59.588 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:02:59.588 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:02:59.588 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:02:59.588 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:02:59.588 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:02:59.588 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:02:59.598 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:02:59.598 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:02:59.608 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:02:59.608 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 18:02:59.608 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:02:59.658 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:02:59.858 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:02:59.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:02:59.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:02:59.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1172836112, 0x0, 559484976) start.
17-03-17 18:02:59.898 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:02:59.898 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 18:02:59.898 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 18:02:59.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1172836112, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:02:59.988 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:02:59.988 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:02:59.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:02:59.998 -07 000000476 INF: Autofocus start
17-03-17 18:02:59.998 -07 000000476 INF: MeasureProfile start
17-03-17 18:02:59.998 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:02:59.998 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:00.008 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:03:00.008 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:03:00.008 -07 000000476 INF: MeasureProfile done
17-03-17 18:03:00.008 -07 000000476 INF: X=48  Z correction [um]=0.2069503
17-03-17 18:03:00.008 -07 000000476 INF: Autofocus finished
17-03-17 18:03:00.208 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:03:00.208 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 197 ms to get response, and 206 ms overall
17-03-17 18:03:00.218 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.139043506192227. ----------
17-03-17 18:03:00.218 -07 000000610 INF: Cycle	8	Tile	4	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:03:00.218 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28929, sync = True, waitForSettling = True)
17-03-17 18:03:00.218 -07 000000610 INF: Z Motor: Moving to -0.132428 mm, started at -0.139044 mm, distance = 6.62 um
17-03-17 18:03:00.218 -07 000000610 INF: FPGA: Xmit ZDACW 28929\n [Z Motor]
17-03-17 18:03:00.218 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 18:03:00.228 -07 000000610 INF: FPGA: 'ZDACW 28929' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:03:00.228 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:00.228 -07 000000626 INF: FPGA: Recv ZDACR 28929
17-03-17 18:03:00.238 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:00.238 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:03:00.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:00.388 -07 000000476 INF: FPGA: Recv ZSGSRD 29914
17-03-17 18:03:00.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:00.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:00.398 -07 000000561 INF: FPGA: Recv ZSGSRD 29902
17-03-17 18:03:00.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:00.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:00.408 -07 000000576 INF: FPGA: Recv ZSGSRD 29901
17-03-17 18:03:00.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:00.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:00.418 -07 000000486 INF: FPGA: Recv ZSGSRD 29905
17-03-17 18:03:00.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:00.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:00.428 -07 000000476 INF: FPGA: Recv ZSGSRD 29907
17-03-17 18:03:00.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:00.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:00.438 -07 000000561 INF: FPGA: Recv ZSGSRD 29904
17-03-17 18:03:00.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:00.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:00.448 -07 000000482 INF: FPGA: Recv ZSGSRD 29900
17-03-17 18:03:00.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:00.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:00.458 -07 000000623 INF: FPGA: Recv ZSGSRD 29899
17-03-17 18:03:00.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:00.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:00.468 -07 000000551 INF: FPGA: Recv ZSGSRD 29908
17-03-17 18:03:00.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:00.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:00.478 -07 000000458 INF: FPGA: Recv ZSGSRD 29901
17-03-17 18:03:00.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:00.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:00.488 -07 000000475 INF: FPGA: Recv ZPIEZORD 25425
17-03-17 18:03:00.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:00.498 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.414 V. Piezo Error = -9.8 V.
17-03-17 18:03:00.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29904 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29903 (-131.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29899 (-131.6 uncal um), Max = 29914 (-131.7 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:03:00.498 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29904, posNoise = 10, negNoise = 5
17-03-17 18:03:00.498 -07 000000610 INF: Z Motor: After move to -0.132428, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:00.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 18:03:00.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:00.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:00.498 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:00.498 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:00.498 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:03:00.498 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:03:00.498 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:03:00.498 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:00.498 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 18:03:00.498 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:03:00.498 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:03:00.498 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:03:00.508 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:03:00.508 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:03:00.508 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:03:00.508 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:03:00.518 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:03:00.518 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:03:00.518 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:03:00.518 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 18:03:00.528 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 29106 150\n [Camera]
17-03-17 18:03:00.728 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:03:01.118 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:03:01.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:03:01.118 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:01.118 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:01.118 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 18:03:01.118 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:03:01.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:03:01.118 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:01.118 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:01.118 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 18:03:01.308 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29106 776
17-03-17 18:03:01.458 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:03:01.518 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 18:03:01.518 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:03:01.518 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:01.518 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 18:03:01.518 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:03:01.518 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:01.518 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:03:01.518 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:03:01.518 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:03:01.528 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:03:01.558 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:03:01.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:03:01.648 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:03:01.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:03:01.648 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:01.768 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:03:01.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:03:01.768 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:01.768 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:01.768 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:03:01.778 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:01.778 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:03:01.838 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:03:01.838 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:03:01.838 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 29106 150' command took 2 ms to send, 1304 ms to get response, and 1314 ms overall
17-03-17 18:03:01.838 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:03:01.838 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39599609375, Z-Position -0.132432991898355. ------
17-03-17 18:03:01.848 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:03:01.848 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13918 mm
17-03-17 18:03:01.848 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:03:01.848 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:01.848 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 18:03:01.848 -07 000000486 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 18:03:01.848 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 30405, sync = True, waitForSettling = False)
17-03-17 18:03:01.848 -07 000000482 INF: Z Motor: Moving to -0.139185 mm, started at -0.132433 mm, distance = -6.75 um
17-03-17 18:03:01.858 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:03:01.858 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:01.858 -07 000000551 INF: FPGA: Recv YRDPOS 127788
17-03-17 18:03:01.868 -07 000000482 INF: FPGA: Xmit ZDACW 30405\n [Z Motor]
17-03-17 18:03:01.868 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:03:01.868 -07 000000486 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:01.868 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 18:03:01.868 -07 000000486 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:03:01.868 -07 000000486 INF: Y Motor: Moving 1338 steps-14
17-03-17 18:03:01.878 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:03:01.878 -07 000000482 INF: FPGA: 'ZDACW 30405' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:03:01.888 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:03:01.898 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:01.898 -07 000000551 INF: FPGA: Recv ZDACR 30405
17-03-17 18:03:01.908 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:03:01.908 -07 000000482 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 18:03:02.078 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:03:02.078 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:03:02.168 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 18:03:02.168 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:03:02.168 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:02.168 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:03:02.168 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:03:02.168 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:02.178 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:03:02.178 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:03:02.178 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-17 18:03:02.178 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 18:03:02.258 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 18:03:02.258 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-17 18:03:02.288 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:02.298 -07 000000551 INF: FPGA: Recv YRDPOS 129484
17-03-17 18:03:02.298 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:03:02.298 -07 000000486 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:02.298 -07 000000486 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 18:03:02.298 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.837 mm, average velocity = 2.145 mm/sec
17-03-17 18:03:03.248 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:03.248 -07 000000626 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:03:03.258 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:03.258 -07 000000486 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:03.268 -07 000000486 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:03:03.268 -07 000000486 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:03:03.268 -07 000000486 INF: Y Motor: Moved to 63.2251 after 1423 ms (table move)
17-03-17 18:03:03.278 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139185 mm (DAC = 30405)
17-03-17 18:03:03.278 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:03.278 -07 000000551 INF: FPGA: Recv ZSGSRD 30964
17-03-17 18:03:03.288 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:03:03.288 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:03.288 -07 000000482 INF: FPGA: Recv ZSGSRD 30948
17-03-17 18:03:03.298 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:03.298 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:03.298 -07 000000551 INF: FPGA: Recv ZSGSRD 30953
17-03-17 18:03:03.308 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:03.308 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:03.308 -07 000000486 INF: FPGA: Recv ZSGSRD 30961
17-03-17 18:03:03.318 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:03.318 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:03.318 -07 000000459 INF: FPGA: Recv ZSGSRD 30959
17-03-17 18:03:03.328 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:03.328 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:03.328 -07 000000561 INF: FPGA: Recv ZSGSRD 30961
17-03-17 18:03:03.338 -07 000000458 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:03.338 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:03.338 -07 000000482 INF: FPGA: Recv ZSGSRD 30959
17-03-17 18:03:03.348 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:03.348 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:03.348 -07 000000561 INF: FPGA: Recv ZSGSRD 30957
17-03-17 18:03:03.358 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:03.358 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:03.358 -07 000000482 INF: FPGA: Recv ZSGSRD 30951
17-03-17 18:03:03.368 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:03.368 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:03.368 -07 000000626 INF: FPGA: Recv ZSGSRD 30949
17-03-17 18:03:03.378 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:03.378 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:03.378 -07 000000482 INF: FPGA: Recv ZPIEZORD 26831
17-03-17 18:03:03.388 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:03.388 -07 000000458 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.640 V. Piezo Error = -9.1 V.
17-03-17 18:03:03.388 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30956 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30958 (-138.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30948 (-138.3 uncal um), Max = 30964 (-138.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:03:03.388 -07 000000458 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30956, posNoise = 8, negNoise = 8
17-03-17 18:03:03.388 -07 000000458 INF: Z Motor: After move to -0.139185, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:03.388 -07 000000458 INF: Z Motor: Settle wait time = 1425 ms, measure time = 109 ms (allowed 150 ms), total time = 1534 ms
17-03-17 18:03:03.388 -07 000000458 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 18:03:03.438 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1588 ms
17-03-17 18:03:03.438 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:03:03.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:03.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:03.438 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:03.438 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:03.438 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:03:03.438 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:03.438 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:03:03.438 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:03:03.448 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:03:03.448 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:03:03.458 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:03:03.458 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 18:03:03.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:03:03.498 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:03:03.698 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:03:03.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:03:03.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:03:03.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-17 18:03:03.738 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:03:03.738 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 18:03:03.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 18:03:03.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:03:03.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:03.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:03:03.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:03:03.878 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 3.951279,
17-03-17 18:03:03.938 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:03:03.938 -07 000000626 INF: Autofocus start
17-03-17 18:03:03.938 -07 000000626 INF: MeasureProfile start
17-03-17 18:03:03.938 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:03.948 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:03:03.948 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:03:03.948 -07 000000626 INF: MeasureProfile done
17-03-17 18:03:03.948 -07 000000626 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:03:03.948 -07 000000626 INF: Autofocus finished
17-03-17 18:03:04.148 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:03:04.148 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:03:04.148 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.139191263071487. ----------
17-03-17 18:03:04.148 -07 000000610 INF: Cycle	8	Tile	5	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:03:04.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28900, sync = True, waitForSettling = True)
17-03-17 18:03:04.158 -07 000000610 INF: Z Motor: Moving to -0.132296 mm, started at -0.139191 mm, distance = 6.90 um
17-03-17 18:03:04.168 -07 000000610 INF: FPGA: Xmit ZDACW 28900\n [Z Motor]
17-03-17 18:03:04.168 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 18:03:04.178 -07 000000610 INF: FPGA: 'ZDACW 28900' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:03:04.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:04.178 -07 000000458 INF: FPGA: Recv ZDACR 28900
17-03-17 18:03:04.188 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:04.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:03:04.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:04.338 -07 000000482 INF: FPGA: Recv ZSGSRD 29885
17-03-17 18:03:04.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:04.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:04.348 -07 000000561 INF: FPGA: Recv ZSGSRD 29886
17-03-17 18:03:04.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:04.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:04.358 -07 000000482 INF: FPGA: Recv ZSGSRD 29878
17-03-17 18:03:04.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:04.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:04.368 -07 000000458 INF: FPGA: Recv ZSGSRD 29881
17-03-17 18:03:04.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:04.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:04.378 -07 000000551 INF: FPGA: Recv ZSGSRD 29879
17-03-17 18:03:04.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:04.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:04.388 -07 000000458 INF: FPGA: Recv ZSGSRD 29884
17-03-17 18:03:04.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:04.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:04.398 -07 000000486 INF: FPGA: Recv ZSGSRD 29888
17-03-17 18:03:04.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:04.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:04.408 -07 000000626 INF: FPGA: Recv ZSGSRD 29881
17-03-17 18:03:04.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:04.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:04.418 -07 000000482 INF: FPGA: Recv ZSGSRD 29885
17-03-17 18:03:04.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:04.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:04.428 -07 000000623 INF: FPGA: Recv ZSGSRD 29884
17-03-17 18:03:04.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:04.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:04.438 -07 000000551 INF: FPGA: Recv ZPIEZORD 25439
17-03-17 18:03:04.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:04.448 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.410 V. Piezo Error = -9.8 V.
17-03-17 18:03:04.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29883 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29884 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29878 (-131.5 uncal um), Max = 29888 (-131.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:03:04.448 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29883, posNoise = 5, negNoise = 5
17-03-17 18:03:04.448 -07 000000610 INF: Z Motor: After move to -0.132296, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:04.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 18:03:04.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:04.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:04.448 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:04.448 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:04.448 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:03:04.448 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:03:04.448 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:03:04.448 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:04.448 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:03:04.458 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:03:04.458 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:03:04.458 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:03:04.458 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:03:04.458 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:03:04.458 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:03:04.458 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:03:04.468 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:03:04.468 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:03:04.468 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:03:04.468 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:03:04.478 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 29076 150\n [Camera]
17-03-17 18:03:04.668 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:03:05.068 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:03:05.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:03:05.068 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:05.068 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:03:05.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:03:05.068 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:05.178 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:05.178 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1443674384, 0x0, 391868352) start.
17-03-17 18:03:05.178 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:05.178 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:03:05.258 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29076 776
17-03-17 18:03:05.408 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:03:05.568 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 18:03:05.568 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:03:05.568 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:05.568 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:03:05.568 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1443674384, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 18:03:05.568 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:03:05.568 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:05.578 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:03:05.578 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 508 ms.
17-03-17 18:03:05.578 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 508 ms.
17-03-17 18:03:05.598 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:03:05.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:03:05.598 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:05.598 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:03:05.598 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:05.598 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:03:05.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:03:05.598 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:05.598 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:05.598 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2181237920, 0x0, 418435064) start.
17-03-17 18:03:05.788 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:03:05.788 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:03:05.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 29076 150' command took 2 ms to send, 1304 ms to get response, and 1318 ms overall
17-03-17 18:03:05.788 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:03:05.788 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22509765625, Z-Position -0.132298083443378. ------
17-03-17 18:03:05.788 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:03:05.788 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13873 mm
17-03-17 18:03:05.788 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:03:05.798 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:05.798 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 18:03:05.798 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 18:03:05.798 -07 000000480 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 18:03:05.798 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:05.798 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 30306, sync = True, waitForSettling = False)
17-03-17 18:03:05.798 -07 000000482 INF: Z Motor: Moving to -0.138732 mm, started at -0.132298 mm, distance = -6.43 um
17-03-17 18:03:05.798 -07 000000626 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:03:05.808 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:03:05.808 -07 000000480 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:05.808 -07 000000480 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:03:05.808 -07 000000480 INF: Y Motor: Moving 1340 steps-16
17-03-17 18:03:05.808 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:03:05.818 -07 000000482 INF: FPGA: Xmit ZDACW 30306\n [Z Motor]
17-03-17 18:03:05.818 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 18:03:05.828 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:03:05.828 -07 000000482 INF: FPGA: 'ZDACW 30306' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:03:05.838 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:05.838 -07 000000576 INF: FPGA: Recv ZDACR 30306
17-03-17 18:03:05.848 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:03:05.848 -07 000000482 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 18:03:06.008 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2181237920, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 18:03:06.008 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:03:06.008 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:06.008 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 18:03:06.008 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:03:06.008 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:06.008 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:03:06.008 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-17 18:03:06.008 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:03:06.008 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:03:06.008 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 18:03:06.018 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 18:03:06.198 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 18:03:06.198 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:03:06.238 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:06.238 -07 000000482 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:03:06.248 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:06.248 -07 000000480 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:06.248 -07 000000480 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 18:03:06.248 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.838 mm, average velocity = 2.099 mm/sec
17-03-17 18:03:06.558 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:03:06.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:03:07.198 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:07.198 -07 000000486 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:03:07.208 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:07.208 -07 000000480 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:07.218 -07 000000480 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:03:07.218 -07 000000480 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:03:07.218 -07 000000480 INF: Y Motor: Moved to 64.0576 after 1421 ms (table move)
17-03-17 18:03:07.218 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138732 mm (DAC = 30306)
17-03-17 18:03:07.218 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:07.228 -07 000000576 INF: FPGA: Recv ZSGSRD 30895
17-03-17 18:03:07.228 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:03:07.228 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:07.228 -07 000000482 INF: FPGA: Recv ZSGSRD 30891
17-03-17 18:03:07.238 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:03:07.238 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:07.238 -07 000000476 INF: FPGA: Recv ZSGSRD 30887
17-03-17 18:03:07.248 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:07.248 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:07.248 -07 000000482 INF: FPGA: Recv ZSGSRD 30889
17-03-17 18:03:07.258 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:07.258 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:07.258 -07 000000480 INF: FPGA: Recv ZSGSRD 30890
17-03-17 18:03:07.268 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:07.268 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:07.268 -07 000000475 INF: FPGA: Recv ZSGSRD 30892
17-03-17 18:03:07.278 -07 000000458 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:07.278 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:07.278 -07 000000486 INF: FPGA: Recv ZSGSRD 30888
17-03-17 18:03:07.288 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:07.288 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:07.288 -07 000000482 INF: FPGA: Recv ZSGSRD 30877
17-03-17 18:03:07.298 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:07.298 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:07.298 -07 000000476 INF: FPGA: Recv ZSGSRD 30888
17-03-17 18:03:07.308 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:07.308 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:07.308 -07 000000482 INF: FPGA: Recv ZSGSRD 30882
17-03-17 18:03:07.318 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:07.318 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:07.318 -07 000000486 INF: FPGA: Recv ZPIEZORD 26756
17-03-17 18:03:07.328 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:07.328 -07 000000458 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.624 V. Piezo Error = -9.1 V.
17-03-17 18:03:07.328 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30888 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30888 (-138.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30877 (-137.9 uncal um), Max = 30895 (-138.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 18:03:07.328 -07 000000458 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30888, posNoise = 7, negNoise = 11
17-03-17 18:03:07.328 -07 000000458 INF: Z Motor: After move to -0.138732, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:07.328 -07 000000458 INF: Z Motor: Settle wait time = 1423 ms, measure time = 102 ms (allowed 150 ms), total time = 1525 ms
17-03-17 18:03:07.328 -07 000000458 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 18:03:07.378 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1580 ms
17-03-17 18:03:07.378 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:03:07.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:07.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:07.378 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:07.378 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:07.378 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:03:07.378 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:07.378 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:03:07.378 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:03:07.388 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:03:07.388 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:03:07.398 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:03:07.398 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:03:07.398 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:03:07.448 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:03:07.648 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:03:07.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:03:07.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:03:07.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:03:07.688 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:03:07.688 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 18:03:07.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 18:03:07.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:03:07.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:07.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:03:07.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:03:07.788 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:03:07.788 -07 000000486 INF: Autofocus start
17-03-17 18:03:07.788 -07 000000486 INF: MeasureProfile start
17-03-17 18:03:07.788 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:07.798 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:03:07.798 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:03:07.798 -07 000000486 INF: MeasureProfile done
17-03-17 18:03:07.798 -07 000000486 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:03:07.798 -07 000000486 INF: Autofocus finished
17-03-17 18:03:07.998 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:03:07.998 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:03:07.998 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.138754416645847. ----------
17-03-17 18:03:07.998 -07 000000610 INF: Cycle	8	Tile	6	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:03:07.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28831, sync = True, waitForSettling = True)
17-03-17 18:03:08.008 -07 000000610 INF: Z Motor: Moving to -0.131980 mm, started at -0.138754 mm, distance = 6.77 um
17-03-17 18:03:08.008 -07 000000610 INF: FPGA: Xmit ZDACW 28831\n [Z Motor]
17-03-17 18:03:08.008 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 18:03:08.018 -07 000000610 INF: FPGA: 'ZDACW 28831' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:08.018 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:08.018 -07 000000476 INF: FPGA: Recv ZDACR 28831
17-03-17 18:03:08.028 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:08.028 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:03:08.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:08.178 -07 000000576 INF: FPGA: Recv ZSGSRD 29840
17-03-17 18:03:08.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:08.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:08.188 -07 000000458 INF: FPGA: Recv ZSGSRD 29836
17-03-17 18:03:08.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:08.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:08.198 -07 000000480 INF: FPGA: Recv ZSGSRD 29834
17-03-17 18:03:08.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:08.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:08.208 -07 000000476 INF: FPGA: Recv ZSGSRD 29829
17-03-17 18:03:08.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:08.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:08.218 -07 000000475 INF: FPGA: Recv ZSGSRD 29833
17-03-17 18:03:08.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:08.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:08.228 -07 000000458 INF: FPGA: Recv ZSGSRD 29839
17-03-17 18:03:08.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:08.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:08.238 -07 000000459 INF: FPGA: Recv ZSGSRD 29833
17-03-17 18:03:08.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:08.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:08.248 -07 000000482 INF: FPGA: Recv ZSGSRD 29836
17-03-17 18:03:08.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:08.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:08.258 -07 000000475 INF: FPGA: Recv ZSGSRD 29834
17-03-17 18:03:08.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:08.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:08.268 -07 000000482 INF: FPGA: Recv ZSGSRD 29840
17-03-17 18:03:08.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:08.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:08.278 -07 000000475 INF: FPGA: Recv ZPIEZORD 25359
17-03-17 18:03:08.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:08.288 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.399 V. Piezo Error = -9.8 V.
17-03-17 18:03:08.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29835 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29835 (-131.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29829 (-131.2 uncal um), Max = 29840 (-131.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:03:08.288 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29835, posNoise = 5, negNoise = 6
17-03-17 18:03:08.288 -07 000000610 INF: Z Motor: After move to -0.131980, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:08.288 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:03:08.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:08.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:08.288 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:08.288 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:08.288 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:03:08.288 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:08.288 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:03:08.288 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:03:08.288 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:03:08.288 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:03:08.288 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 18:03:08.288 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:03:08.298 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:03:08.298 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:03:08.298 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:03:08.298 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:03:08.308 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:03:08.308 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:03:08.308 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:03:08.308 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:03:08.308 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 29007 150\n [Camera]
17-03-17 18:03:08.508 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 18:03:08.898 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:03:08.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:03:08.898 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:08.908 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:08.908 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) start.
17-03-17 18:03:08.908 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:03:08.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:03:08.908 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:08.908 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:08.908 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1479096648, 0x0, 418435064) start.
17-03-17 18:03:09.098 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29007 776
17-03-17 18:03:09.238 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 4.031682,
17-03-17 18:03:09.248 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:03:09.298 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 18:03:09.298 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:03:09.298 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:09.298 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1479096648, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 18:03:09.298 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:03:09.298 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:09.298 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:03:09.298 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:03:09.298 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:03:09.308 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:03:09.438 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:03:09.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:03:09.438 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:09.438 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:09.438 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1049694256, 0x0, 391868352) start.
17-03-17 18:03:09.438 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:03:09.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:03:09.438 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:09.438 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:09.438 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1085116520, 0x0, 418435064) start.
17-03-17 18:03:09.628 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:03:09.628 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:03:09.628 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 29007 150' command took 2 ms to send, 1302 ms to get response, and 1314 ms overall
17-03-17 18:03:09.628 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:03:09.628 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.131989721260573. ------
17-03-17 18:03:09.628 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:03:09.628 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13850 mm
17-03-17 18:03:09.628 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:03:09.628 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 18:03:09.628 -07 000000409 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 18:03:09.628 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 30255, sync = True, waitForSettling = False)
17-03-17 18:03:09.628 -07 000000475 INF: Z Motor: Moving to -0.138499 mm, started at -0.131990 mm, distance = -6.51 um
17-03-17 18:03:09.628 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:09.638 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:03:09.638 -07 000000475 INF: FPGA: Xmit ZDACW 30255\n [Z Motor]
17-03-17 18:03:09.638 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:03:09.648 -07 000000475 INF: FPGA: 'ZDACW 30255' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:09.648 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:09.648 -07 000000482 INF: FPGA: Recv ZDACR 30255
17-03-17 18:03:09.658 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:09.658 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:09.658 -07 000000475 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 18:03:09.658 -07 000000593 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:03:09.668 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:03:09.668 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 18:03:09.668 -07 000000409 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:09.668 -07 000000409 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:03:09.668 -07 000000409 INF: Y Motor: Moving 1336 steps-10
17-03-17 18:03:09.678 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:03:09.838 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1049694256, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 18:03:09.838 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:03:09.838 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:09.838 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1085116520, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 18:03:09.838 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 18:03:09.838 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:09.848 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:03:09.848 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:03:09.848 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 18:03:09.848 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 18:03:09.868 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:03:09.868 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-17 18:03:10.048 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 18:03:10.048 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 18:03:10.078 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:10.088 -07 000000459 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:03:10.088 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:03:10.088 -07 000000409 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:10.088 -07 000000409 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:03:10.088 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.835 mm, average velocity = 2.152 mm/sec
17-03-17 18:03:11.038 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:11.038 -07 000000458 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:03:11.048 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:11.048 -07 000000409 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:11.058 -07 000000409 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:03:11.058 -07 000000409 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:03:11.058 -07 000000409 INF: Y Motor: Moved to 64.8794 after 1430 ms (table move)
17-03-17 18:03:11.068 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138499 mm (DAC = 30255)
17-03-17 18:03:11.068 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:11.068 -07 000000476 INF: FPGA: Recv ZSGSRD 30858
17-03-17 18:03:11.078 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:03:11.078 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:11.078 -07 000000593 INF: FPGA: Recv ZSGSRD 30839
17-03-17 18:03:11.088 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:11.088 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:11.088 -07 000000409 INF: FPGA: Recv ZSGSRD 30845
17-03-17 18:03:11.098 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:11.098 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:11.098 -07 000000458 INF: FPGA: Recv ZSGSRD 30842
17-03-17 18:03:11.108 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:11.108 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:11.108 -07 000000561 INF: FPGA: Recv ZSGSRD 30850
17-03-17 18:03:11.118 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:11.118 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:11.118 -07 000000409 INF: FPGA: Recv ZSGSRD 30849
17-03-17 18:03:11.128 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:11.128 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:11.128 -07 000000486 INF: FPGA: Recv ZSGSRD 30850
17-03-17 18:03:11.138 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:11.138 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:11.138 -07 000000458 INF: FPGA: Recv ZSGSRD 30853
17-03-17 18:03:11.148 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:11.148 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:11.148 -07 000000480 INF: FPGA: Recv ZSGSRD 30841
17-03-17 18:03:11.158 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:11.158 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:11.158 -07 000000459 INF: FPGA: Recv ZSGSRD 30838
17-03-17 18:03:11.168 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:11.168 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:11.168 -07 000000480 INF: FPGA: Recv ZPIEZORD 26650
17-03-17 18:03:11.178 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:11.178 -07 000000627 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.617 V. Piezo Error = -9.2 V.
17-03-17 18:03:11.178 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30846 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30847 (-137.7 uncal um), StdDev = 7 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30838 (-137.6 uncal um), Max = 30858 (-137.8 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:03:11.178 -07 000000627 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30846, posNoise = 12, negNoise = 8
17-03-17 18:03:11.178 -07 000000627 INF: Z Motor: After move to -0.138499, error = 0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:11.178 -07 000000627 INF: Z Motor: Settle wait time = 1433 ms, measure time = 108 ms (allowed 150 ms), total time = 1541 ms
17-03-17 18:03:11.178 -07 000000627 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:03:11.228 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 18:03:11.228 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:03:11.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:11.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:11.228 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:11.228 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:11.228 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:03:11.228 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:11.228 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:03:11.228 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:03:11.238 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 18:03:11.238 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:03:11.248 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:03:11.248 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:03:11.248 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:03:11.298 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:03:11.498 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:03:11.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:03:11.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:03:11.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2252082448, 0x0, 559484976) start.
17-03-17 18:03:11.538 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:03:11.538 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 18:03:11.538 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 18:03:11.558 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:03:11.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2252082448, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:03:11.628 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:11.628 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:03:11.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:03:11.628 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:03:11.638 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:03:11.638 -07 000000476 INF: Autofocus start
17-03-17 18:03:11.638 -07 000000476 INF: MeasureProfile start
17-03-17 18:03:11.638 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:11.648 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:03:11.648 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:03:11.648 -07 000000476 INF: MeasureProfile done
17-03-17 18:03:11.648 -07 000000476 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:03:11.648 -07 000000476 INF: Autofocus finished
17-03-17 18:03:11.848 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:03:11.848 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:03:11.848 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.138484599735893. ----------
17-03-17 18:03:11.848 -07 000000610 INF: Cycle	8	Tile	7	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:03:11.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28763, sync = True, waitForSettling = True)
17-03-17 18:03:11.858 -07 000000610 INF: Z Motor: Moving to -0.131669 mm, started at -0.138485 mm, distance = 6.82 um
17-03-17 18:03:11.858 -07 000000610 INF: FPGA: Xmit ZDACW 28763\n [Z Motor]
17-03-17 18:03:11.858 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:03:11.868 -07 000000610 INF: FPGA: 'ZDACW 28763' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:11.868 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:11.868 -07 000000627 INF: FPGA: Recv ZDACR 28763
17-03-17 18:03:11.878 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:11.878 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:03:12.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:12.028 -07 000000482 INF: FPGA: Recv ZSGSRD 29788
17-03-17 18:03:12.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:12.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:12.038 -07 000000476 INF: FPGA: Recv ZSGSRD 29783
17-03-17 18:03:12.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:12.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:12.048 -07 000000561 INF: FPGA: Recv ZSGSRD 29785
17-03-17 18:03:12.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:12.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:12.058 -07 000000627 INF: FPGA: Recv ZSGSRD 29785
17-03-17 18:03:12.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:12.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:12.068 -07 000000458 INF: FPGA: Recv ZSGSRD 29781
17-03-17 18:03:12.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:12.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:12.078 -07 000000476 INF: FPGA: Recv ZSGSRD 29791
17-03-17 18:03:12.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:12.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:12.088 -07 000000480 INF: FPGA: Recv ZSGSRD 29780
17-03-17 18:03:12.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:12.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:12.098 -07 000000476 INF: FPGA: Recv ZSGSRD 29784
17-03-17 18:03:12.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:12.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:12.108 -07 000000458 INF: FPGA: Recv ZSGSRD 29789
17-03-17 18:03:12.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:12.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:12.118 -07 000000476 INF: FPGA: Recv ZSGSRD 29788
17-03-17 18:03:12.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:12.128 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:12.128 -07 000000561 INF: FPGA: Recv ZPIEZORD 25276
17-03-17 18:03:12.138 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:12.138 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.389 V. Piezo Error = -9.9 V.
17-03-17 18:03:12.138 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29785 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29785 (-130.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29780 (-130.9 uncal um), Max = 29791 (-130.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:03:12.138 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29785, posNoise = 6, negNoise = 5
17-03-17 18:03:12.138 -07 000000610 INF: Z Motor: After move to -0.131669, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:12.138 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:03:12.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:12.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:12.138 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:12.138 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:03:12.138 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:12.138 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:03:12.138 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:03:12.138 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:12.138 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:03:12.138 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:03:12.138 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 18:03:12.138 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:03:12.148 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:03:12.148 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:03:12.148 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:03:12.148 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:03:12.158 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:03:12.158 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:03:12.158 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:03:12.158 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:03:12.158 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28940 150\n [Camera]
17-03-17 18:03:12.358 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:03:12.748 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:03:12.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:03:12.758 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:12.758 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:12.758 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1120538784, 0x0, 391868352) start.
17-03-17 18:03:12.758 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:03:12.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:03:12.758 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:12.758 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:12.758 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:03:12.948 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28940 776
17-03-17 18:03:13.098 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:03:13.158 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1120538784, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:03:13.158 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:03:13.158 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:13.158 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 18:03:13.158 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:03:13.158 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:13.158 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:03:13.158 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:03:13.158 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:03:13.168 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:03:13.288 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:03:13.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:03:13.288 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:13.288 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:13.288 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 18:03:13.288 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:03:13.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:03:13.288 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:13.288 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:13.288 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 18:03:13.478 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:03:13.478 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:03:13.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28940 150' command took 2 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-17 18:03:13.478 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:03:13.478 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.131668510653485. ------
17-03-17 18:03:13.478 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:03:13.478 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13833 mm
17-03-17 18:03:13.478 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:03:13.478 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 18:03:13.488 -07 000000627 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 18:03:13.488 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:13.488 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:13.488 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:03:13.488 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 30218, sync = True, waitForSettling = False)
17-03-17 18:03:13.488 -07 000000593 INF: Z Motor: Moving to -0.138329 mm, started at -0.131669 mm, distance = -6.66 um
17-03-17 18:03:13.488 -07 000000561 INF: FPGA: Recv YRDPOS 132874
17-03-17 18:03:13.498 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:13.498 -07 000000593 INF: FPGA: Xmit ZDACW 30218\n [Z Motor]
17-03-17 18:03:13.498 -07 000000627 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:13.628 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:03:13.628 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 18:03:13.628 -07 000000593 INF: FPGA: 'ZDACW 30218' command took 0 ms to send, 0 ms to get response, and 144 ms overall
17-03-17 18:03:13.628 -07 000000627 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:03:13.628 -07 000000627 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:03:13.638 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:13.638 -07 000000561 INF: FPGA: Recv ZDACR 30218
17-03-17 18:03:13.648 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:03:13.648 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:03:13.648 -07 000000593 INF: Z Motor: MoveAbsStepped took 159 ms (did NOT wait for settling yet))
17-03-17 18:03:13.688 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 18:03:13.688 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:03:13.688 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:13.698 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 18:03:13.698 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 18:03:13.698 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:13.698 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:03:13.698 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:03:13.698 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 18:03:13.708 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 18:03:13.828 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:03:13.828 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 347 ms overall
17-03-17 18:03:14.018 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 18:03:14.018 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 18:03:14.058 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:14.058 -07 000000476 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:03:14.068 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:14.068 -07 000000627 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:14.068 -07 000000627 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 18:03:14.068 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.843 mm, average velocity = 2.157 mm/sec
17-03-17 18:03:14.598 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 4.023489,
17-03-17 18:03:15.018 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:15.018 -07 000000476 INF: FPGA: Recv YRDPOS 134585
17-03-17 18:03:15.028 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:15.028 -07 000000627 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:15.038 -07 000000627 INF: Y Motor: After move to 65.722610, error = -0.007278, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:03:15.038 -07 000000627 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:03:15.038 -07 000000627 INF: Y Motor: Moved to 65.7153 after 1559 ms (table move)
17-03-17 18:03:15.048 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138329 mm (DAC = 30218)
17-03-17 18:03:15.048 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:15.048 -07 000000458 INF: FPGA: Recv ZSGSRD 30827
17-03-17 18:03:15.058 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:03:15.058 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:15.058 -07 000000541 INF: FPGA: Recv ZSGSRD 30823
17-03-17 18:03:15.068 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:15.068 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:15.068 -07 000000459 INF: FPGA: Recv ZSGSRD 30817
17-03-17 18:03:15.078 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:15.078 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:15.078 -07 000000626 INF: FPGA: Recv ZSGSRD 30828
17-03-17 18:03:15.088 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:15.088 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:15.088 -07 000000486 INF: FPGA: Recv ZSGSRD 30832
17-03-17 18:03:15.098 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:15.098 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:15.098 -07 000000433 INF: FPGA: Recv ZSGSRD 30817
17-03-17 18:03:15.108 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:15.108 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:15.108 -07 000000623 INF: FPGA: Recv ZSGSRD 30827
17-03-17 18:03:15.118 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:15.118 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:15.118 -07 000000626 INF: FPGA: Recv ZSGSRD 30817
17-03-17 18:03:15.128 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:15.128 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:15.128 -07 000000593 INF: FPGA: Recv ZSGSRD 30818
17-03-17 18:03:15.138 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:15.138 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:15.138 -07 000000541 INF: FPGA: Recv ZSGSRD 30823
17-03-17 18:03:15.148 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:15.148 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:15.148 -07 000000576 INF: FPGA: Recv ZPIEZORD 26684
17-03-17 18:03:15.158 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:15.158 -07 000000482 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.611 V. Piezo Error = -9.1 V.
17-03-17 18:03:15.158 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30823 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30823 (-137.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30817 (-137.5 uncal um), Max = 30832 (-137.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:03:15.158 -07 000000482 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30823, posNoise = 9, negNoise = 6
17-03-17 18:03:15.158 -07 000000482 INF: Z Motor: After move to -0.138329, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:15.158 -07 000000482 INF: Z Motor: Settle wait time = 1563 ms, measure time = 106 ms (allowed 150 ms), total time = 1669 ms
17-03-17 18:03:15.158 -07 000000482 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:03:15.208 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1722 ms
17-03-17 18:03:15.208 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:03:15.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:15.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:15.208 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:15.208 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:15.208 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:03:15.208 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:15.218 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:03:15.218 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:03:15.218 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:03:15.218 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:03:15.228 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:03:15.228 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:03:15.248 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:03:15.288 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:03:15.488 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:03:15.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:03:15.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:03:15.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:03:15.528 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:03:15.528 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 18:03:15.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 301 ms overall
17-03-17 18:03:15.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 18:03:15.608 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:15.618 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:03:15.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 18:03:15.628 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:03:15.628 -07 000000482 INF: Autofocus start
17-03-17 18:03:15.628 -07 000000482 INF: MeasureProfile start
17-03-17 18:03:15.628 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:15.638 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:03:15.638 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:03:15.638 -07 000000482 INF: MeasureProfile done
17-03-17 18:03:15.638 -07 000000482 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:03:15.638 -07 000000482 INF: Autofocus finished
17-03-17 18:03:15.838 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:03:15.838 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:03:15.838 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71533203125, Z-position -0.138336842856633. ----------
17-03-17 18:03:15.838 -07 000000610 INF: Cycle	8	Tile	8	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:03:15.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28713, sync = True, waitForSettling = True)
17-03-17 18:03:15.848 -07 000000610 INF: Z Motor: Moving to -0.131440 mm, started at -0.138337 mm, distance = 6.90 um
17-03-17 18:03:15.848 -07 000000610 INF: FPGA: Xmit ZDACW 28713\n [Z Motor]
17-03-17 18:03:15.848 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 18:03:15.858 -07 000000610 INF: FPGA: 'ZDACW 28713' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:03:15.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:15.858 -07 000000458 INF: FPGA: Recv ZDACR 28713
17-03-17 18:03:15.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:15.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:03:16.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:16.018 -07 000000433 INF: FPGA: Recv ZSGSRD 29751
17-03-17 18:03:16.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:16.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:16.028 -07 000000561 INF: FPGA: Recv ZSGSRD 29753
17-03-17 18:03:16.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:16.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:16.038 -07 000000476 INF: FPGA: Recv ZSGSRD 29751
17-03-17 18:03:16.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:16.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:16.048 -07 000000626 INF: FPGA: Recv ZSGSRD 29754
17-03-17 18:03:16.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:16.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:16.058 -07 000000433 INF: FPGA: Recv ZSGSRD 29755
17-03-17 18:03:16.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:16.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:16.068 -07 000000482 INF: FPGA: Recv ZSGSRD 29745
17-03-17 18:03:16.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:16.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:16.078 -07 000000476 INF: FPGA: Recv ZSGSRD 29748
17-03-17 18:03:16.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:16.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:16.088 -07 000000561 INF: FPGA: Recv ZSGSRD 29750
17-03-17 18:03:16.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:16.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:16.098 -07 000000433 INF: FPGA: Recv ZSGSRD 29751
17-03-17 18:03:16.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:16.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:16.108 -07 000000626 INF: FPGA: Recv ZSGSRD 29752
17-03-17 18:03:16.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:16.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:16.118 -07 000000476 INF: FPGA: Recv ZPIEZORD 25253
17-03-17 18:03:16.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:16.128 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.381 V. Piezo Error = -9.9 V.
17-03-17 18:03:16.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29751 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29751 (-130.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29745 (-130.6 uncal um), Max = 29755 (-130.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:03:16.128 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29751, posNoise = 4, negNoise = 6
17-03-17 18:03:16.128 -07 000000610 INF: Z Motor: After move to -0.131440, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:16.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:03:16.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:16.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:16.128 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:16.128 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:16.128 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:03:16.128 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:03:16.128 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:16.128 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:03:16.128 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:03:16.128 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:03:16.128 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:03:16.128 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:03:16.138 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:03:16.138 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:03:16.138 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:03:16.138 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:03:16.148 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:03:16.148 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:03:16.148 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:03:16.148 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:03:16.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28889 150\n [Camera]
17-03-17 18:03:16.348 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:03:16.558 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:03:16.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:03:16.738 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:03:16.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:03:16.738 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:16.738 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:03:16.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:03:16.748 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:16.748 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2181237920, 0x0, 391868352) start.
17-03-17 18:03:16.748 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:16.758 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:16.758 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) start.
17-03-17 18:03:16.928 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28889 776
17-03-17 18:03:17.078 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:03:17.138 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2181237920, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:03:17.138 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:03:17.138 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:17.138 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:03:17.138 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:03:17.138 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:17.138 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:03:17.138 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:03:17.138 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:03:17.148 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:03:17.268 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:03:17.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:03:17.268 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:17.268 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:03:17.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:03:17.268 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:17.268 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:17.268 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:03:17.398 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:17.398 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 18:03:17.458 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:03:17.458 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:03:17.458 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28889 150' command took 2 ms to send, 1307 ms to get response, and 1314 ms overall
17-03-17 18:03:17.458 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:03:17.458 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71533203125, Z-Position -0.131450087440665. ------
17-03-17 18:03:17.468 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:03:17.468 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13776 mm
17-03-17 18:03:17.468 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:03:17.468 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 18:03:17.468 -07 000000541 INF: Y Motor: Moving to 66.5526 mm, started at 65.7153 mm, delta = 0.8373 mm
17-03-17 18:03:17.468 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30094, sync = True, waitForSettling = False)
17-03-17 18:03:17.468 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:17.468 -07 000000480 INF: Z Motor: Moving to -0.137762 mm, started at -0.131450 mm, distance = -6.31 um
17-03-17 18:03:17.478 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:03:17.478 -07 000000480 INF: FPGA: Xmit ZDACW 30094\n [Z Motor]
17-03-17 18:03:17.478 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 18:03:17.488 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:17.488 -07 000000480 INF: FPGA: 'ZDACW 30094' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:03:17.488 -07 000000482 INF: FPGA: Recv YRDPOS 134585
17-03-17 18:03:17.498 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:03:17.498 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:03:17.498 -07 000000541 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:17.498 -07 000000541 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:03:17.498 -07 000000541 INF: Y Motor: Moving 1340 steps-16
17-03-17 18:03:17.508 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:17.508 -07 000000459 INF: FPGA: Recv ZDACR 30094
17-03-17 18:03:17.518 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:03:17.518 -07 000000480 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 18:03:17.518 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:03:17.678 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 18:03:17.678 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 18:03:17.678 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:17.678 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:03:17.688 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 18:03:17.698 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:03:17.698 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 18:03:17.798 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:03:17.798 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:03:17.798 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:17.798 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:03:17.798 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 533 ms.
17-03-17 18:03:17.888 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 18:03:17.888 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 18:03:17.918 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:17.928 -07 000000459 INF: FPGA: Recv YRDPOS 136273
17-03-17 18:03:17.928 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:03:17.928 -07 000000541 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:17.928 -07 000000541 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:03:17.928 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.837 mm, average velocity = 2.120 mm/sec
17-03-17 18:03:18.878 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:18.878 -07 000000561 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:03:18.888 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:18.888 -07 000000541 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:18.898 -07 000000541 INF: Y Motor: After move to 66.552605, error = -0.012566, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:03:18.898 -07 000000541 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:03:18.898 -07 000000541 INF: Y Motor: Moved to 66.5400 after 1433 ms (table move)
17-03-17 18:03:18.908 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137762 mm (DAC = 30094)
17-03-17 18:03:18.908 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:18.908 -07 000000409 INF: FPGA: Recv ZSGSRD 30740
17-03-17 18:03:18.918 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:03:18.918 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:18.918 -07 000000476 INF: FPGA: Recv ZSGSRD 30726
17-03-17 18:03:18.928 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:18.928 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:18.928 -07 000000561 INF: FPGA: Recv ZSGSRD 30734
17-03-17 18:03:18.938 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:18.938 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:18.938 -07 000000541 INF: FPGA: Recv ZSGSRD 30733
17-03-17 18:03:18.948 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:18.948 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:18.948 -07 000000409 INF: FPGA: Recv ZSGSRD 30737
17-03-17 18:03:18.958 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:18.958 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:18.958 -07 000000626 INF: FPGA: Recv ZSGSRD 30737
17-03-17 18:03:18.968 -07 000000433 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:18.968 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:18.968 -07 000000482 INF: FPGA: Recv ZSGSRD 30739
17-03-17 18:03:18.978 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:18.978 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:18.978 -07 000000561 INF: FPGA: Recv ZSGSRD 30733
17-03-17 18:03:18.988 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:18.988 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:18.988 -07 000000476 INF: FPGA: Recv ZSGSRD 30727
17-03-17 18:03:18.998 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:18.998 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:18.998 -07 000000626 INF: FPGA: Recv ZSGSRD 30735
17-03-17 18:03:19.008 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:19.008 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:19.008 -07 000000482 INF: FPGA: Recv ZPIEZORD 26564
17-03-17 18:03:19.018 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:19.018 -07 000000433 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.592 V. Piezo Error = -9.2 V.
17-03-17 18:03:19.018 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30734 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30734 (-137.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30726 (-136.9 uncal um), Max = 30740 (-137.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:03:19.018 -07 000000433 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30734, posNoise = 6, negNoise = 8
17-03-17 18:03:19.018 -07 000000433 INF: Z Motor: After move to -0.137762, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:19.018 -07 000000433 INF: Z Motor: Settle wait time = 1435 ms, measure time = 108 ms (allowed 150 ms), total time = 1543 ms
17-03-17 18:03:19.018 -07 000000433 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:03:19.068 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 18:03:19.068 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:03:19.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:19.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:19.068 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:19.068 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:19.068 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:03:19.068 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:19.068 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:03:19.068 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:03:19.078 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:03:19.078 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:03:19.088 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:03:19.088 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 18:03:19.088 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:03:19.138 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:03:19.338 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:03:19.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:03:19.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:03:19.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:03:19.378 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:03:19.378 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 18:03:19.378 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 18:03:19.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:03:19.468 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:19.468 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:03:19.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:03:19.478 -07 000000626 INF: Autofocus start
17-03-17 18:03:19.478 -07 000000626 INF: MeasureProfile start
17-03-17 18:03:19.478 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:03:19.478 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:19.488 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:03:19.488 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:03:19.488 -07 000000626 INF: MeasureProfile done
17-03-17 18:03:19.488 -07 000000626 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:03:19.488 -07 000000626 INF: Autofocus finished
17-03-17 18:03:19.688 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:03:19.688 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 18:03:19.688 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5400390625, Z-position -0.137765087976016. ----------
17-03-17 18:03:19.688 -07 000000610 INF: Cycle	8	Tile	9	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:03:19.688 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28618, sync = True, waitForSettling = True)
17-03-17 18:03:19.698 -07 000000610 INF: Z Motor: Moving to -0.131005 mm, started at -0.137765 mm, distance = 6.76 um
17-03-17 18:03:19.698 -07 000000610 INF: FPGA: Xmit ZDACW 28618\n [Z Motor]
17-03-17 18:03:19.698 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 18:03:19.708 -07 000000610 INF: FPGA: 'ZDACW 28618' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:03:19.708 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:19.708 -07 000000486 INF: FPGA: Recv ZDACR 28618
17-03-17 18:03:19.718 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:19.718 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:03:19.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:19.868 -07 000000486 INF: FPGA: Recv ZSGSRD 29682
17-03-17 18:03:19.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:19.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:19.878 -07 000000486 INF: FPGA: Recv ZSGSRD 29682
17-03-17 18:03:19.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:19.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:19.888 -07 000000486 INF: FPGA: Recv ZSGSRD 29684
17-03-17 18:03:19.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:19.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:19.898 -07 000000486 INF: FPGA: Recv ZSGSRD 29680
17-03-17 18:03:19.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:19.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:19.908 -07 000000626 INF: FPGA: Recv ZSGSRD 29684
17-03-17 18:03:19.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:19.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:19.918 -07 000000561 INF: FPGA: Recv ZSGSRD 29678
17-03-17 18:03:19.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:19.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:19.928 -07 000000486 INF: FPGA: Recv ZSGSRD 29680
17-03-17 18:03:19.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:19.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:19.938 -07 000000486 INF: FPGA: Recv ZSGSRD 29683
17-03-17 18:03:19.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:19.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:19.958 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 4.030322,
17-03-17 18:03:19.958 -07 000000409 INF: FPGA: Recv ZSGSRD 29684
17-03-17 18:03:19.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:03:19.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:19.968 -07 000000433 INF: FPGA: Recv ZSGSRD 29683
17-03-17 18:03:19.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:19.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:19.988 -07 000000482 INF: FPGA: Recv ZPIEZORD 25186
17-03-17 18:03:19.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:03:19.998 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.367 V. Piezo Error = -9.9 V.
17-03-17 18:03:19.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29682 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29682 (-130.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29678 (-130.2 uncal um), Max = 29684 (-130.2 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:03:19.998 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29682, posNoise = 2, negNoise = 4
17-03-17 18:03:19.998 -07 000000610 INF: Z Motor: After move to -0.131005, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:19.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 301 ms)
17-03-17 18:03:19.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:19.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:19.998 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:19.998 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:19.998 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:03:19.998 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:03:19.998 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:03:19.998 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:03:19.998 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:03:19.998 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:19.998 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:03:19.998 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:03:20.008 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:03:20.008 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:03:20.008 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:03:20.008 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:03:20.018 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 18:03:20.018 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:03:20.018 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 18:03:20.018 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:03:20.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28795 150\n [Camera]
17-03-17 18:03:20.228 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:03:20.618 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:03:20.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:03:20.618 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:20.618 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:20.618 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2181237920, 0x0, 391868352) start.
17-03-17 18:03:20.618 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:03:20.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:03:20.618 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:20.618 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:20.618 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) start.
17-03-17 18:03:20.808 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28795 776
17-03-17 18:03:20.958 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:03:21.018 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2181237920, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 18:03:21.018 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:03:21.018 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:21.018 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 18:03:21.018 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:03:21.018 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:21.028 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:03:21.028 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 18:03:21.028 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:03:21.028 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:03:21.148 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:03:21.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:03:21.148 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:21.148 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:21.148 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 18:03:21.148 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:03:21.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:03:21.148 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:21.148 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:21.148 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 18:03:21.338 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:03:21.338 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:03:21.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28795 150' command took 2 ms to send, 1304 ms to get response, and 1317 ms overall
17-03-17 18:03:21.338 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:03:21.338 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5400390625, Z-Position -0.131006816802884. ------
17-03-17 18:03:21.338 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:03:21.338 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13778 mm
17-03-17 18:03:21.338 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:03:21.348 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:21.348 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:03:21.348 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 18:03:21.348 -07 000000623 INF: Y Motor: Moving to 67.3826 mm, started at 66.5400 mm, delta = 0.8426 mm
17-03-17 18:03:21.348 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:03:21.348 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 30098, sync = True, waitForSettling = False)
17-03-17 18:03:21.348 -07 000000576 INF: Z Motor: Moving to -0.137780 mm, started at -0.131007 mm, distance = -6.77 um
17-03-17 18:03:21.358 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:21.358 -07 000000593 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:03:21.368 -07 000000576 INF: FPGA: Xmit ZDACW 30098\n [Z Motor]
17-03-17 18:03:21.368 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:03:21.368 -07 000000623 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:21.368 -07 000000623 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:03:21.368 -07 000000623 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:03:21.368 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 18:03:21.378 -07 000000576 INF: FPGA: 'ZDACW 30098' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:03:21.378 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:21.378 -07 000000593 INF: FPGA: Recv ZDACR 30098
17-03-17 18:03:21.388 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:03:21.388 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:21.388 -07 000000576 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 18:03:21.538 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 18:03:21.538 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:03:21.538 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:21.538 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:03:21.548 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 18:03:21.548 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:03:21.548 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:21.548 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:03:21.548 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:03:21.548 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 198 ms to get response, and 205 ms overall
17-03-17 18:03:21.558 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:03:21.558 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 18:03:21.558 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:03:21.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:03:21.758 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 18:03:21.758 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:03:21.798 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:21.798 -07 000000626 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:03:21.808 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:03:21.808 -07 000000623 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:21.808 -07 000000623 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 18:03:21.808 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.122 mm/sec
17-03-17 18:03:22.758 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:22.758 -07 000000593 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:03:22.768 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:22.768 -07 000000623 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:22.778 -07 000000623 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:03:22.778 -07 000000623 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:03:22.778 -07 000000623 INF: Y Motor: Moved to 67.3726 after 1436 ms (table move)
17-03-17 18:03:22.788 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137780 mm (DAC = 30098)
17-03-17 18:03:22.788 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:22.788 -07 000000626 INF: FPGA: Recv ZSGSRD 30743
17-03-17 18:03:22.798 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:03:22.798 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:22.798 -07 000000482 INF: FPGA: Recv ZSGSRD 30736
17-03-17 18:03:22.808 -07 000000476 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:22.808 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:22.808 -07 000000626 INF: FPGA: Recv ZSGSRD 30734
17-03-17 18:03:22.818 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:22.818 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:22.818 -07 000000482 INF: FPGA: Recv ZSGSRD 30741
17-03-17 18:03:22.828 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:22.828 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:22.828 -07 000000561 INF: FPGA: Recv ZSGSRD 30736
17-03-17 18:03:22.838 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:22.838 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:22.838 -07 000000482 INF: FPGA: Recv ZSGSRD 30737
17-03-17 18:03:22.848 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:22.848 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:22.848 -07 000000561 INF: FPGA: Recv ZSGSRD 30741
17-03-17 18:03:22.858 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:22.858 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:22.858 -07 000000482 INF: FPGA: Recv ZSGSRD 30733
17-03-17 18:03:22.868 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:22.868 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:22.868 -07 000000561 INF: FPGA: Recv ZSGSRD 30736
17-03-17 18:03:22.878 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:22.878 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:22.878 -07 000000626 INF: FPGA: Recv ZSGSRD 30736
17-03-17 18:03:22.888 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:22.888 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:22.888 -07 000000623 INF: FPGA: Recv ZPIEZORD 26615
17-03-17 18:03:22.898 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:22.898 -07 000000476 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.593 V. Piezo Error = -9.1 V.
17-03-17 18:03:22.898 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30737 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30736 (-137.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30733 (-137.0 uncal um), Max = 30743 (-137.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:03:22.898 -07 000000476 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30737, posNoise = 6, negNoise = 4
17-03-17 18:03:22.898 -07 000000476 INF: Z Motor: After move to -0.137780, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:22.898 -07 000000476 INF: Z Motor: Settle wait time = 1436 ms, measure time = 108 ms (allowed 150 ms), total time = 1544 ms
17-03-17 18:03:22.898 -07 000000476 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:03:22.948 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 18:03:22.948 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:03:22.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:22.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:22.948 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:22.948 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:22.948 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:03:22.948 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:22.948 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:03:22.948 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:03:22.958 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:03:22.958 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:03:22.968 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:03:22.968 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:03:22.968 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:03:23.018 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:03:23.208 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:03:23.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:03:23.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:03:23.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) start.
17-03-17 18:03:23.248 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:03:23.248 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 18:03:23.248 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 18:03:23.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:03:23.338 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:23.338 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:03:23.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:03:23.448 -07 000000593 INF: Autofocus start
17-03-17 18:03:23.448 -07 000000593 INF: MeasureProfile start
17-03-17 18:03:23.448 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:03:23.448 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:23.458 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:03:23.458 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:03:23.458 -07 000000593 INF: MeasureProfile done
17-03-17 18:03:23.458 -07 000000593 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:03:23.458 -07 000000593 INF: Autofocus finished
17-03-17 18:03:23.658 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:03:23.658 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:03:23.658 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.137784360612442. ----------
17-03-17 18:03:23.658 -07 000000610 INF: Cycle	8	Tile	10	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:03:23.668 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28605, sync = True, waitForSettling = True)
17-03-17 18:03:23.668 -07 000000610 INF: Z Motor: Moving to -0.130945 mm, started at -0.137784 mm, distance = 6.84 um
17-03-17 18:03:23.668 -07 000000610 INF: FPGA: Xmit ZDACW 28605\n [Z Motor]
17-03-17 18:03:23.668 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 18:03:23.678 -07 000000610 INF: FPGA: 'ZDACW 28605' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:03:23.678 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:23.678 -07 000000561 INF: FPGA: Recv ZDACR 28605
17-03-17 18:03:23.688 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:23.688 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:03:23.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:23.838 -07 000000476 INF: FPGA: Recv ZSGSRD 29678
17-03-17 18:03:23.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:23.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:23.848 -07 000000623 INF: FPGA: Recv ZSGSRD 29675
17-03-17 18:03:23.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:23.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:23.858 -07 000000576 INF: FPGA: Recv ZSGSRD 29673
17-03-17 18:03:23.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:23.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:23.868 -07 000000623 INF: FPGA: Recv ZSGSRD 29673
17-03-17 18:03:23.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:23.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:23.878 -07 000000482 INF: FPGA: Recv ZSGSRD 29668
17-03-17 18:03:23.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:23.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:23.888 -07 000000561 INF: FPGA: Recv ZSGSRD 29675
17-03-17 18:03:23.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:23.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:23.898 -07 000000593 INF: FPGA: Recv ZSGSRD 29673
17-03-17 18:03:23.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:23.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:23.908 -07 000000541 INF: FPGA: Recv ZSGSRD 29674
17-03-17 18:03:23.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:23.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:23.918 -07 000000476 INF: FPGA: Recv ZSGSRD 29675
17-03-17 18:03:23.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:23.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:23.928 -07 000000626 INF: FPGA: Recv ZSGSRD 29672
17-03-17 18:03:23.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:23.938 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:23.938 -07 000000576 INF: FPGA: Recv ZPIEZORD 25208
17-03-17 18:03:23.948 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:23.948 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.365 V. Piezo Error = -9.8 V.
17-03-17 18:03:23.948 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29674 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29674 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29668 (-130.1 uncal um), Max = 29678 (-130.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:03:23.948 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29674, posNoise = 4, negNoise = 6
17-03-17 18:03:23.948 -07 000000610 INF: Z Motor: After move to -0.130945, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:23.948 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:03:23.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:23.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:23.948 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:23.948 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:03:23.948 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:03:23.948 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:23.948 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:03:23.948 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:23.948 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 18:03:23.948 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:03:23.948 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:03:23.948 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:03:23.958 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:03:23.958 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:03:23.958 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:03:23.958 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:03:23.968 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:03:23.968 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:03:23.968 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:03:23.968 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 18:03:23.968 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28782 150\n [Camera]
17-03-17 18:03:24.168 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:03:24.568 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:03:24.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:03:24.568 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:24.568 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:24.568 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1053888560, 0x0, 391868352) start.
17-03-17 18:03:24.568 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:03:24.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:03:24.568 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:24.568 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:24.568 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1089310824, 0x0, 418435064) start.
17-03-17 18:03:24.758 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28782 776
17-03-17 18:03:24.908 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:03:24.968 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1053888560, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:03:24.968 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:03:24.968 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:24.968 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1089310824, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 18:03:24.968 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:03:24.968 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:24.968 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:03:24.968 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:03:24.968 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:03:24.978 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:03:25.098 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:03:25.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:03:25.098 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:25.208 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:03:25.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:03:25.208 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:25.208 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:25.208 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1124733088, 0x0, 391868352) start.
17-03-17 18:03:25.218 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:25.218 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2181237920, 0x0, 418435064) start.
17-03-17 18:03:25.288 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:03:25.288 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:03:25.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28782 150' command took 2 ms to send, 1303 ms to get response, and 1314 ms overall
17-03-17 18:03:25.288 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:03:25.288 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.13095542310575. ------
17-03-17 18:03:25.288 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:03:25.288 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13693 mm
17-03-17 18:03:25.288 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:03:25.298 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:25.298 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:03:25.298 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 18:03:25.298 -07 000000593 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 18:03:25.298 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:03:25.298 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 29911, sync = True, waitForSettling = False)
17-03-17 18:03:25.298 -07 000000475 INF: Z Motor: Moving to -0.136924 mm, started at -0.130955 mm, distance = -5.97 um
17-03-17 18:03:25.308 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:25.308 -07 000000623 INF: FPGA: Recv YRDPOS 137980
17-03-17 18:03:25.318 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:03:25.318 -07 000000475 INF: FPGA: Xmit ZDACW 29911\n [Z Motor]
17-03-17 18:03:25.318 -07 000000593 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:25.318 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 18:03:25.318 -07 000000593 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:03:25.318 -07 000000593 INF: Y Motor: Moving 1343 steps-21
17-03-17 18:03:25.328 -07 000000475 INF: FPGA: 'ZDACW 29911' command took 3 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:03:25.328 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:03:25.338 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:25.338 -07 000000561 INF: FPGA: Recv ZDACR 29911
17-03-17 18:03:25.348 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:03:25.348 -07 000000475 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 18:03:25.358 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 4.031682,
17-03-17 18:03:25.498 -07 000000409 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:03:25.498 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 205 ms overall
17-03-17 18:03:25.588 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1124733088, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 18:03:25.588 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 18:03:25.588 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:25.598 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2181237920, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 18:03:25.598 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:03:25.598 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:25.598 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:03:25.598 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 501 ms.
17-03-17 18:03:25.598 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:03:25.608 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:03:25.698 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 18:03:25.698 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-17 18:03:25.738 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:25.738 -07 000000576 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:03:25.748 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:03:25.748 -07 000000593 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:25.748 -07 000000593 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:03:25.748 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.840 mm, average velocity = 2.205 mm/sec
17-03-17 18:03:26.558 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:03:26.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:03:26.698 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:26.698 -07 000000623 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:03:26.708 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:26.708 -07 000000593 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:26.718 -07 000000593 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:03:26.718 -07 000000593 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:03:26.718 -07 000000593 INF: Y Motor: Moved to 68.2056 after 1425 ms (table move)
17-03-17 18:03:26.728 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136924 mm (DAC = 29911)
17-03-17 18:03:26.728 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:26.728 -07 000000482 INF: FPGA: Recv ZSGSRD 30607
17-03-17 18:03:26.738 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:03:26.738 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:26.738 -07 000000623 INF: FPGA: Recv ZSGSRD 30603
17-03-17 18:03:26.748 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:26.748 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:26.748 -07 000000482 INF: FPGA: Recv ZSGSRD 30603
17-03-17 18:03:26.758 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:26.758 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:26.758 -07 000000623 INF: FPGA: Recv ZSGSRD 30607
17-03-17 18:03:26.768 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:26.768 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:26.768 -07 000000541 INF: FPGA: Recv ZSGSRD 30611
17-03-17 18:03:26.778 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:26.778 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:26.778 -07 000000409 INF: FPGA: Recv ZSGSRD 30603
17-03-17 18:03:26.788 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:26.788 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:26.788 -07 000000482 INF: FPGA: Recv ZSGSRD 30601
17-03-17 18:03:26.798 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:26.798 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:26.798 -07 000000541 INF: FPGA: Recv ZSGSRD 30600
17-03-17 18:03:26.808 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:26.808 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:26.808 -07 000000482 INF: FPGA: Recv ZSGSRD 30604
17-03-17 18:03:26.818 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:26.818 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:26.818 -07 000000626 INF: FPGA: Recv ZSGSRD 30599
17-03-17 18:03:26.828 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:26.828 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:26.828 -07 000000623 INF: FPGA: Recv ZPIEZORD 26449
17-03-17 18:03:26.838 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:26.838 -07 000000551 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.564 V. Piezo Error = -9.1 V.
17-03-17 18:03:26.838 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30604 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30603 (-136.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30599 (-136.1 uncal um), Max = 30611 (-136.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:03:26.838 -07 000000551 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30604, posNoise = 7, negNoise = 5
17-03-17 18:03:26.838 -07 000000551 INF: Z Motor: After move to -0.136924, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:26.838 -07 000000551 INF: Z Motor: Settle wait time = 1429 ms, measure time = 107 ms (allowed 150 ms), total time = 1536 ms
17-03-17 18:03:26.838 -07 000000551 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:03:26.888 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 18:03:26.888 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:03:26.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:26.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:26.888 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:26.888 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:26.888 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:03:26.888 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:26.898 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:03:26.898 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:03:26.898 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:03:26.898 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:03:26.908 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:03:26.908 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:03:26.908 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:03:26.958 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:03:27.158 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:03:27.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:03:27.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:03:27.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2216660184, 0x0, 559484976) start.
17-03-17 18:03:27.198 -07 000000409 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:03:27.198 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 18:03:27.198 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 288 ms overall
17-03-17 18:03:27.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2216660184, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:03:27.288 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:27.288 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:03:27.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:03:27.298 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:03:27.298 -07 000000409 INF: Autofocus start
17-03-17 18:03:27.298 -07 000000409 INF: MeasureProfile start
17-03-17 18:03:27.298 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:27.308 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:03:27.308 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:03:27.308 -07 000000409 INF: MeasureProfile done
17-03-17 18:03:27.308 -07 000000409 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:03:27.308 -07 000000409 INF: Autofocus finished
17-03-17 18:03:27.508 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:03:27.508 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:03:27.508 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.136929940397587. ----------
17-03-17 18:03:27.508 -07 000000610 INF: Cycle	8	Tile	11	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:03:27.518 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28436, sync = True, waitForSettling = True)
17-03-17 18:03:27.518 -07 000000610 INF: Z Motor: Moving to -0.130172 mm, started at -0.136930 mm, distance = 6.76 um
17-03-17 18:03:27.518 -07 000000610 INF: FPGA: Xmit ZDACW 28436\n [Z Motor]
17-03-17 18:03:27.518 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 18:03:27.528 -07 000000610 INF: FPGA: 'ZDACW 28436' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:03:27.528 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:27.528 -07 000000593 INF: FPGA: Recv ZDACR 28436
17-03-17 18:03:27.538 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:27.538 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:03:27.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:27.688 -07 000000482 INF: FPGA: Recv ZSGSRD 29556
17-03-17 18:03:27.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:27.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:27.698 -07 000000541 INF: FPGA: Recv ZSGSRD 29553
17-03-17 18:03:27.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:27.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:27.708 -07 000000626 INF: FPGA: Recv ZSGSRD 29555
17-03-17 18:03:27.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:27.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:27.718 -07 000000551 INF: FPGA: Recv ZSGSRD 29550
17-03-17 18:03:27.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:27.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:27.728 -07 000000409 INF: FPGA: Recv ZSGSRD 29549
17-03-17 18:03:27.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:27.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:27.738 -07 000000551 INF: FPGA: Recv ZSGSRD 29555
17-03-17 18:03:27.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:27.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:27.748 -07 000000623 INF: FPGA: Recv ZSGSRD 29547
17-03-17 18:03:27.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:27.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:27.758 -07 000000541 INF: FPGA: Recv ZSGSRD 29556
17-03-17 18:03:27.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:27.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:27.768 -07 000000482 INF: FPGA: Recv ZSGSRD 29549
17-03-17 18:03:27.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:27.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:27.778 -07 000000593 INF: FPGA: Recv ZSGSRD 29554
17-03-17 18:03:27.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:27.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:27.788 -07 000000623 INF: FPGA: Recv ZPIEZORD 25046
17-03-17 18:03:27.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:27.798 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.339 V. Piezo Error = -9.9 V.
17-03-17 18:03:27.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29552 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29554 (-129.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29547 (-129.4 uncal um), Max = 29556 (-129.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:03:27.798 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29552, posNoise = 4, negNoise = 5
17-03-17 18:03:27.798 -07 000000610 INF: Z Motor: After move to -0.130172, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:27.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:03:27.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:27.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:27.798 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:27.798 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:27.798 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:03:27.798 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:03:27.798 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:03:27.798 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:27.798 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:03:27.798 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:03:27.798 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:03:27.798 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:03:27.808 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:03:27.808 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:03:27.808 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:03:27.808 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:03:27.818 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:03:27.818 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:03:27.818 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:03:27.818 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:03:27.828 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28612 150\n [Camera]
17-03-17 18:03:28.028 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:03:28.418 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:03:28.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:03:28.418 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:28.418 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:03:28.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:03:28.418 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:28.438 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:28.438 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1053888560, 0x0, 391868352) start.
17-03-17 18:03:28.438 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:28.438 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1089310824, 0x0, 418435064) start.
17-03-17 18:03:28.608 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28612 776
17-03-17 18:03:28.758 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:03:28.808 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1089310824, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:03:28.808 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:03:28.918 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:28.918 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1053888560, 0x0, 391868352) end. Duration was 485 ms.
17-03-17 18:03:28.918 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 486 ms.
17-03-17 18:03:28.918 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:28.928 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:03:28.928 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:03:28.928 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 507 ms.
17-03-17 18:03:28.928 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 510 ms.
17-03-17 18:03:28.948 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:03:28.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:03:28.948 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:28.948 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:03:28.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:03:28.948 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:28.948 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:28.948 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:03:28.948 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:28.948 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2181237920, 0x0, 391868352) start.
17-03-17 18:03:29.138 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:03:29.138 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:03:29.138 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28612 150' command took 2 ms to send, 1304 ms to get response, and 1314 ms overall
17-03-17 18:03:29.138 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:03:29.138 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.130171669224455. ------
17-03-17 18:03:29.138 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:03:29.138 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13680 mm
17-03-17 18:03:29.138 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:03:29.148 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:29.148 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 18:03:29.148 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:03:29.148 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 18:03:29.148 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 29883, sync = True, waitForSettling = False)
17-03-17 18:03:29.148 -07 000000541 INF: Z Motor: Moving to -0.136796 mm, started at -0.130172 mm, distance = -6.62 um
17-03-17 18:03:29.148 -07 000000486 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 18:03:29.158 -07 000000541 INF: FPGA: Xmit ZDACW 29883\n [Z Motor]
17-03-17 18:03:29.158 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 18:03:29.168 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:29.168 -07 000000541 INF: FPGA: 'ZDACW 29883' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:03:29.168 -07 000000409 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:03:29.178 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:03:29.178 -07 000000486 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:29.178 -07 000000486 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:03:29.178 -07 000000486 INF: Y Motor: Moving 1339 steps-14
17-03-17 18:03:29.178 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:29.178 -07 000000480 INF: FPGA: Recv ZDACR 29883
17-03-17 18:03:29.188 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:03:29.188 -07 000000541 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 18:03:29.188 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:03:29.348 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2181237920, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:03:29.348 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:03:29.348 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:29.348 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:03:29.348 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 203 ms overall
17-03-17 18:03:29.348 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 18:03:29.348 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:03:29.348 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:29.348 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:03:29.348 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:03:29.358 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:03:29.358 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:03:29.558 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 18:03:29.558 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 18:03:29.598 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:29.598 -07 000000458 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:03:29.608 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:29.608 -07 000000486 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:29.608 -07 000000486 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 18:03:29.608 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.837 mm, average velocity = 2.157 mm/sec
17-03-17 18:03:30.558 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:30.558 -07 000000458 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:03:30.568 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:30.568 -07 000000486 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:30.578 -07 000000486 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:03:30.578 -07 000000486 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:03:30.578 -07 000000486 INF: Y Motor: Moved to 69.0278 after 1435 ms (table move)
17-03-17 18:03:30.588 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136796 mm (DAC = 29883)
17-03-17 18:03:30.588 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:30.588 -07 000000541 INF: FPGA: Recv ZSGSRD 30582
17-03-17 18:03:30.598 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:03:30.598 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:30.598 -07 000000623 INF: FPGA: Recv ZSGSRD 30579
17-03-17 18:03:30.608 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:30.608 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:30.608 -07 000000409 INF: FPGA: Recv ZSGSRD 30590
17-03-17 18:03:30.618 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:30.618 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:30.618 -07 000000476 INF: FPGA: Recv ZSGSRD 30580
17-03-17 18:03:30.628 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:30.628 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:30.628 -07 000000482 INF: FPGA: Recv ZSGSRD 30581
17-03-17 18:03:30.638 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:30.638 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:30.638 -07 000000486 INF: FPGA: Recv ZSGSRD 30583
17-03-17 18:03:30.648 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:30.648 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:30.648 -07 000000476 INF: FPGA: Recv ZSGSRD 30587
17-03-17 18:03:30.658 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:30.658 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:30.658 -07 000000458 INF: FPGA: Recv ZSGSRD 30587
17-03-17 18:03:30.668 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:30.668 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:30.668 -07 000000476 INF: FPGA: Recv ZSGSRD 30580
17-03-17 18:03:30.678 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:30.678 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:30.678 -07 000000433 INF: FPGA: Recv ZSGSRD 30582
17-03-17 18:03:30.688 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:30.688 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:30.688 -07 000000458 INF: FPGA: Recv ZPIEZORD 26454
17-03-17 18:03:30.698 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:30.698 -07 000000475 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.560 V. Piezo Error = -9.1 V.
17-03-17 18:03:30.698 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30583 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30582 (-136.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30579 (-136.0 uncal um), Max = 30590 (-136.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:03:30.698 -07 000000475 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30583, posNoise = 7, negNoise = 4
17-03-17 18:03:30.698 -07 000000475 INF: Z Motor: After move to -0.136796, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:30.698 -07 000000475 INF: Z Motor: Settle wait time = 1439 ms, measure time = 106 ms (allowed 150 ms), total time = 1545 ms
17-03-17 18:03:30.698 -07 000000475 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:03:30.718 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 4.015368,
17-03-17 18:03:30.748 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 18:03:30.748 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:03:30.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:30.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:30.748 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:30.748 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:30.748 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:03:30.748 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:30.748 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:03:30.748 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:03:30.758 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:03:30.758 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:03:30.768 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:03:30.768 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 18:03:30.768 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:03:30.808 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:03:31.008 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:03:31.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:03:31.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:03:31.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:03:31.048 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:03:31.048 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 18:03:31.048 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 18:03:31.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:03:31.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:31.138 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:03:31.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:03:31.248 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:03:31.248 -07 000000480 INF: Autofocus start
17-03-17 18:03:31.248 -07 000000480 INF: MeasureProfile start
17-03-17 18:03:31.248 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:31.258 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:03:31.258 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:03:31.258 -07 000000480 INF: MeasureProfile done
17-03-17 18:03:31.258 -07 000000480 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:03:31.258 -07 000000480 INF: Autofocus finished
17-03-17 18:03:31.458 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:03:31.458 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:03:31.458 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.13679503194261. ----------
17-03-17 18:03:31.458 -07 000000610 INF: Cycle	8	Tile	12	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:03:31.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28391, sync = True, waitForSettling = True)
17-03-17 18:03:31.468 -07 000000610 INF: Z Motor: Moving to -0.129966 mm, started at -0.136795 mm, distance = 6.83 um
17-03-17 18:03:31.468 -07 000000610 INF: FPGA: Xmit ZDACW 28391\n [Z Motor]
17-03-17 18:03:31.468 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 18:03:31.478 -07 000000610 INF: FPGA: 'ZDACW 28391' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:03:31.478 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:31.478 -07 000000482 INF: FPGA: Recv ZDACR 28391
17-03-17 18:03:31.488 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:31.488 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:03:31.558 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:03:31.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:03:31.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:31.638 -07 000000459 INF: FPGA: Recv ZSGSRD 29522
17-03-17 18:03:31.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:31.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:31.648 -07 000000476 INF: FPGA: Recv ZSGSRD 29525
17-03-17 18:03:31.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:31.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:31.658 -07 000000480 INF: FPGA: Recv ZSGSRD 29519
17-03-17 18:03:31.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:31.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:31.668 -07 000000459 INF: FPGA: Recv ZSGSRD 29515
17-03-17 18:03:31.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:31.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:31.678 -07 000000593 INF: FPGA: Recv ZSGSRD 29521
17-03-17 18:03:31.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:31.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:31.688 -07 000000476 INF: FPGA: Recv ZSGSRD 29522
17-03-17 18:03:31.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:31.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:31.698 -07 000000409 INF: FPGA: Recv ZSGSRD 29523
17-03-17 18:03:31.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:31.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:31.708 -07 000000459 INF: FPGA: Recv ZSGSRD 29521
17-03-17 18:03:31.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:31.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:31.718 -07 000000593 INF: FPGA: Recv ZSGSRD 29522
17-03-17 18:03:31.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:31.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:31.728 -07 000000541 INF: FPGA: Recv ZSGSRD 29521
17-03-17 18:03:31.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:31.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:31.738 -07 000000486 INF: FPGA: Recv ZPIEZORD 25057
17-03-17 18:03:31.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:31.748 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.332 V. Piezo Error = -9.8 V.
17-03-17 18:03:31.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29521 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29522 (-129.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29515 (-129.2 uncal um), Max = 29525 (-129.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:03:31.748 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29521, posNoise = 4, negNoise = 6
17-03-17 18:03:31.748 -07 000000610 INF: Z Motor: After move to -0.129966, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:31.748 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:03:31.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:31.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:31.748 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:31.748 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:31.748 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:03:31.748 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:31.748 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:03:31.748 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:03:31.748 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:03:31.748 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:03:31.748 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:03:31.748 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:03:31.758 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:03:31.758 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:03:31.758 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:03:31.758 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:03:31.768 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:03:31.768 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:03:31.768 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:03:31.768 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:03:31.768 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28568 150\n [Camera]
17-03-17 18:03:31.968 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:03:32.368 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:03:32.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:03:32.368 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:03:32.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:03:32.368 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:32.368 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:32.368 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2231336264, 0x0, 418435064) start.
17-03-17 18:03:32.368 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:32.368 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:32.368 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1124733088, 0x0, 391868352) start.
17-03-17 18:03:32.558 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28568 776
17-03-17 18:03:32.708 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:03:32.758 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2231336264, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 18:03:32.758 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:03:32.758 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:32.758 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:03:32.768 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1124733088, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:03:32.768 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:03:32.768 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:32.768 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:03:32.768 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:03:32.768 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:03:32.898 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:03:32.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:03:32.908 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:03:32.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:03:32.918 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:32.918 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:32.918 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:32.918 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:03:32.918 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:32.918 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:03:33.088 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:03:33.088 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:03:33.088 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28568 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-17 18:03:33.088 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:03:33.088 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.12997251864806. ------
17-03-17 18:03:33.088 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:03:33.088 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13646 mm
17-03-17 18:03:33.088 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:03:33.098 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:33.098 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:03:33.098 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:03:33.098 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 18:03:33.098 -07 000000476 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 18:03:33.098 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 29810, sync = True, waitForSettling = False)
17-03-17 18:03:33.098 -07 000000551 INF: Z Motor: Moving to -0.136461 mm, started at -0.129973 mm, distance = -6.49 um
17-03-17 18:03:33.108 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:33.108 -07 000000433 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:03:33.118 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:03:33.118 -07 000000476 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:33.118 -07 000000476 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:03:33.118 -07 000000476 INF: Y Motor: Moving 1352 steps-30
17-03-17 18:03:33.118 -07 000000551 INF: FPGA: Xmit ZDACW 29810\n [Z Motor]
17-03-17 18:03:33.118 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 18:03:33.128 -07 000000551 INF: FPGA: 'ZDACW 29810' command took 1 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:03:33.128 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:33.128 -07 000000459 INF: FPGA: Recv ZDACR 29810
17-03-17 18:03:33.138 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:03:33.138 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:33.138 -07 000000551 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 18:03:33.298 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:03:33.298 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 18:03:33.298 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:03:33.298 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:03:33.298 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:33.298 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 18:03:33.298 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:03:33.298 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:33.308 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:03:33.308 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:03:33.308 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:03:33.308 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:03:33.508 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 18:03:33.508 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:03:33.538 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:33.548 -07 000000623 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:03:33.548 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:03:33.548 -07 000000476 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:33.548 -07 000000476 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 18:03:33.548 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-17 18:03:34.498 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:34.498 -07 000000541 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:03:34.508 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:34.508 -07 000000476 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:34.518 -07 000000476 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:03:34.518 -07 000000476 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:03:34.528 -07 000000476 INF: Y Motor: Moved to 69.8638 after 1425 ms (table move)
17-03-17 18:03:34.528 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136461 mm (DAC = 29810)
17-03-17 18:03:34.528 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:34.528 -07 000000409 INF: FPGA: Recv ZSGSRD 30529
17-03-17 18:03:34.538 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:03:34.538 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:34.538 -07 000000541 INF: FPGA: Recv ZSGSRD 30526
17-03-17 18:03:34.548 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:34.548 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:34.548 -07 000000458 INF: FPGA: Recv ZSGSRD 30529
17-03-17 18:03:34.558 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:34.558 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:34.558 -07 000000551 INF: FPGA: Recv ZSGSRD 30533
17-03-17 18:03:34.568 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:34.568 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:34.568 -07 000000433 INF: FPGA: Recv ZSGSRD 30535
17-03-17 18:03:34.578 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:34.578 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:34.578 -07 000000623 INF: FPGA: Recv ZSGSRD 30535
17-03-17 18:03:34.588 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:34.588 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:34.588 -07 000000458 INF: FPGA: Recv ZSGSRD 30539
17-03-17 18:03:34.598 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:34.598 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:34.598 -07 000000551 INF: FPGA: Recv ZSGSRD 30527
17-03-17 18:03:34.608 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:34.608 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:34.608 -07 000000627 INF: FPGA: Recv ZSGSRD 30530
17-03-17 18:03:34.618 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:34.618 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:34.618 -07 000000626 INF: FPGA: Recv ZSGSRD 30532
17-03-17 18:03:34.628 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:34.628 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:34.628 -07 000000561 INF: FPGA: Recv ZPIEZORD 26428
17-03-17 18:03:34.638 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:34.638 -07 000000482 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.549 V. Piezo Error = -9.0 V.
17-03-17 18:03:34.638 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30532 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30531 (-135.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30526 (-135.6 uncal um), Max = 30539 (-135.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:03:34.638 -07 000000482 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30532, posNoise = 7, negNoise = 6
17-03-17 18:03:34.638 -07 000000482 INF: Z Motor: After move to -0.136461, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:34.638 -07 000000482 INF: Z Motor: Settle wait time = 1429 ms, measure time = 106 ms (allowed 150 ms), total time = 1535 ms
17-03-17 18:03:34.638 -07 000000482 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:03:34.688 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 18:03:34.688 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:03:34.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:34.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:34.688 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:34.688 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:34.688 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:03:34.688 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:34.698 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:03:34.698 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:03:34.698 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:03:34.698 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:03:34.708 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:03:34.708 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 18:03:34.708 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:03:34.758 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:03:34.958 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:03:34.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:03:34.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:03:34.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2266758528, 0x0, 559484976) start.
17-03-17 18:03:34.988 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:03:34.998 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 18:03:34.998 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:03:35.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2266758528, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 18:03:35.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:35.088 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:03:35.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:03:35.098 -07 000000475 INF: Autofocus start
17-03-17 18:03:35.098 -07 000000475 INF: MeasureProfile start
17-03-17 18:03:35.098 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:03:35.108 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:35.108 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:03:35.108 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:03:35.108 -07 000000475 INF: MeasureProfile done
17-03-17 18:03:35.108 -07 000000475 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:03:35.108 -07 000000475 INF: Autofocus finished
17-03-17 18:03:35.308 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:03:35.308 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 18:03:35.318 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.136467397123381. ----------
17-03-17 18:03:35.318 -07 000000610 INF: Cycle	8	Tile	13	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:03:35.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28305, sync = True, waitForSettling = True)
17-03-17 18:03:35.318 -07 000000610 INF: Z Motor: Moving to -0.129572 mm, started at -0.136467 mm, distance = 6.90 um
17-03-17 18:03:35.318 -07 000000610 INF: FPGA: Xmit ZDACW 28305\n [Z Motor]
17-03-17 18:03:35.318 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 18:03:35.328 -07 000000610 INF: FPGA: 'ZDACW 28305' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:03:35.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:35.328 -07 000000458 INF: FPGA: Recv ZDACR 28305
17-03-17 18:03:35.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:35.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:03:35.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:35.488 -07 000000459 INF: FPGA: Recv ZSGSRD 29460
17-03-17 18:03:35.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:35.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:35.498 -07 000000475 INF: FPGA: Recv ZSGSRD 29463
17-03-17 18:03:35.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:35.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:35.508 -07 000000627 INF: FPGA: Recv ZSGSRD 29460
17-03-17 18:03:35.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:35.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:35.518 -07 000000626 INF: FPGA: Recv ZSGSRD 29449
17-03-17 18:03:35.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:35.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:35.528 -07 000000482 INF: FPGA: Recv ZSGSRD 29456
17-03-17 18:03:35.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:35.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:35.538 -07 000000576 INF: FPGA: Recv ZSGSRD 29462
17-03-17 18:03:35.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:35.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:35.548 -07 000000623 INF: FPGA: Recv ZSGSRD 29459
17-03-17 18:03:35.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:35.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:35.558 -07 000000462 INF: FPGA: Recv ZSGSRD 29456
17-03-17 18:03:35.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:35.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:35.568 -07 000000626 INF: FPGA: Recv ZSGSRD 29458
17-03-17 18:03:35.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:35.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:35.578 -07 000000409 INF: FPGA: Recv ZSGSRD 29458
17-03-17 18:03:35.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:35.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:35.588 -07 000000561 INF: FPGA: Recv ZPIEZORD 24987
17-03-17 18:03:35.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:35.598 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.319 V. Piezo Error = -9.8 V.
17-03-17 18:03:35.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29458 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29458 (-128.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29449 (-128.7 uncal um), Max = 29463 (-128.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:03:35.598 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29458, posNoise = 5, negNoise = 9
17-03-17 18:03:35.598 -07 000000610 INF: Z Motor: After move to -0.129572, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:35.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:03:35.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:35.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:35.598 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:35.598 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:03:35.598 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:35.598 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:35.598 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:03:35.598 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:03:35.598 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:03:35.598 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:03:35.598 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:03:35.598 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:03:35.608 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:03:35.608 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:03:35.608 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:03:35.608 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:03:35.618 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:03:35.618 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:03:35.618 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:03:35.618 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:03:35.628 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28482 150\n [Camera]
17-03-17 18:03:35.818 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:03:36.078 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 3.986717,
17-03-17 18:03:36.218 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:03:36.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:03:36.218 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:36.218 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:36.218 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:03:36.218 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:03:36.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:03:36.218 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:36.218 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:36.218 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:03:36.408 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28482 776
17-03-17 18:03:36.558 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:03:36.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:03:36.558 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:03:36.598 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:03:36.598 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:03:36.598 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:36.598 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:03:36.598 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:03:36.598 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:36.598 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:03:36.598 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:03:36.598 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:03:36.608 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:03:36.748 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:03:36.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:03:36.748 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:36.748 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:36.748 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 18:03:36.748 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:03:36.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:03:36.748 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:36.748 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:36.748 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 18:03:36.938 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:03:36.938 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:03:36.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28482 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-17 18:03:36.938 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:03:36.938 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.129567793283129. ------
17-03-17 18:03:36.948 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:03:36.948 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13589 mm
17-03-17 18:03:36.948 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:03:36.948 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:36.948 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 18:03:36.948 -07 000000626 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 18:03:36.948 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 29685, sync = True, waitForSettling = False)
17-03-17 18:03:36.948 -07 000000551 INF: Z Motor: Moving to -0.135889 mm, started at -0.129568 mm, distance = -6.32 um
17-03-17 18:03:36.958 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:36.958 -07 000000551 INF: FPGA: Xmit ZDACW 29685\n [Z Motor]
17-03-17 18:03:36.958 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:03:36.968 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:36.968 -07 000000551 INF: FPGA: 'ZDACW 29685' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:03:36.968 -07 000000623 INF: FPGA: Recv YRDPOS 143082
17-03-17 18:03:36.978 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:03:36.978 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:03:36.978 -07 000000626 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:36.978 -07 000000626 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:03:36.978 -07 000000626 INF: Y Motor: Moving 1341 steps-18
17-03-17 18:03:36.988 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:36.988 -07 000000627 INF: FPGA: Recv ZDACR 29685
17-03-17 18:03:36.998 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:03:36.998 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:03:36.998 -07 000000551 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 18:03:37.148 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 18:03:37.148 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:03:37.148 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:37.158 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 407 ms.
17-03-17 18:03:37.158 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 18:03:37.158 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:37.158 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 18:03:37.158 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 18:03:37.158 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:03:37.168 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 18:03:37.178 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:03:37.178 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:03:37.368 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 18:03:37.368 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 18:03:37.398 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:37.408 -07 000000627 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:03:37.418 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:37.418 -07 000000626 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:37.418 -07 000000626 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:03:37.418 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.839 mm, average velocity = 2.124 mm/sec
17-03-17 18:03:38.368 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:38.368 -07 000000623 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:03:38.378 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:38.378 -07 000000626 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:38.398 -07 000000626 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:03:38.398 -07 000000626 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:03:38.398 -07 000000626 INF: Y Motor: Moved to 70.6890 after 1446 ms (table move)
17-03-17 18:03:38.398 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135889 mm (DAC = 29685)
17-03-17 18:03:38.398 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:38.398 -07 000000627 INF: FPGA: Recv ZSGSRD 30443
17-03-17 18:03:38.408 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:03:38.408 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:38.408 -07 000000551 INF: FPGA: Recv ZSGSRD 30437
17-03-17 18:03:38.418 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:38.418 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:38.418 -07 000000482 INF: FPGA: Recv ZSGSRD 30441
17-03-17 18:03:38.428 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:38.428 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:38.428 -07 000000551 INF: FPGA: Recv ZSGSRD 30445
17-03-17 18:03:38.438 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:38.438 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:38.438 -07 000000623 INF: FPGA: Recv ZSGSRD 30441
17-03-17 18:03:38.448 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:38.448 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:38.448 -07 000000541 INF: FPGA: Recv ZSGSRD 30448
17-03-17 18:03:38.458 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:38.458 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:38.458 -07 000000482 INF: FPGA: Recv ZSGSRD 30445
17-03-17 18:03:38.468 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:38.468 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:38.468 -07 000000551 INF: FPGA: Recv ZSGSRD 30442
17-03-17 18:03:38.478 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:38.478 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:38.478 -07 000000486 INF: FPGA: Recv ZSGSRD 30444
17-03-17 18:03:38.488 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:38.488 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:38.488 -07 000000409 INF: FPGA: Recv ZSGSRD 30439
17-03-17 18:03:38.498 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:38.498 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:38.498 -07 000000623 INF: FPGA: Recv ZPIEZORD 26322
17-03-17 18:03:38.508 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:38.508 -07 000000462 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.530 V. Piezo Error = -9.1 V.
17-03-17 18:03:38.508 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.9 um, Read 10 ADC samples: Avg = 30442 (-135.1 uncal um), Error = 0.8 uncal um, Median = 30442 (-135.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30437 (-135.1 uncal um), Max = 30448 (-135.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:03:38.508 -07 000000462 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30442, posNoise = 6, negNoise = 5
17-03-17 18:03:38.508 -07 000000462 INF: Z Motor: After move to -0.135889, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:38.508 -07 000000462 INF: Z Motor: Settle wait time = 1449 ms, measure time = 108 ms (allowed 150 ms), total time = 1557 ms
17-03-17 18:03:38.508 -07 000000462 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:03:38.558 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 18:03:38.558 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:03:38.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:38.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:38.558 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:38.558 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:38.558 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:03:38.558 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:38.558 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:03:38.558 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:03:38.568 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:03:38.568 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:03:38.578 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:03:38.578 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:03:38.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:03:38.628 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:03:38.828 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:03:38.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:03:38.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:03:38.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1177030416, 0x0, 559484976) start.
17-03-17 18:03:38.868 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:03:38.868 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 18:03:38.868 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 18:03:38.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1177030416, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:03:38.948 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:38.958 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:03:38.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:03:38.968 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:03:38.968 -07 000000626 INF: Autofocus start
17-03-17 18:03:38.968 -07 000000626 INF: MeasureProfile start
17-03-17 18:03:38.968 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:38.978 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:03:38.978 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:03:38.978 -07 000000626 INF: MeasureProfile done
17-03-17 18:03:38.978 -07 000000626 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:03:38.978 -07 000000626 INF: Autofocus finished
17-03-17 18:03:39.178 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:03:39.178 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:03:39.178 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.135889218030622. ----------
17-03-17 18:03:39.178 -07 000000610 INF: Cycle	8	Tile	14	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:03:39.188 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28209, sync = True, waitForSettling = True)
17-03-17 18:03:39.188 -07 000000610 INF: Z Motor: Moving to -0.129133 mm, started at -0.135889 mm, distance = 6.76 um
17-03-17 18:03:39.188 -07 000000610 INF: FPGA: Xmit ZDACW 28209\n [Z Motor]
17-03-17 18:03:39.188 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 18:03:39.198 -07 000000610 INF: FPGA: 'ZDACW 28209' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:39.198 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:39.198 -07 000000409 INF: FPGA: Recv ZDACR 28209
17-03-17 18:03:39.208 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:39.208 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:03:39.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:39.358 -07 000000623 INF: FPGA: Recv ZSGSRD 29389
17-03-17 18:03:39.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:39.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:39.368 -07 000000462 INF: FPGA: Recv ZSGSRD 29391
17-03-17 18:03:39.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:39.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:39.378 -07 000000551 INF: FPGA: Recv ZSGSRD 29389
17-03-17 18:03:39.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:39.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:39.388 -07 000000482 INF: FPGA: Recv ZSGSRD 29391
17-03-17 18:03:39.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:39.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:39.398 -07 000000626 INF: FPGA: Recv ZSGSRD 29390
17-03-17 18:03:39.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:39.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:39.408 -07 000000623 INF: FPGA: Recv ZSGSRD 29396
17-03-17 18:03:39.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:39.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:39.418 -07 000000627 INF: FPGA: Recv ZSGSRD 29388
17-03-17 18:03:39.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:39.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:39.428 -07 000000462 INF: FPGA: Recv ZSGSRD 29388
17-03-17 18:03:39.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:39.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:39.438 -07 000000551 INF: FPGA: Recv ZSGSRD 29390
17-03-17 18:03:39.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:39.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:39.448 -07 000000462 INF: FPGA: Recv ZSGSRD 29394
17-03-17 18:03:39.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:39.458 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:39.458 -07 000000623 INF: FPGA: Recv ZPIEZORD 24924
17-03-17 18:03:39.468 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:39.468 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.304 V. Piezo Error = -9.8 V.
17-03-17 18:03:39.468 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29391 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29390 (-128.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29388 (-128.3 uncal um), Max = 29396 (-128.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:03:39.468 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29391, posNoise = 5, negNoise = 3
17-03-17 18:03:39.468 -07 000000610 INF: Z Motor: After move to -0.129133, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:39.468 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:03:39.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:39.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:39.468 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:39.468 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:39.468 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:03:39.468 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:39.468 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:03:39.468 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:03:39.468 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:03:39.468 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:03:39.468 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:03:39.468 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:03:39.478 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:03:39.478 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:03:39.478 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:03:39.478 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:03:39.488 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:03:39.488 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:03:39.488 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:03:39.488 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:03:39.498 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28386 150\n [Camera]
17-03-17 18:03:39.698 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:03:40.088 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:03:40.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:03:40.088 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:40.088 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:40.088 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:03:40.088 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:03:40.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:03:40.088 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:40.088 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:40.088 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 18:03:40.278 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28386 776
17-03-17 18:03:40.428 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:03:40.488 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 18:03:40.488 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:03:40.488 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:40.488 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 18:03:40.488 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:03:40.488 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:40.488 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:03:40.498 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:03:40.498 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 18:03:40.498 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:03:40.618 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:03:40.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:03:40.618 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:40.618 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:40.618 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 18:03:40.618 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:03:40.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:03:40.618 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:40.618 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:40.618 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 18:03:40.808 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:03:40.808 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:03:40.808 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28386 150' command took 2 ms to send, 1305 ms to get response, and 1314 ms overall
17-03-17 18:03:40.808 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:03:40.808 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.129137371069631. ------
17-03-17 18:03:40.818 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:03:40.818 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13576 mm
17-03-17 18:03:40.818 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:03:40.818 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 18:03:40.818 -07 000000627 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 18:03:40.818 -07 000000409 INF: Z Motor: Entering MoveAbsStepped (DAC = 29656, sync = True, waitForSettling = False)
17-03-17 18:03:40.818 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:40.818 -07 000000409 INF: Z Motor: Moving to -0.135756 mm, started at -0.129137 mm, distance = -6.62 um
17-03-17 18:03:40.828 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:03:40.828 -07 000000409 INF: FPGA: Xmit ZDACW 29656\n [Z Motor]
17-03-17 18:03:40.828 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 18:03:40.838 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:40.838 -07 000000409 INF: FPGA: 'ZDACW 29656' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:03:40.838 -07 000000541 INF: FPGA: Recv YRDPOS 144772
17-03-17 18:03:40.848 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:03:40.848 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:03:40.848 -07 000000627 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:40.848 -07 000000627 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:03:40.848 -07 000000627 INF: Y Motor: Moving 1349 steps-28
17-03-17 18:03:40.858 -07 000000409 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:40.858 -07 000000462 INF: FPGA: Recv ZDACR 29656
17-03-17 18:03:40.868 -07 000000409 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:03:40.868 -07 000000409 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 18:03:40.868 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:03:41.028 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 18:03:41.028 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:03:41.028 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:41.028 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 18:03:41.028 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:03:41.028 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:41.028 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:03:41.028 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:03:41.028 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 18:03:41.038 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 18:03:41.048 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:03:41.048 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:03:41.238 -07 000000409 INF: FPGA: Recv YMVTILE
17-03-17 18:03:41.238 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 18:03:41.278 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:41.278 -07 000000626 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:03:41.288 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:41.288 -07 000000627 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:41.288 -07 000000627 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:03:41.288 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.158 mm/sec
17-03-17 18:03:41.438 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 3.964938,
17-03-17 18:03:41.558 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:03:41.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:03:42.238 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:42.238 -07 000000626 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:03:42.248 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:42.248 -07 000000627 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:42.268 -07 000000627 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:03:42.268 -07 000000627 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:03:42.268 -07 000000627 INF: Y Motor: Moved to 71.5195 after 1444 ms (table move)
17-03-17 18:03:42.268 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135756 mm (DAC = 29656)
17-03-17 18:03:42.268 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:42.268 -07 000000458 INF: FPGA: Recv ZSGSRD 30418
17-03-17 18:03:42.278 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:03:42.278 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:42.278 -07 000000462 INF: FPGA: Recv ZSGSRD 30418
17-03-17 18:03:42.288 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:42.288 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:42.288 -07 000000433 INF: FPGA: Recv ZSGSRD 30418
17-03-17 18:03:42.298 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:42.298 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:42.298 -07 000000462 INF: FPGA: Recv ZSGSRD 30424
17-03-17 18:03:42.308 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:42.308 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:42.308 -07 000000551 INF: FPGA: Recv ZSGSRD 30425
17-03-17 18:03:42.318 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:42.318 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:42.318 -07 000000626 INF: FPGA: Recv ZSGSRD 30421
17-03-17 18:03:42.328 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:42.328 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:42.328 -07 000000541 INF: FPGA: Recv ZSGSRD 30436
17-03-17 18:03:42.338 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:42.338 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:42.338 -07 000000462 INF: FPGA: Recv ZSGSRD 30416
17-03-17 18:03:42.348 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:42.348 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:42.348 -07 000000627 INF: FPGA: Recv ZSGSRD 30411
17-03-17 18:03:42.358 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:42.358 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:42.358 -07 000000561 INF: FPGA: Recv ZSGSRD 30418
17-03-17 18:03:42.368 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:42.368 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:42.368 -07 000000627 INF: FPGA: Recv ZPIEZORD 26307
17-03-17 18:03:42.378 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:42.408 -07 000000486 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.525 V. Piezo Error = -9.1 V.
17-03-17 18:03:42.408 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.8 um, Read 10 ADC samples: Avg = 30420 (-135.0 uncal um), Error = 0.8 uncal um, Median = 30418 (-134.9 uncal um), StdDev = 7 (0.0 uncal um), Range = 25 (0.2 uncal um), Min = 30411 (-134.9 uncal um), Max = 30436 (-135.1 uncal um), Pos Noise = 16 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:03:42.408 -07 000000486 INF: Z Motor: ADC noise = 16, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30420, posNoise = 16, negNoise = 9
17-03-17 18:03:42.408 -07 000000486 INF: Z Motor: After move to -0.135756, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:42.408 -07 000000486 INF: Z Motor: Settle wait time = 1448 ms, measure time = 142 ms (allowed 150 ms), total time = 1590 ms
17-03-17 18:03:42.408 -07 000000486 INF: Z Motor: Waiting extra 8 ms after reading position to reach expected total of 150 ms
17-03-17 18:03:42.418 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 18:03:42.418 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:03:42.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:42.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:42.418 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:42.418 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:42.418 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:03:42.418 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:42.418 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:03:42.418 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:03:42.428 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:03:42.428 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:03:42.438 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:03:42.438 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 18:03:42.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:03:42.488 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:03:42.688 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:03:42.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:03:42.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:03:42.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-17 18:03:42.728 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:03:42.728 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 18:03:42.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 285 ms overall
17-03-17 18:03:42.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:03:42.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:42.818 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:03:42.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 18:03:42.828 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:03:42.828 -07 000000541 INF: Autofocus start
17-03-17 18:03:42.828 -07 000000541 INF: MeasureProfile start
17-03-17 18:03:42.828 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:42.838 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:03:42.838 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:03:42.838 -07 000000541 INF: MeasureProfile done
17-03-17 18:03:42.838 -07 000000541 INF: X=32  Z correction [um]=0.1299841
17-03-17 18:03:42.838 -07 000000541 INF: Autofocus finished
17-03-17 18:03:43.038 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:03:43.038 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:03:43.038 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.135747885363503. ----------
17-03-17 18:03:43.038 -07 000000610 INF: Cycle	8	Tile	15	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:03:43.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28197, sync = True, waitForSettling = True)
17-03-17 18:03:43.048 -07 000000610 INF: Z Motor: Moving to -0.129078 mm, started at -0.135748 mm, distance = 6.67 um
17-03-17 18:03:43.048 -07 000000610 INF: FPGA: Xmit ZDACW 28197\n [Z Motor]
17-03-17 18:03:43.048 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 18:03:43.058 -07 000000610 INF: FPGA: 'ZDACW 28197' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:03:43.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:43.058 -07 000000627 INF: FPGA: Recv ZDACR 28197
17-03-17 18:03:43.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:43.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:03:43.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:43.218 -07 000000541 INF: FPGA: Recv ZSGSRD 29383
17-03-17 18:03:43.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:43.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:43.228 -07 000000458 INF: FPGA: Recv ZSGSRD 29385
17-03-17 18:03:43.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:43.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:43.238 -07 000000541 INF: FPGA: Recv ZSGSRD 29375
17-03-17 18:03:43.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:43.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:43.248 -07 000000626 INF: FPGA: Recv ZSGSRD 29380
17-03-17 18:03:43.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:43.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:43.258 -07 000000561 INF: FPGA: Recv ZSGSRD 29385
17-03-17 18:03:43.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:43.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:43.268 -07 000000433 INF: FPGA: Recv ZSGSRD 29388
17-03-17 18:03:43.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:43.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:43.278 -07 000000626 INF: FPGA: Recv ZSGSRD 29374
17-03-17 18:03:43.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:43.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:43.288 -07 000000462 INF: FPGA: Recv ZSGSRD 29381
17-03-17 18:03:43.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:43.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:43.298 -07 000000561 INF: FPGA: Recv ZSGSRD 29384
17-03-17 18:03:43.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:43.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:43.308 -07 000000551 INF: FPGA: Recv ZSGSRD 29381
17-03-17 18:03:43.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:43.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:43.318 -07 000000626 INF: FPGA: Recv ZPIEZORD 24909
17-03-17 18:03:43.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:43.328 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.303 V. Piezo Error = -9.8 V.
17-03-17 18:03:43.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29382 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29382 (-128.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29374 (-128.3 uncal um), Max = 29388 (-128.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:03:43.328 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29382, posNoise = 6, negNoise = 8
17-03-17 18:03:43.328 -07 000000610 INF: Z Motor: After move to -0.129078, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:43.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:03:43.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:43.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:43.328 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:43.328 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:43.328 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:03:43.328 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:43.328 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:03:43.328 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:03:43.328 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:03:43.328 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:03:43.328 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:03:43.328 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:03:43.338 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:03:43.338 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:03:43.338 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:03:43.338 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:03:43.348 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:03:43.348 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:03:43.348 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:03:43.348 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:03:43.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28374 150\n [Camera]
17-03-17 18:03:43.558 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:03:43.948 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:03:43.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:03:43.948 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:43.948 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:43.948 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 18:03:43.948 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:03:43.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:03:43.948 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:43.948 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:43.948 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 18:03:44.138 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28374 776
17-03-17 18:03:44.288 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:03:44.328 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:03:44.328 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:03:44.328 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:44.328 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:03:44.328 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:03:44.328 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:03:44.328 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:44.328 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:03:44.328 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:03:44.338 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:03:44.478 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:03:44.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:03:44.478 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:44.618 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:03:44.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:03:44.618 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:44.618 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:44.618 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 18:03:44.628 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:44.628 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:03:44.668 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:03:44.668 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:03:44.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28374 150' command took 2 ms to send, 1304 ms to get response, and 1313 ms overall
17-03-17 18:03:44.668 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:03:44.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51953125, Z-Position -0.129079553160355. ------
17-03-17 18:03:44.668 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:03:44.668 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13514 mm
17-03-17 18:03:44.668 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:03:44.678 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:44.678 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:03:44.678 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 18:03:44.678 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:03:44.678 -07 000000486 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 18:03:44.678 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 29520, sync = True, waitForSettling = False)
17-03-17 18:03:44.678 -07 000000551 INF: Z Motor: Moving to -0.135134 mm, started at -0.129080 mm, distance = -6.05 um
17-03-17 18:03:44.688 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:44.688 -07 000000462 INF: FPGA: Recv YRDPOS 146473
17-03-17 18:03:44.698 -07 000000551 INF: FPGA: Xmit ZDACW 29520\n [Z Motor]
17-03-17 18:03:44.698 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:03:44.698 -07 000000486 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:44.698 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 18:03:44.698 -07 000000486 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:03:44.698 -07 000000486 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:03:44.708 -07 000000551 INF: FPGA: 'ZDACW 29520' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:03:44.708 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:44.708 -07 000000627 INF: FPGA: Recv ZDACR 29520
17-03-17 18:03:44.718 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:44.718 -07 000000551 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 18:03:44.718 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:03:44.878 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:03:44.878 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 18:03:45.018 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 18:03:45.018 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:03:45.018 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:45.018 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:03:45.018 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:03:45.018 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:45.028 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:03:45.028 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:03:45.028 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 549 ms.
17-03-17 18:03:45.028 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 18:03:45.088 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 18:03:45.088 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 392 ms overall
17-03-17 18:03:45.128 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:45.128 -07 000000458 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:03:45.138 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:03:45.138 -07 000000486 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:45.138 -07 000000486 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 18:03:45.138 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.843 mm, average velocity = 2.145 mm/sec
17-03-17 18:03:46.088 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:46.088 -07 000000433 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:03:46.098 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:46.098 -07 000000486 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:46.128 -07 000000486 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:03:46.128 -07 000000486 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:03:46.128 -07 000000486 INF: Y Motor: Moved to 72.3501 after 1448 ms (table move)
17-03-17 18:03:46.128 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135134 mm (DAC = 29520)
17-03-17 18:03:46.128 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:46.128 -07 000000627 INF: FPGA: Recv ZSGSRD 30330
17-03-17 18:03:46.138 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:03:46.138 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:46.138 -07 000000433 INF: FPGA: Recv ZSGSRD 30321
17-03-17 18:03:46.148 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:46.148 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:46.148 -07 000000626 INF: FPGA: Recv ZSGSRD 30328
17-03-17 18:03:46.158 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:46.158 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:46.158 -07 000000627 INF: FPGA: Recv ZSGSRD 30323
17-03-17 18:03:46.168 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:46.168 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:46.168 -07 000000462 INF: FPGA: Recv ZSGSRD 30325
17-03-17 18:03:46.178 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:03:46.178 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:46.178 -07 000000626 INF: FPGA: Recv ZSGSRD 30328
17-03-17 18:03:46.188 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:46.188 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:46.188 -07 000000626 INF: FPGA: Recv ZSGSRD 30320
17-03-17 18:03:46.198 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:46.198 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:46.198 -07 000000626 INF: FPGA: Recv ZSGSRD 30323
17-03-17 18:03:46.208 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:46.208 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:46.208 -07 000000626 INF: FPGA: Recv ZSGSRD 30326
17-03-17 18:03:46.218 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:46.218 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:46.218 -07 000000626 INF: FPGA: Recv ZSGSRD 30324
17-03-17 18:03:46.228 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:46.228 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:46.228 -07 000000433 INF: FPGA: Recv ZPIEZORD 26214
17-03-17 18:03:46.238 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:46.238 -07 000000541 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.504 V. Piezo Error = -9.0 V.
17-03-17 18:03:46.238 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.1 um, Read 10 ADC samples: Avg = 30325 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30324 (-134.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30320 (-134.3 uncal um), Max = 30330 (-134.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:03:46.238 -07 000000541 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30325, posNoise = 5, negNoise = 5
17-03-17 18:03:46.238 -07 000000541 INF: Z Motor: After move to -0.135134, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:46.238 -07 000000541 INF: Z Motor: Settle wait time = 1451 ms, measure time = 105 ms (allowed 150 ms), total time = 1556 ms
17-03-17 18:03:46.238 -07 000000541 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:03:46.288 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-17 18:03:46.298 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:03:46.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:46.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:46.308 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:46.308 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:46.308 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:03:46.308 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:46.308 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:03:46.308 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:03:46.318 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:03:46.318 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:03:46.328 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:03:46.328 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:03:46.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:03:46.368 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:03:46.558 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:03:46.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:03:46.568 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:03:46.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:03:46.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:03:46.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-17 18:03:46.608 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:03:46.608 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 18:03:46.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 18:03:46.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 18:03:46.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:46.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:03:46.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 18:03:46.808 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 3.973092,
17-03-17 18:03:46.808 -07 000000433 INF: Autofocus start
17-03-17 18:03:46.808 -07 000000433 INF: MeasureProfile start
17-03-17 18:03:46.818 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:03:46.818 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:46.818 -07 000000433 INF: MeasureProfile done
17-03-17 18:03:46.818 -07 000000433 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:03:46.818 -07 000000433 INF: Autofocus finished
17-03-17 18:03:46.828 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:03:46.838 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:03:47.038 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:03:47.038 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 18:03:47.038 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.135137585210036. ----------
17-03-17 18:03:47.038 -07 000000610 INF: Cycle	8	Tile	16	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:03:47.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28015, sync = True, waitForSettling = True)
17-03-17 18:03:47.048 -07 000000610 INF: Z Motor: Moving to -0.128244 mm, started at -0.135138 mm, distance = 6.89 um
17-03-17 18:03:47.048 -07 000000610 INF: FPGA: Xmit ZDACW 28015\n [Z Motor]
17-03-17 18:03:47.048 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 18:03:47.058 -07 000000610 INF: FPGA: 'ZDACW 28015' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:03:47.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:47.058 -07 000000627 INF: FPGA: Recv ZDACR 28015
17-03-17 18:03:47.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:47.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:03:47.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:47.218 -07 000000541 INF: FPGA: Recv ZSGSRD 29251
17-03-17 18:03:47.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:47.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:47.228 -07 000000462 INF: FPGA: Recv ZSGSRD 29253
17-03-17 18:03:47.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:47.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:47.238 -07 000000576 INF: FPGA: Recv ZSGSRD 29248
17-03-17 18:03:47.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:47.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:47.248 -07 000000462 INF: FPGA: Recv ZSGSRD 29256
17-03-17 18:03:47.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:47.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:47.258 -07 000000475 INF: FPGA: Recv ZSGSRD 29255
17-03-17 18:03:47.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:47.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:47.268 -07 000000576 INF: FPGA: Recv ZSGSRD 29250
17-03-17 18:03:47.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:47.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:47.278 -07 000000541 INF: FPGA: Recv ZSGSRD 29257
17-03-17 18:03:47.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:47.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:47.288 -07 000000576 INF: FPGA: Recv ZSGSRD 29260
17-03-17 18:03:47.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:47.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:47.298 -07 000000541 INF: FPGA: Recv ZSGSRD 29253
17-03-17 18:03:47.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:47.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:47.308 -07 000000462 INF: FPGA: Recv ZSGSRD 29248
17-03-17 18:03:47.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:47.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:47.318 -07 000000576 INF: FPGA: Recv ZPIEZORD 24777
17-03-17 18:03:47.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:47.328 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.275 V. Piezo Error = -9.8 V.
17-03-17 18:03:47.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29253 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29253 (-127.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29248 (-127.4 uncal um), Max = 29260 (-127.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:03:47.328 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29253, posNoise = 7, negNoise = 5
17-03-17 18:03:47.328 -07 000000610 INF: Z Motor: After move to -0.128244, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:47.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:03:47.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:47.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:47.328 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:03:47.328 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:47.328 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:47.328 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:47.328 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:03:47.328 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:03:47.328 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:03:47.328 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:03:47.328 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:03:47.328 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:03:47.338 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:03:47.338 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:03:47.338 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:03:47.338 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:03:47.348 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:03:47.348 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 18:03:47.348 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:03:47.348 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:03:47.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28192 150\n [Camera]
17-03-17 18:03:47.548 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:03:47.948 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:03:47.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:03:47.948 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:47.948 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:03:47.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:03:47.948 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:47.958 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:47.958 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1443674384, 0x0, 391868352) start.
17-03-17 18:03:47.958 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:47.958 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1479096648, 0x0, 418435064) start.
17-03-17 18:03:48.138 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28192 776
17-03-17 18:03:48.288 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:03:48.328 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1443674384, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 18:03:48.328 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 18:03:48.328 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:48.328 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1479096648, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 18:03:48.438 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 18:03:48.438 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:48.438 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 113 ms.
17-03-17 18:03:48.438 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 497 ms.
17-03-17 18:03:48.448 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:03:48.448 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 502 ms.
17-03-17 18:03:48.478 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:03:48.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:03:48.478 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:48.478 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:03:48.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:03:48.478 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:48.478 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:48.478 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:03:48.478 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:48.478 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:03:48.668 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:03:48.668 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:03:48.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28192 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-17 18:03:48.668 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:03:48.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.128250829794068. ------
17-03-17 18:03:48.678 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:03:48.678 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13488 mm
17-03-17 18:03:48.678 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:03:48.678 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:48.678 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 18:03:48.678 -07 000000480 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 18:03:48.678 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 29465, sync = True, waitForSettling = False)
17-03-17 18:03:48.678 -07 000000627 INF: Z Motor: Moving to -0.134882 mm, started at -0.128251 mm, distance = -6.63 um
17-03-17 18:03:48.688 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:48.688 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:48.688 -07 000000576 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:03:48.698 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:03:48.698 -07 000000480 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:48.698 -07 000000480 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:03:48.698 -07 000000480 INF: Y Motor: Moving 1348 steps-26
17-03-17 18:03:48.698 -07 000000627 INF: FPGA: Xmit ZDACW 29465\n [Z Motor]
17-03-17 18:03:48.698 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 18:03:48.708 -07 000000627 INF: FPGA: 'ZDACW 29465' command took 1 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:03:48.708 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:03:48.718 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:03:48.728 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:48.728 -07 000000541 INF: FPGA: Recv ZDACR 29465
17-03-17 18:03:48.738 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:03:48.738 -07 000000627 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 18:03:48.878 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 18:03:48.878 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:03:48.878 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:48.878 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 18:03:48.878 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:03:48.878 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:48.888 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:03:48.888 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 18:03:48.888 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:03:48.888 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:03:48.908 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:03:48.908 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 18:03:49.088 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 18:03:49.088 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:03:49.128 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:49.128 -07 000000458 INF: FPGA: Recv YRDPOS 149865
17-03-17 18:03:49.138 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:49.138 -07 000000480 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:49.138 -07 000000480 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 18:03:49.138 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.122 mm/sec
17-03-17 18:03:50.088 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:50.088 -07 000000476 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:03:50.098 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:50.098 -07 000000480 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:50.118 -07 000000480 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:03:50.118 -07 000000480 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:03:50.118 -07 000000480 INF: Y Motor: Moved to 73.1768 after 1435 ms (table move)
17-03-17 18:03:50.118 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134882 mm (DAC = 29465)
17-03-17 18:03:50.118 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:50.128 -07 000000541 INF: FPGA: Recv ZSGSRD 30283
17-03-17 18:03:50.128 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-17 18:03:50.128 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:50.128 -07 000000541 INF: FPGA: Recv ZSGSRD 30289
17-03-17 18:03:50.138 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:03:50.138 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:50.138 -07 000000475 INF: FPGA: Recv ZSGSRD 30280
17-03-17 18:03:50.148 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:50.148 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:50.148 -07 000000475 INF: FPGA: Recv ZSGSRD 30278
17-03-17 18:03:50.158 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:50.158 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:50.158 -07 000000475 INF: FPGA: Recv ZSGSRD 30291
17-03-17 18:03:50.168 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:50.168 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:50.168 -07 000000475 INF: FPGA: Recv ZSGSRD 30292
17-03-17 18:03:50.178 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:50.178 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:50.178 -07 000000541 INF: FPGA: Recv ZSGSRD 30283
17-03-17 18:03:50.188 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:50.188 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:50.188 -07 000000541 INF: FPGA: Recv ZSGSRD 30286
17-03-17 18:03:50.198 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:50.198 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:50.198 -07 000000541 INF: FPGA: Recv ZSGSRD 30292
17-03-17 18:03:50.208 -07 000000561 INF: FPGA: 'ZSGSRD' command took 6 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:50.208 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:50.208 -07 000000541 INF: FPGA: Recv ZSGSRD 30292
17-03-17 18:03:50.218 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:50.218 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:50.218 -07 000000541 INF: FPGA: Recv ZPIEZORD 26210
17-03-17 18:03:50.228 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:50.228 -07 000000561 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.496 V. Piezo Error = -9.0 V.
17-03-17 18:03:50.228 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30287 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30288 (-134.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30278 (-134.0 uncal um), Max = 30292 (-134.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:03:50.228 -07 000000561 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30287, posNoise = 5, negNoise = 9
17-03-17 18:03:50.228 -07 000000561 INF: Z Motor: After move to -0.134882, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:50.228 -07 000000561 INF: Z Motor: Settle wait time = 1439 ms, measure time = 104 ms (allowed 150 ms), total time = 1543 ms
17-03-17 18:03:50.228 -07 000000561 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 18:03:50.278 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 18:03:50.278 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:03:50.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:50.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:50.278 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:50.288 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:03:50.288 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:50.288 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:50.288 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:03:50.288 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:03:50.288 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:03:50.288 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:03:50.298 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:03:50.298 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 18:03:50.298 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:03:50.338 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:03:50.538 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:03:50.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:03:50.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:03:50.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:03:50.578 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:03:50.578 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 18:03:50.578 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 18:03:50.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:03:50.668 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:50.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:03:50.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 18:03:50.778 -07 000000541 INF: Autofocus start
17-03-17 18:03:50.778 -07 000000541 INF: MeasureProfile start
17-03-17 18:03:50.778 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:03:50.778 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:50.788 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:03:50.788 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:03:50.788 -07 000000541 INF: MeasureProfile done
17-03-17 18:03:50.788 -07 000000541 INF: X=-5  Z correction [um]=-0.02774208
17-03-17 18:03:50.788 -07 000000541 INF: Autofocus finished
17-03-17 18:03:50.988 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:03:50.988 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:03:50.988 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.134893465148649. ----------
17-03-17 18:03:50.988 -07 000000610 INF: Cycle	8	Tile	17	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:03:50.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27972, sync = True, waitForSettling = True)
17-03-17 18:03:50.998 -07 000000610 INF: Z Motor: Moving to -0.128048 mm, started at -0.134893 mm, distance = 6.85 um
17-03-17 18:03:50.998 -07 000000610 INF: FPGA: Xmit ZDACW 27972\n [Z Motor]
17-03-17 18:03:50.998 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 18:03:51.008 -07 000000610 INF: FPGA: 'ZDACW 27972' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:03:51.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:51.008 -07 000000551 INF: FPGA: Recv ZDACR 27972
17-03-17 18:03:51.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:51.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:03:51.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:51.168 -07 000000551 INF: FPGA: Recv ZSGSRD 29223
17-03-17 18:03:51.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:51.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:51.178 -07 000000541 INF: FPGA: Recv ZSGSRD 29223
17-03-17 18:03:51.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:51.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:51.188 -07 000000541 INF: FPGA: Recv ZSGSRD 29226
17-03-17 18:03:51.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:51.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:51.198 -07 000000541 INF: FPGA: Recv ZSGSRD 29218
17-03-17 18:03:51.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:51.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:51.208 -07 000000541 INF: FPGA: Recv ZSGSRD 29225
17-03-17 18:03:51.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:51.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:51.218 -07 000000541 INF: FPGA: Recv ZSGSRD 29225
17-03-17 18:03:51.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:51.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:51.228 -07 000000561 INF: FPGA: Recv ZSGSRD 29222
17-03-17 18:03:51.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:51.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:51.238 -07 000000576 INF: FPGA: Recv ZSGSRD 29217
17-03-17 18:03:51.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:51.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:51.248 -07 000000576 INF: FPGA: Recv ZSGSRD 29221
17-03-17 18:03:51.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:51.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:51.258 -07 000000458 INF: FPGA: Recv ZSGSRD 29226
17-03-17 18:03:51.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:51.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:51.268 -07 000000458 INF: FPGA: Recv ZPIEZORD 24721
17-03-17 18:03:51.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:51.278 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.268 V. Piezo Error = -9.9 V.
17-03-17 18:03:51.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29223 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29223 (-127.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29217 (-127.2 uncal um), Max = 29226 (-127.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:03:51.278 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29223, posNoise = 3, negNoise = 6
17-03-17 18:03:51.278 -07 000000610 INF: Z Motor: After move to -0.128048, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:51.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:03:51.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:51.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:51.278 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:51.278 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:51.278 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:03:51.278 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:51.278 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:03:51.278 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:03:51.278 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:03:51.278 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:03:51.278 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:03:51.278 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:03:51.288 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:03:51.288 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:03:51.288 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:03:51.288 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:03:51.298 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:03:51.298 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:03:51.298 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:03:51.298 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:03:51.298 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28149 150\n [Camera]
17-03-17 18:03:51.498 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:03:51.558 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:03:51.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:03:51.898 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:03:51.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:03:51.898 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:51.898 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:51.898 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2181237920, 0x0, 391868352) start.
17-03-17 18:03:51.898 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:03:51.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:03:51.898 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:51.898 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:51.898 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) start.
17-03-17 18:03:52.088 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28149 776
17-03-17 18:03:52.188 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 3.98264,
17-03-17 18:03:52.238 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:03:52.298 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2181237920, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 18:03:52.298 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:03:52.298 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:52.298 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:03:52.298 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:03:52.298 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 18:03:52.298 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:03:52.298 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:52.308 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:03:52.308 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:03:52.428 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:03:52.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:03:52.428 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:52.428 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:52.428 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1053888560, 0x0, 391868352) start.
17-03-17 18:03:52.428 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:03:52.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:03:52.428 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:52.428 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:52.438 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1089310824, 0x0, 418435064) start.
17-03-17 18:03:52.618 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:03:52.618 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:03:52.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28149 150' command took 2 ms to send, 1303 ms to get response, and 1315 ms overall
17-03-17 18:03:52.618 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:03:52.618 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1767578125, Z-Position -0.128058103429815. ------
17-03-17 18:03:52.618 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:03:52.628 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13441 mm
17-03-17 18:03:52.628 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:03:52.628 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:52.628 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29363, sync = True, waitForSettling = False)
17-03-17 18:03:52.628 -07 000000576 INF: Z Motor: Moving to -0.134415 mm, started at -0.128058 mm, distance = -6.36 um
17-03-17 18:03:52.628 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 18:03:52.628 -07 000000459 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 18:03:52.638 -07 000000576 INF: FPGA: Xmit ZDACW 29363\n [Z Motor]
17-03-17 18:03:52.638 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:03:52.638 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 18:03:52.648 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:52.648 -07 000000576 INF: FPGA: 'ZDACW 29363' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:03:52.648 -07 000000458 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:03:52.658 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:03:52.658 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:03:52.658 -07 000000459 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:52.658 -07 000000459 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:03:52.658 -07 000000459 INF: Y Motor: Moving 1353 steps-33
17-03-17 18:03:52.668 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:52.668 -07 000000551 INF: FPGA: Recv ZDACR 29363
17-03-17 18:03:52.678 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:03:52.678 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:03:52.678 -07 000000576 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 18:03:52.828 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1053888560, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:03:52.828 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:03:52.828 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:52.838 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1089310824, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 18:03:52.838 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:03:52.838 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:52.838 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 12 ms.
17-03-17 18:03:52.838 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 18:03:52.838 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:03:52.848 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 18:03:52.858 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:03:52.858 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 18:03:53.048 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 18:03:53.048 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 18:03:53.078 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:53.078 -07 000000541 INF: FPGA: Recv YRDPOS 151569
17-03-17 18:03:53.088 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:03:53.088 -07 000000459 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:53.088 -07 000000459 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 18:03:53.088 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.131 mm/sec
17-03-17 18:03:54.038 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:54.038 -07 000000561 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:03:54.048 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:54.048 -07 000000459 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:54.058 -07 000000459 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:03:54.058 -07 000000459 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:03:54.058 -07 000000459 INF: Y Motor: Moved to 74.0088 after 1430 ms (table move)
17-03-17 18:03:54.058 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134415 mm (DAC = 29363)
17-03-17 18:03:54.058 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:54.068 -07 000000458 INF: FPGA: Recv ZSGSRD 30213
17-03-17 18:03:54.068 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 18:03:54.068 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:54.068 -07 000000561 INF: FPGA: Recv ZSGSRD 30221
17-03-17 18:03:54.078 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:03:54.078 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:54.078 -07 000000627 INF: FPGA: Recv ZSGSRD 30211
17-03-17 18:03:54.088 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:54.088 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:54.088 -07 000000561 INF: FPGA: Recv ZSGSRD 30205
17-03-17 18:03:54.098 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:54.098 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:54.098 -07 000000576 INF: FPGA: Recv ZSGSRD 30210
17-03-17 18:03:54.108 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:54.108 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:54.108 -07 000000627 INF: FPGA: Recv ZSGSRD 30208
17-03-17 18:03:54.118 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:54.118 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:54.118 -07 000000475 INF: FPGA: Recv ZSGSRD 30226
17-03-17 18:03:54.128 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:54.128 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:54.128 -07 000000541 INF: FPGA: Recv ZSGSRD 30220
17-03-17 18:03:54.138 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:54.138 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:54.138 -07 000000475 INF: FPGA: Recv ZSGSRD 30215
17-03-17 18:03:54.148 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:54.148 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:54.148 -07 000000458 INF: FPGA: Recv ZSGSRD 30210
17-03-17 18:03:54.158 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:54.158 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:54.158 -07 000000475 INF: FPGA: Recv ZPIEZORD 26130
17-03-17 18:03:54.168 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:54.168 -07 000000462 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.481 V. Piezo Error = -9.0 V.
17-03-17 18:03:54.168 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.4 um, Read 10 ADC samples: Avg = 30214 (-133.6 uncal um), Error = 0.8 uncal um, Median = 30212 (-133.6 uncal um), StdDev = 7 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30205 (-133.6 uncal um), Max = 30226 (-133.7 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:03:54.168 -07 000000462 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30214, posNoise = 12, negNoise = 9
17-03-17 18:03:54.168 -07 000000462 INF: Z Motor: After move to -0.134415, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:54.168 -07 000000462 INF: Z Motor: Settle wait time = 1434 ms, measure time = 102 ms (allowed 150 ms), total time = 1536 ms
17-03-17 18:03:54.168 -07 000000462 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 18:03:54.218 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1588 ms
17-03-17 18:03:54.218 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:03:54.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:54.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:54.218 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:54.228 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:54.228 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:03:54.228 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:54.228 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:03:54.228 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:03:54.228 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:03:54.228 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:03:54.238 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:03:54.238 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:03:54.238 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:03:54.278 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:03:54.478 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:03:54.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:03:54.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:03:54.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2252082448, 0x0, 559484976) start.
17-03-17 18:03:54.518 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:03:54.528 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 18:03:54.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 287 ms overall
17-03-17 18:03:54.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2252082448, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:03:54.608 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:54.608 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:03:54.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:03:54.628 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:03:54.628 -07 000000459 INF: Autofocus start
17-03-17 18:03:54.628 -07 000000459 INF: MeasureProfile start
17-03-17 18:03:54.628 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:54.638 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:03:54.638 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:03:54.638 -07 000000459 INF: MeasureProfile done
17-03-17 18:03:54.638 -07 000000459 INF: X=10  Z correction [um]=0.02415557
17-03-17 18:03:54.638 -07 000000459 INF: Autofocus finished
17-03-17 18:03:54.838 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:03:54.838 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:03:54.838 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.134424497662301. ----------
17-03-17 18:03:54.838 -07 000000610 INF: Cycle	8	Tile	18	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:03:54.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27881, sync = True, waitForSettling = True)
17-03-17 18:03:54.848 -07 000000610 INF: Z Motor: Moving to -0.127631 mm, started at -0.134424 mm, distance = 6.79 um
17-03-17 18:03:54.848 -07 000000610 INF: FPGA: Xmit ZDACW 27881\n [Z Motor]
17-03-17 18:03:54.848 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 18:03:54.858 -07 000000610 INF: FPGA: 'ZDACW 27881' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:03:54.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:54.858 -07 000000475 INF: FPGA: Recv ZDACR 27881
17-03-17 18:03:54.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:54.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:03:55.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:55.018 -07 000000561 INF: FPGA: Recv ZSGSRD 29162
17-03-17 18:03:55.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:55.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:55.028 -07 000000475 INF: FPGA: Recv ZSGSRD 29156
17-03-17 18:03:55.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:55.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:55.038 -07 000000576 INF: FPGA: Recv ZSGSRD 29152
17-03-17 18:03:55.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:55.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:55.048 -07 000000541 INF: FPGA: Recv ZSGSRD 29157
17-03-17 18:03:55.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:55.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:55.058 -07 000000576 INF: FPGA: Recv ZSGSRD 29162
17-03-17 18:03:55.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:55.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:55.068 -07 000000458 INF: FPGA: Recv ZSGSRD 29164
17-03-17 18:03:55.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:55.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:55.078 -07 000000475 INF: FPGA: Recv ZSGSRD 29158
17-03-17 18:03:55.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:55.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:55.088 -07 000000561 INF: FPGA: Recv ZSGSRD 29155
17-03-17 18:03:55.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:55.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:55.098 -07 000000576 INF: FPGA: Recv ZSGSRD 29164
17-03-17 18:03:55.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:55.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:55.108 -07 000000475 INF: FPGA: Recv ZSGSRD 29156
17-03-17 18:03:55.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:55.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:55.118 -07 000000551 INF: FPGA: Recv ZPIEZORD 24689
17-03-17 18:03:55.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:55.128 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.254 V. Piezo Error = -9.8 V.
17-03-17 18:03:55.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.6 um, Read 10 ADC samples: Avg = 29159 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29158 (-126.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29152 (-126.8 uncal um), Max = 29164 (-126.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:03:55.128 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29159, posNoise = 5, negNoise = 7
17-03-17 18:03:55.128 -07 000000610 INF: Z Motor: After move to -0.127631, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:55.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:03:55.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:55.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:55.128 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:55.128 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:03:55.128 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:55.128 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:03:55.128 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:03:55.128 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:55.128 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:03:55.128 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:03:55.128 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:03:55.128 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:03:55.138 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:03:55.138 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:03:55.138 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:03:55.138 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:03:55.148 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:03:55.148 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:03:55.148 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:03:55.148 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:03:55.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28057 150\n [Camera]
17-03-17 18:03:55.348 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:03:55.738 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:03:55.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:03:55.748 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:55.748 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:55.748 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1124733088, 0x0, 391868352) start.
17-03-17 18:03:55.748 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:03:55.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:03:55.748 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:55.748 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:55.748 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:03:55.938 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28057 776
17-03-17 18:03:56.088 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:03:56.148 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1124733088, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 18:03:56.148 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:03:56.148 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:56.148 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 18:03:56.148 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:03:56.148 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:56.158 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:03:56.158 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 18:03:56.158 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:03:56.158 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 18:03:56.278 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:03:56.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:03:56.278 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:56.278 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:56.278 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 18:03:56.278 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:03:56.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:03:56.278 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:56.278 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:56.278 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 18:03:56.468 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:03:56.468 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:03:56.468 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28057 150' command took 4 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-17 18:03:56.468 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:03:56.468 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.127646953852743. ------
17-03-17 18:03:56.468 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13392 mm
17-03-17 18:03:56.468 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:03:56.468 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:03:56.478 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 18:03:56.478 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 29255, sync = True, waitForSettling = False)
17-03-17 18:03:56.478 -07 000000475 INF: Z Motor: Moving to -0.133921 mm, started at -0.127647 mm, distance = -6.27 um
17-03-17 18:03:56.478 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:56.478 -07 000000627 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 18:03:56.488 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:56.488 -07 000000475 INF: FPGA: Xmit ZDACW 29255\n [Z Motor]
17-03-17 18:03:56.488 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 18:03:56.498 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:56.498 -07 000000475 INF: FPGA: 'ZDACW 29255' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:03:56.498 -07 000000561 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:03:56.508 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:03:56.508 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:03:56.508 -07 000000627 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:56.508 -07 000000627 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:03:56.508 -07 000000627 INF: Y Motor: Moving 1350 steps-29
17-03-17 18:03:56.518 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:56.518 -07 000000593 INF: FPGA: Recv ZDACR 29255
17-03-17 18:03:56.528 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:03:56.528 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:03:56.528 -07 000000475 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 18:03:56.558 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:03:56.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 7. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:03:56.678 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 18:03:56.678 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:03:56.678 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:56.688 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 407 ms.
17-03-17 18:03:56.688 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 18:03:56.688 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:56.688 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:03:56.688 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 18:03:56.688 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 18:03:56.698 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 18:03:56.708 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:03:56.708 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 227 ms overall
17-03-17 18:03:56.898 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 18:03:56.898 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:03:56.918 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:56.928 -07 000000482 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:03:56.928 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 18:03:56.928 -07 000000627 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:56.928 -07 000000627 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 18:03:56.928 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-17 18:03:57.548 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 4.019446,
17-03-17 18:03:57.878 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:03:57.878 -07 000000551 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:03:57.888 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:57.888 -07 000000627 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:03:57.898 -07 000000627 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:03:57.898 -07 000000627 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:03:57.898 -07 000000627 INF: Y Motor: Moved to 74.8325 after 1422 ms (table move)
17-03-17 18:03:57.898 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133921 mm (DAC = 29255)
17-03-17 18:03:57.898 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:57.908 -07 000000623 INF: FPGA: Recv ZSGSRD 30143
17-03-17 18:03:57.908 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 18:03:57.908 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:57.908 -07 000000486 INF: FPGA: Recv ZSGSRD 30136
17-03-17 18:03:57.918 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:03:57.918 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:57.918 -07 000000576 INF: FPGA: Recv ZSGSRD 30137
17-03-17 18:03:57.928 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:57.928 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:57.928 -07 000000627 INF: FPGA: Recv ZSGSRD 30142
17-03-17 18:03:57.938 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:57.938 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:57.938 -07 000000623 INF: FPGA: Recv ZSGSRD 30128
17-03-17 18:03:57.948 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:57.948 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:57.948 -07 000000462 INF: FPGA: Recv ZSGSRD 30131
17-03-17 18:03:57.958 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:57.958 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:57.958 -07 000000482 INF: FPGA: Recv ZSGSRD 30135
17-03-17 18:03:57.968 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:57.968 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:57.968 -07 000000623 INF: FPGA: Recv ZSGSRD 30147
17-03-17 18:03:57.978 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:57.978 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:57.978 -07 000000462 INF: FPGA: Recv ZSGSRD 30144
17-03-17 18:03:57.988 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:57.988 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:57.988 -07 000000541 INF: FPGA: Recv ZSGSRD 30135
17-03-17 18:03:57.998 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:57.998 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:57.998 -07 000000623 INF: FPGA: Recv ZPIEZORD 25985
17-03-17 18:03:58.008 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:58.008 -07 000000458 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.464 V. Piezo Error = -9.1 V.
17-03-17 18:03:58.008 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.9 um, Read 10 ADC samples: Avg = 30138 (-133.1 uncal um), Error = 0.8 uncal um, Median = 30136 (-133.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30128 (-133.1 uncal um), Max = 30147 (-133.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:03:58.008 -07 000000458 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30138, posNoise = 9, negNoise = 10
17-03-17 18:03:58.008 -07 000000458 INF: Z Motor: After move to -0.133921, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:58.008 -07 000000458 INF: Z Motor: Settle wait time = 1426 ms, measure time = 101 ms (allowed 150 ms), total time = 1527 ms
17-03-17 18:03:58.008 -07 000000458 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 18:03:58.058 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1580 ms
17-03-17 18:03:58.058 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:03:58.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:58.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:58.058 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:58.058 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:58.058 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:03:58.058 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:58.058 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:03:58.058 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:03:58.068 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:03:58.068 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:03:58.078 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:03:58.078 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 18:03:58.078 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:03:58.128 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:03:58.328 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:03:58.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:03:58.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:03:58.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1160155352, 0x0, 559484976) start.
17-03-17 18:03:58.358 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:03:58.368 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 18:03:58.368 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:03:58.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1160155352, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:03:58.468 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:03:58.468 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:03:58.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:03:58.568 -07 000000561 INF: Autofocus start
17-03-17 18:03:58.568 -07 000000561 INF: MeasureProfile start
17-03-17 18:03:58.568 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:03:58.568 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:03:58.578 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:03:58.578 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:03:58.578 -07 000000561 INF: MeasureProfile done
17-03-17 18:03:58.578 -07 000000561 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:03:58.578 -07 000000561 INF: Autofocus finished
17-03-17 18:03:58.778 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:03:58.778 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:03:58.788 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.133936257539527. ----------
17-03-17 18:03:58.788 -07 000000610 INF: Cycle	8	Tile	19	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:03:58.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27762, sync = True, waitForSettling = True)
17-03-17 18:03:58.788 -07 000000610 INF: Z Motor: Moving to -0.127086 mm, started at -0.133936 mm, distance = 6.85 um
17-03-17 18:03:58.788 -07 000000610 INF: FPGA: Xmit ZDACW 27762\n [Z Motor]
17-03-17 18:03:58.788 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 18:03:58.798 -07 000000610 INF: FPGA: 'ZDACW 27762' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:03:58.798 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:03:58.798 -07 000000541 INF: FPGA: Recv ZDACR 27762
17-03-17 18:03:58.808 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:58.808 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:03:58.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:58.958 -07 000000458 INF: FPGA: Recv ZSGSRD 29067
17-03-17 18:03:58.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:03:58.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:58.968 -07 000000459 INF: FPGA: Recv ZSGSRD 29071
17-03-17 18:03:58.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:58.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:58.978 -07 000000561 INF: FPGA: Recv ZSGSRD 29075
17-03-17 18:03:58.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:58.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:58.988 -07 000000409 INF: FPGA: Recv ZSGSRD 29069
17-03-17 18:03:58.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:58.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:58.998 -07 000000482 INF: FPGA: Recv ZSGSRD 29076
17-03-17 18:03:59.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:59.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:59.008 -07 000000409 INF: FPGA: Recv ZSGSRD 29075
17-03-17 18:03:59.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:59.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:59.018 -07 000000462 INF: FPGA: Recv ZSGSRD 29076
17-03-17 18:03:59.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:59.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:59.028 -07 000000561 INF: FPGA: Recv ZSGSRD 29065
17-03-17 18:03:59.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:59.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:59.038 -07 000000459 INF: FPGA: Recv ZSGSRD 29067
17-03-17 18:03:59.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:59.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:03:59.048 -07 000000458 INF: FPGA: Recv ZSGSRD 29075
17-03-17 18:03:59.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:59.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:03:59.058 -07 000000462 INF: FPGA: Recv ZPIEZORD 24623
17-03-17 18:03:59.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:03:59.068 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.236 V. Piezo Error = -9.8 V.
17-03-17 18:03:59.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.1 um, Read 10 ADC samples: Avg = 29072 (-126.3 uncal um), Error = 0.8 uncal um, Median = 29073 (-126.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29065 (-126.3 uncal um), Max = 29076 (-126.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:03:59.068 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29072, posNoise = 4, negNoise = 7
17-03-17 18:03:59.068 -07 000000610 INF: Z Motor: After move to -0.127086, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:03:59.068 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 18:03:59.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:03:59.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:03:59.068 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:03:59.068 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:03:59.068 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:03:59.068 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:03:59.068 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:03:59.068 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:03:59.068 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:03:59.068 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:03:59.068 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:03:59.068 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:03:59.078 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:03:59.078 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:03:59.078 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:03:59.078 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:03:59.078 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:03:59.078 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:03:59.088 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:03:59.088 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:03:59.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 27939 150\n [Camera]
17-03-17 18:03:59.288 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:03:59.678 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:03:59.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:03:59.678 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:03:59.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:03:59.678 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:03:59.678 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:03:59.678 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:03:59.678 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:03:59.678 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:03:59.678 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 18:03:59.868 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27939 776
17-03-17 18:04:00.018 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:04:00.078 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 18:04:00.078 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:04:00.078 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:04:00.078 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 18:04:00.078 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:04:00.078 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:04:00.088 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:04:00.088 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 18:04:00.088 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:04:00.098 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 18:04:00.208 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:04:00.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:04:00.208 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:04:00.208 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:04:00.208 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 18:04:00.208 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:04:00.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:04:00.218 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:04:00.218 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:04:00.218 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 18:04:00.398 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:04:00.398 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:04:00.398 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 27939 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-17 18:04:00.618 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 409 ms.
17-03-17 18:04:00.618 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 18:04:00.618 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:04:00.628 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 410 ms.
17-03-17 18:04:00.628 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:04:00.628 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:04:00.628 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:04:00.628 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 18:04:00.628 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 419 ms.
17-03-17 18:04:00.628 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 18:04:00.638 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-17 18:04:00.678 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 18:04:00.678 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 18:04:00.718 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 18:04:00.788 -07 000000610 INF: Enabling Skipping AutoFocus in the next 3 cycles.
17-03-17 18:04:00.788 -07 000000610 INF: Imaging Cycle 8: ScanTilesCommand Cycle 8 time end. Duration was 157709 ms.
17-03-17 18:04:00.788 -07 000000610 INF: =================== Cycle #8 ===================
17-03-17 18:04:00.788 -07 000000610 INF: ===================  ===================
17-03-17 18:04:00.788 -07 000000541 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 18:04:00.798 -07 000000459 INF: FPGA: Recv EXLED1ADCR 23
17-03-17 18:04:00.798 -07 000000541 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:04:00.798 -07 000000541 INF: GreenLED: Using Green data: Photodiode ADC 23 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.6 mW
17-03-17 18:04:00.798 -07 000000541 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 8, FrontChillerTemperature: 4.019446, FrontChillerHeatSinkTemperature: 0.42438, AmbientTemperature: 18.73443, FlowCellCompartmentTemperature: 21.99981, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.53786, GreenLEDSensorTemperature: 26.09482, PhotodiodePowerAdcGreen: 23, PhotodiodePowerMwGreen: 1.653493
17-03-17 18:04:00.798 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.