17-03-18 01:38:56.600 -07 000000610 INF: =================== Cycle #90 ===================
17-03-18 01:38:56.610 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 01:38:56.610 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-18 01:38:56.610 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:56.610 -07 000000430 INF: FPGA: Recv YRDPOS 153256
17-03-18 01:38:56.620 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:38:56.620 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:56.620 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 01:38:56.620 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 01:38:56.620 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 01:38:56.730 -07 000000512 INF: FPGA: Recv YMVTO 154379 878
17-03-18 01:38:56.730 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 108 ms to get response, and 118 ms overall
17-03-18 01:38:56.730 -07 000000610 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 01:38:56.730 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 878 steps (0.549 mm). Slippage = 0.001 mm (0.00%).
17-03-18 01:38:56.730 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 118 ms, distance = 0.549 mm, average velocity = 4.649 mm/sec
17-03-18 01:38:57.280 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:38:57.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:38:59.730 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:38:59.730 -07 000000512 INF: FPGA: Recv YRDPOS 154387
17-03-18 01:38:59.740 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:38:59.740 -07 000000610 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:38:59.760 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.003697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:38:59.760 -07 000000610 INF: Y Motor: Position error after settling = 8 encoder counts (0.004 mm), Delta during settling = 8 counts (0.004 mm)
17-03-18 01:38:59.760 -07 000000610 INF: Y Motor: Moved to 75.3843 after 3149 ms
17-03-18 01:38:59.760 -07 000000610 INF: =================== Cycle #90, Flow Cell Temp 60° ===================
17-03-18 01:38:59.760 -07 000000610 INF: =================== Cycle #90, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 01:38:59.980 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 01:38:59.980 -07 000000626 INF: FPGA: Recv TEC2EN 
17-03-18 01:38:59.990 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:38:59.990 -07 000000610 INF: =================== Cycle #90, Flow Cell Temp 60° ===================
17-03-18 01:38:59.990 -07 000000610 INF: =================== Cycle #90 ===================
17-03-18 01:38:59.990 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:38:59.990 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:39:00.020 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 01:39:00.020 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 01:39:00.020 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 01:39:00.320 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:39:00.340 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 01:39:00.340 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 01:39:00.390 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:39:00.410 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:39:00.410 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:39:00.510 -07 000000610 INF: =================== Cycle #90, Pumping Reagent PR2 (3) ===================
17-03-18 01:39:00.510 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 01:39:00.510 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:39:00.540 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 01:39:00.540 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 01:39:00.540 -07 000000610 INF: =================== Cycle #90, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:39:00.670 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 01:39:00.710 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:39:00.720 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 3.999021,
17-03-18 01:39:02.280 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:39:02.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1406, R2=1460, Total=2866. Warn if over 250 bubbles per interval.
17-03-18 01:39:03.840 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:39:03.870 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:39:04.290 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:39:04.320 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:39:04.740 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:39:04.770 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:39:04.770 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 01:39:04.770 -07 000000610 INF: =================== Cycle #90, Pumping Reagent PR2 (3) ===================
17-03-18 01:39:04.900 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:39:04.930 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:39:04.930 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:39:05.060 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:39:05.090 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:39:05.090 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:39:05.090 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:39:05.220 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:39:05.250 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:39:05.680 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:39:05.710 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:39:05.710 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:39:05.710 -07 000000610 INF: =================== Cycle #90 ===================
17-03-18 01:39:06.080 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 3.994908,
17-03-18 01:39:06.930 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:39:06.930 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 01:39:06.930 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:39:06.950 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:39:06.950 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 01:39:06.950 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 01:39:07.080 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:39:07.100 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 01:39:07.100 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 01:39:07.150 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:39:07.170 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 01:39:07.170 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:39:07.270 -07 000000610 INF: =================== Cycle #90, Pumping Reagent CMS (4) ===================
17-03-18 01:39:07.270 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 01:39:07.270 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:39:07.280 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 01:39:07.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1407, R2=1461, Total=2868. Warn if over 250 bubbles per interval.
17-03-18 01:39:07.300 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:39:07.300 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:39:07.300 -07 000000610 INF: =================== Cycle #90, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 01:39:07.430 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 01:39:07.470 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:39:08.910 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:39:08.940 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:39:09.360 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:39:09.390 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:39:09.390 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 01:39:09.390 -07 000000610 INF: =================== Cycle #90, Pumping Reagent CMS (4) ===================
17-03-18 01:39:09.520 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:39:09.550 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:39:09.550 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:39:09.680 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:39:09.710 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:39:09.710 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:39:09.710 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:39:09.840 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:39:09.870 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:39:10.300 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:39:10.330 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:39:10.330 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:39:10.330 -07 000000610 INF: =================== Cycle #90 ===================
17-03-18 01:39:11.440 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 3.960826,
17-03-18 01:39:11.550 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:39:11.550 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:39:11.550 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:39:11.570 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 01:39:11.570 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 01:39:11.570 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 01:39:11.720 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:39:11.740 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 01:39:11.740 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 01:39:11.790 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:39:11.810 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:39:11.810 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:39:11.910 -07 000000610 INF: =================== Cycle #90, Pumping Reagent PR2 (3) ===================
17-03-18 01:39:11.910 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 01:39:11.910 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:39:11.940 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:39:11.940 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:39:11.940 -07 000000610 INF: =================== Cycle #90, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:39:12.070 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 01:39:12.110 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:39:12.280 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:39:12.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1407, R2=1461, Total=2868. Warn if over 250 bubbles per interval.
17-03-18 01:39:12.980 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:39:13.010 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:39:13.010 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-18 01:39:13.010 -07 000000610 INF: =================== Cycle #90, Pumping Reagent PR2 (3) ===================
17-03-18 01:39:13.140 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:39:13.170 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:39:13.170 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:39:13.300 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:39:13.330 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:39:13.330 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:39:13.330 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:39:13.460 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:39:13.490 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:39:13.920 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:39:13.950 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:39:13.950 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:39:13.950 -07 000000610 INF: =================== Cycle #90 ===================
17-03-18 01:39:13.950 -07 000000444 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:39:13.950 -07 000000561 INF: WaitCommand(10000) start
17-03-18 01:39:13.950 -07 000000444 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 01:39:15.170 -07 000000444 INF: AsyncDelayTimer waited 1214ms
17-03-18 01:39:15.170 -07 000000444 INF: LanePump: Xmit /1?\r
17-03-18 01:39:15.200 -07 000000444 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:39:15.200 -07 000000444 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:39:15.330 -07 000000444 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 01:39:15.370 -07 000000444 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:39:16.800 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 3.978563,
17-03-18 01:39:16.900 -07 000000444 INF: LanePump: Xmit /1Q\r
17-03-18 01:39:16.930 -07 000000444 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:39:17.280 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:39:17.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1407, R2=1461, Total=2868. Warn if over 250 bubbles per interval.
17-03-18 01:39:17.350 -07 000000444 INF: LanePump: Xmit /1Q\r
17-03-18 01:39:17.380 -07 000000444 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:39:17.380 -07 000000444 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 01:39:17.380 -07 000000444 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:39:17.380 -07 000000444 INF: ===================  ===================
17-03-18 01:39:22.160 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 4.004458,
17-03-18 01:39:22.280 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:39:22.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1407, R2=1461, Total=2868. Warn if over 250 bubbles per interval.
17-03-18 01:39:23.960 -07 000000561 INF: WaitCommand(10000) end
17-03-18 01:39:23.960 -07 000000610 INF: =================== Cycle #90, Pumping Reagent PR2 (3) ===================
17-03-18 01:39:23.960 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 01:39:23.960 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:39:23.990 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 01:39:23.990 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 01:39:23.990 -07 000000610 INF: =================== Cycle #90, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:39:24.120 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 01:39:24.160 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:39:27.280 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:39:27.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1407, R2=1461, Total=2868. Warn if over 250 bubbles per interval.
17-03-18 01:39:27.520 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 3.996267,
17-03-18 01:39:30.290 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:39:30.320 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:39:30.740 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:39:30.770 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:39:31.190 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:39:31.220 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:39:31.640 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:39:31.670 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:39:32.090 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:39:32.120 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:39:32.120 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 01:39:32.120 -07 000000610 INF: =================== Cycle #90, Pumping Reagent PR2 (3) ===================
17-03-18 01:39:32.250 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:39:32.280 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 01:39:32.280 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 01:39:32.280 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:39:32.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1407, R2=1461, Total=2868. Warn if over 250 bubbles per interval.
17-03-18 01:39:32.410 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:39:32.440 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 01:39:32.440 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 01:39:32.440 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:39:32.570 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:39:32.600 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:39:32.880 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 4.009895,
17-03-18 01:39:33.030 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:39:33.060 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:39:33.060 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:39:33.060 -07 000000610 INF: =================== Cycle #90 ===================
17-03-18 01:39:34.280 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:39:34.280 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 01:39:34.280 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:39:34.300 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:39:34.300 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 01:39:34.300 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 01:39:34.510 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:39:34.530 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 01:39:34.530 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 01:39:34.580 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:39:34.600 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 01:39:34.600 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:39:34.700 -07 000000610 INF: =================== Cycle #90, Pumping Reagent IMT (1) ===================
17-03-18 01:39:34.700 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 01:39:34.700 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:39:34.740 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 01:39:34.740 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 01:39:34.740 -07 000000610 INF: =================== Cycle #90, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 01:39:34.870 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 01:39:34.910 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:39:36.350 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:39:36.380 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:39:36.800 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:39:36.830 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:39:36.830 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 01:39:36.830 -07 000000610 INF: =================== Cycle #90, Pumping Reagent IMT (1) ===================
17-03-18 01:39:36.960 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:39:36.990 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 01:39:36.990 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 01:39:37.120 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:39:37.150 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 01:39:37.150 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 01:39:37.150 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:39:37.280 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:39:37.280 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:39:37.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1407, R2=1461, Total=2868. Warn if over 250 bubbles per interval.
17-03-18 01:39:37.310 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:39:37.740 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:39:37.770 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:39:37.770 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:39:37.770 -07 000000610 INF: =================== Cycle #90 ===================
17-03-18 01:39:38.240 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 3.999021,
17-03-18 01:39:38.990 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:39:38.990 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:39:38.990 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:39:39.010 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 01:39:39.010 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 01:39:39.010 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 01:39:39.240 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:39:39.260 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 01:39:39.260 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 01:39:39.310 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:39:39.330 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:39:39.330 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:39:39.430 -07 000000610 INF: =================== Cycle #90, Pumping Reagent PR2 (3) ===================
17-03-18 01:39:39.430 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 01:39:39.430 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:39:39.460 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 01:39:39.460 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 01:39:39.460 -07 000000610 INF: =================== Cycle #90, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:39:39.590 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 01:39:39.630 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:39:40.500 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:39:40.530 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:39:40.530 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 01:39:40.530 -07 000000610 INF: =================== Cycle #90, Pumping Reagent PR2 (3) ===================
17-03-18 01:39:40.660 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:39:40.690 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 01:39:40.690 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 01:39:40.820 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:39:40.850 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 01:39:40.850 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 01:39:40.850 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:39:40.980 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:39:41.010 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:39:41.440 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:39:41.470 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:39:41.470 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:39:41.470 -07 000000610 INF: =================== Cycle #90 ===================
17-03-18 01:39:41.470 -07 000000610 INF: =================== Cycle #90, Flow Cell Temp 65° ===================
17-03-18 01:39:41.470 -07 000000610 INF: =================== Cycle #90, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 01:39:41.470 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 01:39:41.470 -07 000000626 INF: FPGA: Recv TEC2TEMP 
17-03-18 01:39:41.480 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:39:41.480 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 01:39:41.480 -07 000000501 INF: FPGA: Recv TEC2EN 
17-03-18 01:39:41.490 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:39:41.490 -07 000000610 INF: =================== Cycle #90, Flow Cell Temp 65° ===================
17-03-18 01:39:41.490 -07 000000610 INF: =================== Cycle #90 ===================
17-03-18 01:39:41.490 -07 000000610 INF: WaitCommand(30000) start
17-03-18 01:39:42.280 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:39:42.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1407, R2=1461, Total=2868. Warn if over 250 bubbles per interval.
17-03-18 01:39:43.600 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 4.000345,
17-03-18 01:39:47.280 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:39:47.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1407, R2=1461, Total=2868. Warn if over 250 bubbles per interval.
17-03-18 01:39:48.960 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 4.008536,
17-03-18 01:39:52.280 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:39:52.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1407, R2=1461, Total=2868. Warn if over 250 bubbles per interval.
17-03-18 01:39:54.320 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 3.971733,
17-03-18 01:39:57.280 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:39:57.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1407, R2=1461, Total=2868. Warn if over 250 bubbles per interval.
17-03-18 01:39:59.680 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 3.985358,
17-03-18 01:40:02.280 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:40:02.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1407, R2=1461, Total=2868. Warn if over 250 bubbles per interval.
17-03-18 01:40:05.040 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 4.023489,
17-03-18 01:40:07.280 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:40:07.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1407, R2=1461, Total=2868. Warn if over 250 bubbles per interval.
17-03-18 01:40:10.400 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 4.015368,
17-03-18 01:40:11.500 -07 000000610 INF: WaitCommand(30000) end
17-03-18 01:40:11.500 -07 000000610 INF: =================== Cycle #90, Pumping Reagent PR2 (3) ===================
17-03-18 01:40:11.500 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 01:40:11.600 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:40:11.630 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 01:40:11.630 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 01:40:11.630 -07 000000610 INF: =================== Cycle #90, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:40:11.760 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 01:40:11.800 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:40:12.280 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:40:12.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1407, R2=1461, Total=2868. Warn if over 250 bubbles per interval.
17-03-18 01:40:12.340 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:40:12.370 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:40:12.370 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-18 01:40:12.370 -07 000000610 INF: =================== Cycle #90, Pumping Reagent PR2 (3) ===================
17-03-18 01:40:12.500 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:40:12.530 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 01:40:12.530 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 01:40:12.660 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:40:12.690 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 01:40:12.690 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 01:40:12.690 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:40:12.820 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:40:12.850 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:40:13.280 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:40:13.310 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:40:13.310 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:40:13.310 -07 000000610 INF: =================== Cycle #90 ===================
17-03-18 01:40:13.310 -07 000000591 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:40:13.310 -07 000000501 INF: WaitCommand(30000) start
17-03-18 01:40:13.310 -07 000000591 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 01:40:14.530 -07 000000591 INF: AsyncDelayTimer waited 1215ms
17-03-18 01:40:14.530 -07 000000591 INF: LanePump: Xmit /1?\r
17-03-18 01:40:14.560 -07 000000591 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 01:40:14.560 -07 000000591 INF: LanePump: Current Position of Pump is: 1920
17-03-18 01:40:14.690 -07 000000591 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 01:40:14.730 -07 000000591 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:40:15.760 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 4.008536,
17-03-18 01:40:17.070 -07 000000591 INF: LanePump: Xmit /1Q\r
17-03-18 01:40:17.100 -07 000000591 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:40:17.280 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:40:17.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1407, R2=1461, Total=2868. Warn if over 250 bubbles per interval.
17-03-18 01:40:17.520 -07 000000591 INF: LanePump: Xmit /1Q\r
17-03-18 01:40:17.550 -07 000000591 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:40:17.550 -07 000000591 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 01:40:17.550 -07 000000591 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:40:17.550 -07 000000591 INF: ===================  ===================
17-03-18 01:40:21.120 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 3.981281,
17-03-18 01:40:22.280 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:40:22.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1407, R2=1461, Total=2868. Warn if over 250 bubbles per interval.
17-03-18 01:40:26.480 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 3.96762,
17-03-18 01:40:27.280 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:40:27.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1407, R2=1461, Total=2868. Warn if over 250 bubbles per interval.
17-03-18 01:40:31.840 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 4.005817,
17-03-18 01:40:32.280 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:40:32.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1407, R2=1461, Total=2868. Warn if over 250 bubbles per interval.
17-03-18 01:40:37.200 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 4.026244,
17-03-18 01:40:37.280 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:40:37.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1407, R2=1461, Total=2868. Warn if over 250 bubbles per interval.
17-03-18 01:40:42.280 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:40:42.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1407, R2=1461, Total=2868. Warn if over 250 bubbles per interval.
17-03-18 01:40:42.560 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 4.004458,
17-03-18 01:40:43.320 -07 000000501 INF: WaitCommand(30000) end
17-03-18 01:40:43.320 -07 000000610 INF: =================== Cycle #90, Flow Cell Temp 22° ===================
17-03-18 01:40:43.320 -07 000000610 INF: =================== Cycle #90, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 01:40:43.320 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 01:40:43.330 -07 000000467 INF: FPGA: Recv TEC2TEMP 
17-03-18 01:40:43.330 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:40:43.330 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 01:40:43.330 -07 000000590 INF: FPGA: Recv TEC2EN 
17-03-18 01:40:43.340 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:40:43.340 -07 000000610 INF: =================== Cycle #90, Flow Cell Temp 22° ===================
17-03-18 01:40:43.340 -07 000000610 INF: =================== Cycle #90 ===================
17-03-18 01:40:43.340 -07 000000610 INF: =================== Cycle #90, Pumping Reagent PR2 (3) ===================
17-03-18 01:40:43.340 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 01:40:43.340 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:40:43.370 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 01:40:43.370 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 01:40:43.370 -07 000000610 INF: =================== Cycle #90, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:40:43.500 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 01:40:43.540 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:40:46.670 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:40:46.700 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:40:47.120 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:40:47.150 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:40:47.280 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 01:40:47.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1461, Total=2869. Warn if over 250 bubbles per interval.
17-03-18 01:40:47.570 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:40:47.600 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:40:47.600 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 01:40:47.600 -07 000000610 INF: =================== Cycle #90, Pumping Reagent PR2 (3) ===================
17-03-18 01:40:47.730 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:40:47.760 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:40:47.760 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:40:47.890 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:40:47.920 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:40:47.920 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:40:47.920 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:40:47.920 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 3.99219,
17-03-18 01:40:48.050 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:40:48.080 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:40:48.510 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:40:48.540 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:40:48.540 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:40:48.540 -07 000000610 INF: =================== Cycle #90 ===================
17-03-18 01:40:49.760 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:40:49.760 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 01:40:49.760 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:40:49.780 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:40:49.780 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 01:40:49.780 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 01:40:49.930 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:40:49.950 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 01:40:49.950 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 01:40:50.000 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:40:50.020 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 01:40:50.020 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:40:50.120 -07 000000610 INF: =================== Cycle #90, Pumping Reagent USM (2) ===================
17-03-18 01:40:50.120 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 01:40:50.120 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:40:50.150 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:40:50.150 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:40:50.150 -07 000000610 INF: =================== Cycle #90, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 01:40:50.280 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 01:40:50.320 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:40:51.760 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:40:51.790 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:40:52.210 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:40:52.240 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:40:52.240 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-18 01:40:52.240 -07 000000610 INF: =================== Cycle #90, Pumping Reagent USM (2) ===================
17-03-18 01:40:52.280 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 01:40:52.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:40:52.370 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:40:52.400 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:40:52.400 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:40:52.530 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:40:52.560 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:40:52.560 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:40:52.560 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:40:52.690 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:40:52.720 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:40:53.150 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:40:53.180 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:40:53.180 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:40:53.180 -07 000000610 INF: =================== Cycle #90 ===================
17-03-18 01:40:53.280 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 3.981281,
17-03-18 01:40:54.400 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:40:54.400 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:40:54.400 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:40:54.420 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 01:40:54.420 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 01:40:54.420 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 01:40:54.570 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:40:54.590 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 01:40:54.590 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 01:40:54.640 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:40:54.660 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:40:54.660 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:40:54.760 -07 000000610 INF: =================== Cycle #90, Pumping Reagent PR2 (3) ===================
17-03-18 01:40:54.760 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 01:40:54.760 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:40:54.790 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:40:54.790 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:40:54.790 -07 000000610 INF: =================== Cycle #90, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:40:54.920 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 01:40:54.960 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:40:55.830 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:40:55.860 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:40:55.860 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 01:40:55.860 -07 000000610 INF: =================== Cycle #90, Pumping Reagent PR2 (3) ===================
17-03-18 01:40:55.990 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:40:56.020 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:40:56.020 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:40:56.150 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:40:56.180 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:40:56.180 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:40:56.180 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:40:56.310 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:40:56.340 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:40:56.770 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:40:56.800 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:40:56.800 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:40:56.800 -07 000000610 INF: =================== Cycle #90 ===================
17-03-18 01:40:56.800 -07 000000626 INF: WaitCommand(10000) start
17-03-18 01:40:56.800 -07 000000591 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:40:56.800 -07 000000591 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 01:40:57.280 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:40:57.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:40:58.020 -07 000000591 INF: AsyncDelayTimer waited 1216ms
17-03-18 01:40:58.020 -07 000000591 INF: LanePump: Xmit /1?\r
17-03-18 01:40:58.050 -07 000000591 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:40:58.050 -07 000000591 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:40:58.180 -07 000000591 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 01:40:58.220 -07 000000591 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:40:58.640 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 3.996267,
17-03-18 01:40:59.750 -07 000000591 INF: LanePump: Xmit /1Q\r
17-03-18 01:40:59.780 -07 000000591 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:41:00.200 -07 000000591 INF: LanePump: Xmit /1Q\r
17-03-18 01:41:00.230 -07 000000591 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:41:00.230 -07 000000591 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 01:41:00.230 -07 000000591 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:41:00.230 -07 000000591 INF: ===================  ===================
17-03-18 01:41:02.280 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:41:02.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:41:04.000 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 3.997626,
17-03-18 01:41:06.810 -07 000000626 INF: WaitCommand(10000) end
17-03-18 01:41:06.810 -07 000000610 INF: =================== Cycle #90, Imaging ===================
17-03-18 01:41:06.810 -07 000000610 INF: Imaging Cycle 90: ScanTilesCommand Cycle 90 time start.
17-03-18 01:41:06.810 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 01:41:06.810 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:41:06.840 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:41:06.840 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 01:41:06.840 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 01:41:07.140 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:41:07.160 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 01:41:07.160 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 01:41:07.210 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:41:07.230 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 01:41:07.230 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:41:07.230 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:41:07.230 -07 000000438 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 01:41:07.230 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:41:07.230 -07 000000438 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 01:41:07.230 -07 000000462 INF: FPGA: Recv EXLED1ON 
17-03-18 01:41:07.240 -07 000000438 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:41:07.240 -07 000000438 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 01:41:07.240 -07 000000461 INF: FPGA: Recv EXLED1ADCR 23165
17-03-18 01:41:07.250 -07 000000438 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:07.250 -07 000000438 INF: RedLED: Using Red data: Photodiode ADC 23165 --> 7.4 mW (old method), or 205.3 mW (new method). Difference = 197.9 mW
17-03-18 01:41:07.250 -07 000000438 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 01:41:07.250 -07 000000590 INF: FPGA: Recv EXLED1OFF 
17-03-18 01:41:07.260 -07 000000438 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:07.260 -07 000000438 INF: RedLED: LED was on for 20 ms
17-03-18 01:41:07.260 -07 000000438 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-18 01:41:07.260 -07 000000438 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 01:41:07.260 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:41:07.260 -07 000000438 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 01:41:07.260 -07 000000462 INF: FPGA: Recv EXLED2ON 
17-03-18 01:41:07.270 -07 000000438 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:41:07.270 -07 000000438 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 01:41:07.270 -07 000000424 INF: FPGA: Recv EXLED1ADCR 2103
17-03-18 01:41:07.280 -07 000000438 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:07.280 -07 000000438 INF: GreenLED: Using Green data: Photodiode ADC 2103 --> 0.9 mW (old method), or 182.7 mW (new method). Difference = 181.8 mW
17-03-18 01:41:07.280 -07 000000438 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 01:41:07.280 -07 000000461 INF: FPGA: Recv EXLED2OFF 
17-03-18 01:41:07.280 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:41:07.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:41:07.290 -07 000000438 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:07.290 -07 000000438 INF: GreenLED: LED was on for 19 ms
17-03-18 01:41:07.290 -07 000000438 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 01:41:07.290 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 01:41:07.290 -07 000000590 INF: FPGA: Recv EMCUR 
17-03-18 01:41:07.300 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:41:07.300 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 01:41:07.800 -07 000000424 INF: FPGA: Recv EMOUT
17-03-18 01:41:07.800 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 01:41:07.800 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 01:41:07.800 -07 000000626 INF: FPGA: Recv EMCUR 
17-03-18 01:41:07.810 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:41:07.810 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:41:07.810 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38427734375, Z-Position -0.126535565152218. ------
17-03-18 01:41:07.810 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:41:07.810 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17873 mm
17-03-18 01:41:07.810 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:41:07.810 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:41:07.810 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 01:41:07.810 -07 000000424 INF: Y Motor: Moving to 59.9126 mm, started at 75.3843 mm, delta = -15.4717 mm
17-03-18 01:41:07.810 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 39044, sync = True, waitForSettling = False)
17-03-18 01:41:07.810 -07 000000501 INF: Z Motor: Moving to -0.178732 mm, started at -0.126536 mm, distance = -52.20 um
17-03-18 01:41:07.820 -07 000000501 INF: FPGA: Xmit ZDACW 39044\n [Z Motor]
17-03-18 01:41:07.820 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:41:07.820 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:41:07.830 -07 000000501 INF: FPGA: 'ZDACW 39044' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:07.830 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:41:07.830 -07 000000590 INF: FPGA: Recv ZDACR 39044
17-03-18 01:41:07.840 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:41:07.840 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:07.840 -07 000000501 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 01:41:07.840 -07 000000437 INF: FPGA: Recv YRDPOS 154387
17-03-18 01:41:07.850 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 01:41:07.850 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:41:07.850 -07 000000424 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:07.850 -07 000000424 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 01:41:07.850 -07 000000424 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 01:41:07.860 -07 000000424 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 01:41:08.050 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:41:08.050 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-18 01:41:09.360 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 4.02213,
17-03-18 01:41:09.540 -07 000000502 INF: FPGA: Recv YMVTO 122703 24783
17-03-18 01:41:09.540 -07 000000424 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1695 ms overall
17-03-18 01:41:09.540 -07 000000424 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 01:41:09.540 -07 000000424 INF: Y Motor: To move from 75.384 to 59.913 (-15.472 mm) should take 24755 steps, but required 24783 steps (15.489 mm). Slippage = 0.018 mm (0.00%).
17-03-18 01:41:09.540 -07 000000424 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1695 ms, distance = 15.472 mm, average velocity = 9.128 mm/sec
17-03-18 01:41:12.280 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:41:12.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:41:12.390 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:12.390 -07 000000437 INF: FPGA: Recv YRDPOS 122696
17-03-18 01:41:12.400 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:12.400 -07 000000424 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:12.420 -07 000000424 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:41:12.420 -07 000000424 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 01:41:12.420 -07 000000424 INF: Y Motor: Moved to 59.9102 after 4608 ms
17-03-18 01:41:12.430 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178732 mm (DAC = 39044)
17-03-18 01:41:12.430 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:12.430 -07 000000501 INF: FPGA: Recv ZSGSRD 37112
17-03-18 01:41:12.440 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:41:12.440 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:12.440 -07 000000462 INF: FPGA: Recv ZSGSRD 37113
17-03-18 01:41:12.450 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:12.450 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:12.450 -07 000000462 INF: FPGA: Recv ZSGSRD 37109
17-03-18 01:41:12.460 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:12.460 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:12.460 -07 000000487 INF: FPGA: Recv ZSGSRD 37111
17-03-18 01:41:12.470 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:12.470 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:12.470 -07 000000462 INF: FPGA: Recv ZSGSRD 37113
17-03-18 01:41:12.480 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:12.480 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:12.480 -07 000000437 INF: FPGA: Recv ZSGSRD 37112
17-03-18 01:41:12.490 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:12.490 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:12.490 -07 000000502 INF: FPGA: Recv ZSGSRD 37111
17-03-18 01:41:12.500 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:12.500 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:12.500 -07 000000502 INF: FPGA: Recv ZSGSRD 37111
17-03-18 01:41:12.510 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:12.510 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:12.510 -07 000000502 INF: FPGA: Recv ZSGSRD 37110
17-03-18 01:41:12.520 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:12.520 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:12.520 -07 000000487 INF: FPGA: Recv ZSGSRD 37119
17-03-18 01:41:12.530 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:12.530 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:41:12.530 -07 000000487 INF: FPGA: Recv ZPIEZORD 33343
17-03-18 01:41:12.540 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:12.540 -07 000000438 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.958 V. Piezo Error = -8.3 V.
17-03-18 01:41:12.540 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.7 um, Read 10 ADC samples: Avg = 37112 (-177.8 uncal um), Error = 0.9 uncal um, Median = 37112 (-177.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 37109 (-177.8 uncal um), Max = 37119 (-177.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:41:12.540 -07 000000438 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37112, posNoise = 7, negNoise = 3
17-03-18 01:41:12.540 -07 000000438 INF: Z Motor: After move to -0.178732, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:41:12.540 -07 000000438 INF: Z Motor: Settle wait time = 4611 ms, measure time = 109 ms (allowed 150 ms), total time = 4720 ms
17-03-18 01:41:12.540 -07 000000438 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:41:12.590 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4775 ms
17-03-18 01:41:12.590 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:41:12.590 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:41:12.590 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:41:12.590 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:41:12.590 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:41:12.590 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:41:12.590 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:41:12.600 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:41:12.600 -07 000000590 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 01:41:12.620 -07 000000590 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 01:41:12.620 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:41:12.620 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 01:41:12.620 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:41:12.640 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:41:12.640 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 41 ms.
17-03-18 01:41:12.640 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:41:12.680 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:41:12.980 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:41:12.980 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:41:12.990 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:41:12.990 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 01:41:13.020 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:41:13.020 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 01:41:13.020 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-18 01:41:13.110 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 01:41:13.110 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:13.110 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:41:13.110 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 01:41:13.220 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:41:13.220 -07 000000424 INF: Image SNR check: start
17-03-18 01:41:13.220 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:41:13.230 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:41:13.230 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:41:13.230 -07 000000424 INF: Image SNR check: pass  [peak (Max-Min)=152.18]
17-03-18 01:41:13.230 -07 000000424 INF: Autofocus start
17-03-18 01:41:13.230 -07 000000424 INF: MeasureProfile start
17-03-18 01:41:13.250 -07 000000424 INF: MeasureProfile done
17-03-18 01:41:13.250 -07 000000424 INF: X=48  Z correction [um]=0.1739867
17-03-18 01:41:13.250 -07 000000424 INF: Autofocus finished
17-03-18 01:41:13.430 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:41:13.430 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 01:41:13.430 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.178738713016168. ----------
17-03-18 01:41:13.440 -07 000000610 INF: Cycle	90	Tile	1	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:41:13.440 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37594, sync = True, waitForSettling = True)
17-03-18 01:41:13.440 -07 000000610 INF: Z Motor: Moving to -0.172094 mm, started at -0.178739 mm, distance = 6.64 um
17-03-18 01:41:13.440 -07 000000610 INF: FPGA: Xmit ZDACW 37594\n [Z Motor]
17-03-18 01:41:13.440 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:41:13.450 -07 000000610 INF: FPGA: 'ZDACW 37594' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:41:13.450 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:41:13.450 -07 000000502 INF: FPGA: Recv ZDACR 37594
17-03-18 01:41:13.460 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:13.460 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:41:13.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:13.610 -07 000000501 INF: FPGA: Recv ZSGSRD 36080
17-03-18 01:41:13.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:41:13.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:13.630 -07 000000467 INF: FPGA: Recv ZSGSRD 36077
17-03-18 01:41:13.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:41:13.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:13.640 -07 000000502 INF: FPGA: Recv ZSGSRD 36078
17-03-18 01:41:13.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:13.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:13.650 -07 000000487 INF: FPGA: Recv ZSGSRD 36078
17-03-18 01:41:13.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:13.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:13.660 -07 000000501 INF: FPGA: Recv ZSGSRD 36086
17-03-18 01:41:13.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:13.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:13.670 -07 000000502 INF: FPGA: Recv ZSGSRD 36075
17-03-18 01:41:13.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:13.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:13.680 -07 000000501 INF: FPGA: Recv ZSGSRD 36079
17-03-18 01:41:13.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:13.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:13.690 -07 000000502 INF: FPGA: Recv ZSGSRD 36084
17-03-18 01:41:13.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:13.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:13.700 -07 000000487 INF: FPGA: Recv ZSGSRD 36081
17-03-18 01:41:13.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:13.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:13.710 -07 000000502 INF: FPGA: Recv ZSGSRD 36078
17-03-18 01:41:13.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:13.720 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:41:13.720 -07 000000437 INF: FPGA: Recv ZPIEZORD 31987
17-03-18 01:41:13.730 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:13.730 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.736 V. Piezo Error = -9.0 V.
17-03-18 01:41:13.730 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36080 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36078 (-171.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36075 (-171.2 uncal um), Max = 36086 (-171.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:41:13.730 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36080, posNoise = 6, negNoise = 5
17-03-18 01:41:13.730 -07 000000610 INF: Z Motor: After move to -0.172094, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:41:13.730 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-18 01:41:13.730 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:41:13.730 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:41:13.730 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:41:13.730 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:41:13.730 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:41:13.730 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:41:13.730 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:41:13.730 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:41:13.730 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:41:13.730 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 01:41:13.730 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:41:13.730 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:41:13.730 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:41:13.730 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:41:13.750 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:41:13.750 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 01:41:13.750 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 01:41:13.750 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:41:13.760 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:41:13.760 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:41:13.770 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:41:13.770 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 41 ms.
17-03-18 01:41:13.770 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37771 150\n [Camera]
17-03-18 01:41:13.970 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:41:14.360 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:41:14.360 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:41:14.360 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:41:14.370 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:41:14.370 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:41:14.370 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:41:14.370 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:41:14.370 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:41:14.370 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:41:14.370 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:41:14.560 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37771 776
17-03-18 01:41:14.710 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 01:41:14.720 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 4.001704,
17-03-18 01:41:14.750 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 01:41:14.750 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 01:41:14.750 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:14.760 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:41:14.760 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 01:41:14.760 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 01:41:14.760 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:14.760 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:41:14.760 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:41:14.760 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:41:14.900 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:41:14.900 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:41:14.900 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:41:14.900 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:41:14.900 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 01:41:14.900 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:41:14.900 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:41:14.900 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:41:14.900 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:41:14.900 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 01:41:15.090 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:41:15.090 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:41:15.090 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37771 150' command took 2 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-18 01:41:15.090 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.172128
17-03-18 01:41:15.090 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17213 mm
17-03-18 01:41:15.090 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:41:15.090 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 01:41:15.090 -07 000000590 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 01:41:15.090 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:15.090 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 37601, sync = True, waitForSettling = False)
17-03-18 01:41:15.090 -07 000000608 INF: Z Motor: Moving to -0.172126 mm, started at -0.172109 mm, distance = -0.02 um
17-03-18 01:41:15.090 -07 000000437 INF: FPGA: Recv YRDPOS 122696
17-03-18 01:41:15.100 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:41:15.100 -07 000000590 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:15.100 -07 000000590 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:41:15.100 -07 000000590 INF: Y Motor: Moving 1332 steps2
17-03-18 01:41:15.100 -07 000000608 INF: FPGA: Xmit ZDACW 37601\n [Z Motor]
17-03-18 01:41:15.100 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:41:15.110 -07 000000608 INF: FPGA: 'ZDACW 37601' command took 1 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:41:15.110 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:41:15.120 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:41:15.120 -07 000000462 INF: FPGA: Recv ZDACR 37601
17-03-18 01:41:15.130 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:41:15.130 -07 000000608 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 01:41:15.300 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 01:41:15.300 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:41:15.300 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:15.300 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 01:41:15.300 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 01:41:15.300 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:15.310 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 01:41:15.310 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 01:41:15.310 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 10 ms.
17-03-18 01:41:15.320 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-18 01:41:15.480 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 01:41:15.480 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 01:41:15.520 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:15.520 -07 000000608 INF: FPGA: Recv YRDPOS 124380
17-03-18 01:41:15.530 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:41:15.530 -07 000000590 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:15.530 -07 000000590 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 01:41:15.530 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.832 mm, average velocity = 2.145 mm/sec
17-03-18 01:41:16.480 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:16.480 -07 000000467 INF: FPGA: Recv YRDPOS 124380
17-03-18 01:41:16.490 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:41:16.490 -07 000000590 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:16.510 -07 000000590 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:41:16.510 -07 000000590 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:41:16.510 -07 000000590 INF: Y Motor: Moved to 60.7324 after 1422 ms (table move)
17-03-18 01:41:16.520 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172126 mm (DAC = 37601)
17-03-18 01:41:16.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:16.520 -07 000000487 INF: FPGA: Recv ZSGSRD 36090
17-03-18 01:41:16.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:41:16.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:16.530 -07 000000437 INF: FPGA: Recv ZSGSRD 36086
17-03-18 01:41:16.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:16.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:16.540 -07 000000501 INF: FPGA: Recv ZSGSRD 36084
17-03-18 01:41:16.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:16.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:16.550 -07 000000437 INF: FPGA: Recv ZSGSRD 36085
17-03-18 01:41:16.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:16.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:16.560 -07 000000501 INF: FPGA: Recv ZSGSRD 36088
17-03-18 01:41:16.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:16.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:16.570 -07 000000437 INF: FPGA: Recv ZSGSRD 36085
17-03-18 01:41:16.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:16.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:16.580 -07 000000487 INF: FPGA: Recv ZSGSRD 36083
17-03-18 01:41:16.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:16.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:16.590 -07 000000438 INF: FPGA: Recv ZSGSRD 36076
17-03-18 01:41:16.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:16.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:16.600 -07 000000487 INF: FPGA: Recv ZSGSRD 36084
17-03-18 01:41:16.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:16.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:16.610 -07 000000437 INF: FPGA: Recv ZSGSRD 36088
17-03-18 01:41:16.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:41:16.620 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:41:16.620 -07 000000501 INF: FPGA: Recv ZPIEZORD 32018
17-03-18 01:41:16.630 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:16.630 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.738 V. Piezo Error = -9.0 V.
17-03-18 01:41:16.630 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36085 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36085 (-171.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36076 (-171.2 uncal um), Max = 36090 (-171.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:41:16.630 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36085, posNoise = 5, negNoise = 9
17-03-18 01:41:16.630 -07 000000610 INF: Z Motor: After move to -0.172126, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:41:16.630 -07 000000610 INF: Z Motor: Settle wait time = 1426 ms, measure time = 107 ms (allowed 150 ms), total time = 1533 ms
17-03-18 01:41:16.630 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 01:41:16.680 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-18 01:41:16.680 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:41:16.680 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.172141047146579. ----------
17-03-18 01:41:16.680 -07 000000610 INF: Cycle	90	Tile	2	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:41:16.680 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37425, sync = True, waitForSettling = True)
17-03-18 01:41:16.680 -07 000000610 INF: Z Motor: Moving to -0.171321 mm, started at -0.172141 mm, distance = 0.82 um
17-03-18 01:41:16.680 -07 000000610 INF: FPGA: Xmit ZDACW 37425\n [Z Motor]
17-03-18 01:41:16.680 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:41:16.690 -07 000000610 INF: FPGA: 'ZDACW 37425' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:41:16.690 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:41:16.690 -07 000000591 INF: FPGA: Recv ZDACR 37425
17-03-18 01:41:16.700 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:16.700 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:41:16.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:16.850 -07 000000462 INF: FPGA: Recv ZSGSRD 35961
17-03-18 01:41:16.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:41:16.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:16.860 -07 000000487 INF: FPGA: Recv ZSGSRD 35966
17-03-18 01:41:16.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:16.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:16.870 -07 000000438 INF: FPGA: Recv ZSGSRD 35957
17-03-18 01:41:16.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:16.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:16.880 -07 000000626 INF: FPGA: Recv ZSGSRD 35957
17-03-18 01:41:16.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:16.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:16.890 -07 000000502 INF: FPGA: Recv ZSGSRD 35965
17-03-18 01:41:16.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:16.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:16.900 -07 000000438 INF: FPGA: Recv ZSGSRD 35953
17-03-18 01:41:16.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:16.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:16.910 -07 000000502 INF: FPGA: Recv ZSGSRD 35960
17-03-18 01:41:16.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:16.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:16.920 -07 000000438 INF: FPGA: Recv ZSGSRD 35958
17-03-18 01:41:16.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:16.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:16.930 -07 000000626 INF: FPGA: Recv ZSGSRD 35957
17-03-18 01:41:16.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:16.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:16.940 -07 000000437 INF: FPGA: Recv ZSGSRD 35964
17-03-18 01:41:16.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:16.950 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:41:16.950 -07 000000438 INF: FPGA: Recv ZPIEZORD 31820
17-03-18 01:41:16.960 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:16.960 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.711 V. Piezo Error = -9.1 V.
17-03-18 01:41:16.960 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.3 um, Read 10 ADC samples: Avg = 35960 (-170.5 uncal um), Error = 0.9 uncal um, Median = 35959 (-170.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35953 (-170.4 uncal um), Max = 35966 (-170.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:41:16.960 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35960, posNoise = 6, negNoise = 7
17-03-18 01:41:16.960 -07 000000610 INF: Z Motor: After move to -0.171321, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:41:16.960 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 01:41:16.960 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:41:16.960 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:41:16.960 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:41:16.960 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:41:16.960 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:41:16.960 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:41:16.960 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:41:16.960 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:41:16.960 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:41:16.960 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:41:16.960 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:41:16.960 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:41:16.960 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:41:16.960 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:41:16.960 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:41:16.960 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:41:16.980 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 01:41:16.980 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 01:41:16.980 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:41:16.980 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:41:16.980 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37601 150\n [Camera]
17-03-18 01:41:17.180 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:41:17.280 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:41:17.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:41:17.570 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:41:17.570 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:41:17.580 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:41:17.580 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:41:17.580 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 01:41:17.580 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:41:17.580 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:41:17.580 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:41:17.580 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:41:17.580 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 01:41:17.770 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37601 776
17-03-18 01:41:17.920 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:41:17.970 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:41:17.970 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:41:17.970 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:17.980 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:41:17.980 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:41:17.980 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:17.980 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:41:17.980 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:41:17.980 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:41:17.990 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:41:18.110 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:41:18.110 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:41:18.110 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:41:18.110 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:41:18.110 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 01:41:18.110 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:41:18.110 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:41:18.110 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:41:18.110 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:41:18.110 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 01:41:18.300 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:41:18.300 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:41:18.300 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37601 150' command took 2 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-18 01:41:18.300 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.171906
17-03-18 01:41:18.300 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17191 mm
17-03-18 01:41:18.300 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:41:18.300 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 01:41:18.300 -07 000000626 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 01:41:18.300 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:18.300 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 37553, sync = True, waitForSettling = False)
17-03-18 01:41:18.300 -07 000000487 INF: Z Motor: Moving to -0.171907 mm, started at -0.171338 mm, distance = -0.57 um
17-03-18 01:41:18.310 -07 000000487 INF: FPGA: Xmit ZDACW 37553\n [Z Motor]
17-03-18 01:41:18.310 -07 000000437 INF: FPGA: Recv YRDPOS 124381
17-03-18 01:41:18.310 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-18 01:41:18.310 -07 000000626 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:18.310 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:41:18.310 -07 000000626 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:41:18.310 -07 000000626 INF: Y Motor: Moving 1344 steps-21
17-03-18 01:41:18.320 -07 000000487 INF: FPGA: 'ZDACW 37553' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:41:18.320 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:41:18.330 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:41:18.330 -07 000000590 INF: FPGA: Recv ZDACR 37553
17-03-18 01:41:18.340 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:41:18.340 -07 000000487 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-18 01:41:18.510 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 01:41:18.510 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:41:18.510 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:18.520 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:41:18.520 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:41:18.520 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:18.520 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:41:18.520 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 01:41:18.520 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:41:18.530 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:41:18.690 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 01:41:18.690 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-18 01:41:18.740 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:18.740 -07 000000502 INF: FPGA: Recv YRDPOS 126081
17-03-18 01:41:18.750 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:41:18.750 -07 000000626 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:18.750 -07 000000626 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 01:41:18.750 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.840 mm, average velocity = 2.205 mm/sec
17-03-18 01:41:19.700 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:19.700 -07 000000438 INF: FPGA: Recv YRDPOS 126081
17-03-18 01:41:19.710 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:41:19.710 -07 000000626 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:19.730 -07 000000626 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:41:19.730 -07 000000626 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:41:19.730 -07 000000626 INF: Y Motor: Moved to 61.5630 after 1430 ms (table move)
17-03-18 01:41:19.730 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171907 mm (DAC = 37553)
17-03-18 01:41:19.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:19.740 -07 000000461 INF: FPGA: Recv ZSGSRD 36050
17-03-18 01:41:19.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:41:19.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:19.750 -07 000000438 INF: FPGA: Recv ZSGSRD 36047
17-03-18 01:41:19.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:19.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:19.770 -07 000000467 INF: FPGA: Recv ZSGSRD 36054
17-03-18 01:41:19.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:41:19.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:19.780 -07 000000438 INF: FPGA: Recv ZSGSRD 36049
17-03-18 01:41:19.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:19.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:19.790 -07 000000467 INF: FPGA: Recv ZSGSRD 36051
17-03-18 01:41:19.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:19.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:19.800 -07 000000626 INF: FPGA: Recv ZSGSRD 36047
17-03-18 01:41:19.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:19.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:19.810 -07 000000461 INF: FPGA: Recv ZSGSRD 36050
17-03-18 01:41:19.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:19.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:19.820 -07 000000626 INF: FPGA: Recv ZSGSRD 36047
17-03-18 01:41:19.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:19.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:19.830 -07 000000467 INF: FPGA: Recv ZSGSRD 36047
17-03-18 01:41:19.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:19.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:19.840 -07 000000424 INF: FPGA: Recv ZSGSRD 36051
17-03-18 01:41:19.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:19.850 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:41:19.850 -07 000000608 INF: FPGA: Recv ZPIEZORD 31987
17-03-18 01:41:19.860 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:19.860 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.730 V. Piezo Error = -9.0 V.
17-03-18 01:41:19.860 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.9 um, Read 10 ADC samples: Avg = 36049 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36050 (-171.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36047 (-171.0 uncal um), Max = 36054 (-171.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 01:41:19.860 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36049, posNoise = 5, negNoise = 2
17-03-18 01:41:19.860 -07 000000610 INF: Z Motor: After move to -0.171907, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:41:19.860 -07 000000610 INF: Z Motor: Settle wait time = 1432 ms, measure time = 121 ms (allowed 150 ms), total time = 1553 ms
17-03-18 01:41:19.860 -07 000000610 INF: Z Motor: Waiting extra 29 ms after reading position to reach expected total of 150 ms
17-03-18 01:41:19.890 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-18 01:41:19.890 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:41:19.890 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.171909775509476. ----------
17-03-18 01:41:19.890 -07 000000610 INF: Cycle	90	Tile	3	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:41:19.890 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37376, sync = True, waitForSettling = True)
17-03-18 01:41:19.890 -07 000000610 INF: Z Motor: Moving to -0.171096 mm, started at -0.171910 mm, distance = 0.81 um
17-03-18 01:41:19.890 -07 000000610 INF: FPGA: Xmit ZDACW 37376\n [Z Motor]
17-03-18 01:41:19.890 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:41:19.900 -07 000000610 INF: FPGA: 'ZDACW 37376' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:41:19.900 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:41:19.900 -07 000000437 INF: FPGA: Recv ZDACR 37376
17-03-18 01:41:19.910 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:19.910 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:41:20.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:20.060 -07 000000461 INF: FPGA: Recv ZSGSRD 35924
17-03-18 01:41:20.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:41:20.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:20.080 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 4.007176,
17-03-18 01:41:20.080 -07 000000591 INF: FPGA: Recv ZSGSRD 35927
17-03-18 01:41:20.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:41:20.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:20.110 -07 000000467 INF: FPGA: Recv ZSGSRD 35927
17-03-18 01:41:20.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:41:20.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:20.120 -07 000000437 INF: FPGA: Recv ZSGSRD 35924
17-03-18 01:41:20.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:20.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:20.150 -07 000000437 INF: FPGA: Recv ZSGSRD 35922
17-03-18 01:41:20.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:41:20.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:20.160 -07 000000590 INF: FPGA: Recv ZSGSRD 35928
17-03-18 01:41:20.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:20.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:20.170 -07 000000487 INF: FPGA: Recv ZSGSRD 35931
17-03-18 01:41:20.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:20.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:20.180 -07 000000502 INF: FPGA: Recv ZSGSRD 35926
17-03-18 01:41:20.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:20.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:20.190 -07 000000437 INF: FPGA: Recv ZSGSRD 35923
17-03-18 01:41:20.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:20.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:20.200 -07 000000590 INF: FPGA: Recv ZSGSRD 35924
17-03-18 01:41:20.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:20.210 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:41:20.210 -07 000000437 INF: FPGA: Recv ZPIEZORD 31801
17-03-18 01:41:20.220 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:20.220 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.703 V. Piezo Error = -9.1 V.
17-03-18 01:41:20.220 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35926 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35925 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35922 (-170.2 uncal um), Max = 35931 (-170.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:41:20.220 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35926, posNoise = 5, negNoise = 4
17-03-18 01:41:20.220 -07 000000610 INF: Z Motor: After move to -0.171096, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:41:20.220 -07 000000610 INF: Z Motor: MoveAbsStepped took 327 ms)
17-03-18 01:41:20.220 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:41:20.220 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:41:20.220 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:41:20.220 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:41:20.220 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:41:20.220 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:41:20.220 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:41:20.220 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:41:20.220 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:41:20.220 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:41:20.220 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:41:20.220 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:41:20.230 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:41:20.230 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:41:20.230 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:41:20.230 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:41:20.240 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:41:20.240 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:41:20.240 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:41:20.240 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:41:20.240 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37553 150\n [Camera]
17-03-18 01:41:20.440 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:41:20.840 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:41:20.840 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:41:20.840 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:41:20.840 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:41:20.840 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 01:41:20.840 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:41:20.840 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:41:20.840 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:41:20.970 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:41:20.970 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 01:41:21.030 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37553 776
17-03-18 01:41:21.180 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:41:21.220 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 01:41:21.220 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 01:41:21.220 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:21.220 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:41:21.220 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 01:41:21.340 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 01:41:21.340 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 01:41:21.340 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:21.340 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:41:21.350 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-18 01:41:21.370 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:41:21.370 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:41:21.370 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:41:21.370 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:41:21.370 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:41:21.370 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:41:21.380 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:41:21.380 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-18 01:41:21.380 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:41:21.380 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:41:21.560 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:41:21.560 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:41:21.560 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37553 150' command took 2 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-18 01:41:21.560 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.171372
17-03-18 01:41:21.560 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17137 mm
17-03-18 01:41:21.560 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:41:21.560 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 01:41:21.560 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 37436, sync = True, waitForSettling = False)
17-03-18 01:41:21.560 -07 000000462 INF: Z Motor: Moving to -0.171371 mm, started at -0.171120 mm, distance = -0.25 um
17-03-18 01:41:21.560 -07 000000462 INF: FPGA: Xmit ZDACW 37436\n [Z Motor]
17-03-18 01:41:21.560 -07 000000591 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 01:41:21.560 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 01:41:21.570 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:21.570 -07 000000462 INF: FPGA: 'ZDACW 37436' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:41:21.570 -07 000000461 INF: FPGA: Recv YRDPOS 126081
17-03-18 01:41:21.580 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:41:21.580 -07 000000591 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:21.580 -07 000000591 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:41:21.580 -07 000000591 INF: Y Motor: Moving 1343 steps-20
17-03-18 01:41:21.580 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:41:21.580 -07 000000608 INF: FPGA: Recv ZDACR 37436
17-03-18 01:41:21.590 -07 000000462 INF: FPGA: 'ZDACR' command took 3 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:41:21.590 -07 000000462 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-18 01:41:21.590 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:41:21.760 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 01:41:21.760 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 01:41:21.760 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:21.760 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 01:41:21.760 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 01:41:21.760 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:21.760 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:41:21.760 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:41:21.770 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:41:21.780 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 01:41:21.960 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 01:41:21.960 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 01:41:22.010 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:22.010 -07 000000467 INF: FPGA: Recv YRDPOS 127785
17-03-18 01:41:22.020 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:41:22.020 -07 000000591 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:22.020 -07 000000591 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 01:41:22.020 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.840 mm, average velocity = 2.181 mm/sec
17-03-18 01:41:22.280 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:41:22.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:41:22.970 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:22.970 -07 000000590 INF: FPGA: Recv YRDPOS 127785
17-03-18 01:41:22.980 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:41:22.980 -07 000000591 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:23.000 -07 000000591 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:41:23.000 -07 000000591 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:41:23.000 -07 000000591 INF: Y Motor: Moved to 62.3950 after 1438 ms (table move)
17-03-18 01:41:23.000 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171371 mm (DAC = 37436)
17-03-18 01:41:23.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:23.010 -07 000000590 INF: FPGA: Recv ZSGSRD 35959
17-03-18 01:41:23.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 6 ms to get response, and 8 ms overall
17-03-18 01:41:23.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:23.010 -07 000000467 INF: FPGA: Recv ZSGSRD 35963
17-03-18 01:41:23.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:41:23.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:23.020 -07 000000590 INF: FPGA: Recv ZSGSRD 35969
17-03-18 01:41:23.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:23.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:23.030 -07 000000608 INF: FPGA: Recv ZSGSRD 35969
17-03-18 01:41:23.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:41:23.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:23.040 -07 000000437 INF: FPGA: Recv ZSGSRD 35970
17-03-18 01:41:23.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:23.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:23.050 -07 000000502 INF: FPGA: Recv ZSGSRD 35968
17-03-18 01:41:23.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:23.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:23.060 -07 000000437 INF: FPGA: Recv ZSGSRD 35961
17-03-18 01:41:23.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:23.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:23.070 -07 000000608 INF: FPGA: Recv ZSGSRD 35967
17-03-18 01:41:23.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:23.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:23.080 -07 000000590 INF: FPGA: Recv ZSGSRD 35969
17-03-18 01:41:23.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:23.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:23.090 -07 000000608 INF: FPGA: Recv ZSGSRD 35965
17-03-18 01:41:23.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:23.100 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:41:23.100 -07 000000590 INF: FPGA: Recv ZPIEZORD 31862
17-03-18 01:41:23.110 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:23.110 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.712 V. Piezo Error = -9.1 V.
17-03-18 01:41:23.110 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35966 (-170.5 uncal um), Error = 0.9 uncal um, Median = 35968 (-170.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35959 (-170.5 uncal um), Max = 35970 (-170.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:41:23.110 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35966, posNoise = 4, negNoise = 7
17-03-18 01:41:23.110 -07 000000610 INF: Z Motor: After move to -0.171371, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:41:23.110 -07 000000610 INF: Z Motor: Settle wait time = 1441 ms, measure time = 102 ms (allowed 150 ms), total time = 1543 ms
17-03-18 01:41:23.110 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 01:41:23.160 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-18 01:41:23.160 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:41:23.160 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.17137656590171. ----------
17-03-18 01:41:23.160 -07 000000610 INF: Cycle	90	Tile	4	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:41:23.160 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37259, sync = True, waitForSettling = True)
17-03-18 01:41:23.160 -07 000000610 INF: Z Motor: Moving to -0.170561 mm, started at -0.171377 mm, distance = 0.82 um
17-03-18 01:41:23.160 -07 000000610 INF: FPGA: Xmit ZDACW 37259\n [Z Motor]
17-03-18 01:41:23.160 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:41:23.170 -07 000000610 INF: FPGA: 'ZDACW 37259' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:41:23.170 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:41:23.170 -07 000000461 INF: FPGA: Recv ZDACR 37259
17-03-18 01:41:23.180 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:23.180 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:41:23.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:23.330 -07 000000487 INF: FPGA: Recv ZSGSRD 35841
17-03-18 01:41:23.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:41:23.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:23.340 -07 000000626 INF: FPGA: Recv ZSGSRD 35841
17-03-18 01:41:23.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:23.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:23.350 -07 000000461 INF: FPGA: Recv ZSGSRD 35842
17-03-18 01:41:23.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:23.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:23.360 -07 000000487 INF: FPGA: Recv ZSGSRD 35849
17-03-18 01:41:23.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:23.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:23.370 -07 000000438 INF: FPGA: Recv ZSGSRD 35832
17-03-18 01:41:23.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:23.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:23.380 -07 000000626 INF: FPGA: Recv ZSGSRD 35843
17-03-18 01:41:23.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:23.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:23.390 -07 000000438 INF: FPGA: Recv ZSGSRD 35842
17-03-18 01:41:23.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:23.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:23.400 -07 000000608 INF: FPGA: Recv ZSGSRD 35839
17-03-18 01:41:23.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:23.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:23.410 -07 000000437 INF: FPGA: Recv ZSGSRD 35835
17-03-18 01:41:23.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:23.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:23.420 -07 000000608 INF: FPGA: Recv ZSGSRD 35838
17-03-18 01:41:23.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:23.430 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:41:23.430 -07 000000462 INF: FPGA: Recv ZPIEZORD 31729
17-03-18 01:41:23.440 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:23.440 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.685 V. Piezo Error = -9.1 V.
17-03-18 01:41:23.440 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35840 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35841 (-169.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35832 (-169.6 uncal um), Max = 35849 (-169.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:41:23.440 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35840, posNoise = 9, negNoise = 8
17-03-18 01:41:23.440 -07 000000610 INF: Z Motor: After move to -0.170561, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:41:23.440 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 01:41:23.440 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:41:23.440 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:41:23.440 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:41:23.440 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:41:23.440 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:41:23.440 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:41:23.440 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:41:23.440 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:41:23.440 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:41:23.440 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:41:23.440 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:41:23.440 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:41:23.440 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:41:23.440 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:41:23.450 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:41:23.450 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:41:23.460 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:41:23.460 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:41:23.460 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:41:23.460 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:41:23.460 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37436 150\n [Camera]
17-03-18 01:41:23.660 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:41:24.060 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:41:24.060 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:41:24.060 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:41:24.060 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:41:24.060 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:41:24.060 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:41:24.170 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:41:24.170 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-18 01:41:24.180 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:41:24.180 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 01:41:24.250 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37436 776
17-03-18 01:41:24.400 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:41:24.560 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 01:41:24.560 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 01:41:24.560 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:24.560 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 01:41:24.560 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 01:41:24.560 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:24.560 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:41:24.560 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 506 ms.
17-03-18 01:41:24.560 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:41:24.570 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-18 01:41:24.590 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:41:24.590 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:41:24.590 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:41:24.590 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:41:24.590 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:41:24.590 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:41:24.590 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:41:24.590 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:41:24.600 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:41:24.600 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-18 01:41:24.780 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:41:24.780 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:41:24.780 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37436 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-18 01:41:24.780 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:41:24.780 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.170567115171848. ------
17-03-18 01:41:24.790 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17715 mm
17-03-18 01:41:24.790 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:41:24.790 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:41:24.790 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 01:41:24.790 -07 000000591 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 01:41:24.790 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38699, sync = True, waitForSettling = False)
17-03-18 01:41:24.790 -07 000000461 INF: Z Motor: Moving to -0.177153 mm, started at -0.170567 mm, distance = -6.59 um
17-03-18 01:41:24.790 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:41:24.800 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:41:24.800 -07 000000461 INF: FPGA: Xmit ZDACW 38699\n [Z Motor]
17-03-18 01:41:24.800 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 01:41:24.810 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:24.810 -07 000000461 INF: FPGA: 'ZDACW 38699' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:41:24.810 -07 000000590 INF: FPGA: Recv YRDPOS 127785
17-03-18 01:41:24.820 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:41:24.820 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 01:41:24.820 -07 000000591 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:24.820 -07 000000591 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:41:24.820 -07 000000591 INF: Y Motor: Moving 1340 steps-16
17-03-18 01:41:24.830 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:41:24.830 -07 000000590 INF: FPGA: Recv ZDACR 38699
17-03-18 01:41:24.840 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:41:24.840 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:41:24.840 -07 000000461 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 01:41:24.960 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 368 ms.
17-03-18 01:41:24.960 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-18 01:41:24.960 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:24.970 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:41:24.970 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 01:41:24.970 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 01:41:24.970 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:24.970 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:41:24.970 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 01:41:24.970 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 01:41:25.020 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:41:25.020 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:41:25.210 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-18 01:41:25.210 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:41:25.260 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:25.260 -07 000000626 INF: FPGA: Recv YRDPOS 129481
17-03-18 01:41:25.270 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:41:25.270 -07 000000591 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:25.270 -07 000000591 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 01:41:25.270 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-18 01:41:25.470 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 4.015368,
17-03-18 01:41:26.220 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:26.220 -07 000000461 INF: FPGA: Recv YRDPOS 129482
17-03-18 01:41:26.230 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:41:26.230 -07 000000591 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:26.250 -07 000000591 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:41:26.250 -07 000000591 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:41:26.250 -07 000000591 INF: Y Motor: Moved to 63.2236 after 1461 ms (table move)
17-03-18 01:41:26.260 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177153 mm (DAC = 38699)
17-03-18 01:41:26.260 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:26.260 -07 000000608 INF: FPGA: Recv ZSGSRD 36869
17-03-18 01:41:26.270 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:26.270 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:26.270 -07 000000591 INF: FPGA: Recv ZSGSRD 36864
17-03-18 01:41:26.280 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:26.280 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:26.280 -07 000000608 INF: FPGA: Recv ZSGSRD 36864
17-03-18 01:41:26.290 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:26.290 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:26.290 -07 000000461 INF: FPGA: Recv ZSGSRD 36867
17-03-18 01:41:26.300 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:26.300 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:26.300 -07 000000608 INF: FPGA: Recv ZSGSRD 36873
17-03-18 01:41:26.310 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:26.310 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:26.310 -07 000000591 INF: FPGA: Recv ZSGSRD 36865
17-03-18 01:41:26.320 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:26.320 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:26.320 -07 000000608 INF: FPGA: Recv ZSGSRD 36858
17-03-18 01:41:26.330 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:26.330 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:26.330 -07 000000608 INF: FPGA: Recv ZSGSRD 36865
17-03-18 01:41:26.340 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:26.340 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:26.340 -07 000000424 INF: FPGA: Recv ZSGSRD 36866
17-03-18 01:41:26.350 -07 000000437 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:26.350 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:26.350 -07 000000502 INF: FPGA: Recv ZSGSRD 36865
17-03-18 01:41:26.360 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:26.360 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:41:26.360 -07 000000502 INF: FPGA: Recv ZPIEZORD 33060
17-03-18 01:41:26.370 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:26.370 -07 000000437 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.905 V. Piezo Error = -8.4 V.
17-03-18 01:41:26.370 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.2 um, Read 10 ADC samples: Avg = 36866 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36865 (-176.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36858 (-176.2 uncal um), Max = 36873 (-176.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:41:26.370 -07 000000437 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36866, posNoise = 7, negNoise = 8
17-03-18 01:41:26.370 -07 000000437 INF: Z Motor: After move to -0.177153, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:41:26.370 -07 000000437 INF: Z Motor: Settle wait time = 1464 ms, measure time = 110 ms (allowed 150 ms), total time = 1574 ms
17-03-18 01:41:26.370 -07 000000437 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:41:26.410 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 01:41:26.410 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:41:26.410 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:41:26.410 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:41:26.410 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:41:26.410 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:41:26.410 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:41:26.410 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:41:26.410 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:41:26.410 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:41:26.420 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:41:26.420 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:41:26.430 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:41:26.430 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:41:26.430 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:41:26.480 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:41:26.780 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:41:26.780 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:41:26.780 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:41:26.780 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-18 01:41:26.820 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:41:26.820 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 01:41:26.820 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 385 ms overall
17-03-18 01:41:26.900 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 122 ms.
17-03-18 01:41:26.900 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:26.900 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:41:26.900 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 01:41:26.920 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:41:26.920 -07 000000608 INF: Autofocus start
17-03-18 01:41:26.920 -07 000000608 INF: MeasureProfile start
17-03-18 01:41:26.920 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:41:26.930 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:41:26.930 -07 000000487 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:41:26.930 -07 000000608 INF: MeasureProfile done
17-03-18 01:41:26.930 -07 000000608 INF: X=16  Z correction [um]=0.01042744
17-03-18 01:41:26.930 -07 000000608 INF: Autofocus finished
17-03-18 01:41:27.130 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:41:27.130 -07 000000487 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 01:41:27.130 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.177158356829294. ----------
17-03-18 01:41:27.130 -07 000000610 INF: Cycle	90	Tile	5	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:41:27.140 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37213, sync = True, waitForSettling = True)
17-03-18 01:41:27.140 -07 000000610 INF: Z Motor: Moving to -0.170350 mm, started at -0.177158 mm, distance = 6.81 um
17-03-18 01:41:27.140 -07 000000610 INF: FPGA: Xmit ZDACW 37213\n [Z Motor]
17-03-18 01:41:27.140 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:41:27.150 -07 000000610 INF: FPGA: 'ZDACW 37213' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:41:27.150 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:41:27.150 -07 000000438 INF: FPGA: Recv ZDACR 37213
17-03-18 01:41:27.160 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:27.160 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:41:27.280 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:41:27.290 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:41:27.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:27.310 -07 000000590 INF: FPGA: Recv ZSGSRD 35805
17-03-18 01:41:27.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:27.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:27.320 -07 000000502 INF: FPGA: Recv ZSGSRD 35811
17-03-18 01:41:27.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:27.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:27.330 -07 000000462 INF: FPGA: Recv ZSGSRD 35812
17-03-18 01:41:27.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:27.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:27.340 -07 000000462 INF: FPGA: Recv ZSGSRD 35811
17-03-18 01:41:27.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:27.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:27.350 -07 000000462 INF: FPGA: Recv ZSGSRD 35806
17-03-18 01:41:27.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:27.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:27.360 -07 000000462 INF: FPGA: Recv ZSGSRD 35805
17-03-18 01:41:27.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:27.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:27.370 -07 000000462 INF: FPGA: Recv ZSGSRD 35810
17-03-18 01:41:27.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:27.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:27.380 -07 000000462 INF: FPGA: Recv ZSGSRD 35806
17-03-18 01:41:27.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:27.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:27.390 -07 000000591 INF: FPGA: Recv ZSGSRD 35810
17-03-18 01:41:27.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:27.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:27.400 -07 000000437 INF: FPGA: Recv ZSGSRD 35806
17-03-18 01:41:27.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:27.410 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:41:27.410 -07 000000437 INF: FPGA: Recv ZPIEZORD 31636
17-03-18 01:41:27.420 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:27.420 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.678 V. Piezo Error = -9.2 V.
17-03-18 01:41:27.420 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35808 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35808 (-169.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35805 (-169.5 uncal um), Max = 35812 (-169.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:41:27.420 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35808, posNoise = 4, negNoise = 3
17-03-18 01:41:27.420 -07 000000610 INF: Z Motor: After move to -0.170350, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:41:27.420 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:41:27.420 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:41:27.420 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:41:27.420 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:41:27.420 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:41:27.420 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:41:27.420 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:41:27.420 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:41:27.420 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:41:27.420 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:41:27.420 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:41:27.420 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:41:27.420 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:41:27.430 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:41:27.430 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:41:27.430 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:41:27.430 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:41:27.430 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:41:27.430 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:41:27.430 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:41:27.430 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:41:27.440 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37390 150\n [Camera]
17-03-18 01:41:27.640 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 01:41:28.030 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:41:28.030 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:41:28.030 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:41:28.030 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:41:28.030 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:41:28.030 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:41:28.040 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:41:28.040 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:41:28.040 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:41:28.040 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:41:28.220 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37390 776
17-03-18 01:41:28.370 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:41:28.420 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 01:41:28.420 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 01:41:28.420 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:28.420 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:41:28.420 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 01:41:28.420 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 01:41:28.430 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:28.430 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:41:28.430 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:41:28.430 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:41:28.560 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:41:28.560 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:41:28.560 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:41:28.560 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:41:28.560 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:41:28.560 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:41:28.560 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:41:28.560 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:41:28.570 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:41:28.570 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 01:41:28.750 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:41:28.750 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:41:28.750 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37390 150' command took 2 ms to send, 1306 ms to get response, and 1315 ms overall
17-03-18 01:41:28.750 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.170862
17-03-18 01:41:28.750 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17086 mm
17-03-18 01:41:28.750 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:41:28.760 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 01:41:28.760 -07 000000590 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-18 01:41:28.760 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:28.760 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37325, sync = True, waitForSettling = False)
17-03-18 01:41:28.760 -07 000000502 INF: Z Motor: Moving to -0.170863 mm, started at -0.170362 mm, distance = -0.50 um
17-03-18 01:41:28.760 -07 000000437 INF: FPGA: Recv YRDPOS 129482
17-03-18 01:41:28.770 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:28.770 -07 000000502 INF: FPGA: Xmit ZDACW 37325\n [Z Motor]
17-03-18 01:41:28.770 -07 000000590 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:28.770 -07 000000590 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:41:28.770 -07 000000590 INF: Y Motor: Moving 1342 steps-19
17-03-18 01:41:28.770 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 01:41:28.780 -07 000000502 INF: FPGA: 'ZDACW 37325' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:41:28.780 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:41:28.780 -07 000000424 INF: FPGA: Recv ZDACR 37325
17-03-18 01:41:28.790 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:41:28.790 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:28.790 -07 000000502 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-18 01:41:28.960 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:41:28.960 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:41:28.960 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:28.960 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 01:41:28.960 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:41:28.960 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:28.970 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:41:28.970 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:41:28.970 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 01:41:28.980 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 01:41:29.160 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 01:41:29.160 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:41:29.210 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:29.210 -07 000000461 INF: FPGA: Recv YRDPOS 131187
17-03-18 01:41:29.220 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:41:29.220 -07 000000590 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:29.220 -07 000000590 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 01:41:29.220 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-18 01:41:30.170 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:30.170 -07 000000608 INF: FPGA: Recv YRDPOS 131188
17-03-18 01:41:30.180 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:41:30.180 -07 000000590 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:30.200 -07 000000590 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:41:30.200 -07 000000590 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:41:30.200 -07 000000590 INF: Y Motor: Moved to 64.0566 after 1444 ms (table move)
17-03-18 01:41:30.200 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170863 mm (DAC = 37325)
17-03-18 01:41:30.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:30.210 -07 000000590 INF: FPGA: Recv ZSGSRD 35889
17-03-18 01:41:30.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:41:30.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:30.210 -07 000000590 INF: FPGA: Recv ZSGSRD 35882
17-03-18 01:41:30.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:41:30.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:30.220 -07 000000590 INF: FPGA: Recv ZSGSRD 35889
17-03-18 01:41:30.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:30.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:30.230 -07 000000590 INF: FPGA: Recv ZSGSRD 35893
17-03-18 01:41:30.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:30.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:30.240 -07 000000590 INF: FPGA: Recv ZSGSRD 35888
17-03-18 01:41:30.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:30.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:30.250 -07 000000590 INF: FPGA: Recv ZSGSRD 35885
17-03-18 01:41:30.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:30.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:30.260 -07 000000590 INF: FPGA: Recv ZSGSRD 35888
17-03-18 01:41:30.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:30.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:30.270 -07 000000590 INF: FPGA: Recv ZSGSRD 35886
17-03-18 01:41:30.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:30.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:30.280 -07 000000590 INF: FPGA: Recv ZSGSRD 35887
17-03-18 01:41:30.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:30.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:30.290 -07 000000590 INF: FPGA: Recv ZSGSRD 35886
17-03-18 01:41:30.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:30.300 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:41:30.300 -07 000000590 INF: FPGA: Recv ZPIEZORD 31780
17-03-18 01:41:30.310 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:30.310 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.695 V. Piezo Error = -9.1 V.
17-03-18 01:41:30.310 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35887 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35888 (-170.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35882 (-170.0 uncal um), Max = 35893 (-170.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:41:30.310 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35887, posNoise = 6, negNoise = 5
17-03-18 01:41:30.310 -07 000000610 INF: Z Motor: After move to -0.170863, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:41:30.310 -07 000000610 INF: Z Motor: Settle wait time = 1446 ms, measure time = 103 ms (allowed 150 ms), total time = 1549 ms
17-03-18 01:41:30.310 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 01:41:30.360 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-18 01:41:30.360 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:41:30.360 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.17086905314251. ----------
17-03-18 01:41:30.360 -07 000000610 INF: Cycle	90	Tile	6	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:41:30.360 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37148, sync = True, waitForSettling = True)
17-03-18 01:41:30.360 -07 000000610 INF: Z Motor: Moving to -0.170053 mm, started at -0.170869 mm, distance = 0.82 um
17-03-18 01:41:30.360 -07 000000610 INF: FPGA: Xmit ZDACW 37148\n [Z Motor]
17-03-18 01:41:30.360 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 01:41:30.370 -07 000000610 INF: FPGA: 'ZDACW 37148' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:41:30.370 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:41:30.370 -07 000000437 INF: FPGA: Recv ZDACR 37148
17-03-18 01:41:30.380 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:30.380 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:41:30.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:30.530 -07 000000502 INF: FPGA: Recv ZSGSRD 35758
17-03-18 01:41:30.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:41:30.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:30.540 -07 000000437 INF: FPGA: Recv ZSGSRD 35766
17-03-18 01:41:30.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:30.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:30.550 -07 000000437 INF: FPGA: Recv ZSGSRD 35767
17-03-18 01:41:30.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:30.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:30.560 -07 000000424 INF: FPGA: Recv ZSGSRD 35761
17-03-18 01:41:30.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:30.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:30.570 -07 000000424 INF: FPGA: Recv ZSGSRD 35763
17-03-18 01:41:30.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:30.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:30.580 -07 000000424 INF: FPGA: Recv ZSGSRD 35760
17-03-18 01:41:30.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:30.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:30.590 -07 000000424 INF: FPGA: Recv ZSGSRD 35765
17-03-18 01:41:30.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:30.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:30.600 -07 000000424 INF: FPGA: Recv ZSGSRD 35759
17-03-18 01:41:30.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:30.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:30.610 -07 000000424 INF: FPGA: Recv ZSGSRD 35756
17-03-18 01:41:30.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:30.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:30.620 -07 000000424 INF: FPGA: Recv ZSGSRD 35767
17-03-18 01:41:30.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:30.630 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:41:30.630 -07 000000424 INF: FPGA: Recv ZPIEZORD 31624
17-03-18 01:41:30.640 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:30.640 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.668 V. Piezo Error = -9.1 V.
17-03-18 01:41:30.640 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35762 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35762 (-169.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35756 (-169.2 uncal um), Max = 35767 (-169.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:41:30.640 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35762, posNoise = 5, negNoise = 6
17-03-18 01:41:30.640 -07 000000610 INF: Z Motor: After move to -0.170053, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:41:30.640 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 01:41:30.640 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:41:30.640 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:41:30.640 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:41:30.640 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:41:30.640 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:41:30.640 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:41:30.640 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:41:30.640 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:41:30.640 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:41:30.640 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:41:30.640 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:41:30.640 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:41:30.650 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:41:30.650 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:41:30.650 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:41:30.650 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:41:30.650 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:41:30.650 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:41:30.660 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:41:30.660 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:41:30.660 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37325 150\n [Camera]
17-03-18 01:41:30.830 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 3.981281,
17-03-18 01:41:30.860 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:41:31.250 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:41:31.250 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:41:31.250 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:41:31.250 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:41:31.250 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 01:41:31.250 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:41:31.250 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:41:31.250 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:41:31.250 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:41:31.250 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 01:41:31.440 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37325 776
17-03-18 01:41:31.590 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:41:31.630 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 01:41:31.630 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 01:41:31.630 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:31.630 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 01:41:31.630 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 01:41:31.630 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:31.630 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:41:31.640 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:41:31.640 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 01:41:31.760 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 508 ms.
17-03-18 01:41:31.780 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:41:31.780 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:41:31.780 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:41:31.780 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:41:31.780 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:41:31.780 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:41:31.790 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:41:31.790 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:41:31.790 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:41:31.790 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:41:31.970 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:41:31.970 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:41:31.970 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37325 150' command took 2 ms to send, 1307 ms to get response, and 1314 ms overall
17-03-18 01:41:31.970 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.170617
17-03-18 01:41:31.980 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17062 mm
17-03-18 01:41:31.980 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:41:31.980 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 37271, sync = True, waitForSettling = False)
17-03-18 01:41:31.980 -07 000000626 INF: Z Motor: Moving to -0.170616 mm, started at -0.170066 mm, distance = -0.55 um
17-03-18 01:41:31.980 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 01:41:31.980 -07 000000626 INF: FPGA: Xmit ZDACW 37271\n [Z Motor]
17-03-18 01:41:31.980 -07 000000608 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-18 01:41:31.980 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:41:31.990 -07 000000626 INF: FPGA: 'ZDACW 37271' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:41:31.990 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:31.990 -07 000000437 INF: FPGA: Recv YRDPOS 131188
17-03-18 01:41:32.000 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 01:41:32.000 -07 000000608 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:32.000 -07 000000608 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:41:32.000 -07 000000608 INF: Y Motor: Moving 1338 steps-13
17-03-18 01:41:32.000 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:41:32.000 -07 000000590 INF: FPGA: Recv ZDACR 37271
17-03-18 01:41:32.010 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:41:32.010 -07 000000626 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-18 01:41:32.010 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:41:32.180 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:41:32.180 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:41:32.180 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:32.190 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:41:32.190 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:41:32.190 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:32.190 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:41:32.190 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:41:32.190 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:41:32.200 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:41:32.280 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:41:32.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:41:32.380 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 01:41:32.380 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-18 01:41:32.430 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:32.430 -07 000000502 INF: FPGA: Recv YRDPOS 132871
17-03-18 01:41:32.440 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:32.440 -07 000000608 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:32.440 -07 000000608 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 01:41:32.440 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.836 mm, average velocity = 2.155 mm/sec
17-03-18 01:41:33.390 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:33.390 -07 000000590 INF: FPGA: Recv YRDPOS 132871
17-03-18 01:41:33.400 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:33.400 -07 000000608 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:33.420 -07 000000608 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:41:33.420 -07 000000608 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:41:33.420 -07 000000608 INF: Y Motor: Moved to 64.8784 after 1443 ms (table move)
17-03-18 01:41:33.420 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170616 mm (DAC = 37271)
17-03-18 01:41:33.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:33.430 -07 000000590 INF: FPGA: Recv ZSGSRD 35846
17-03-18 01:41:33.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:41:33.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:33.440 -07 000000626 INF: FPGA: Recv ZSGSRD 35847
17-03-18 01:41:33.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:33.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:33.450 -07 000000590 INF: FPGA: Recv ZSGSRD 35856
17-03-18 01:41:33.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:33.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:33.460 -07 000000626 INF: FPGA: Recv ZSGSRD 35856
17-03-18 01:41:33.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:33.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:33.470 -07 000000487 INF: FPGA: Recv ZSGSRD 35849
17-03-18 01:41:33.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:33.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:33.480 -07 000000590 INF: FPGA: Recv ZSGSRD 35845
17-03-18 01:41:33.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:33.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:33.490 -07 000000487 INF: FPGA: Recv ZSGSRD 35848
17-03-18 01:41:33.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:33.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:33.500 -07 000000461 INF: FPGA: Recv ZSGSRD 35846
17-03-18 01:41:33.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:33.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:33.510 -07 000000461 INF: FPGA: Recv ZSGSRD 35844
17-03-18 01:41:33.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:33.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:33.520 -07 000000502 INF: FPGA: Recv ZSGSRD 35847
17-03-18 01:41:33.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:33.530 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:41:33.530 -07 000000502 INF: FPGA: Recv ZPIEZORD 31744
17-03-18 01:41:33.540 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:33.540 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.687 V. Piezo Error = -9.1 V.
17-03-18 01:41:33.540 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35848 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35847 (-169.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35844 (-169.7 uncal um), Max = 35856 (-169.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:41:33.540 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35848, posNoise = 8, negNoise = 4
17-03-18 01:41:33.540 -07 000000610 INF: Z Motor: After move to -0.170616, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:41:33.540 -07 000000610 INF: Z Motor: Settle wait time = 1445 ms, measure time = 112 ms (allowed 150 ms), total time = 1557 ms
17-03-18 01:41:33.540 -07 000000610 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-18 01:41:33.580 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-18 01:41:33.580 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:41:33.580 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.170618508868982. ----------
17-03-18 01:41:33.580 -07 000000610 INF: Cycle	90	Tile	7	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:41:33.580 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37094, sync = True, waitForSettling = True)
17-03-18 01:41:33.580 -07 000000610 INF: Z Motor: Moving to -0.169805 mm, started at -0.170619 mm, distance = 0.81 um
17-03-18 01:41:33.580 -07 000000610 INF: FPGA: Xmit ZDACW 37094\n [Z Motor]
17-03-18 01:41:33.580 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:41:33.590 -07 000000610 INF: FPGA: 'ZDACW 37094' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:41:33.590 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:41:33.590 -07 000000438 INF: FPGA: Recv ZDACR 37094
17-03-18 01:41:33.600 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:33.600 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:41:33.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:33.750 -07 000000461 INF: FPGA: Recv ZSGSRD 35719
17-03-18 01:41:33.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:41:33.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:33.760 -07 000000438 INF: FPGA: Recv ZSGSRD 35722
17-03-18 01:41:33.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:33.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:33.770 -07 000000502 INF: FPGA: Recv ZSGSRD 35733
17-03-18 01:41:33.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:33.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:33.780 -07 000000438 INF: FPGA: Recv ZSGSRD 35723
17-03-18 01:41:33.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:33.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:33.790 -07 000000502 INF: FPGA: Recv ZSGSRD 35729
17-03-18 01:41:33.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:33.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:33.800 -07 000000502 INF: FPGA: Recv ZSGSRD 35714
17-03-18 01:41:33.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:33.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:33.810 -07 000000438 INF: FPGA: Recv ZSGSRD 35718
17-03-18 01:41:33.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:33.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:33.820 -07 000000502 INF: FPGA: Recv ZSGSRD 35730
17-03-18 01:41:33.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:33.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:33.830 -07 000000502 INF: FPGA: Recv ZSGSRD 35722
17-03-18 01:41:33.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:33.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:33.840 -07 000000502 INF: FPGA: Recv ZSGSRD 35723
17-03-18 01:41:33.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:33.850 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:41:33.850 -07 000000462 INF: FPGA: Recv ZPIEZORD 31577
17-03-18 01:41:33.860 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:33.860 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.660 V. Piezo Error = -9.1 V.
17-03-18 01:41:33.860 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35723 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35722 (-168.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35714 (-168.9 uncal um), Max = 35733 (-169.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:41:33.860 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35723, posNoise = 10, negNoise = 9
17-03-18 01:41:33.860 -07 000000610 INF: Z Motor: After move to -0.169805, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:41:33.860 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 01:41:33.860 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:41:33.860 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:41:33.860 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:41:33.860 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:41:33.860 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:41:33.860 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:41:33.860 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:41:33.860 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:41:33.860 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:41:33.860 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:41:33.860 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:41:33.860 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:41:33.870 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:41:33.870 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:41:33.870 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:41:33.870 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:41:33.880 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:41:33.880 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:41:33.880 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:41:33.880 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:41:33.880 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37271 150\n [Camera]
17-03-18 01:41:34.080 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:41:34.480 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:41:34.480 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:41:34.480 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:41:34.480 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:41:34.480 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:41:34.480 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:41:34.480 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:41:34.480 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:41:34.480 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:41:34.480 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:41:34.670 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37271 776
17-03-18 01:41:34.820 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:41:34.850 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 01:41:34.850 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 01:41:34.850 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:34.860 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 01:41:34.860 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 01:41:34.860 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:34.860 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:41:34.860 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 01:41:34.860 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:41:34.870 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 01:41:35.010 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:41:35.010 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:41:35.010 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:41:35.120 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:41:35.120 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:41:35.120 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:41:35.120 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:41:35.120 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:41:35.120 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:41:35.120 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:41:35.200 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:41:35.200 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:41:35.200 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37271 150' command took 2 ms to send, 1303 ms to get response, and 1314 ms overall
17-03-18 01:41:35.200 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.170428
17-03-18 01:41:35.200 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17043 mm
17-03-18 01:41:35.200 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:41:35.200 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 01:41:35.200 -07 000000590 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 01:41:35.200 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:35.200 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 37230, sync = True, waitForSettling = False)
17-03-18 01:41:35.200 -07 000000424 INF: Z Motor: Moving to -0.170428 mm, started at -0.169815 mm, distance = -0.61 um
17-03-18 01:41:35.210 -07 000000424 INF: FPGA: Xmit ZDACW 37230\n [Z Motor]
17-03-18 01:41:35.210 -07 000000437 INF: FPGA: Recv YRDPOS 132871
17-03-18 01:41:35.210 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:41:35.210 -07 000000590 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:35.210 -07 000000590 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:41:35.210 -07 000000590 INF: Y Motor: Moving 1351 steps-29
17-03-18 01:41:35.210 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 01:41:35.220 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:41:35.220 -07 000000424 INF: FPGA: 'ZDACW 37230' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:41:35.230 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:41:35.230 -07 000000501 INF: FPGA: Recv ZDACR 37230
17-03-18 01:41:35.240 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:41:35.240 -07 000000424 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-18 01:41:35.520 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 01:41:35.520 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 01:41:35.520 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:35.520 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 01:41:35.520 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:41:35.520 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:35.520 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:41:35.520 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:41:35.520 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-18 01:41:35.530 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:41:35.590 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 01:41:35.590 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 01:41:35.640 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:35.640 -07 000000461 INF: FPGA: Recv YRDPOS 134581
17-03-18 01:41:35.650 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:41:35.650 -07 000000590 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:35.650 -07 000000590 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 01:41:35.650 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.844 mm, average velocity = 2.187 mm/sec
17-03-18 01:41:36.190 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 3.988112,
17-03-18 01:41:36.600 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:36.600 -07 000000502 INF: FPGA: Recv YRDPOS 134581
17-03-18 01:41:36.610 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:41:36.610 -07 000000590 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:36.640 -07 000000590 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:41:36.640 -07 000000590 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:41:36.640 -07 000000590 INF: Y Motor: Moved to 65.7134 after 1434 ms (table move)
17-03-18 01:41:36.640 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170428 mm (DAC = 37230)
17-03-18 01:41:36.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:36.640 -07 000000590 INF: FPGA: Recv ZSGSRD 35814
17-03-18 01:41:36.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:41:36.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:36.650 -07 000000590 INF: FPGA: Recv ZSGSRD 35832
17-03-18 01:41:36.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:36.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:36.660 -07 000000590 INF: FPGA: Recv ZSGSRD 35822
17-03-18 01:41:36.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:36.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:36.670 -07 000000590 INF: FPGA: Recv ZSGSRD 35822
17-03-18 01:41:36.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:36.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:36.680 -07 000000590 INF: FPGA: Recv ZSGSRD 35819
17-03-18 01:41:36.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:36.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:36.690 -07 000000590 INF: FPGA: Recv ZSGSRD 35820
17-03-18 01:41:36.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:36.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:36.700 -07 000000590 INF: FPGA: Recv ZSGSRD 35821
17-03-18 01:41:36.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:36.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:36.710 -07 000000590 INF: FPGA: Recv ZSGSRD 35809
17-03-18 01:41:36.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:36.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:36.720 -07 000000590 INF: FPGA: Recv ZSGSRD 35822
17-03-18 01:41:36.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:36.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:36.730 -07 000000590 INF: FPGA: Recv ZSGSRD 35827
17-03-18 01:41:36.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:36.740 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:41:36.740 -07 000000462 INF: FPGA: Recv ZPIEZORD 31751
17-03-18 01:41:36.750 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:36.750 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.681 V. Piezo Error = -9.0 V.
17-03-18 01:41:36.750 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35821 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35822 (-169.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 23 (0.1 uncal um), Min = 35809 (-169.5 uncal um), Max = 35832 (-169.6 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-18 01:41:36.750 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35821, posNoise = 11, negNoise = 12
17-03-18 01:41:36.750 -07 000000610 INF: Z Motor: After move to -0.170428, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:41:36.750 -07 000000610 INF: Z Motor: Settle wait time = 1437 ms, measure time = 105 ms (allowed 150 ms), total time = 1542 ms
17-03-18 01:41:36.750 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 01:41:36.800 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-18 01:41:36.800 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:41:36.800 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.170445055141154. ----------
17-03-18 01:41:36.800 -07 000000610 INF: Cycle	90	Tile	8	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:41:36.800 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37053, sync = True, waitForSettling = True)
17-03-18 01:41:36.800 -07 000000610 INF: Z Motor: Moving to -0.169618 mm, started at -0.170445 mm, distance = 0.83 um
17-03-18 01:41:36.800 -07 000000610 INF: FPGA: Xmit ZDACW 37053\n [Z Motor]
17-03-18 01:41:36.800 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 01:41:36.810 -07 000000610 INF: FPGA: 'ZDACW 37053' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:41:36.810 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:41:36.810 -07 000000501 INF: FPGA: Recv ZDACR 37053
17-03-18 01:41:36.820 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:36.820 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:41:36.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:36.970 -07 000000467 INF: FPGA: Recv ZSGSRD 35696
17-03-18 01:41:36.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:41:36.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:36.980 -07 000000487 INF: FPGA: Recv ZSGSRD 35702
17-03-18 01:41:36.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:36.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:36.990 -07 000000461 INF: FPGA: Recv ZSGSRD 35691
17-03-18 01:41:37.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:37.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:37.000 -07 000000591 INF: FPGA: Recv ZSGSRD 35695
17-03-18 01:41:37.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:37.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:37.010 -07 000000608 INF: FPGA: Recv ZSGSRD 35689
17-03-18 01:41:37.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:37.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:37.020 -07 000000462 INF: FPGA: Recv ZSGSRD 35697
17-03-18 01:41:37.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:37.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:37.030 -07 000000424 INF: FPGA: Recv ZSGSRD 35697
17-03-18 01:41:37.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:37.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:37.040 -07 000000591 INF: FPGA: Recv ZSGSRD 35690
17-03-18 01:41:37.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:41:37.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:37.050 -07 000000608 INF: FPGA: Recv ZSGSRD 35693
17-03-18 01:41:37.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:37.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:37.060 -07 000000487 INF: FPGA: Recv ZSGSRD 35691
17-03-18 01:41:37.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:37.070 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:41:37.070 -07 000000461 INF: FPGA: Recv ZPIEZORD 31532
17-03-18 01:41:37.080 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:37.080 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.654 V. Piezo Error = -9.2 V.
17-03-18 01:41:37.080 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35694 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35694 (-168.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35689 (-168.7 uncal um), Max = 35702 (-168.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:41:37.080 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35694, posNoise = 8, negNoise = 5
17-03-18 01:41:37.080 -07 000000610 INF: Z Motor: After move to -0.169618, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:41:37.080 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 01:41:37.080 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:41:37.080 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:41:37.080 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:41:37.080 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:41:37.080 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:41:37.080 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:41:37.080 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:41:37.080 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:41:37.080 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:41:37.080 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:41:37.080 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:41:37.080 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:41:37.080 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:41:37.080 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:41:37.090 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:41:37.090 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:41:37.100 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:41:37.100 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:41:37.100 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:41:37.100 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:41:37.110 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37230 150\n [Camera]
17-03-18 01:41:37.280 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:41:37.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:41:37.310 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:41:37.700 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:41:37.700 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:41:37.700 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:41:37.700 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:41:37.700 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:41:37.700 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:41:37.700 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:41:37.700 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:41:37.710 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:41:37.710 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:41:37.890 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37230 776
17-03-18 01:41:38.040 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:41:38.070 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 01:41:38.070 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 01:41:38.070 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:38.080 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 01:41:38.080 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 01:41:38.080 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:38.080 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:41:38.080 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 01:41:38.080 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:41:38.090 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 01:41:38.230 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:41:38.230 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:41:38.230 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:41:38.230 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:41:38.230 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:41:38.230 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:41:38.240 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:41:38.240 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 01:41:38.240 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:41:38.240 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:41:38.420 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:41:38.420 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:41:38.420 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37230 150' command took 2 ms to send, 1304 ms to get response, and 1313 ms overall
17-03-18 01:41:38.420 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:41:38.420 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.169629180199151. ------
17-03-18 01:41:38.420 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:41:38.420 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17598 mm
17-03-18 01:41:38.420 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:41:38.430 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:41:38.430 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:41:38.430 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38443, sync = True, waitForSettling = False)
17-03-18 01:41:38.430 -07 000000502 INF: Z Motor: Moving to -0.175981 mm, started at -0.169629 mm, distance = -6.35 um
17-03-18 01:41:38.430 -07 000000502 INF: FPGA: Xmit ZDACW 38443\n [Z Motor]
17-03-18 01:41:38.430 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 01:41:38.430 -07 000000462 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 01:41:38.430 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 01:41:38.440 -07 000000502 INF: FPGA: 'ZDACW 38443' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:41:38.440 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:41:38.450 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:38.450 -07 000000487 INF: FPGA: Recv YRDPOS 134581
17-03-18 01:41:38.460 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:41:38.460 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:41:38.460 -07 000000462 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:38.460 -07 000000462 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:41:38.460 -07 000000462 INF: Y Motor: Moving 1343 steps-19
17-03-18 01:41:38.460 -07 000000438 INF: FPGA: Recv ZDACR 38443
17-03-18 01:41:38.470 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:41:38.470 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:41:38.470 -07 000000502 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 01:41:38.610 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 01:41:38.610 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 01:41:38.610 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:38.610 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 01:41:38.620 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 01:41:38.620 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:38.620 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:41:38.620 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 01:41:38.620 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:41:38.630 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 01:41:38.640 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:41:38.640 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-18 01:41:38.840 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 01:41:38.840 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 01:41:38.890 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:38.890 -07 000000501 INF: FPGA: Recv YRDPOS 136270
17-03-18 01:41:38.900 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:41:38.900 -07 000000462 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:38.900 -07 000000462 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 01:41:38.900 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.839 mm, average velocity = 2.174 mm/sec
17-03-18 01:41:39.850 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:39.850 -07 000000438 INF: FPGA: Recv YRDPOS 136271
17-03-18 01:41:39.860 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:41:39.860 -07 000000462 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:39.880 -07 000000462 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:41:39.880 -07 000000462 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:41:39.880 -07 000000462 INF: Y Motor: Moved to 66.5386 after 1455 ms (table move)
17-03-18 01:41:39.890 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175981 mm (DAC = 38443)
17-03-18 01:41:39.890 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:39.890 -07 000000461 INF: FPGA: Recv ZSGSRD 36693
17-03-18 01:41:39.900 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:41:39.900 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:39.900 -07 000000462 INF: FPGA: Recv ZSGSRD 36684
17-03-18 01:41:39.910 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:39.910 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:39.910 -07 000000487 INF: FPGA: Recv ZSGSRD 36691
17-03-18 01:41:39.920 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:39.920 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:39.920 -07 000000462 INF: FPGA: Recv ZSGSRD 36685
17-03-18 01:41:39.930 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:39.930 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:39.930 -07 000000487 INF: FPGA: Recv ZSGSRD 36688
17-03-18 01:41:39.940 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:39.940 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:39.940 -07 000000462 INF: FPGA: Recv ZSGSRD 36680
17-03-18 01:41:39.950 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:39.950 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:39.950 -07 000000437 INF: FPGA: Recv ZSGSRD 36682
17-03-18 01:41:39.960 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:39.960 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:39.960 -07 000000462 INF: FPGA: Recv ZSGSRD 36689
17-03-18 01:41:39.970 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:39.970 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:39.970 -07 000000501 INF: FPGA: Recv ZSGSRD 36681
17-03-18 01:41:39.980 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:39.980 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:39.980 -07 000000611 INF: FPGA: Recv ZSGSRD 36688
17-03-18 01:41:39.990 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:39.990 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:41:39.990 -07 000000437 INF: FPGA: Recv ZPIEZORD 32846
17-03-18 01:41:40.000 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:40.000 -07 000000626 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.866 V. Piezo Error = -8.5 V.
17-03-18 01:41:40.000 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36686 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36686 (-175.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36680 (-175.1 uncal um), Max = 36693 (-175.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:41:40.000 -07 000000626 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36686, posNoise = 7, negNoise = 6
17-03-18 01:41:40.000 -07 000000626 INF: Z Motor: After move to -0.175981, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:41:40.000 -07 000000626 INF: Z Motor: Settle wait time = 1460 ms, measure time = 107 ms (allowed 150 ms), total time = 1567 ms
17-03-18 01:41:40.000 -07 000000626 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 01:41:40.050 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 01:41:40.050 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:41:40.050 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:41:40.050 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:41:40.050 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:41:40.050 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:41:40.050 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:41:40.050 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:41:40.050 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:41:40.050 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:41:40.060 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:41:40.060 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:41:40.070 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:41:40.070 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 01:41:40.070 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:41:40.120 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 01:41:40.420 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:41:40.420 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:41:40.420 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:41:40.420 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-18 01:41:40.450 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:41:40.450 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 01:41:40.450 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 01:41:40.550 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:41:40.550 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:40.550 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:41:40.550 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:41:40.650 -07 000000611 INF: Autofocus start
17-03-18 01:41:40.650 -07 000000611 INF: MeasureProfile start
17-03-18 01:41:40.650 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:41:40.650 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:41:40.660 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:41:40.660 -07 000000487 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:41:40.660 -07 000000611 INF: MeasureProfile done
17-03-18 01:41:40.660 -07 000000611 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 01:41:40.660 -07 000000611 INF: Autofocus finished
17-03-18 01:41:40.860 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:41:40.860 -07 000000487 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:41:40.860 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.176001998643777. ----------
17-03-18 01:41:40.860 -07 000000610 INF: Cycle	90	Tile	9	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:41:40.870 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36923, sync = True, waitForSettling = True)
17-03-18 01:41:40.870 -07 000000610 INF: Z Motor: Moving to -0.169023 mm, started at -0.176002 mm, distance = 6.98 um
17-03-18 01:41:40.870 -07 000000610 INF: FPGA: Xmit ZDACW 36923\n [Z Motor]
17-03-18 01:41:40.870 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 01:41:40.880 -07 000000610 INF: FPGA: 'ZDACW 36923' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:41:40.880 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:41:40.880 -07 000000502 INF: FPGA: Recv ZDACR 36923
17-03-18 01:41:40.890 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:40.890 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:41:41.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:41.040 -07 000000487 INF: FPGA: Recv ZSGSRD 35609
17-03-18 01:41:41.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:41:41.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:41.050 -07 000000461 INF: FPGA: Recv ZSGSRD 35600
17-03-18 01:41:41.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:41.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:41.060 -07 000000502 INF: FPGA: Recv ZSGSRD 35604
17-03-18 01:41:41.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:41.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:41.070 -07 000000462 INF: FPGA: Recv ZSGSRD 35597
17-03-18 01:41:41.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:41.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:41.080 -07 000000501 INF: FPGA: Recv ZSGSRD 35601
17-03-18 01:41:41.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:41.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:41.090 -07 000000461 INF: FPGA: Recv ZSGSRD 35609
17-03-18 01:41:41.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:41.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:41.100 -07 000000437 INF: FPGA: Recv ZSGSRD 35598
17-03-18 01:41:41.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:41.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:41.110 -07 000000626 INF: FPGA: Recv ZSGSRD 35600
17-03-18 01:41:41.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:41.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:41.120 -07 000000487 INF: FPGA: Recv ZSGSRD 35603
17-03-18 01:41:41.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:41.130 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:41.130 -07 000000461 INF: FPGA: Recv ZSGSRD 35600
17-03-18 01:41:41.140 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:41.140 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:41:41.140 -07 000000437 INF: FPGA: Recv ZPIEZORD 31363
17-03-18 01:41:41.150 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:41.150 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.634 V. Piezo Error = -9.3 V.
17-03-18 01:41:41.150 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35602 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35600 (-168.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35597 (-168.1 uncal um), Max = 35609 (-168.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:41:41.150 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35602, posNoise = 7, negNoise = 5
17-03-18 01:41:41.150 -07 000000610 INF: Z Motor: After move to -0.169023, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:41:41.150 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:41:41.150 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:41:41.150 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:41:41.150 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:41:41.150 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:41:41.150 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:41:41.150 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:41:41.150 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:41:41.150 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:41:41.150 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:41:41.150 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:41:41.150 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:41:41.150 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:41:41.160 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:41:41.160 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:41:41.160 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:41:41.160 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:41:41.170 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:41:41.170 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:41:41.170 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:41:41.170 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:41:41.170 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37099 150\n [Camera]
17-03-18 01:41:41.370 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:41:41.550 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 4.031682,
17-03-18 01:41:41.770 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:41:41.770 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:41:41.770 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:41:41.770 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:41:41.770 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1410451104, 0x0, 391868352) start.
17-03-18 01:41:41.770 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:41:41.770 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:41:41.770 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:41:41.890 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:41:41.890 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 01:41:41.960 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37099 776
17-03-18 01:41:42.110 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:41:42.150 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1410451104, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 01:41:42.150 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 01:41:42.150 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:42.150 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:41:42.150 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 01:41:42.260 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 01:41:42.260 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 01:41:42.260 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:42.260 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:41:42.270 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 498 ms.
17-03-18 01:41:42.280 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:41:42.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:41:42.300 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:41:42.300 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:41:42.300 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:41:42.300 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:41:42.300 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:41:42.300 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:41:42.310 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:41:42.310 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:41:42.310 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:41:42.310 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:41:42.490 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:41:42.490 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:41:42.490 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37099 150' command took 2 ms to send, 1303 ms to get response, and 1314 ms overall
17-03-18 01:41:42.490 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.169893
17-03-18 01:41:42.490 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.16989 mm
17-03-18 01:41:42.490 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:41:42.490 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 01:41:42.490 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 37113, sync = True, waitForSettling = False)
17-03-18 01:41:42.490 -07 000000462 INF: Z Motor: Moving to -0.169892 mm, started at -0.169038 mm, distance = -0.85 um
17-03-18 01:41:42.490 -07 000000462 INF: FPGA: Xmit ZDACW 37113\n [Z Motor]
17-03-18 01:41:42.490 -07 000000626 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 01:41:42.500 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:42.500 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:41:42.500 -07 000000462 INF: FPGA: 'ZDACW 37113' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:41:42.500 -07 000000611 INF: FPGA: Recv YRDPOS 136271
17-03-18 01:41:42.510 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:41:42.510 -07 000000626 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:42.510 -07 000000626 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:41:42.510 -07 000000626 INF: Y Motor: Moving 1350 steps-30
17-03-18 01:41:42.510 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:41:42.510 -07 000000611 INF: FPGA: Recv ZDACR 37113
17-03-18 01:41:42.520 -07 000000462 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:41:42.520 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:41:42.520 -07 000000462 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-18 01:41:42.690 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 01:41:42.690 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 01:41:42.690 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:42.690 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 01:41:42.690 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 01:41:42.690 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:42.700 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:41:42.700 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:41:42.700 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:41:42.710 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 01:41:42.890 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 01:41:42.890 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 01:41:42.940 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:42.940 -07 000000467 INF: FPGA: Recv YRDPOS 137976
17-03-18 01:41:42.950 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:42.950 -07 000000626 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:42.950 -07 000000626 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 01:41:42.950 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.844 mm, average velocity = 2.192 mm/sec
17-03-18 01:41:43.900 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:43.900 -07 000000424 INF: FPGA: Recv YRDPOS 137976
17-03-18 01:41:43.910 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:41:43.910 -07 000000626 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:43.930 -07 000000626 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:41:43.930 -07 000000626 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:41:43.930 -07 000000626 INF: Y Motor: Moved to 67.3711 after 1439 ms (table move)
17-03-18 01:41:43.940 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169892 mm (DAC = 37113)
17-03-18 01:41:43.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:43.940 -07 000000461 INF: FPGA: Recv ZSGSRD 35731
17-03-18 01:41:43.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:43.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:43.950 -07 000000626 INF: FPGA: Recv ZSGSRD 35740
17-03-18 01:41:43.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:43.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:43.960 -07 000000461 INF: FPGA: Recv ZSGSRD 35740
17-03-18 01:41:43.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:43.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:43.970 -07 000000611 INF: FPGA: Recv ZSGSRD 35734
17-03-18 01:41:43.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:43.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:43.980 -07 000000461 INF: FPGA: Recv ZSGSRD 35731
17-03-18 01:41:43.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:43.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:43.990 -07 000000461 INF: FPGA: Recv ZSGSRD 35732
17-03-18 01:41:44.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:44.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:44.000 -07 000000611 INF: FPGA: Recv ZSGSRD 35734
17-03-18 01:41:44.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:44.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:44.010 -07 000000461 INF: FPGA: Recv ZSGSRD 35733
17-03-18 01:41:44.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:44.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:44.020 -07 000000461 INF: FPGA: Recv ZSGSRD 35737
17-03-18 01:41:44.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:44.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:44.030 -07 000000467 INF: FPGA: Recv ZSGSRD 35732
17-03-18 01:41:44.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:44.040 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:41:44.040 -07 000000461 INF: FPGA: Recv ZPIEZORD 31556
17-03-18 01:41:44.050 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:44.050 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.663 V. Piezo Error = -9.2 V.
17-03-18 01:41:44.050 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35734 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35734 (-169.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35731 (-169.0 uncal um), Max = 35740 (-169.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:41:44.050 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35734, posNoise = 6, negNoise = 3
17-03-18 01:41:44.050 -07 000000610 INF: Z Motor: After move to -0.169892, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:41:44.050 -07 000000610 INF: Z Motor: Settle wait time = 1442 ms, measure time = 110 ms (allowed 150 ms), total time = 1552 ms
17-03-18 01:41:44.050 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:41:44.090 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-18 01:41:44.090 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:41:44.090 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.169886148684821. ----------
17-03-18 01:41:44.090 -07 000000610 INF: Cycle	90	Tile	10	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:41:44.090 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36936, sync = True, waitForSettling = True)
17-03-18 01:41:44.090 -07 000000610 INF: Z Motor: Moving to -0.169082 mm, started at -0.169886 mm, distance = 0.80 um
17-03-18 01:41:44.090 -07 000000610 INF: FPGA: Xmit ZDACW 36936\n [Z Motor]
17-03-18 01:41:44.090 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 01:41:44.100 -07 000000610 INF: FPGA: 'ZDACW 36936' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:41:44.100 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:41:44.100 -07 000000424 INF: FPGA: Recv ZDACR 36936
17-03-18 01:41:44.110 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:44.110 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:41:44.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:44.260 -07 000000424 INF: FPGA: Recv ZSGSRD 35604
17-03-18 01:41:44.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:41:44.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:44.270 -07 000000437 INF: FPGA: Recv ZSGSRD 35614
17-03-18 01:41:44.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:44.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:44.280 -07 000000424 INF: FPGA: Recv ZSGSRD 35611
17-03-18 01:41:44.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:44.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:44.290 -07 000000437 INF: FPGA: Recv ZSGSRD 35616
17-03-18 01:41:44.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:44.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:44.300 -07 000000424 INF: FPGA: Recv ZSGSRD 35608
17-03-18 01:41:44.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:44.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:44.310 -07 000000487 INF: FPGA: Recv ZSGSRD 35606
17-03-18 01:41:44.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:44.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:44.320 -07 000000461 INF: FPGA: Recv ZSGSRD 35614
17-03-18 01:41:44.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:44.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:44.330 -07 000000502 INF: FPGA: Recv ZSGSRD 35613
17-03-18 01:41:44.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:44.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:44.340 -07 000000461 INF: FPGA: Recv ZSGSRD 35604
17-03-18 01:41:44.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:44.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:44.350 -07 000000424 INF: FPGA: Recv ZSGSRD 35610
17-03-18 01:41:44.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:44.360 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:41:44.360 -07 000000437 INF: FPGA: Recv ZPIEZORD 31376
17-03-18 01:41:44.370 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:44.370 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.636 V. Piezo Error = -9.3 V.
17-03-18 01:41:44.370 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35610 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35610 (-168.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35604 (-168.2 uncal um), Max = 35616 (-168.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:41:44.370 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35610, posNoise = 6, negNoise = 6
17-03-18 01:41:44.370 -07 000000610 INF: Z Motor: After move to -0.169082, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:41:44.370 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 01:41:44.370 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:41:44.370 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:41:44.370 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:41:44.370 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:41:44.370 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:41:44.370 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:41:44.370 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:41:44.370 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:41:44.370 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:41:44.370 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:41:44.370 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:41:44.370 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:41:44.380 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:41:44.380 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:41:44.380 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:41:44.380 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:41:44.380 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:41:44.380 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:41:44.390 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:41:44.390 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:41:44.390 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37113 150\n [Camera]
17-03-18 01:41:44.590 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:41:44.980 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:41:44.980 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:41:44.980 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:41:44.980 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:41:44.980 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:41:44.990 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:41:44.990 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:41:44.990 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) start.
17-03-18 01:41:44.990 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:41:44.990 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 01:41:45.170 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37113 776
17-03-18 01:41:45.320 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:41:45.380 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:41:45.380 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:41:45.380 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:45.390 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:41:45.390 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:41:45.390 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:45.390 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:41:45.390 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:41:45.390 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:41:45.400 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:41:45.510 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:41:45.510 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:41:45.510 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:41:45.630 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:41:45.630 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:41:45.630 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:41:45.630 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:41:45.630 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:41:45.630 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:41:45.630 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:41:45.700 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:41:45.700 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:41:45.700 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37113 150' command took 2 ms to send, 1309 ms to get response, and 1314 ms overall
17-03-18 01:41:45.710 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.169344
17-03-18 01:41:45.710 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.16934 mm
17-03-18 01:41:45.710 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:41:45.710 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 01:41:45.710 -07 000000467 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 01:41:45.710 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:45.710 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 36993, sync = True, waitForSettling = False)
17-03-18 01:41:45.710 -07 000000461 INF: Z Motor: Moving to -0.169343 mm, started at -0.169090 mm, distance = -0.25 um
17-03-18 01:41:45.710 -07 000000502 INF: FPGA: Recv YRDPOS 137977
17-03-18 01:41:45.720 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:41:45.720 -07 000000461 INF: FPGA: Xmit ZDACW 36993\n [Z Motor]
17-03-18 01:41:45.720 -07 000000467 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:45.720 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 01:41:45.720 -07 000000467 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:41:45.720 -07 000000467 INF: Y Motor: Moving 1346 steps-24
17-03-18 01:41:45.730 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:41:45.730 -07 000000461 INF: FPGA: 'ZDACW 36993' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:41:45.740 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:41:45.740 -07 000000462 INF: FPGA: Recv ZDACR 36993
17-03-18 01:41:45.750 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:41:45.750 -07 000000461 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 01:41:46.030 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:41:46.030 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:41:46.030 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:46.030 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:41:46.030 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:41:46.030 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:46.040 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:41:46.040 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-18 01:41:46.040 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:41:46.040 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 01:41:46.100 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 01:41:46.100 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 01:41:46.160 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:46.160 -07 000000487 INF: FPGA: Recv YRDPOS 139683
17-03-18 01:41:46.170 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:41:46.170 -07 000000467 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:46.170 -07 000000467 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 01:41:46.170 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.842 mm, average velocity = 2.191 mm/sec
17-03-18 01:41:46.910 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 4.043918,
17-03-18 01:41:47.120 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:47.120 -07 000000437 INF: FPGA: Recv YRDPOS 139683
17-03-18 01:41:47.130 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:41:47.130 -07 000000467 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:47.150 -07 000000467 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:41:47.150 -07 000000467 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:41:47.150 -07 000000467 INF: Y Motor: Moved to 68.2046 after 1442 ms (table move)
17-03-18 01:41:47.150 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169343 mm (DAC = 36993)
17-03-18 01:41:47.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:47.160 -07 000000487 INF: FPGA: Recv ZSGSRD 35651
17-03-18 01:41:47.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:41:47.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:47.160 -07 000000611 INF: FPGA: Recv ZSGSRD 35649
17-03-18 01:41:47.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:41:47.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:47.170 -07 000000487 INF: FPGA: Recv ZSGSRD 35652
17-03-18 01:41:47.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:47.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:47.180 -07 000000462 INF: FPGA: Recv ZSGSRD 35650
17-03-18 01:41:47.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:47.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:47.190 -07 000000502 INF: FPGA: Recv ZSGSRD 35652
17-03-18 01:41:47.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:47.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:47.200 -07 000000437 INF: FPGA: Recv ZSGSRD 35645
17-03-18 01:41:47.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:47.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:47.220 -07 000000467 INF: FPGA: Recv ZSGSRD 35650
17-03-18 01:41:47.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:41:47.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:47.230 -07 000000437 INF: FPGA: Recv ZSGSRD 35652
17-03-18 01:41:47.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:47.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:47.240 -07 000000611 INF: FPGA: Recv ZSGSRD 35649
17-03-18 01:41:47.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:47.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:47.250 -07 000000462 INF: FPGA: Recv ZSGSRD 35653
17-03-18 01:41:47.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:47.260 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:41:47.260 -07 000000611 INF: FPGA: Recv ZPIEZORD 31463
17-03-18 01:41:47.270 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:47.270 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.645 V. Piezo Error = -9.2 V.
17-03-18 01:41:47.270 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35650 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35650 (-168.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35645 (-168.4 uncal um), Max = 35653 (-168.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:41:47.270 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35650, posNoise = 3, negNoise = 5
17-03-18 01:41:47.270 -07 000000610 INF: Z Motor: After move to -0.169343, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:41:47.270 -07 000000610 INF: Z Motor: Settle wait time = 1443 ms, measure time = 112 ms (allowed 150 ms), total time = 1555 ms
17-03-18 01:41:47.270 -07 000000610 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-18 01:41:47.280 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:41:47.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:41:47.310 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-18 01:41:47.310 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:41:47.310 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.169346514864913. ----------
17-03-18 01:41:47.310 -07 000000610 INF: Cycle	90	Tile	11	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:41:47.310 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36816, sync = True, waitForSettling = True)
17-03-18 01:41:47.330 -07 000000610 INF: Z Motor: Moving to -0.168533 mm, started at -0.169347 mm, distance = 0.81 um
17-03-18 01:41:47.330 -07 000000610 INF: FPGA: Xmit ZDACW 36816\n [Z Motor]
17-03-18 01:41:47.340 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 01:41:47.340 -07 000000610 INF: FPGA: 'ZDACW 36816' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:41:47.340 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:41:47.340 -07 000000467 INF: FPGA: Recv ZDACR 36816
17-03-18 01:41:47.350 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:47.350 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:41:47.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:47.500 -07 000000424 INF: FPGA: Recv ZSGSRD 35531
17-03-18 01:41:47.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:41:47.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:47.510 -07 000000487 INF: FPGA: Recv ZSGSRD 35527
17-03-18 01:41:47.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:47.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:47.520 -07 000000424 INF: FPGA: Recv ZSGSRD 35526
17-03-18 01:41:47.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:47.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:47.530 -07 000000462 INF: FPGA: Recv ZSGSRD 35523
17-03-18 01:41:47.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:47.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:47.540 -07 000000611 INF: FPGA: Recv ZSGSRD 35524
17-03-18 01:41:47.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:47.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:47.550 -07 000000437 INF: FPGA: Recv ZSGSRD 35528
17-03-18 01:41:47.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:47.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:47.560 -07 000000461 INF: FPGA: Recv ZSGSRD 35522
17-03-18 01:41:47.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:47.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:47.570 -07 000000437 INF: FPGA: Recv ZSGSRD 35525
17-03-18 01:41:47.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:47.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:47.580 -07 000000502 INF: FPGA: Recv ZSGSRD 35522
17-03-18 01:41:47.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:47.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:47.590 -07 000000462 INF: FPGA: Recv ZSGSRD 35525
17-03-18 01:41:47.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:47.600 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:41:47.600 -07 000000611 INF: FPGA: Recv ZPIEZORD 31265
17-03-18 01:41:47.610 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:47.610 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.618 V. Piezo Error = -9.4 V.
17-03-18 01:41:47.610 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35525 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35525 (-167.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35522 (-167.7 uncal um), Max = 35531 (-167.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:41:47.610 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35525, posNoise = 6, negNoise = 3
17-03-18 01:41:47.610 -07 000000610 INF: Z Motor: After move to -0.168533, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:41:47.610 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 01:41:47.610 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:41:47.610 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:41:47.610 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:41:47.610 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:41:47.610 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:41:47.610 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:41:47.610 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:41:47.610 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:41:47.610 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:41:47.610 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:41:47.610 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:41:47.610 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:41:47.620 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:41:47.620 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:41:47.620 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:41:47.620 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:41:47.630 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:41:47.630 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:41:47.630 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:41:47.630 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:41:47.630 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36993 150\n [Camera]
17-03-18 01:41:47.830 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:41:48.230 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:41:48.230 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:41:48.230 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:41:48.230 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:41:48.230 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:41:48.230 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:41:48.230 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:41:48.230 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:41:48.230 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:41:48.230 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 01:41:48.420 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36993 778
17-03-18 01:41:48.570 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:41:48.620 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 01:41:48.620 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 01:41:48.620 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:48.620 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 01:41:48.620 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 01:41:48.620 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:48.620 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:41:48.620 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:41:48.620 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:41:48.630 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:41:48.760 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:41:48.760 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:41:48.760 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:41:48.760 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:41:48.760 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-18 01:41:48.760 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:41:48.760 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:41:48.760 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:41:48.880 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:41:48.880 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 01:41:48.950 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:41:48.950 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:41:48.950 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36993 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-18 01:41:48.950 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.169055
17-03-18 01:41:48.950 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16905 mm
17-03-18 01:41:48.950 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:41:48.950 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 01:41:48.950 -07 000000487 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 01:41:48.950 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:48.950 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 36930, sync = True, waitForSettling = False)
17-03-18 01:41:48.950 -07 000000502 INF: Z Motor: Moving to -0.169055 mm, started at -0.168543 mm, distance = -0.51 um
17-03-18 01:41:48.960 -07 000000502 INF: FPGA: Xmit ZDACW 36930\n [Z Motor]
17-03-18 01:41:48.960 -07 000000467 INF: FPGA: Recv YRDPOS 139683
17-03-18 01:41:48.960 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:41:48.960 -07 000000487 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:48.960 -07 000000487 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:41:48.960 -07 000000487 INF: Y Motor: Moving 1341 steps-16
17-03-18 01:41:48.960 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 01:41:48.970 -07 000000502 INF: FPGA: 'ZDACW 36930' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:41:48.970 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:41:48.980 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:41:48.980 -07 000000467 INF: FPGA: Recv ZDACR 36930
17-03-18 01:41:48.990 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:41:48.990 -07 000000502 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-18 01:41:49.140 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 01:41:49.140 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 01:41:49.140 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:49.140 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:41:49.140 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 01:41:49.250 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 01:41:49.250 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 01:41:49.250 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:49.260 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:41:49.260 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 503 ms.
17-03-18 01:41:49.340 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 01:41:49.340 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 01:41:49.390 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:49.390 -07 000000424 INF: FPGA: Recv YRDPOS 141366
17-03-18 01:41:49.400 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:41:49.400 -07 000000487 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:49.400 -07 000000487 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 01:41:49.400 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.838 mm, average velocity = 2.171 mm/sec
17-03-18 01:41:50.350 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:50.350 -07 000000502 INF: FPGA: Recv YRDPOS 141366
17-03-18 01:41:50.360 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:50.360 -07 000000487 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:50.380 -07 000000487 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:41:50.380 -07 000000487 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:41:50.380 -07 000000487 INF: Y Motor: Moved to 69.0264 after 1429 ms (table move)
17-03-18 01:41:50.380 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169055 mm (DAC = 36930)
17-03-18 01:41:50.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:50.390 -07 000000611 INF: FPGA: Recv ZSGSRD 35611
17-03-18 01:41:50.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:41:50.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:50.400 -07 000000467 INF: FPGA: Recv ZSGSRD 35607
17-03-18 01:41:50.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:50.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:50.410 -07 000000502 INF: FPGA: Recv ZSGSRD 35606
17-03-18 01:41:50.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:50.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:50.420 -07 000000467 INF: FPGA: Recv ZSGSRD 35607
17-03-18 01:41:50.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:50.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:50.430 -07 000000424 INF: FPGA: Recv ZSGSRD 35605
17-03-18 01:41:50.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:50.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:50.440 -07 000000467 INF: FPGA: Recv ZSGSRD 35603
17-03-18 01:41:50.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:50.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:50.450 -07 000000611 INF: FPGA: Recv ZSGSRD 35603
17-03-18 01:41:50.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:50.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:50.460 -07 000000467 INF: FPGA: Recv ZSGSRD 35608
17-03-18 01:41:50.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:50.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:50.470 -07 000000437 INF: FPGA: Recv ZSGSRD 35607
17-03-18 01:41:50.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:50.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:50.480 -07 000000611 INF: FPGA: Recv ZSGSRD 35610
17-03-18 01:41:50.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:50.490 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:41:50.490 -07 000000424 INF: FPGA: Recv ZPIEZORD 31419
17-03-18 01:41:50.500 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:50.500 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.635 V. Piezo Error = -9.2 V.
17-03-18 01:41:50.500 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35607 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35607 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35603 (-168.2 uncal um), Max = 35611 (-168.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:41:50.500 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35607, posNoise = 4, negNoise = 4
17-03-18 01:41:50.500 -07 000000610 INF: Z Motor: After move to -0.169055, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:41:50.500 -07 000000610 INF: Z Motor: Settle wait time = 1431 ms, measure time = 110 ms (allowed 150 ms), total time = 1541 ms
17-03-18 01:41:50.500 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:41:50.540 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-18 01:41:50.540 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:41:50.540 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.169070273742817. ----------
17-03-18 01:41:50.540 -07 000000610 INF: Cycle	90	Tile	12	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:41:50.540 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36753, sync = True, waitForSettling = True)
17-03-18 01:41:50.540 -07 000000610 INF: Z Motor: Moving to -0.168244 mm, started at -0.169070 mm, distance = 0.83 um
17-03-18 01:41:50.540 -07 000000610 INF: FPGA: Xmit ZDACW 36753\n [Z Motor]
17-03-18 01:41:50.540 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:41:50.550 -07 000000610 INF: FPGA: 'ZDACW 36753' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:41:50.550 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:41:50.550 -07 000000467 INF: FPGA: Recv ZDACR 36753
17-03-18 01:41:50.560 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:41:50.560 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:41:50.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:50.710 -07 000000461 INF: FPGA: Recv ZSGSRD 35483
17-03-18 01:41:50.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:50.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:50.720 -07 000000437 INF: FPGA: Recv ZSGSRD 35481
17-03-18 01:41:50.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:50.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:50.730 -07 000000502 INF: FPGA: Recv ZSGSRD 35481
17-03-18 01:41:50.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:50.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:50.740 -07 000000487 INF: FPGA: Recv ZSGSRD 35478
17-03-18 01:41:50.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:50.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:50.750 -07 000000462 INF: FPGA: Recv ZSGSRD 35484
17-03-18 01:41:50.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:50.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:50.760 -07 000000467 INF: FPGA: Recv ZSGSRD 35478
17-03-18 01:41:50.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:50.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:50.770 -07 000000437 INF: FPGA: Recv ZSGSRD 35480
17-03-18 01:41:50.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:50.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:50.780 -07 000000462 INF: FPGA: Recv ZSGSRD 35479
17-03-18 01:41:50.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:50.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:50.790 -07 000000502 INF: FPGA: Recv ZSGSRD 35480
17-03-18 01:41:50.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:50.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:50.800 -07 000000424 INF: FPGA: Recv ZSGSRD 35484
17-03-18 01:41:50.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:50.810 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:41:50.810 -07 000000437 INF: FPGA: Recv ZPIEZORD 31273
17-03-18 01:41:50.820 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:50.820 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.608 V. Piezo Error = -9.3 V.
17-03-18 01:41:50.820 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35481 (-167.4 uncal um), Error = 0.9 uncal um, Median = 35480 (-167.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35478 (-167.4 uncal um), Max = 35484 (-167.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:41:50.820 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35481, posNoise = 3, negNoise = 3
17-03-18 01:41:50.820 -07 000000610 INF: Z Motor: After move to -0.168244, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:41:50.820 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 01:41:50.820 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:41:50.820 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:41:50.820 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:41:50.820 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:41:50.820 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:41:50.820 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:41:50.820 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:41:50.820 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:41:50.820 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:41:50.820 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:41:50.820 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:41:50.820 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:41:50.830 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:41:50.830 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:41:50.830 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:41:50.830 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:41:50.840 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:41:50.840 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:41:50.840 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:41:50.840 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:41:50.840 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36930 150\n [Camera]
17-03-18 01:41:51.040 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:41:51.440 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:41:51.440 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:41:51.440 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:41:51.440 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:41:51.440 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:41:51.440 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:41:51.440 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:41:51.440 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:41:51.450 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:41:51.450 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:41:51.630 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36930 776
17-03-18 01:41:51.780 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:41:51.830 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 01:41:51.830 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 01:41:51.830 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:51.830 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:41:51.830 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:41:51.830 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 01:41:51.830 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 01:41:51.830 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:51.840 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:41:51.840 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:41:51.970 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:41:51.970 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:41:51.970 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:41:51.970 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:41:51.970 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:41:51.970 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:41:51.970 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:41:51.970 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 01:41:51.970 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:41:51.970 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 01:41:52.160 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:41:52.160 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:41:52.160 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36930 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-18 01:41:52.160 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:41:52.160 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.168260823012955. ------
17-03-18 01:41:52.160 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:41:52.160 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17475 mm
17-03-18 01:41:52.160 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:41:52.170 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:41:52.170 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 01:41:52.170 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:41:52.170 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 01:41:52.170 -07 000000502 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 01:41:52.170 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 38175, sync = True, waitForSettling = False)
17-03-18 01:41:52.170 -07 000000467 INF: Z Motor: Moving to -0.174754 mm, started at -0.168261 mm, distance = -6.49 um
17-03-18 01:41:52.180 -07 000000467 INF: FPGA: Xmit ZDACW 38175\n [Z Motor]
17-03-18 01:41:52.180 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:41:52.190 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:52.190 -07 000000467 INF: FPGA: 'ZDACW 38175' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:41:52.190 -07 000000611 INF: FPGA: Recv YRDPOS 141367
17-03-18 01:41:52.200 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:41:52.200 -07 000000502 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:52.200 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:41:52.200 -07 000000608 INF: FPGA: Recv ZDACR 38175
17-03-18 01:41:52.200 -07 000000502 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:41:52.200 -07 000000502 INF: Y Motor: Moving 1353 steps-33
17-03-18 01:41:52.210 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:41:52.210 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:41:52.210 -07 000000467 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 01:41:52.270 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 4.008536,
17-03-18 01:41:52.280 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:41:52.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:41:52.350 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 01:41:52.350 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 01:41:52.350 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:52.350 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 01:41:52.350 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 01:41:52.350 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:52.350 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:41:52.350 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:41:52.350 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 01:41:52.360 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 01:41:52.370 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:41:52.370 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 01:41:52.580 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 01:41:52.580 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 01:41:52.640 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:52.640 -07 000000590 INF: FPGA: Recv YRDPOS 143078
17-03-18 01:41:52.650 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:41:52.650 -07 000000502 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:52.650 -07 000000502 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 01:41:52.650 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.846 mm, average velocity = 2.204 mm/sec
17-03-18 01:41:53.600 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:53.600 -07 000000611 INF: FPGA: Recv YRDPOS 143079
17-03-18 01:41:53.610 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:41:53.610 -07 000000502 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:53.630 -07 000000502 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:41:53.630 -07 000000502 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:41:53.630 -07 000000502 INF: Y Motor: Moved to 69.8628 after 1464 ms (table move)
17-03-18 01:41:53.640 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174754 mm (DAC = 38175)
17-03-18 01:41:53.640 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:53.640 -07 000000502 INF: FPGA: Recv ZSGSRD 36489
17-03-18 01:41:53.650 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:53.650 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:53.650 -07 000000437 INF: FPGA: Recv ZSGSRD 36494
17-03-18 01:41:53.660 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:53.660 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:53.660 -07 000000502 INF: FPGA: Recv ZSGSRD 36500
17-03-18 01:41:53.670 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:53.670 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:53.670 -07 000000437 INF: FPGA: Recv ZSGSRD 36489
17-03-18 01:41:53.680 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:53.680 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:53.680 -07 000000502 INF: FPGA: Recv ZSGSRD 36487
17-03-18 01:41:53.690 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:53.690 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:53.690 -07 000000611 INF: FPGA: Recv ZSGSRD 36492
17-03-18 01:41:53.700 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:53.700 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:53.700 -07 000000424 INF: FPGA: Recv ZSGSRD 36496
17-03-18 01:41:53.710 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:53.710 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:53.710 -07 000000437 INF: FPGA: Recv ZSGSRD 36494
17-03-18 01:41:53.720 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:53.720 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:53.720 -07 000000608 INF: FPGA: Recv ZSGSRD 36485
17-03-18 01:41:53.730 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:53.730 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:53.730 -07 000000467 INF: FPGA: Recv ZSGSRD 36500
17-03-18 01:41:53.740 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:53.740 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:41:53.740 -07 000000512 INF: FPGA: Recv ZPIEZORD 32590
17-03-18 01:41:53.750 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:53.750 -07 000000461 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.825 V. Piezo Error = -8.6 V.
17-03-18 01:41:53.750 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36493 (-173.9 uncal um), Error = 0.9 uncal um, Median = 36493 (-173.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36485 (-173.8 uncal um), Max = 36500 (-173.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:41:53.750 -07 000000461 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36493, posNoise = 7, negNoise = 8
17-03-18 01:41:53.750 -07 000000461 INF: Z Motor: After move to -0.174754, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:41:53.750 -07 000000461 INF: Z Motor: Settle wait time = 1467 ms, measure time = 110 ms (allowed 150 ms), total time = 1577 ms
17-03-18 01:41:53.750 -07 000000461 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:41:53.790 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 01:41:53.790 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:41:53.790 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:41:53.790 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:41:53.790 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:41:53.790 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:41:53.790 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:41:53.790 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:41:53.790 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:41:53.790 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:41:53.800 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:41:53.800 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:41:53.810 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:41:53.810 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 01:41:53.810 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:41:53.860 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:41:54.160 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:41:54.160 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:41:54.160 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:41:54.160 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 01:41:54.200 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:41:54.200 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 01:41:54.200 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 386 ms to get response, and 388 ms overall
17-03-18 01:41:54.290 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:41:54.290 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:54.290 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:41:54.290 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:41:54.400 -07 000000424 INF: Autofocus start
17-03-18 01:41:54.400 -07 000000424 INF: MeasureProfile start
17-03-18 01:41:54.400 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:41:54.400 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:41:54.410 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:41:54.410 -07 000000487 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:41:54.410 -07 000000424 INF: MeasureProfile done
17-03-18 01:41:54.410 -07 000000424 INF: X=0  Z correction [um]=-0.0713522
17-03-18 01:41:54.410 -07 000000424 INF: Autofocus finished
17-03-18 01:41:54.610 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:41:54.610 -07 000000487 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:41:54.610 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.174762125700418. ----------
17-03-18 01:41:54.610 -07 000000610 INF: Cycle	90	Tile	13	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:41:54.620 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36672, sync = True, waitForSettling = True)
17-03-18 01:41:54.620 -07 000000610 INF: Z Motor: Moving to -0.167874 mm, started at -0.174762 mm, distance = 6.89 um
17-03-18 01:41:54.620 -07 000000610 INF: FPGA: Xmit ZDACW 36672\n [Z Motor]
17-03-18 01:41:54.620 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:41:54.630 -07 000000610 INF: FPGA: 'ZDACW 36672' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:54.630 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:41:54.630 -07 000000461 INF: FPGA: Recv ZDACR 36672
17-03-18 01:41:54.640 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:54.640 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:41:54.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:54.790 -07 000000591 INF: FPGA: Recv ZSGSRD 35425
17-03-18 01:41:54.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:41:54.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:54.800 -07 000000611 INF: FPGA: Recv ZSGSRD 35423
17-03-18 01:41:54.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:54.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:54.810 -07 000000438 INF: FPGA: Recv ZSGSRD 35421
17-03-18 01:41:54.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:54.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:54.820 -07 000000437 INF: FPGA: Recv ZSGSRD 35416
17-03-18 01:41:54.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:54.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:54.830 -07 000000461 INF: FPGA: Recv ZSGSRD 35424
17-03-18 01:41:54.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:54.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:54.840 -07 000000501 INF: FPGA: Recv ZSGSRD 35425
17-03-18 01:41:54.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:54.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:54.850 -07 000000626 INF: FPGA: Recv ZSGSRD 35420
17-03-18 01:41:54.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:54.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:54.860 -07 000000437 INF: FPGA: Recv ZSGSRD 35423
17-03-18 01:41:54.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:54.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:54.870 -07 000000502 INF: FPGA: Recv ZSGSRD 35426
17-03-18 01:41:54.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:54.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:54.880 -07 000000501 INF: FPGA: Recv ZSGSRD 35422
17-03-18 01:41:54.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:54.890 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:41:54.890 -07 000000626 INF: FPGA: Recv ZPIEZORD 31195
17-03-18 01:41:54.900 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:54.900 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.596 V. Piezo Error = -9.3 V.
17-03-18 01:41:54.900 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35422 (-167.0 uncal um), Error = 0.9 uncal um, Median = 35423 (-167.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35416 (-167.0 uncal um), Max = 35426 (-167.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:41:54.900 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35422, posNoise = 4, negNoise = 6
17-03-18 01:41:54.900 -07 000000610 INF: Z Motor: After move to -0.167874, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:41:54.900 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:41:54.900 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:41:54.900 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:41:54.900 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:41:54.900 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:41:54.900 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:41:54.900 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:41:54.900 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:41:54.900 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:41:54.900 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:41:54.900 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:41:54.900 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 01:41:54.900 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:41:54.910 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:41:54.910 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:41:54.910 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:41:54.910 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:41:54.920 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:41:54.920 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:41:54.920 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:41:54.920 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:41:54.920 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36849 150\n [Camera]
17-03-18 01:41:55.120 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 01:41:55.510 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:41:55.510 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:41:55.510 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:41:55.510 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:41:55.510 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 01:41:55.510 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:41:55.510 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:41:55.510 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:41:55.510 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:41:55.510 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:41:55.700 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36849 776
17-03-18 01:41:55.850 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:41:55.900 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 01:41:55.900 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 01:41:55.900 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:55.900 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 01:41:55.900 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 01:41:55.900 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:55.910 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:41:55.910 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:41:55.910 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:41:55.910 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:41:56.040 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 01:41:56.040 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 01:41:56.050 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:41:56.050 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:41:56.050 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 01:41:56.050 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 01:41:56.050 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 01:41:56.050 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:41:56.050 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:41:56.050 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 01:41:56.230 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:41:56.230 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:41:56.230 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36849 150' command took 2 ms to send, 1308 ms to get response, and 1314 ms overall
17-03-18 01:41:56.240 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.167898
17-03-18 01:41:56.240 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.16790 mm
17-03-18 01:41:56.240 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:41:56.240 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 01:41:56.240 -07 000000512 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 01:41:56.240 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:56.240 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 36677, sync = True, waitForSettling = False)
17-03-18 01:41:56.240 -07 000000438 INF: Z Motor: Moving to -0.167897 mm, started at -0.167882 mm, distance = -0.01 um
17-03-18 01:41:56.240 -07 000000501 INF: FPGA: Recv YRDPOS 143079
17-03-18 01:41:56.250 -07 000000438 INF: FPGA: Xmit ZDACW 36677\n [Z Motor]
17-03-18 01:41:56.250 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:41:56.250 -07 000000512 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:56.250 -07 000000512 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:41:56.250 -07 000000512 INF: Y Motor: Moving 1344 steps-21
17-03-18 01:41:56.250 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:41:56.260 -07 000000438 INF: FPGA: 'ZDACW 36677' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:41:56.260 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:41:56.270 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:41:56.270 -07 000000501 INF: FPGA: Recv ZDACR 36677
17-03-18 01:41:56.280 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:41:56.280 -07 000000438 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 01:41:56.450 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 01:41:56.450 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:41:56.450 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:56.450 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 01:41:56.450 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 01:41:56.450 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:56.570 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 117 ms.
17-03-18 01:41:56.570 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 122 ms.
17-03-18 01:41:56.570 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 526 ms.
17-03-18 01:41:56.580 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 528 ms.
17-03-18 01:41:56.630 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 01:41:56.630 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 01:41:56.680 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:56.680 -07 000000437 INF: FPGA: Recv YRDPOS 144768
17-03-18 01:41:56.690 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:41:56.690 -07 000000512 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:56.690 -07 000000512 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 01:41:56.690 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.840 mm, average velocity = 2.170 mm/sec
17-03-18 01:41:57.280 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:41:57.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:41:57.630 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 3.999021,
17-03-18 01:41:57.640 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:57.640 -07 000000424 INF: FPGA: Recv YRDPOS 144768
17-03-18 01:41:57.650 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:41:57.650 -07 000000512 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:57.680 -07 000000512 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:41:57.680 -07 000000512 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:41:57.680 -07 000000512 INF: Y Motor: Moved to 70.6875 after 1436 ms (table move)
17-03-18 01:41:57.680 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167897 mm (DAC = 36677)
17-03-18 01:41:57.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:57.680 -07 000000501 INF: FPGA: Recv ZSGSRD 35422
17-03-18 01:41:57.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:41:57.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:57.690 -07 000000512 INF: FPGA: Recv ZSGSRD 35427
17-03-18 01:41:57.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:57.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:57.700 -07 000000467 INF: FPGA: Recv ZSGSRD 35432
17-03-18 01:41:57.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:57.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:57.710 -07 000000438 INF: FPGA: Recv ZSGSRD 35424
17-03-18 01:41:57.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:57.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:57.720 -07 000000437 INF: FPGA: Recv ZSGSRD 35419
17-03-18 01:41:57.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:57.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:57.730 -07 000000512 INF: FPGA: Recv ZSGSRD 35422
17-03-18 01:41:57.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:57.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:57.740 -07 000000437 INF: FPGA: Recv ZSGSRD 35420
17-03-18 01:41:57.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:57.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:57.750 -07 000000512 INF: FPGA: Recv ZSGSRD 35423
17-03-18 01:41:57.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:57.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:57.760 -07 000000501 INF: FPGA: Recv ZSGSRD 35427
17-03-18 01:41:57.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:57.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:57.770 -07 000000512 INF: FPGA: Recv ZSGSRD 35428
17-03-18 01:41:57.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:57.780 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:41:57.780 -07 000000501 INF: FPGA: Recv ZPIEZORD 31200
17-03-18 01:41:57.790 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:57.790 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.597 V. Piezo Error = -9.3 V.
17-03-18 01:41:57.790 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35424 (-167.0 uncal um), Error = 0.9 uncal um, Median = 35424 (-167.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35419 (-167.0 uncal um), Max = 35432 (-167.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:41:57.790 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35424, posNoise = 8, negNoise = 5
17-03-18 01:41:57.790 -07 000000610 INF: Z Motor: After move to -0.167897, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:41:57.790 -07 000000610 INF: Z Motor: Settle wait time = 1437 ms, measure time = 108 ms (allowed 150 ms), total time = 1545 ms
17-03-18 01:41:57.790 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:41:57.840 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-18 01:41:57.840 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:41:57.840 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.167894642920875. ----------
17-03-18 01:41:57.840 -07 000000610 INF: Cycle	90	Tile	14	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:41:57.840 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36501, sync = True, waitForSettling = True)
17-03-18 01:41:57.840 -07 000000610 INF: Z Motor: Moving to -0.167091 mm, started at -0.167895 mm, distance = 0.80 um
17-03-18 01:41:57.840 -07 000000610 INF: FPGA: Xmit ZDACW 36501\n [Z Motor]
17-03-18 01:41:57.840 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 01:41:57.850 -07 000000610 INF: FPGA: 'ZDACW 36501' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:41:57.850 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:41:57.850 -07 000000512 INF: FPGA: Recv ZDACR 36501
17-03-18 01:41:57.860 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:57.860 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:41:58.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:58.010 -07 000000501 INF: FPGA: Recv ZSGSRD 35303
17-03-18 01:41:58.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:41:58.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:58.020 -07 000000611 INF: FPGA: Recv ZSGSRD 35297
17-03-18 01:41:58.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:58.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:58.030 -07 000000437 INF: FPGA: Recv ZSGSRD 35304
17-03-18 01:41:58.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:58.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:58.040 -07 000000501 INF: FPGA: Recv ZSGSRD 35300
17-03-18 01:41:58.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:58.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:58.050 -07 000000467 INF: FPGA: Recv ZSGSRD 35304
17-03-18 01:41:58.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:58.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:58.060 -07 000000501 INF: FPGA: Recv ZSGSRD 35302
17-03-18 01:41:58.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:58.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:58.070 -07 000000611 INF: FPGA: Recv ZSGSRD 35302
17-03-18 01:41:58.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:58.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:58.080 -07 000000424 INF: FPGA: Recv ZSGSRD 35300
17-03-18 01:41:58.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:58.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:58.090 -07 000000501 INF: FPGA: Recv ZSGSRD 35298
17-03-18 01:41:58.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:58.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:41:58.100 -07 000000590 INF: FPGA: Recv ZSGSRD 35302
17-03-18 01:41:58.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:58.110 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:41:58.110 -07 000000501 INF: FPGA: Recv ZPIEZORD 31067
17-03-18 01:41:58.120 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:41:58.120 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.570 V. Piezo Error = -9.3 V.
17-03-18 01:41:58.120 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35301 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35302 (-166.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35297 (-166.2 uncal um), Max = 35304 (-166.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:41:58.120 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35301, posNoise = 3, negNoise = 4
17-03-18 01:41:58.120 -07 000000610 INF: Z Motor: After move to -0.167091, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:41:58.120 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 01:41:58.120 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:41:58.120 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:41:58.120 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:41:58.120 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:41:58.120 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:41:58.120 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:41:58.120 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:41:58.120 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:41:58.120 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:41:58.120 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:41:58.120 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:41:58.120 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:41:58.120 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:41:58.120 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:41:58.120 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:41:58.120 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:41:58.130 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:41:58.130 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:41:58.130 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:41:58.130 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:41:58.140 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36677 150\n [Camera]
17-03-18 01:41:58.340 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:41:58.730 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:41:58.730 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:41:58.730 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:41:58.730 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:41:58.730 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:41:58.730 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:41:58.740 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:41:58.740 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:41:58.740 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:41:58.740 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:41:58.920 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36677 777
17-03-18 01:41:59.070 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:41:59.110 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 01:41:59.110 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 01:41:59.110 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:59.110 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 01:41:59.110 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 01:41:59.110 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:59.120 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:41:59.120 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 01:41:59.120 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:41:59.130 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 01:41:59.260 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:41:59.260 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:41:59.260 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:41:59.260 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:41:59.260 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:41:59.270 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:41:59.270 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:41:59.270 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:41:59.270 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:41:59.270 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:41:59.450 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:41:59.450 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:41:59.450 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36677 150' command took 2 ms to send, 1308 ms to get response, and 1313 ms overall
17-03-18 01:41:59.450 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.167685
17-03-18 01:41:59.460 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.16768 mm
17-03-18 01:41:59.460 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:41:59.460 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 01:41:59.460 -07 000000512 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 01:41:59.460 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:59.460 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 36631, sync = True, waitForSettling = False)
17-03-18 01:41:59.460 -07 000000501 INF: Z Motor: Moving to -0.167686 mm, started at -0.167104 mm, distance = -0.58 um
17-03-18 01:41:59.460 -07 000000424 INF: FPGA: Recv YRDPOS 144769
17-03-18 01:41:59.470 -07 000000501 INF: FPGA: Xmit ZDACW 36631\n [Z Motor]
17-03-18 01:41:59.470 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:41:59.470 -07 000000512 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:59.470 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 01:41:59.470 -07 000000512 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:41:59.470 -07 000000512 INF: Y Motor: Moving 1351 steps-31
17-03-18 01:41:59.480 -07 000000501 INF: FPGA: 'ZDACW 36631' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:41:59.480 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:41:59.490 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:41:59.490 -07 000000611 INF: FPGA: Recv ZDACR 36631
17-03-18 01:41:59.500 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:41:59.500 -07 000000501 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-18 01:41:59.670 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:41:59.670 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:41:59.670 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:59.670 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:41:59.670 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:41:59.670 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:41:59.680 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 01:41:59.680 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 01:41:59.680 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:41:59.680 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 01:41:59.850 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 01:41:59.850 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 01:41:59.900 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:41:59.900 -07 000000467 INF: FPGA: Recv YRDPOS 146469
17-03-18 01:41:59.910 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:41:59.910 -07 000000512 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:41:59.910 -07 000000512 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 01:41:59.910 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.845 mm, average velocity = 2.201 mm/sec
17-03-18 01:42:00.860 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:00.860 -07 000000437 INF: FPGA: Recv YRDPOS 146469
17-03-18 01:42:00.870 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:00.870 -07 000000512 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:00.890 -07 000000512 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:42:00.890 -07 000000512 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:42:00.890 -07 000000512 INF: Y Motor: Moved to 71.5181 after 1432 ms (table move)
17-03-18 01:42:00.900 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167686 mm (DAC = 36631)
17-03-18 01:42:00.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:00.900 -07 000000424 INF: FPGA: Recv ZSGSRD 35391
17-03-18 01:42:00.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:00.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:00.910 -07 000000501 INF: FPGA: Recv ZSGSRD 35392
17-03-18 01:42:00.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:00.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:00.920 -07 000000467 INF: FPGA: Recv ZSGSRD 35397
17-03-18 01:42:00.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:00.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:00.930 -07 000000501 INF: FPGA: Recv ZSGSRD 35400
17-03-18 01:42:00.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:00.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:00.940 -07 000000438 INF: FPGA: Recv ZSGSRD 35389
17-03-18 01:42:00.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:00.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:00.950 -07 000000501 INF: FPGA: Recv ZSGSRD 35395
17-03-18 01:42:00.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:00.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:00.960 -07 000000424 INF: FPGA: Recv ZSGSRD 35395
17-03-18 01:42:00.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:00.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:00.970 -07 000000590 INF: FPGA: Recv ZSGSRD 35391
17-03-18 01:42:00.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:00.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:00.980 -07 000000467 INF: FPGA: Recv ZSGSRD 35391
17-03-18 01:42:00.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:00.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:00.990 -07 000000437 INF: FPGA: Recv ZSGSRD 35393
17-03-18 01:42:01.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:01.000 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:01.000 -07 000000467 INF: FPGA: Recv ZPIEZORD 31161
17-03-18 01:42:01.010 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:01.010 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.590 V. Piezo Error = -9.3 V.
17-03-18 01:42:01.010 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35393 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35392 (-166.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35389 (-166.8 uncal um), Max = 35400 (-166.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:42:01.010 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35393, posNoise = 7, negNoise = 4
17-03-18 01:42:01.010 -07 000000610 INF: Z Motor: After move to -0.167686, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:01.010 -07 000000610 INF: Z Motor: Settle wait time = 1434 ms, measure time = 110 ms (allowed 150 ms), total time = 1544 ms
17-03-18 01:42:01.010 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:42:01.050 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-18 01:42:01.050 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:42:01.050 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.167695492344481. ----------
17-03-18 01:42:01.050 -07 000000610 INF: Cycle	90	Tile	15	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:42:01.050 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36454, sync = True, waitForSettling = True)
17-03-18 01:42:01.050 -07 000000610 INF: Z Motor: Moving to -0.166876 mm, started at -0.167695 mm, distance = 0.82 um
17-03-18 01:42:01.050 -07 000000610 INF: FPGA: Xmit ZDACW 36454\n [Z Motor]
17-03-18 01:42:01.050 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 01:42:01.060 -07 000000610 INF: FPGA: 'ZDACW 36454' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:42:01.060 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:01.060 -07 000000467 INF: FPGA: Recv ZDACR 36454
17-03-18 01:42:01.070 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:01.070 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:42:01.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:01.220 -07 000000438 INF: FPGA: Recv ZSGSRD 35270
17-03-18 01:42:01.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:01.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:01.230 -07 000000501 INF: FPGA: Recv ZSGSRD 35272
17-03-18 01:42:01.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:01.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:01.240 -07 000000590 INF: FPGA: Recv ZSGSRD 35270
17-03-18 01:42:01.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:01.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:01.250 -07 000000424 INF: FPGA: Recv ZSGSRD 35273
17-03-18 01:42:01.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:01.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:01.260 -07 000000590 INF: FPGA: Recv ZSGSRD 35271
17-03-18 01:42:01.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:01.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:01.270 -07 000000467 INF: FPGA: Recv ZSGSRD 35263
17-03-18 01:42:01.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:01.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:01.280 -07 000000512 INF: FPGA: Recv ZSGSRD 35271
17-03-18 01:42:01.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:01.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:01.290 -07 000000501 INF: FPGA: Recv ZSGSRD 35267
17-03-18 01:42:01.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:01.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:01.300 -07 000000512 INF: FPGA: Recv ZSGSRD 35267
17-03-18 01:42:01.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:01.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:01.310 -07 000000424 INF: FPGA: Recv ZSGSRD 35265
17-03-18 01:42:01.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:01.320 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:01.320 -07 000000590 INF: FPGA: Recv ZPIEZORD 30977
17-03-18 01:42:01.330 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:01.330 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.563 V. Piezo Error = -9.5 V.
17-03-18 01:42:01.330 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35269 (-166.0 uncal um), Error = 0.8 uncal um, Median = 35270 (-166.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35263 (-166.0 uncal um), Max = 35273 (-166.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:42:01.330 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35269, posNoise = 4, negNoise = 6
17-03-18 01:42:01.330 -07 000000610 INF: Z Motor: After move to -0.166876, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:01.330 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 01:42:01.330 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:42:01.330 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:42:01.330 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:42:01.330 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:42:01.330 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:42:01.330 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:42:01.330 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:42:01.330 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:42:01.330 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:42:01.330 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:42:01.330 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:42:01.330 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:42:01.340 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:42:01.340 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:42:01.340 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:42:01.340 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:42:01.350 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:42:01.350 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:42:01.350 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:42:01.350 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:42:01.360 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36631 150\n [Camera]
17-03-18 01:42:01.560 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:42:01.950 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:42:01.950 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:42:01.950 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:01.950 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:42:01.950 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:42:01.950 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:01.950 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:01.950 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 01:42:01.960 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:01.960 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:42:02.140 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36631 776
17-03-18 01:42:02.280 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:42:02.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:42:02.290 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:42:02.330 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 01:42:02.330 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 01:42:02.330 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:02.440 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 482 ms.
17-03-18 01:42:02.440 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 482 ms.
17-03-18 01:42:02.440 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:02.450 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 121 ms.
17-03-18 01:42:02.450 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 499 ms.
17-03-18 01:42:02.450 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:42:02.460 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 506 ms.
17-03-18 01:42:02.480 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:42:02.480 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:42:02.480 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:02.480 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:42:02.480 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:42:02.480 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:02.480 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:02.480 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:42:02.490 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:02.490 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:42:02.670 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:42:02.670 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:42:02.670 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36631 150' command took 2 ms to send, 1304 ms to get response, and 1314 ms overall
17-03-18 01:42:02.670 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.167232
17-03-18 01:42:02.670 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.16723 mm
17-03-18 01:42:02.670 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:42:02.670 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 01:42:02.670 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 36532, sync = True, waitForSettling = False)
17-03-18 01:42:02.670 -07 000000512 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 01:42:02.670 -07 000000501 INF: Z Motor: Moving to -0.167233 mm, started at -0.166899 mm, distance = -0.33 um
17-03-18 01:42:02.670 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:02.680 -07 000000611 INF: FPGA: Recv YRDPOS 146469
17-03-18 01:42:02.680 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:42:02.680 -07 000000512 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:02.680 -07 000000512 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:42:02.680 -07 000000512 INF: Y Motor: Moving 1351 steps-30
17-03-18 01:42:02.690 -07 000000501 INF: FPGA: Xmit ZDACW 36532\n [Z Motor]
17-03-18 01:42:02.690 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:42:02.700 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:42:02.700 -07 000000501 INF: FPGA: 'ZDACW 36532' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 01:42:02.710 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:02.710 -07 000000611 INF: FPGA: Recv ZDACR 36532
17-03-18 01:42:02.720 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:42:02.730 -07 000000501 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 01:42:02.860 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 01:42:02.860 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 01:42:02.860 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:02.860 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 01:42:02.860 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 01:42:02.860 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:02.870 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:42:02.870 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 01:42:02.870 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:42:02.880 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:42:03.000 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 4.007176,
17-03-18 01:42:03.070 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 01:42:03.070 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 01:42:03.120 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:03.120 -07 000000608 INF: FPGA: Recv YRDPOS 148171
17-03-18 01:42:03.130 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:42:03.130 -07 000000512 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:03.130 -07 000000512 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:42:03.130 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.845 mm, average velocity = 2.138 mm/sec
17-03-18 01:42:04.080 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:04.080 -07 000000438 INF: FPGA: Recv YRDPOS 148171
17-03-18 01:42:04.090 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:04.090 -07 000000512 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:04.110 -07 000000512 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:42:04.110 -07 000000512 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:42:04.110 -07 000000512 INF: Y Motor: Moved to 72.3491 after 1438 ms (table move)
17-03-18 01:42:04.110 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167233 mm (DAC = 36532)
17-03-18 01:42:04.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:04.120 -07 000000438 INF: FPGA: Recv ZSGSRD 35322
17-03-18 01:42:04.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 01:42:04.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:04.120 -07 000000611 INF: FPGA: Recv ZSGSRD 35319
17-03-18 01:42:04.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:42:04.130 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:04.130 -07 000000611 INF: FPGA: Recv ZSGSRD 35325
17-03-18 01:42:04.140 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:04.140 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:04.140 -07 000000438 INF: FPGA: Recv ZSGSRD 35322
17-03-18 01:42:04.150 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:04.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:04.150 -07 000000438 INF: FPGA: Recv ZSGSRD 35323
17-03-18 01:42:04.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:04.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:04.160 -07 000000438 INF: FPGA: Recv ZSGSRD 35325
17-03-18 01:42:04.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:04.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:04.170 -07 000000438 INF: FPGA: Recv ZSGSRD 35322
17-03-18 01:42:04.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:04.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:04.180 -07 000000611 INF: FPGA: Recv ZSGSRD 35319
17-03-18 01:42:04.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:04.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:04.190 -07 000000438 INF: FPGA: Recv ZSGSRD 35322
17-03-18 01:42:04.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:04.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:04.200 -07 000000626 INF: FPGA: Recv ZSGSRD 35328
17-03-18 01:42:04.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:04.210 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:04.210 -07 000000438 INF: FPGA: Recv ZPIEZORD 31090
17-03-18 01:42:04.220 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:04.220 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.574 V. Piezo Error = -9.3 V.
17-03-18 01:42:04.220 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35323 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35322 (-166.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35319 (-166.4 uncal um), Max = 35328 (-166.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:42:04.220 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35323, posNoise = 5, negNoise = 4
17-03-18 01:42:04.220 -07 000000610 INF: Z Motor: After move to -0.167233, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:04.220 -07 000000610 INF: Z Motor: Settle wait time = 1440 ms, measure time = 101 ms (allowed 150 ms), total time = 1541 ms
17-03-18 01:42:04.220 -07 000000610 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 01:42:04.270 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-18 01:42:04.270 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:42:04.270 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.167245797494557. ----------
17-03-18 01:42:04.270 -07 000000610 INF: Cycle	90	Tile	16	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:42:04.270 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36355, sync = True, waitForSettling = True)
17-03-18 01:42:04.270 -07 000000610 INF: Z Motor: Moving to -0.166423 mm, started at -0.167246 mm, distance = 0.82 um
17-03-18 01:42:04.270 -07 000000610 INF: FPGA: Xmit ZDACW 36355\n [Z Motor]
17-03-18 01:42:04.270 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 01:42:04.280 -07 000000610 INF: FPGA: 'ZDACW 36355' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:42:04.280 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:04.280 -07 000000608 INF: FPGA: Recv ZDACR 36355
17-03-18 01:42:04.290 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:04.290 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:42:04.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:04.440 -07 000000462 INF: FPGA: Recv ZSGSRD 35201
17-03-18 01:42:04.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:04.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:04.450 -07 000000608 INF: FPGA: Recv ZSGSRD 35197
17-03-18 01:42:04.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:04.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:04.460 -07 000000501 INF: FPGA: Recv ZSGSRD 35202
17-03-18 01:42:04.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:04.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:04.470 -07 000000608 INF: FPGA: Recv ZSGSRD 35192
17-03-18 01:42:04.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:04.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:04.480 -07 000000608 INF: FPGA: Recv ZSGSRD 35196
17-03-18 01:42:04.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:04.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:04.490 -07 000000501 INF: FPGA: Recv ZSGSRD 35198
17-03-18 01:42:04.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:04.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:04.500 -07 000000608 INF: FPGA: Recv ZSGSRD 35189
17-03-18 01:42:04.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:04.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:04.510 -07 000000501 INF: FPGA: Recv ZSGSRD 35199
17-03-18 01:42:04.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:04.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:04.520 -07 000000608 INF: FPGA: Recv ZSGSRD 35196
17-03-18 01:42:04.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:04.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:04.530 -07 000000501 INF: FPGA: Recv ZSGSRD 35203
17-03-18 01:42:04.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:04.540 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:04.540 -07 000000608 INF: FPGA: Recv ZPIEZORD 30889
17-03-18 01:42:04.550 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:04.550 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.547 V. Piezo Error = -9.5 V.
17-03-18 01:42:04.550 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35197 (-165.6 uncal um), Error = 0.9 uncal um, Median = 35198 (-165.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35189 (-165.5 uncal um), Max = 35203 (-165.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:42:04.550 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35197, posNoise = 6, negNoise = 8
17-03-18 01:42:04.550 -07 000000610 INF: Z Motor: After move to -0.166423, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:04.550 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 01:42:04.550 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:42:04.550 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:42:04.550 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:42:04.550 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:42:04.550 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:42:04.550 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:42:04.550 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:42:04.550 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:42:04.550 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:42:04.550 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:42:04.550 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:42:04.550 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:42:04.550 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:42:04.550 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:42:04.560 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:42:04.560 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:42:04.570 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:42:04.570 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 01:42:04.570 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 01:42:04.570 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:42:04.570 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36532 150\n [Camera]
17-03-18 01:42:04.770 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:42:05.160 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:42:05.160 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:42:05.160 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:05.170 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:42:05.170 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:42:05.170 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:05.170 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:05.170 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:42:05.170 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:05.170 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:42:05.360 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36532 776
17-03-18 01:42:05.500 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:42:05.540 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 01:42:05.540 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 01:42:05.540 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 01:42:05.540 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:05.540 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 01:42:05.540 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:05.550 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:42:05.550 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:42:05.550 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 01:42:05.560 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 01:42:05.690 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:42:05.690 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:42:05.690 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:05.700 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:42:05.700 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:42:05.700 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:05.700 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:05.700 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-18 01:42:05.700 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:05.700 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 01:42:05.880 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:42:05.890 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:42:05.890 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36532 150' command took 2 ms to send, 1310 ms to get response, and 1313 ms overall
17-03-18 01:42:05.890 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:42:05.890 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.166436346764695. ------
17-03-18 01:42:05.890 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:42:05.890 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17288 mm
17-03-18 01:42:05.890 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:42:05.900 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:42:05.900 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:42:05.900 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:42:05.900 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 01:42:05.900 -07 000000462 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 01:42:05.900 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 37765, sync = True, waitForSettling = False)
17-03-18 01:42:05.900 -07 000000512 INF: Z Motor: Moving to -0.172877 mm, started at -0.166436 mm, distance = -6.44 um
17-03-18 01:42:05.910 -07 000000512 INF: FPGA: Xmit ZDACW 37765\n [Z Motor]
17-03-18 01:42:05.910 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:42:05.920 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:05.920 -07 000000512 INF: FPGA: 'ZDACW 37765' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:42:05.920 -07 000000467 INF: FPGA: Recv YRDPOS 148171
17-03-18 01:42:05.930 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 01:42:05.930 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:05.930 -07 000000462 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:05.930 -07 000000462 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:42:05.930 -07 000000462 INF: Y Motor: Moving 1350 steps-28
17-03-18 01:42:05.930 -07 000000611 INF: FPGA: Recv ZDACR 37765
17-03-18 01:42:05.940 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:42:05.940 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:42:05.940 -07 000000512 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 01:42:06.070 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 01:42:06.070 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 01:42:06.070 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:06.080 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 01:42:06.080 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 01:42:06.080 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:06.080 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:42:06.080 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:42:06.080 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 01:42:06.090 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:42:06.100 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:42:06.100 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:42:06.310 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 01:42:06.310 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 01:42:06.360 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:06.370 -07 000000487 INF: FPGA: Recv YRDPOS 149863
17-03-18 01:42:06.370 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:42:06.370 -07 000000462 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:06.370 -07 000000462 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 01:42:06.370 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.843 mm, average velocity = 2.180 mm/sec
17-03-18 01:42:07.280 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:42:07.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:42:07.320 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:07.320 -07 000000591 INF: FPGA: Recv YRDPOS 149863
17-03-18 01:42:07.330 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:07.330 -07 000000462 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:07.350 -07 000000462 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:42:07.350 -07 000000462 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:42:07.350 -07 000000462 INF: Y Motor: Moved to 73.1753 after 1457 ms (table move)
17-03-18 01:42:07.360 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172877 mm (DAC = 37765)
17-03-18 01:42:07.360 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:07.360 -07 000000462 INF: FPGA: Recv ZSGSRD 36200
17-03-18 01:42:07.370 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:42:07.370 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:07.370 -07 000000462 INF: FPGA: Recv ZSGSRD 36195
17-03-18 01:42:07.380 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:07.380 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:07.380 -07 000000487 INF: FPGA: Recv ZSGSRD 36203
17-03-18 01:42:07.390 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:07.390 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:07.390 -07 000000487 INF: FPGA: Recv ZSGSRD 36205
17-03-18 01:42:07.400 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:07.400 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:07.400 -07 000000487 INF: FPGA: Recv ZSGSRD 36203
17-03-18 01:42:07.410 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:07.410 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:07.410 -07 000000487 INF: FPGA: Recv ZSGSRD 36195
17-03-18 01:42:07.420 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:07.420 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:07.420 -07 000000487 INF: FPGA: Recv ZSGSRD 36195
17-03-18 01:42:07.430 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:07.430 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:07.430 -07 000000487 INF: FPGA: Recv ZSGSRD 36201
17-03-18 01:42:07.440 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:07.440 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:07.440 -07 000000591 INF: FPGA: Recv ZSGSRD 36200
17-03-18 01:42:07.450 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:07.450 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:07.450 -07 000000487 INF: FPGA: Recv ZSGSRD 36200
17-03-18 01:42:07.460 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:07.460 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:07.460 -07 000000591 INF: FPGA: Recv ZPIEZORD 32262
17-03-18 01:42:07.470 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:07.470 -07 000000626 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.763 V. Piezo Error = -8.7 V.
17-03-18 01:42:07.470 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36200 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36200 (-172.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36195 (-172.0 uncal um), Max = 36205 (-172.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:42:07.470 -07 000000626 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36200, posNoise = 5, negNoise = 5
17-03-18 01:42:07.470 -07 000000626 INF: Z Motor: After move to -0.172877, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:07.470 -07 000000626 INF: Z Motor: Settle wait time = 1460 ms, measure time = 108 ms (allowed 150 ms), total time = 1568 ms
17-03-18 01:42:07.470 -07 000000626 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:42:07.520 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 01:42:07.520 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:42:07.520 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:42:07.520 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:42:07.520 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:42:07.520 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:42:07.520 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:42:07.520 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:42:07.520 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:42:07.520 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:42:07.530 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:42:07.530 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:42:07.540 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:42:07.540 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:42:07.540 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:42:07.590 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:42:07.890 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:42:07.890 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:42:07.890 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:42:07.890 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-18 01:42:07.930 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:42:07.930 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 01:42:07.930 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 385 ms overall
17-03-18 01:42:08.020 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:42:08.020 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:08.020 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:42:08.020 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:42:08.030 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:42:08.030 -07 000000487 INF: Autofocus start
17-03-18 01:42:08.030 -07 000000487 INF: MeasureProfile start
17-03-18 01:42:08.030 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:42:08.040 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:42:08.040 -07 000000487 INF: MeasureProfile done
17-03-18 01:42:08.040 -07 000000487 INF: X=48  Z correction [um]=0.1739867
17-03-18 01:42:08.040 -07 000000487 INF: Autofocus finished
17-03-18 01:42:08.050 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:42:08.250 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:42:08.250 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 01:42:08.250 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.172879831542882. ----------
17-03-18 01:42:08.250 -07 000000610 INF: Cycle	90	Tile	17	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:42:08.260 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36316, sync = True, waitForSettling = True)
17-03-18 01:42:08.260 -07 000000610 INF: Z Motor: Moving to -0.166244 mm, started at -0.172880 mm, distance = 6.64 um
17-03-18 01:42:08.260 -07 000000610 INF: FPGA: Xmit ZDACW 36316\n [Z Motor]
17-03-18 01:42:08.260 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 01:42:08.270 -07 000000610 INF: FPGA: 'ZDACW 36316' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:42:08.270 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:08.270 -07 000000591 INF: FPGA: Recv ZDACR 36316
17-03-18 01:42:08.280 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:08.280 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:42:08.360 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 4.012614,
17-03-18 01:42:08.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:08.430 -07 000000590 INF: FPGA: Recv ZSGSRD 35168
17-03-18 01:42:08.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:08.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:08.440 -07 000000591 INF: FPGA: Recv ZSGSRD 35175
17-03-18 01:42:08.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:08.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:08.450 -07 000000502 INF: FPGA: Recv ZSGSRD 35168
17-03-18 01:42:08.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:08.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:08.460 -07 000000591 INF: FPGA: Recv ZSGSRD 35171
17-03-18 01:42:08.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:08.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:08.470 -07 000000487 INF: FPGA: Recv ZSGSRD 35166
17-03-18 01:42:08.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:08.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:08.480 -07 000000590 INF: FPGA: Recv ZSGSRD 35172
17-03-18 01:42:08.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:08.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:08.490 -07 000000626 INF: FPGA: Recv ZSGSRD 35174
17-03-18 01:42:08.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:08.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:08.500 -07 000000591 INF: FPGA: Recv ZSGSRD 35169
17-03-18 01:42:08.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:08.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:08.510 -07 000000502 INF: FPGA: Recv ZSGSRD 35169
17-03-18 01:42:08.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:08.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:08.520 -07 000000462 INF: FPGA: Recv ZSGSRD 35163
17-03-18 01:42:08.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:08.530 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:08.530 -07 000000626 INF: FPGA: Recv ZPIEZORD 30874
17-03-18 01:42:08.540 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:08.540 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.541 V. Piezo Error = -9.5 V.
17-03-18 01:42:08.540 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35170 (-165.4 uncal um), Error = 0.8 uncal um, Median = 35169 (-165.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35163 (-165.4 uncal um), Max = 35175 (-165.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:42:08.540 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35170, posNoise = 5, negNoise = 7
17-03-18 01:42:08.540 -07 000000610 INF: Z Motor: After move to -0.166244, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:08.540 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:42:08.540 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:42:08.540 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:42:08.540 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:42:08.540 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:42:08.540 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:42:08.540 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:42:08.540 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:42:08.540 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:42:08.540 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:42:08.540 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:42:08.540 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:42:08.540 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:42:08.550 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:42:08.550 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:42:08.550 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:42:08.550 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:42:08.560 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:42:08.560 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:42:08.560 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:42:08.560 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:42:08.570 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36493 150\n [Camera]
17-03-18 01:42:08.760 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:42:09.160 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:42:09.160 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:42:09.160 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:09.160 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:09.160 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1445873368, 0x0, 391868352) start.
17-03-18 01:42:09.160 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:42:09.160 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:42:09.160 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:09.160 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:09.160 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1481295632, 0x0, 418435064) start.
17-03-18 01:42:09.350 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36493 776
17-03-18 01:42:09.500 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:42:09.540 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1445873368, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 01:42:09.540 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 01:42:09.540 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:09.550 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:09.550 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 01:42:09.670 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1481295632, 0x0, 418435064) end. Duration was 505 ms.
17-03-18 01:42:09.670 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 505 ms.
17-03-18 01:42:09.670 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:09.670 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:09.680 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-18 01:42:09.690 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:42:09.690 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:42:09.690 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:09.690 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:42:09.690 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:42:09.690 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:09.700 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:09.700 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:42:09.700 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:09.700 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:42:09.880 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:42:09.880 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:42:09.880 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36493 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-18 01:42:09.880 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.166698
17-03-18 01:42:09.880 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.16670 mm
17-03-18 01:42:09.880 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:42:09.880 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 01:42:09.880 -07 000000626 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 01:42:09.880 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:09.880 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 36415, sync = True, waitForSettling = False)
17-03-18 01:42:09.880 -07 000000591 INF: Z Motor: Moving to -0.166697 mm, started at -0.166263 mm, distance = -0.43 um
17-03-18 01:42:09.890 -07 000000591 INF: FPGA: Xmit ZDACW 36415\n [Z Motor]
17-03-18 01:42:09.890 -07 000000424 INF: FPGA: Recv YRDPOS 149864
17-03-18 01:42:09.890 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:42:09.890 -07 000000626 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:09.890 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 01:42:09.890 -07 000000626 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:42:09.890 -07 000000626 INF: Y Motor: Moving 1355 steps-35
17-03-18 01:42:09.900 -07 000000591 INF: FPGA: 'ZDACW 36415' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:09.900 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:09.900 -07 000000462 INF: FPGA: Recv ZDACR 36415
17-03-18 01:42:09.910 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:42:09.910 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:09.910 -07 000000591 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 01:42:10.070 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 01:42:10.070 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 01:42:10.070 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:10.070 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 01:42:10.070 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 01:42:10.070 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:10.080 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:42:10.080 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 01:42:10.080 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:42:10.090 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:42:10.280 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 01:42:10.280 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-18 01:42:10.320 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:10.330 -07 000000462 INF: FPGA: Recv YRDPOS 151567
17-03-18 01:42:10.330 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:42:10.330 -07 000000626 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:10.330 -07 000000626 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 01:42:10.330 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.847 mm, average velocity = 2.173 mm/sec
17-03-18 01:42:11.280 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:11.280 -07 000000590 INF: FPGA: Recv YRDPOS 151568
17-03-18 01:42:11.290 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:11.290 -07 000000626 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:11.300 -07 000000626 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:42:11.310 -07 000000626 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:42:11.310 -07 000000626 INF: Y Motor: Moved to 74.0078 after 1421 ms (table move)
17-03-18 01:42:11.310 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.166697 mm (DAC = 36415)
17-03-18 01:42:11.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:11.310 -07 000000591 INF: FPGA: Recv ZSGSRD 35241
17-03-18 01:42:11.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:42:11.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:11.320 -07 000000591 INF: FPGA: Recv ZSGSRD 35234
17-03-18 01:42:11.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:11.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:11.330 -07 000000591 INF: FPGA: Recv ZSGSRD 35241
17-03-18 01:42:11.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:11.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:11.340 -07 000000626 INF: FPGA: Recv ZSGSRD 35245
17-03-18 01:42:11.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:11.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:11.350 -07 000000502 INF: FPGA: Recv ZSGSRD 35244
17-03-18 01:42:11.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:11.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:11.360 -07 000000590 INF: FPGA: Recv ZSGSRD 35246
17-03-18 01:42:11.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:11.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:11.370 -07 000000590 INF: FPGA: Recv ZSGSRD 35245
17-03-18 01:42:11.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:11.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:11.380 -07 000000590 INF: FPGA: Recv ZSGSRD 35239
17-03-18 01:42:11.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:11.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:11.390 -07 000000502 INF: FPGA: Recv ZSGSRD 35238
17-03-18 01:42:11.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:11.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:11.400 -07 000000502 INF: FPGA: Recv ZSGSRD 35240
17-03-18 01:42:11.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:11.410 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:11.410 -07 000000502 INF: FPGA: Recv ZPIEZORD 31015
17-03-18 01:42:11.420 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:11.420 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.557 V. Piezo Error = -9.3 V.
17-03-18 01:42:11.420 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35241 (-165.9 uncal um), Error = 0.8 uncal um, Median = 35241 (-165.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35234 (-165.8 uncal um), Max = 35246 (-165.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:42:11.420 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35241, posNoise = 5, negNoise = 7
17-03-18 01:42:11.420 -07 000000610 INF: Z Motor: After move to -0.166697, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:11.420 -07 000000610 INF: Z Motor: Settle wait time = 1422 ms, measure time = 109 ms (allowed 150 ms), total time = 1531 ms
17-03-18 01:42:11.420 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:42:11.470 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-18 01:42:11.470 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:42:11.470 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.166719012098933. ----------
17-03-18 01:42:11.470 -07 000000610 INF: Cycle	90	Tile	18	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:42:11.470 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36238, sync = True, waitForSettling = True)
17-03-18 01:42:11.470 -07 000000610 INF: Z Motor: Moving to -0.165887 mm, started at -0.166719 mm, distance = 0.83 um
17-03-18 01:42:11.470 -07 000000610 INF: FPGA: Xmit ZDACW 36238\n [Z Motor]
17-03-18 01:42:11.470 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 01:42:11.480 -07 000000610 INF: FPGA: 'ZDACW 36238' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:42:11.480 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:11.480 -07 000000502 INF: FPGA: Recv ZDACR 36238
17-03-18 01:42:11.490 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:11.490 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:42:11.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:11.640 -07 000000502 INF: FPGA: Recv ZSGSRD 35119
17-03-18 01:42:11.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:11.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:11.650 -07 000000590 INF: FPGA: Recv ZSGSRD 35112
17-03-18 01:42:11.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:11.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:11.660 -07 000000502 INF: FPGA: Recv ZSGSRD 35111
17-03-18 01:42:11.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:11.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:11.670 -07 000000590 INF: FPGA: Recv ZSGSRD 35118
17-03-18 01:42:11.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:11.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:11.680 -07 000000502 INF: FPGA: Recv ZSGSRD 35113
17-03-18 01:42:11.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:11.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:11.690 -07 000000502 INF: FPGA: Recv ZSGSRD 35118
17-03-18 01:42:11.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:11.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:11.700 -07 000000502 INF: FPGA: Recv ZSGSRD 35107
17-03-18 01:42:11.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:11.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:11.710 -07 000000590 INF: FPGA: Recv ZSGSRD 35115
17-03-18 01:42:11.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:11.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:11.720 -07 000000590 INF: FPGA: Recv ZSGSRD 35116
17-03-18 01:42:11.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:11.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:11.730 -07 000000502 INF: FPGA: Recv ZSGSRD 35107
17-03-18 01:42:11.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:11.740 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:11.740 -07 000000590 INF: FPGA: Recv ZPIEZORD 30835
17-03-18 01:42:11.750 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:11.750 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.530 V. Piezo Error = -9.4 V.
17-03-18 01:42:11.750 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.9 um, Read 10 ADC samples: Avg = 35114 (-165.0 uncal um), Error = 0.8 uncal um, Median = 35114 (-165.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35107 (-165.0 uncal um), Max = 35119 (-165.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:42:11.750 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35114, posNoise = 5, negNoise = 7
17-03-18 01:42:11.750 -07 000000610 INF: Z Motor: After move to -0.165887, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:11.750 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 01:42:11.750 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:42:11.750 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:42:11.750 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:42:11.750 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:42:11.750 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:42:11.750 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:42:11.750 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:42:11.750 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:42:11.750 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:42:11.750 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:42:11.750 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:42:11.750 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:42:11.760 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:42:11.760 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:42:11.760 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:42:11.760 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:42:11.770 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:42:11.770 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:42:11.770 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:42:11.770 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:42:11.770 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36415 150\n [Camera]
17-03-18 01:42:11.970 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:42:12.280 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:42:12.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:42:12.360 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:42:12.360 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:42:12.360 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:12.360 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:42:12.360 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:42:12.360 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:12.370 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:12.370 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:42:12.370 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:12.370 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:42:12.550 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36415 776
17-03-18 01:42:12.700 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:42:12.760 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 01:42:12.760 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 01:42:12.760 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:12.760 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 01:42:12.760 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 01:42:12.760 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:12.760 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:12.760 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:42:12.760 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:12.770 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 01:42:12.890 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:42:12.890 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:42:12.890 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:12.890 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:42:12.890 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:42:12.900 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:13.010 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:13.010 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 01:42:13.010 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:13.010 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 01:42:13.080 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:42:13.080 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:42:13.080 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36415 150' command took 2 ms to send, 1308 ms to get response, and 1313 ms overall
17-03-18 01:42:13.080 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.165850
17-03-18 01:42:13.090 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.16585 mm
17-03-18 01:42:13.090 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:42:13.090 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 01:42:13.090 -07 000000502 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 01:42:13.090 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:13.090 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 36230, sync = True, waitForSettling = False)
17-03-18 01:42:13.090 -07 000000424 INF: Z Motor: Moving to -0.165850 mm, started at -0.165903 mm, distance = 0.05 um
17-03-18 01:42:13.090 -07 000000467 INF: FPGA: Recv YRDPOS 151568
17-03-18 01:42:13.100 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:42:13.100 -07 000000502 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:13.100 -07 000000502 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:42:13.100 -07 000000502 INF: Y Motor: Moving 1352 steps-31
17-03-18 01:42:13.100 -07 000000424 INF: FPGA: Xmit ZDACW 36230\n [Z Motor]
17-03-18 01:42:13.100 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:42:13.110 -07 000000424 INF: FPGA: 'ZDACW 36230' command took 1 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:42:13.110 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:13.110 -07 000000461 INF: FPGA: Recv ZDACR 36230
17-03-18 01:42:13.120 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:42:13.120 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:13.120 -07 000000424 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-18 01:42:13.390 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 01:42:13.390 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 01:42:13.390 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:13.390 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:13.400 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 01:42:13.400 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 01:42:13.400 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:13.400 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:13.400 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 509 ms.
17-03-18 01:42:13.400 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 506 ms.
17-03-18 01:42:13.490 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 01:42:13.490 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:42:13.520 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:13.530 -07 000000467 INF: FPGA: Recv YRDPOS 153254
17-03-18 01:42:13.530 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-18 01:42:13.530 -07 000000502 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:13.530 -07 000000502 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 01:42:13.530 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-18 01:42:13.720 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 3.99219,
17-03-18 01:42:14.480 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:14.480 -07 000000437 INF: FPGA: Recv YRDPOS 153254
17-03-18 01:42:14.490 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:14.490 -07 000000502 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:14.500 -07 000000502 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:42:14.500 -07 000000502 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:42:14.500 -07 000000502 INF: Y Motor: Moved to 74.8311 after 1414 ms (table move)
17-03-18 01:42:14.510 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.165850 mm (DAC = 36230)
17-03-18 01:42:14.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:14.510 -07 000000502 INF: FPGA: Recv ZSGSRD 35113
17-03-18 01:42:14.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:14.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:14.520 -07 000000438 INF: FPGA: Recv ZSGSRD 35103
17-03-18 01:42:14.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:14.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:15.210 -07 000000608 INF: FPGA: Recv ZSGSRD 35105
17-03-18 01:42:15.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 676 ms to get response, and 685 ms overall
17-03-18 01:42:15.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:15.220 -07 000000590 INF: FPGA: Recv ZSGSRD 35107
17-03-18 01:42:15.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:42:15.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:15.230 -07 000000608 INF: FPGA: Recv ZSGSRD 35108
17-03-18 01:42:15.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:15.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:15.240 -07 000000424 INF: FPGA: Recv ZSGSRD 35108
17-03-18 01:42:15.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:42:15.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:15.250 -07 000000438 INF: FPGA: Recv ZSGSRD 35103
17-03-18 01:42:15.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:15.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:15.260 -07 000000611 INF: FPGA: Recv ZSGSRD 35106
17-03-18 01:42:15.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:15.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:15.270 -07 000000512 INF: FPGA: Recv ZSGSRD 35115
17-03-18 01:42:15.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:15.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:15.280 -07 000000611 INF: FPGA: Recv ZSGSRD 35104
17-03-18 01:42:15.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:15.290 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:15.290 -07 000000502 INF: FPGA: Recv ZPIEZORD 30867
17-03-18 01:42:15.300 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:15.300 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.528 V. Piezo Error = -9.3 V.
17-03-18 01:42:15.300 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.9 um, Read 10 ADC samples: Avg = 35107 (-165.0 uncal um), Error = 0.9 uncal um, Median = 35106 (-165.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35103 (-165.0 uncal um), Max = 35115 (-165.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:42:15.300 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35107, posNoise = 8, negNoise = 4
17-03-18 01:42:15.300 -07 000000610 INF: Z Motor: After move to -0.165850, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:15.300 -07 000000610 INF: Z Motor: Settle wait time = 1416 ms, measure time = 790 ms (allowed 150 ms), total time = 2206 ms
17-03-18 01:42:15.300 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 790 ms, longer than max expected time of 150 ms
17-03-18 01:42:15.300 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2210 ms
17-03-18 01:42:15.300 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:42:15.300 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.165858167671937. ----------
17-03-18 01:42:15.300 -07 000000610 INF: Cycle	90	Tile	19	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:42:15.300 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36053, sync = True, waitForSettling = True)
17-03-18 01:42:15.300 -07 000000610 INF: Z Motor: Moving to -0.165040 mm, started at -0.165858 mm, distance = 0.82 um
17-03-18 01:42:15.300 -07 000000610 INF: FPGA: Xmit ZDACW 36053\n [Z Motor]
17-03-18 01:42:15.300 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:42:15.310 -07 000000610 INF: FPGA: 'ZDACW 36053' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:42:15.310 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:15.310 -07 000000501 INF: FPGA: Recv ZDACR 36053
17-03-18 01:42:15.320 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:15.320 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:42:15.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:15.470 -07 000000611 INF: FPGA: Recv ZSGSRD 34984
17-03-18 01:42:15.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:15.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:15.480 -07 000000608 INF: FPGA: Recv ZSGSRD 34984
17-03-18 01:42:15.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:15.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:15.490 -07 000000608 INF: FPGA: Recv ZSGSRD 34976
17-03-18 01:42:15.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:15.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:15.500 -07 000000501 INF: FPGA: Recv ZSGSRD 34979
17-03-18 01:42:15.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:15.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:15.510 -07 000000461 INF: FPGA: Recv ZSGSRD 34981
17-03-18 01:42:15.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:15.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:15.520 -07 000000461 INF: FPGA: Recv ZSGSRD 34987
17-03-18 01:42:15.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:15.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:15.530 -07 000000502 INF: FPGA: Recv ZSGSRD 34976
17-03-18 01:42:15.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:15.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:15.540 -07 000000438 INF: FPGA: Recv ZSGSRD 34979
17-03-18 01:42:15.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:15.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:15.550 -07 000000512 INF: FPGA: Recv ZSGSRD 34980
17-03-18 01:42:15.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:15.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:15.560 -07 000000424 INF: FPGA: Recv ZSGSRD 34983
17-03-18 01:42:15.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:15.570 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:15.570 -07 000000512 INF: FPGA: Recv ZPIEZORD 30685
17-03-18 01:42:15.580 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:15.580 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.501 V. Piezo Error = -9.5 V.
17-03-18 01:42:15.580 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.0 um, Read 10 ADC samples: Avg = 34981 (-164.2 uncal um), Error = 0.9 uncal um, Median = 34980 (-164.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 34976 (-164.2 uncal um), Max = 34987 (-164.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:42:15.580 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34981, posNoise = 6, negNoise = 5
17-03-18 01:42:15.580 -07 000000610 INF: Z Motor: After move to -0.165040, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:15.580 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 01:42:15.580 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:42:15.580 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:42:15.580 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:42:15.580 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:42:15.580 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:42:15.580 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:42:15.580 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:42:15.580 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:42:15.580 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:42:15.580 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:42:15.580 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:42:15.580 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:42:15.590 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:42:15.590 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:42:15.590 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:42:15.590 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:42:15.590 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:42:15.590 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:42:15.600 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:42:15.600 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:42:15.600 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36230 150\n [Camera]
17-03-18 01:42:15.800 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:42:16.190 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:42:16.190 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:42:16.190 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:16.190 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:42:16.190 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:42:16.190 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:16.190 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:16.190 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:42:16.200 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:16.200 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:42:16.380 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36230 776
17-03-18 01:42:16.530 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:42:16.590 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 01:42:16.590 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:42:16.590 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:16.590 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 01:42:16.590 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:42:16.590 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:16.590 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:42:16.590 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:42:16.590 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:16.600 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 01:42:16.720 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:42:16.720 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:42:16.720 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:16.720 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:42:16.720 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:42:16.720 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:16.720 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:16.720 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) start.
17-03-18 01:42:16.720 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:16.720 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 01:42:16.910 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:42:16.910 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:42:16.910 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36230 150' command took 2 ms to send, 1305 ms to get response, and 1313 ms overall
17-03-18 01:42:17.120 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:42:17.120 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:42:17.120 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:17.130 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:17.130 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 01:42:17.130 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 01:42:17.130 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 01:42:17.130 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 01:42:17.130 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:17.130 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:17.140 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 01:42:17.170 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 01:42:17.170 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 01:42:17.210 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 43 ms.
17-03-18 01:42:17.220 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 01:42:17.220 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 01:42:17.220 -07 000000461 INF: FPGA: Recv EMCUR 
17-03-18 01:42:17.230 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:42:17.230 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 01:42:17.280 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:42:17.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:42:17.730 -07 000000608 INF: FPGA: Recv EMIN
17-03-18 01:42:17.730 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 01:42:17.730 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 01:42:17.730 -07 000000501 INF: FPGA: Recv EMCUR 
17-03-18 01:42:17.740 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:42:17.740 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:42:17.740 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8310546875, Z-Position -0.165048716942075. ------
17-03-18 01:42:17.740 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:42:17.740 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13967 mm
17-03-18 01:42:17.740 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:42:17.740 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 01:42:17.740 -07 000000502 INF: Y Motor: Moving to 59.9126 mm, started at 74.8311 mm, delta = -14.9184 mm
17-03-18 01:42:17.740 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:42:17.750 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:42:17.750 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30510, sync = True, waitForSettling = False)
17-03-18 01:42:17.750 -07 000000608 INF: Z Motor: Moving to -0.139666 mm, started at -0.165049 mm, distance = 25.38 um
17-03-18 01:42:17.750 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:17.750 -07 000000590 INF: FPGA: Recv YRDPOS 153255
17-03-18 01:42:17.760 -07 000000502 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:42:17.760 -07 000000502 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:17.760 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:42:17.760 -07 000000502 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 01:42:17.760 -07 000000502 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 01:42:17.770 -07 000000608 INF: FPGA: Xmit ZDACW 30510\n [Z Motor]
17-03-18 01:42:17.770 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 01:42:17.780 -07 000000608 INF: FPGA: 'ZDACW 30510' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 01:42:17.780 -07 000000502 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 01:42:17.790 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:17.790 -07 000000461 INF: FPGA: Recv ZDACR 30510
17-03-18 01:42:17.800 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:42:17.800 -07 000000608 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 01:42:17.960 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:42:17.960 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 01:42:19.080 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 3.978563,
17-03-18 01:42:19.400 -07 000000590 INF: FPGA: Recv YMVTO 122703 23904
17-03-18 01:42:19.400 -07 000000502 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1619 ms to get response, and 1642 ms overall
17-03-18 01:42:19.400 -07 000000502 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 01:42:19.400 -07 000000502 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23870 steps, but required 23904 steps (14.940 mm). Slippage = 0.021 mm (0.00%).
17-03-18 01:42:19.400 -07 000000502 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1642 ms, distance = 14.918 mm, average velocity = 9.086 mm/sec
17-03-18 01:42:22.250 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:22.250 -07 000000591 INF: FPGA: Recv YRDPOS 122697
17-03-18 01:42:22.260 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:22.260 -07 000000502 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:22.280 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:42:22.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:42:22.290 -07 000000502 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:42:22.290 -07 000000502 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 01:42:22.290 -07 000000502 INF: Y Motor: Moved to 59.9106 after 4547 ms
17-03-18 01:42:22.300 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139666 mm (DAC = 30510)
17-03-18 01:42:22.300 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:22.300 -07 000000590 INF: FPGA: Recv ZSGSRD 31034
17-03-18 01:42:22.310 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:22.310 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:22.310 -07 000000461 INF: FPGA: Recv ZSGSRD 31031
17-03-18 01:42:22.320 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:22.320 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:22.320 -07 000000590 INF: FPGA: Recv ZSGSRD 31031
17-03-18 01:42:22.330 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:22.330 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:22.330 -07 000000461 INF: FPGA: Recv ZSGSRD 31027
17-03-18 01:42:22.340 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:22.340 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:22.340 -07 000000461 INF: FPGA: Recv ZSGSRD 31029
17-03-18 01:42:22.350 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:22.350 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:22.350 -07 000000591 INF: FPGA: Recv ZSGSRD 31026
17-03-18 01:42:22.360 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:22.360 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:22.360 -07 000000591 INF: FPGA: Recv ZSGSRD 31033
17-03-18 01:42:22.370 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:22.370 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:22.370 -07 000000461 INF: FPGA: Recv ZSGSRD 31032
17-03-18 01:42:22.380 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:22.380 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:22.380 -07 000000591 INF: FPGA: Recv ZSGSRD 31030
17-03-18 01:42:22.390 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:22.390 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:22.390 -07 000000611 INF: FPGA: Recv ZSGSRD 31030
17-03-18 01:42:22.400 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:22.400 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:22.400 -07 000000591 INF: FPGA: Recv ZPIEZORD 26538
17-03-18 01:42:22.410 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:22.410 -07 000000438 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.656 V. Piezo Error = -9.9 V.
17-03-18 01:42:22.410 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.7 um, Read 10 ADC samples: Avg = 31030 (-138.9 uncal um), Error = 0.8 uncal um, Median = 31030 (-138.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 31026 (-138.8 uncal um), Max = 31034 (-138.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:42:22.410 -07 000000438 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31030, posNoise = 4, negNoise = 4
17-03-18 01:42:22.410 -07 000000438 INF: Z Motor: After move to -0.139666, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:22.410 -07 000000438 INF: Z Motor: Settle wait time = 4548 ms, measure time = 111 ms (allowed 150 ms), total time = 4659 ms
17-03-18 01:42:22.410 -07 000000438 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:42:22.450 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4704 ms
17-03-18 01:42:22.450 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:42:22.450 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:42:22.450 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:42:22.450 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:42:22.450 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:42:22.450 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:42:22.450 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:42:22.450 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:42:22.450 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 01:42:22.470 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 19 ms.
17-03-18 01:42:22.470 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:42:22.480 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:42:22.480 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:42:22.480 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:42:22.480 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms.
17-03-18 01:42:22.490 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:42:22.530 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:42:22.830 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:42:22.830 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:42:22.830 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:42:22.830 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-18 01:42:22.870 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:42:22.870 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 01:42:22.870 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 01:42:22.950 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:42:22.950 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:22.950 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:42:22.950 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:42:22.970 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:42:22.970 -07 000000590 INF: Image SNR check: start
17-03-18 01:42:22.970 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:42:22.980 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:42:22.980 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:42:22.990 -07 000000590 INF: Image SNR check: pass  [peak (Max-Min)=135.15]
17-03-18 01:42:22.990 -07 000000590 INF: Autofocus start
17-03-18 01:42:22.990 -07 000000590 INF: MeasureProfile start
17-03-18 01:42:23.000 -07 000000590 INF: MeasureProfile done
17-03-18 01:42:23.000 -07 000000590 INF: X=48  Z correction [um]=0.2069503
17-03-18 01:42:23.000 -07 000000590 INF: Autofocus finished
17-03-18 01:42:23.180 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:42:23.180 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:42:23.180 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.139666654769978. ----------
17-03-18 01:42:23.180 -07 000000610 INF: Cycle	90	Tile	1	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:42:23.190 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29068, sync = True, waitForSettling = True)
17-03-18 01:42:23.190 -07 000000610 INF: Z Motor: Moving to -0.133065 mm, started at -0.139667 mm, distance = 6.60 um
17-03-18 01:42:23.190 -07 000000610 INF: FPGA: Xmit ZDACW 29068\n [Z Motor]
17-03-18 01:42:23.190 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:42:23.200 -07 000000610 INF: FPGA: 'ZDACW 29068' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:42:23.200 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:23.200 -07 000000438 INF: FPGA: Recv ZDACR 29068
17-03-18 01:42:23.210 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:23.210 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:42:23.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:23.360 -07 000000461 INF: FPGA: Recv ZSGSRD 30007
17-03-18 01:42:23.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:23.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:23.370 -07 000000611 INF: FPGA: Recv ZSGSRD 29998
17-03-18 01:42:23.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:23.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:23.380 -07 000000424 INF: FPGA: Recv ZSGSRD 29996
17-03-18 01:42:23.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:23.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:23.390 -07 000000424 INF: FPGA: Recv ZSGSRD 30003
17-03-18 01:42:23.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:23.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:23.400 -07 000000424 INF: FPGA: Recv ZSGSRD 30002
17-03-18 01:42:23.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:23.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:23.410 -07 000000462 INF: FPGA: Recv ZSGSRD 30006
17-03-18 01:42:23.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:23.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:23.430 -07 000000461 INF: FPGA: Recv ZSGSRD 30005
17-03-18 01:42:23.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:42:23.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:23.440 -07 000000591 INF: FPGA: Recv ZSGSRD 30003
17-03-18 01:42:23.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:23.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:23.450 -07 000000591 INF: FPGA: Recv ZSGSRD 29995
17-03-18 01:42:23.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:23.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:23.460 -07 000000502 INF: FPGA: Recv ZSGSRD 30001
17-03-18 01:42:23.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:23.470 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:23.470 -07 000000591 INF: FPGA: Recv ZPIEZORD 25420
17-03-18 01:42:23.480 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:23.480 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.435 V. Piezo Error = -10.1 V.
17-03-18 01:42:23.480 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30002 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30002 (-132.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29995 (-132.2 uncal um), Max = 30007 (-132.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:42:23.480 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30002, posNoise = 5, negNoise = 7
17-03-18 01:42:23.480 -07 000000610 INF: Z Motor: After move to -0.133065, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:23.480 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 01:42:23.480 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:42:23.480 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:42:23.480 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:42:23.480 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:42:23.480 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:42:23.480 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:42:23.480 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:42:23.480 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:42:23.480 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:42:23.480 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:42:23.480 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:42:23.480 -07 000000591 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 01:42:23.490 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:42:23.490 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:42:23.500 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 01:42:23.500 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 01:42:23.500 -07 000000591 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 01:42:23.510 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:42:23.510 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:42:23.510 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:42:23.520 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 01:42:23.520 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 34 ms.
17-03-18 01:42:23.520 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 29245 150\n [Camera]
17-03-18 01:42:23.720 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:42:24.110 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:42:24.110 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:42:24.110 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:24.120 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:24.120 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1462748432, 0x0, 391868352) start.
17-03-18 01:42:24.120 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:42:24.120 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:42:24.120 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:24.230 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:24.230 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 01:42:24.310 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29245 776
17-03-18 01:42:24.460 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:42:24.510 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1462748432, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 01:42:24.510 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 01:42:24.510 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:24.510 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:24.510 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:42:24.540 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 3.993549,
17-03-18 01:42:24.620 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 01:42:24.620 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 01:42:24.620 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:24.630 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:24.630 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 513 ms.
17-03-18 01:42:24.650 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:42:24.650 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:42:24.650 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:24.650 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:42:24.650 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:42:24.650 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:24.650 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:24.650 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:42:24.660 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:24.660 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) start.
17-03-18 01:42:24.840 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:42:24.840 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:42:24.840 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 29245 150' command took 4 ms to send, 1312 ms to get response, and 1317 ms overall
17-03-18 01:42:24.840 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.133328
17-03-18 01:42:24.840 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13333 mm
17-03-18 01:42:24.840 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:42:24.840 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 01:42:24.840 -07 000000502 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-18 01:42:24.840 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:24.840 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 29126, sync = True, waitForSettling = False)
17-03-18 01:42:24.840 -07 000000437 INF: Z Motor: Moving to -0.133330 mm, started at -0.133063 mm, distance = -0.27 um
17-03-18 01:42:24.840 -07 000000438 INF: FPGA: Recv YRDPOS 122697
17-03-18 01:42:24.850 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:42:24.850 -07 000000437 INF: FPGA: Xmit ZDACW 29126\n [Z Motor]
17-03-18 01:42:24.850 -07 000000502 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:24.850 -07 000000502 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:42:24.850 -07 000000502 INF: Y Motor: Moving 1331 steps2
17-03-18 01:42:24.850 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 01:42:24.860 -07 000000437 INF: FPGA: 'ZDACW 29126' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:42:24.860 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:24.860 -07 000000467 INF: FPGA: Recv ZDACR 29126
17-03-18 01:42:24.870 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:24.870 -07 000000437 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-18 01:42:24.870 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:42:25.050 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:42:25.050 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:42:25.050 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:25.050 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:25.050 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 01:42:25.060 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:42:25.060 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:42:25.060 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:25.060 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:25.070 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 01:42:25.240 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 01:42:25.240 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:42:25.280 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:25.280 -07 000000591 INF: FPGA: Recv YRDPOS 124380
17-03-18 01:42:25.290 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:42:25.290 -07 000000502 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:25.290 -07 000000502 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 01:42:25.290 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.096 mm/sec
17-03-18 01:42:26.240 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:26.240 -07 000000461 INF: FPGA: Recv YRDPOS 124381
17-03-18 01:42:26.250 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:26.250 -07 000000502 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:26.270 -07 000000502 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:42:26.270 -07 000000502 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:42:26.270 -07 000000502 INF: Y Motor: Moved to 60.7329 after 1432 ms (table move)
17-03-18 01:42:26.280 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133330 mm (DAC = 29126)
17-03-18 01:42:26.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:26.280 -07 000000512 INF: FPGA: Recv ZSGSRD 30044
17-03-18 01:42:26.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:26.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:26.290 -07 000000608 INF: FPGA: Recv ZSGSRD 30048
17-03-18 01:42:26.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:26.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:26.300 -07 000000590 INF: FPGA: Recv ZSGSRD 30050
17-03-18 01:42:26.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:26.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:26.310 -07 000000502 INF: FPGA: Recv ZSGSRD 30044
17-03-18 01:42:26.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:26.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:26.320 -07 000000487 INF: FPGA: Recv ZSGSRD 30048
17-03-18 01:42:26.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:26.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:26.330 -07 000000512 INF: FPGA: Recv ZSGSRD 30047
17-03-18 01:42:26.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:26.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:26.340 -07 000000512 INF: FPGA: Recv ZSGSRD 30042
17-03-18 01:42:26.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:26.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:26.350 -07 000000512 INF: FPGA: Recv ZSGSRD 30042
17-03-18 01:42:26.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:26.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:26.360 -07 000000487 INF: FPGA: Recv ZSGSRD 30044
17-03-18 01:42:26.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:26.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:26.370 -07 000000611 INF: FPGA: Recv ZSGSRD 30049
17-03-18 01:42:26.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:26.380 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:26.380 -07 000000611 INF: FPGA: Recv ZPIEZORD 25530
17-03-18 01:42:26.390 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:26.390 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.444 V. Piezo Error = -9.9 V.
17-03-18 01:42:26.390 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30046 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30046 (-132.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30042 (-132.5 uncal um), Max = 30050 (-132.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:42:26.390 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30046, posNoise = 4, negNoise = 4
17-03-18 01:42:26.390 -07 000000610 INF: Z Motor: After move to -0.133330, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:26.390 -07 000000610 INF: Z Motor: Settle wait time = 1434 ms, measure time = 109 ms (allowed 150 ms), total time = 1543 ms
17-03-18 01:42:26.390 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:42:26.440 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-18 01:42:26.440 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:42:26.440 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.133345230022485. ----------
17-03-18 01:42:26.440 -07 000000610 INF: Cycle	90	Tile	2	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:42:26.440 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28949, sync = True, waitForSettling = True)
17-03-18 01:42:26.440 -07 000000610 INF: Z Motor: Moving to -0.132520 mm, started at -0.133345 mm, distance = 0.83 um
17-03-18 01:42:26.440 -07 000000610 INF: FPGA: Xmit ZDACW 28949\n [Z Motor]
17-03-18 01:42:26.440 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 01:42:26.450 -07 000000610 INF: FPGA: 'ZDACW 28949' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:42:26.450 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:26.450 -07 000000461 INF: FPGA: Recv ZDACR 28949
17-03-18 01:42:26.460 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:26.460 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:42:26.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:26.610 -07 000000461 INF: FPGA: Recv ZSGSRD 29921
17-03-18 01:42:26.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:26.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:26.620 -07 000000461 INF: FPGA: Recv ZSGSRD 29920
17-03-18 01:42:26.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:26.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:26.630 -07 000000461 INF: FPGA: Recv ZSGSRD 29926
17-03-18 01:42:26.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:26.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:26.640 -07 000000461 INF: FPGA: Recv ZSGSRD 29915
17-03-18 01:42:26.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:26.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:26.650 -07 000000512 INF: FPGA: Recv ZSGSRD 29921
17-03-18 01:42:26.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:26.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:26.660 -07 000000512 INF: FPGA: Recv ZSGSRD 29923
17-03-18 01:42:26.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:26.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:26.670 -07 000000461 INF: FPGA: Recv ZSGSRD 29920
17-03-18 01:42:26.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:26.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:26.680 -07 000000461 INF: FPGA: Recv ZSGSRD 29923
17-03-18 01:42:26.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:26.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:26.690 -07 000000437 INF: FPGA: Recv ZSGSRD 29921
17-03-18 01:42:26.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:26.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:26.700 -07 000000437 INF: FPGA: Recv ZSGSRD 29920
17-03-18 01:42:26.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:26.710 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:26.710 -07 000000626 INF: FPGA: Recv ZPIEZORD 25382
17-03-18 01:42:26.720 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:26.720 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.417 V. Piezo Error = -10.0 V.
17-03-18 01:42:26.720 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29921 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29921 (-131.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29915 (-131.7 uncal um), Max = 29926 (-131.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:42:26.720 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29921, posNoise = 5, negNoise = 6
17-03-18 01:42:26.720 -07 000000610 INF: Z Motor: After move to -0.132520, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:26.720 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 01:42:26.720 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:42:26.720 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:42:26.720 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:42:26.720 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:42:26.720 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:42:26.720 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:42:26.720 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:42:26.720 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:42:26.720 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:42:26.720 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:42:26.720 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:42:26.720 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:42:26.730 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:42:26.730 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:42:26.730 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:42:26.730 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:42:26.740 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:42:26.740 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:42:26.740 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:42:26.740 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:42:26.740 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 29126 150\n [Camera]
17-03-18 01:42:27.280 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:42:27.280 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:42:27.280 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:42:27.340 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:42:27.340 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:42:27.340 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:27.340 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:42:27.340 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:42:27.340 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:27.340 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:27.340 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:42:27.340 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:27.340 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:42:27.650 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29126 778
17-03-18 01:42:27.680 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:42:27.730 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 01:42:27.730 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 01:42:27.730 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:27.730 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 01:42:27.730 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 01:42:27.730 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:27.740 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:27.740 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:42:27.740 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:27.740 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 01:42:27.870 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:42:27.870 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:42:27.870 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:27.870 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:42:27.870 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:42:27.870 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:27.870 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:27.870 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:42:27.880 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:27.880 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:42:28.060 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:42:28.060 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:42:28.060 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 29126 150' command took 2 ms to send, 1303 ms to get response, and 1314 ms overall
17-03-18 01:42:28.060 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.133203
17-03-18 01:42:28.060 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13320 mm
17-03-18 01:42:28.060 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:42:28.060 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 01:42:28.060 -07 000000608 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-18 01:42:28.060 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:28.060 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 29098, sync = True, waitForSettling = False)
17-03-18 01:42:28.060 -07 000000467 INF: Z Motor: Moving to -0.133202 mm, started at -0.132542 mm, distance = -0.66 um
17-03-18 01:42:28.070 -07 000000467 INF: FPGA: Xmit ZDACW 29098\n [Z Motor]
17-03-18 01:42:28.070 -07 000000611 INF: FPGA: Recv YRDPOS 124381
17-03-18 01:42:28.070 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:42:28.070 -07 000000608 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:28.070 -07 000000608 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:42:28.070 -07 000000608 INF: Y Motor: Moving 1344 steps-21
17-03-18 01:42:28.070 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:42:28.080 -07 000000467 INF: FPGA: 'ZDACW 29098' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:28.080 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:28.080 -07 000000424 INF: FPGA: Recv ZDACR 29098
17-03-18 01:42:28.090 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:42:28.090 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:28.090 -07 000000467 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 01:42:28.270 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:42:28.270 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:42:28.270 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:28.270 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:42:28.280 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:42:28.280 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:28.280 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:28.280 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:42:28.280 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:28.290 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 01:42:28.460 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 01:42:28.460 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 01:42:28.510 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:28.510 -07 000000626 INF: FPGA: Recv YRDPOS 126081
17-03-18 01:42:28.520 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:28.520 -07 000000608 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:28.520 -07 000000608 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 01:42:28.520 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.840 mm, average velocity = 2.120 mm/sec
17-03-18 01:42:29.470 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:29.470 -07 000000501 INF: FPGA: Recv YRDPOS 126082
17-03-18 01:42:29.480 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:29.480 -07 000000608 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:29.500 -07 000000608 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:42:29.500 -07 000000608 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:42:29.500 -07 000000608 INF: Y Motor: Moved to 61.5635 after 1438 ms (table move)
17-03-18 01:42:29.500 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133202 mm (DAC = 29098)
17-03-18 01:42:29.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:29.510 -07 000000501 INF: FPGA: Recv ZSGSRD 30028
17-03-18 01:42:29.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:29.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:29.520 -07 000000608 INF: FPGA: Recv ZSGSRD 30022
17-03-18 01:42:29.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:29.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:29.530 -07 000000438 INF: FPGA: Recv ZSGSRD 30028
17-03-18 01:42:29.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:29.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:29.540 -07 000000467 INF: FPGA: Recv ZSGSRD 30029
17-03-18 01:42:29.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:29.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:29.550 -07 000000626 INF: FPGA: Recv ZSGSRD 30020
17-03-18 01:42:29.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:29.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:29.560 -07 000000461 INF: FPGA: Recv ZSGSRD 30020
17-03-18 01:42:29.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:29.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:29.570 -07 000000424 INF: FPGA: Recv ZSGSRD 30024
17-03-18 01:42:29.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:29.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:29.590 -07 000000461 INF: FPGA: Recv ZSGSRD 30026
17-03-18 01:42:29.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:42:29.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:29.600 -07 000000501 INF: FPGA: Recv ZSGSRD 30026
17-03-18 01:42:29.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:29.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:29.610 -07 000000501 INF: FPGA: Recv ZSGSRD 30032
17-03-18 01:42:29.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:29.620 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:29.620 -07 000000626 INF: FPGA: Recv ZPIEZORD 25565
17-03-18 01:42:29.630 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:29.630 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.440 V. Piezo Error = -9.8 V.
17-03-18 01:42:29.630 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30026 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30026 (-132.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30020 (-132.4 uncal um), Max = 30032 (-132.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:42:29.630 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30026, posNoise = 6, negNoise = 6
17-03-18 01:42:29.630 -07 000000610 INF: Z Motor: After move to -0.133202, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:29.630 -07 000000610 INF: Z Motor: Settle wait time = 1440 ms, measure time = 120 ms (allowed 150 ms), total time = 1560 ms
17-03-18 01:42:29.630 -07 000000610 INF: Z Motor: Waiting extra 30 ms after reading position to reach expected total of 150 ms
17-03-18 01:42:29.660 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-18 01:42:29.660 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:42:29.660 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.13321674577965. ----------
17-03-18 01:42:29.660 -07 000000610 INF: Cycle	90	Tile	3	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:42:29.660 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28922, sync = True, waitForSettling = True)
17-03-18 01:42:29.660 -07 000000610 INF: Z Motor: Moving to -0.132396 mm, started at -0.133217 mm, distance = 0.82 um
17-03-18 01:42:29.660 -07 000000610 INF: FPGA: Xmit ZDACW 28922\n [Z Motor]
17-03-18 01:42:29.660 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 01:42:29.670 -07 000000610 INF: FPGA: 'ZDACW 28922' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:42:29.670 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:29.670 -07 000000467 INF: FPGA: Recv ZDACR 28922
17-03-18 01:42:29.680 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:29.680 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:42:29.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:29.830 -07 000000608 INF: FPGA: Recv ZSGSRD 29898
17-03-18 01:42:29.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:29.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:29.840 -07 000000438 INF: FPGA: Recv ZSGSRD 29905
17-03-18 01:42:29.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:29.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:29.850 -07 000000608 INF: FPGA: Recv ZSGSRD 29893
17-03-18 01:42:29.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:29.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:29.860 -07 000000501 INF: FPGA: Recv ZSGSRD 29900
17-03-18 01:42:29.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:29.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:29.870 -07 000000437 INF: FPGA: Recv ZSGSRD 29903
17-03-18 01:42:29.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:42:29.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:29.880 -07 000000461 INF: FPGA: Recv ZSGSRD 29894
17-03-18 01:42:29.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:29.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:29.900 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 3.988112,
17-03-18 01:42:29.900 -07 000000512 INF: FPGA: Recv ZSGSRD 29899
17-03-18 01:42:29.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:42:29.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:29.910 -07 000000438 INF: FPGA: Recv ZSGSRD 29906
17-03-18 01:42:29.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:29.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:29.930 -07 000000437 INF: FPGA: Recv ZSGSRD 29898
17-03-18 01:42:29.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:42:29.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:29.940 -07 000000461 INF: FPGA: Recv ZSGSRD 29900
17-03-18 01:42:29.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:29.970 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:29.970 -07 000000461 INF: FPGA: Recv ZPIEZORD 25406
17-03-18 01:42:29.980 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:42:29.980 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.413 V. Piezo Error = -9.9 V.
17-03-18 01:42:29.980 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29900 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29900 (-131.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29893 (-131.6 uncal um), Max = 29906 (-131.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:42:29.980 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29900, posNoise = 6, negNoise = 7
17-03-18 01:42:29.980 -07 000000610 INF: Z Motor: After move to -0.132396, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:29.980 -07 000000610 INF: Z Motor: MoveAbsStepped took 316 ms)
17-03-18 01:42:29.980 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:42:29.980 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:42:29.980 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:42:29.980 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:42:29.980 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:42:29.980 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:42:29.980 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:42:29.980 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:42:29.980 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:42:29.980 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:42:29.980 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:42:29.980 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:42:29.980 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:42:29.980 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:42:29.980 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:42:29.990 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:42:30.000 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:42:30.000 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:42:30.000 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:42:30.000 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:42:30.000 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 29098 150\n [Camera]
17-03-18 01:42:30.200 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:42:30.600 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:42:30.600 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:42:30.600 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:30.600 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:42:30.600 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:42:30.600 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:30.600 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:30.600 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) start.
17-03-18 01:42:30.600 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:30.600 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 01:42:30.790 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29098 776
17-03-18 01:42:30.940 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:42:30.970 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 01:42:30.970 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 01:42:30.970 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:30.980 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 01:42:30.980 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 01:42:30.980 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:30.980 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:42:30.980 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 01:42:30.980 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:30.990 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 01:42:31.130 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:42:31.130 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:42:31.130 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:31.130 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:31.130 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-18 01:42:31.130 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:42:31.130 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:42:31.130 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:31.130 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:31.130 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:42:31.320 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:42:31.320 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:42:31.320 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 29098 150' command took 2 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-18 01:42:31.320 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.132762
17-03-18 01:42:31.320 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13276 mm
17-03-18 01:42:31.320 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:42:31.320 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 01:42:31.320 -07 000000461 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-18 01:42:31.320 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29002, sync = True, waitForSettling = False)
17-03-18 01:42:31.320 -07 000000626 INF: Z Motor: Moving to -0.132763 mm, started at -0.132407 mm, distance = -0.36 um
17-03-18 01:42:31.320 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:31.330 -07 000000626 INF: FPGA: Xmit ZDACW 29002\n [Z Motor]
17-03-18 01:42:31.330 -07 000000512 INF: FPGA: Recv YRDPOS 126082
17-03-18 01:42:31.330 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-18 01:42:31.330 -07 000000461 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:31.330 -07 000000461 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:42:31.330 -07 000000461 INF: Y Motor: Moving 1343 steps-20
17-03-18 01:42:31.330 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:42:31.340 -07 000000626 INF: FPGA: 'ZDACW 29002' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:31.340 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:42:31.350 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:31.350 -07 000000467 INF: FPGA: Recv ZDACR 29002
17-03-18 01:42:31.360 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:42:31.360 -07 000000626 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-18 01:42:31.510 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 01:42:31.510 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 01:42:31.510 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:31.510 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 01:42:31.510 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 01:42:31.510 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:31.510 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:31.510 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 01:42:31.510 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:31.520 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 01:42:31.710 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 01:42:31.710 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-18 01:42:31.760 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:31.760 -07 000000467 INF: FPGA: Recv YRDPOS 127784
17-03-18 01:42:31.770 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:42:31.770 -07 000000461 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:31.770 -07 000000461 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 01:42:31.770 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.839 mm, average velocity = 2.197 mm/sec
17-03-18 01:42:32.280 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:42:32.290 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:42:32.720 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:32.720 -07 000000438 INF: FPGA: Recv YRDPOS 127785
17-03-18 01:42:32.730 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:32.730 -07 000000461 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:32.750 -07 000000461 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:42:32.750 -07 000000461 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:42:32.750 -07 000000461 INF: Y Motor: Moved to 62.3950 after 1427 ms (table move)
17-03-18 01:42:32.750 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132763 mm (DAC = 29002)
17-03-18 01:42:32.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:32.760 -07 000000512 INF: FPGA: Recv ZSGSRD 29964
17-03-18 01:42:32.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:42:32.760 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:32.760 -07 000000626 INF: FPGA: Recv ZSGSRD 29953
17-03-18 01:42:32.770 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:42:32.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:32.770 -07 000000438 INF: FPGA: Recv ZSGSRD 29962
17-03-18 01:42:32.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:32.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:32.780 -07 000000424 INF: FPGA: Recv ZSGSRD 29959
17-03-18 01:42:32.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:32.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:32.790 -07 000000438 INF: FPGA: Recv ZSGSRD 29955
17-03-18 01:42:32.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:32.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:32.800 -07 000000467 INF: FPGA: Recv ZSGSRD 29957
17-03-18 01:42:32.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:32.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:32.810 -07 000000437 INF: FPGA: Recv ZSGSRD 29952
17-03-18 01:42:32.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:32.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:32.820 -07 000000438 INF: FPGA: Recv ZSGSRD 29949
17-03-18 01:42:32.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:32.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:32.830 -07 000000626 INF: FPGA: Recv ZSGSRD 29952
17-03-18 01:42:32.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:32.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:32.840 -07 000000501 INF: FPGA: Recv ZSGSRD 29963
17-03-18 01:42:32.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:32.850 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:32.850 -07 000000626 INF: FPGA: Recv ZPIEZORD 25465
17-03-18 01:42:32.860 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:32.860 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.425 V. Piezo Error = -9.9 V.
17-03-18 01:42:32.860 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29957 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29956 (-132.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29949 (-131.9 uncal um), Max = 29964 (-132.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:42:32.860 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29957, posNoise = 7, negNoise = 8
17-03-18 01:42:32.860 -07 000000610 INF: Z Motor: After move to -0.132763, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:32.860 -07 000000610 INF: Z Motor: Settle wait time = 1429 ms, measure time = 102 ms (allowed 150 ms), total time = 1531 ms
17-03-18 01:42:32.860 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 01:42:32.910 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-18 01:42:32.910 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:42:32.910 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.132773475141868. ----------
17-03-18 01:42:32.910 -07 000000610 INF: Cycle	90	Tile	4	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:42:32.910 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28825, sync = True, waitForSettling = True)
17-03-18 01:42:32.910 -07 000000610 INF: Z Motor: Moving to -0.131952 mm, started at -0.132773 mm, distance = 0.82 um
17-03-18 01:42:32.910 -07 000000610 INF: FPGA: Xmit ZDACW 28825\n [Z Motor]
17-03-18 01:42:32.910 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 01:42:32.920 -07 000000610 INF: FPGA: 'ZDACW 28825' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:42:32.920 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:32.920 -07 000000626 INF: FPGA: Recv ZDACR 28825
17-03-18 01:42:32.930 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:32.930 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:42:33.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:33.080 -07 000000461 INF: FPGA: Recv ZSGSRD 29832
17-03-18 01:42:33.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:33.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:33.090 -07 000000512 INF: FPGA: Recv ZSGSRD 29832
17-03-18 01:42:33.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:33.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:33.100 -07 000000467 INF: FPGA: Recv ZSGSRD 29826
17-03-18 01:42:33.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:33.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:33.110 -07 000000461 INF: FPGA: Recv ZSGSRD 29826
17-03-18 01:42:33.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:33.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:33.120 -07 000000438 INF: FPGA: Recv ZSGSRD 29824
17-03-18 01:42:33.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:33.130 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:33.130 -07 000000501 INF: FPGA: Recv ZSGSRD 29837
17-03-18 01:42:33.140 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:33.140 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:33.140 -07 000000512 INF: FPGA: Recv ZSGSRD 29832
17-03-18 01:42:33.150 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:33.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:33.150 -07 000000438 INF: FPGA: Recv ZSGSRD 29829
17-03-18 01:42:33.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:33.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:33.160 -07 000000437 INF: FPGA: Recv ZSGSRD 29831
17-03-18 01:42:33.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:33.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:33.170 -07 000000461 INF: FPGA: Recv ZSGSRD 29828
17-03-18 01:42:33.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:33.180 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:33.180 -07 000000438 INF: FPGA: Recv ZPIEZORD 25330
17-03-18 01:42:33.190 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:33.190 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.398 V. Piezo Error = -9.9 V.
17-03-18 01:42:33.190 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29830 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29830 (-131.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29824 (-131.1 uncal um), Max = 29837 (-131.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:42:33.190 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29830, posNoise = 7, negNoise = 6
17-03-18 01:42:33.190 -07 000000610 INF: Z Motor: After move to -0.131952, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:33.190 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 01:42:33.190 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:42:33.190 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:42:33.190 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:42:33.190 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:42:33.190 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:42:33.190 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:42:33.190 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:42:33.190 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:42:33.190 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:42:33.190 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:42:33.190 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:42:33.190 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:42:33.200 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:42:33.200 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:42:33.200 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:42:33.200 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:42:33.210 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 01:42:33.210 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 01:42:33.210 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 01:42:33.210 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:42:33.210 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 29002 150\n [Camera]
17-03-18 01:42:33.410 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:42:33.800 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:42:33.800 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:42:33.800 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:33.800 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:33.800 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 01:42:33.810 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:42:33.810 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:42:33.810 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:33.810 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:33.810 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 01:42:34.000 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29002 776
17-03-18 01:42:34.150 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:42:34.180 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 01:42:34.180 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 01:42:34.180 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:34.180 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 01:42:34.180 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 01:42:34.180 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:34.180 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:42:34.180 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 01:42:34.190 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:42:34.200 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 01:42:34.330 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:42:34.330 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:42:34.330 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:34.330 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:34.330 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 01:42:34.340 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:42:34.340 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:42:34.340 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:34.340 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:34.340 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 01:42:34.520 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:42:34.530 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:42:34.530 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 29002 150' command took 2 ms to send, 1310 ms to get response, and 1314 ms overall
17-03-18 01:42:34.530 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:42:34.530 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.131957600199864. ------
17-03-18 01:42:34.530 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:42:34.530 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13865 mm
17-03-18 01:42:34.530 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:42:34.530 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 30289, sync = True, waitForSettling = False)
17-03-18 01:42:34.530 -07 000000437 INF: Z Motor: Moving to -0.138654 mm, started at -0.131958 mm, distance = -6.70 um
17-03-18 01:42:34.530 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 01:42:34.530 -07 000000438 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 01:42:34.540 -07 000000437 INF: FPGA: Xmit ZDACW 30289\n [Z Motor]
17-03-18 01:42:34.550 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:34.730 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:42:34.730 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:42:34.730 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:34.730 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 01:42:34.730 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:42:34.730 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:34.740 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:42:34.740 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:42:34.740 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:34.750 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 01:42:34.750 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:42:34.750 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:42:34.750 -07 000000461 INF: FPGA: Recv YRDPOS 127785
17-03-18 01:42:34.750 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 199 ms to get response, and 221 ms overall
17-03-18 01:42:34.760 -07 000000438 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:34.760 -07 000000438 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:42:34.760 -07 000000438 INF: Y Motor: Moving 1340 steps-17
17-03-18 01:42:34.760 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 219 ms to get response, and 224 ms overall
17-03-18 01:42:34.760 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:42:34.760 -07 000000437 INF: FPGA: 'ZDACW 30289' command took 0 ms to send, 209 ms to get response, and 221 ms overall
17-03-18 01:42:34.770 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:42:34.780 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:34.780 -07 000000467 INF: FPGA: Recv ZDACR 30289
17-03-18 01:42:34.790 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 01:42:34.790 -07 000000437 INF: Z Motor: MoveAbsStepped took 252 ms (did NOT wait for settling yet))
17-03-18 01:42:34.970 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:42:34.970 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 01:42:35.130 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 01:42:35.130 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 01:42:35.180 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:35.180 -07 000000467 INF: FPGA: Recv YRDPOS 129481
17-03-18 01:42:35.190 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:42:35.190 -07 000000438 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:35.190 -07 000000438 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 01:42:35.190 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.838 mm, average velocity = 2.216 mm/sec
17-03-18 01:42:35.310 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 3.997626,
17-03-18 01:42:36.140 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:36.140 -07 000000437 INF: FPGA: Recv YRDPOS 129481
17-03-18 01:42:36.150 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:36.150 -07 000000438 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:36.170 -07 000000438 INF: Y Motor: After move to 63.232609, error = -0.009464, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:42:36.170 -07 000000438 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:42:36.170 -07 000000438 INF: Y Motor: Moved to 63.2231 after 1639 ms (table move)
17-03-18 01:42:36.180 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138654 mm (DAC = 30289)
17-03-18 01:42:36.180 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:36.180 -07 000000461 INF: FPGA: Recv ZSGSRD 30868
17-03-18 01:42:36.190 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:42:36.190 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:36.190 -07 000000437 INF: FPGA: Recv ZSGSRD 30870
17-03-18 01:42:36.200 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:36.200 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:36.200 -07 000000590 INF: FPGA: Recv ZSGSRD 30880
17-03-18 01:42:36.210 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:36.210 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:36.210 -07 000000438 INF: FPGA: Recv ZSGSRD 30876
17-03-18 01:42:36.220 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:36.220 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:36.220 -07 000000467 INF: FPGA: Recv ZSGSRD 30869
17-03-18 01:42:36.230 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:36.230 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:36.230 -07 000000590 INF: FPGA: Recv ZSGSRD 30873
17-03-18 01:42:36.240 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:36.240 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:36.240 -07 000000438 INF: FPGA: Recv ZSGSRD 30869
17-03-18 01:42:36.250 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:36.250 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:36.250 -07 000000461 INF: FPGA: Recv ZSGSRD 30876
17-03-18 01:42:36.260 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:36.260 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:36.260 -07 000000438 INF: FPGA: Recv ZSGSRD 30874
17-03-18 01:42:36.270 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:36.270 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:36.270 -07 000000591 INF: FPGA: Recv ZSGSRD 30872
17-03-18 01:42:36.280 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:36.280 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:36.280 -07 000000438 INF: FPGA: Recv ZPIEZORD 26695
17-03-18 01:42:36.290 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:36.290 -07 000000512 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.622 V. Piezo Error = -9.2 V.
17-03-18 01:42:36.290 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30873 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30872 (-137.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30868 (-137.8 uncal um), Max = 30880 (-137.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:42:36.290 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30873, posNoise = 7, negNoise = 5
17-03-18 01:42:36.290 -07 000000512 INF: Z Motor: After move to -0.138654, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:36.290 -07 000000512 INF: Z Motor: Settle wait time = 1643 ms, measure time = 109 ms (allowed 150 ms), total time = 1752 ms
17-03-18 01:42:36.290 -07 000000512 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:42:36.340 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1804 ms
17-03-18 01:42:36.340 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:42:36.340 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:42:36.340 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:42:36.340 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:42:36.340 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:42:36.340 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:42:36.340 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:42:36.340 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:42:36.340 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:42:36.350 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:42:36.350 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:42:36.360 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 01:42:36.360 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 01:42:36.360 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:42:36.400 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:42:36.700 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:42:36.700 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:42:36.710 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:42:36.710 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-18 01:42:36.740 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:42:36.740 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 01:42:36.740 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 01:42:36.820 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 01:42:36.820 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:36.820 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:42:36.820 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 01:42:36.840 -07 000000512 INF: Autofocus start
17-03-18 01:42:36.840 -07 000000512 INF: MeasureProfile start
17-03-18 01:42:36.840 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:42:36.840 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:42:36.850 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:42:36.850 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:42:36.850 -07 000000512 INF: MeasureProfile done
17-03-18 01:42:36.850 -07 000000512 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:42:36.850 -07 000000512 INF: Autofocus finished
17-03-18 01:42:37.050 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:42:37.050 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:42:37.050 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22314453125, Z-position -0.138658053463721. ----------
17-03-18 01:42:37.050 -07 000000610 INF: Cycle	90	Tile	5	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:42:37.060 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28796, sync = True, waitForSettling = True)
17-03-18 01:42:37.060 -07 000000610 INF: Z Motor: Moving to -0.131820 mm, started at -0.138658 mm, distance = 6.84 um
17-03-18 01:42:37.060 -07 000000610 INF: FPGA: Xmit ZDACW 28796\n [Z Motor]
17-03-18 01:42:37.060 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 01:42:37.070 -07 000000610 INF: FPGA: 'ZDACW 28796' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:37.070 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:37.070 -07 000000608 INF: FPGA: Recv ZDACR 28796
17-03-18 01:42:37.080 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:37.080 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:42:37.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:37.230 -07 000000461 INF: FPGA: Recv ZSGSRD 29811
17-03-18 01:42:37.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:37.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:37.240 -07 000000608 INF: FPGA: Recv ZSGSRD 29807
17-03-18 01:42:37.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:37.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:37.250 -07 000000437 INF: FPGA: Recv ZSGSRD 29812
17-03-18 01:42:37.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:37.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:37.260 -07 000000467 INF: FPGA: Recv ZSGSRD 29802
17-03-18 01:42:37.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:37.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:37.270 -07 000000437 INF: FPGA: Recv ZSGSRD 29808
17-03-18 01:42:37.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:37.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:37.280 -07 000000438 INF: FPGA: Recv ZSGSRD 29812
17-03-18 01:42:37.280 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:42:37.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:42:37.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:37.290 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:42:37.290 -07 000000590 INF: FPGA: Recv ZSGSRD 29813
17-03-18 01:42:37.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:42:37.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:37.300 -07 000000467 INF: FPGA: Recv ZSGSRD 29815
17-03-18 01:42:37.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:37.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:37.310 -07 000000591 INF: FPGA: Recv ZSGSRD 29807
17-03-18 01:42:37.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:37.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:37.320 -07 000000438 INF: FPGA: Recv ZSGSRD 29807
17-03-18 01:42:37.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:37.330 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:37.330 -07 000000591 INF: FPGA: Recv ZPIEZORD 25325
17-03-18 01:42:37.340 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:37.340 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.394 V. Piezo Error = -9.8 V.
17-03-18 01:42:37.340 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29809 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29810 (-131.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29802 (-131.0 uncal um), Max = 29815 (-131.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:42:37.340 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29809, posNoise = 6, negNoise = 7
17-03-18 01:42:37.340 -07 000000610 INF: Z Motor: After move to -0.131820, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:37.340 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:42:37.340 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:42:37.340 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:42:37.340 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:42:37.340 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:42:37.340 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:42:37.340 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:42:37.340 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:42:37.340 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:42:37.340 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:42:37.340 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:42:37.340 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:42:37.340 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:42:37.340 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:42:37.340 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:42:37.340 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:42:37.340 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:42:37.350 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:42:37.350 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 01:42:37.350 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:42:37.350 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:42:37.360 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28973 150\n [Camera]
17-03-18 01:42:37.560 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:42:37.950 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:42:37.950 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:42:37.950 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:37.950 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:37.950 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 01:42:37.960 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:42:37.960 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:42:37.960 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:37.960 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:37.960 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 01:42:38.140 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28973 776
17-03-18 01:42:38.290 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:42:38.350 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:42:38.350 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:42:38.350 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:38.350 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:42:38.350 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:42:38.350 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:38.360 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:38.360 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:42:38.360 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:38.360 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 01:42:38.480 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:42:38.480 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:42:38.480 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:38.600 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:42:38.600 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:42:38.600 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:38.600 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 01:42:38.610 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:38.610 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:38.610 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:42:38.670 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:42:38.670 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:42:38.670 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28973 150' command took 2 ms to send, 1308 ms to get response, and 1314 ms overall
17-03-18 01:42:38.670 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.132300
17-03-18 01:42:38.680 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13230 mm
17-03-18 01:42:38.680 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:42:38.680 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 01:42:38.680 -07 000000590 INF: Y Motor: Moving to 64.0626 mm, started at 63.2231 mm, delta = 0.8395 mm
17-03-18 01:42:38.680 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:38.680 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 28901, sync = True, waitForSettling = False)
17-03-18 01:42:38.680 -07 000000591 INF: Z Motor: Moving to -0.132300 mm, started at -0.131823 mm, distance = -0.48 um
17-03-18 01:42:38.690 -07 000000591 INF: FPGA: Xmit ZDACW 28901\n [Z Motor]
17-03-18 01:42:39.000 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 01:42:39.000 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 01:42:39.000 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:39.000 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:39.010 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 01:42:39.010 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:42:39.010 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:39.010 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 01:42:39.010 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:39.010 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 529 ms.
17-03-18 01:42:39.020 -07 000000461 INF: FPGA: Recv YRDPOS 129482
17-03-18 01:42:39.020 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:42:39.020 -07 000000591 INF: FPGA: 'ZDACW 28901' command took 2 ms to send, 326 ms to get response, and 342 ms overall
17-03-18 01:42:39.020 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:39.020 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 336 ms to get response, and 342 ms overall
17-03-18 01:42:39.020 -07 000000590 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:39.020 -07 000000438 INF: FPGA: Recv ZDACR 28901
17-03-18 01:42:39.030 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:42:39.030 -07 000000591 INF: Z Motor: MoveAbsStepped took 346 ms (did NOT wait for settling yet))
17-03-18 01:42:39.030 -07 000000590 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:42:39.030 -07 000000590 INF: Y Motor: Moving 1342 steps-19
17-03-18 01:42:39.030 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:42:39.410 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-18 01:42:39.410 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 379 ms overall
17-03-18 01:42:39.450 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:39.450 -07 000000591 INF: FPGA: Recv YRDPOS 131187
17-03-18 01:42:39.460 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:42:39.460 -07 000000590 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:39.460 -07 000000590 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 01:42:39.460 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.839 mm, average velocity = 2.215 mm/sec
17-03-18 01:42:40.410 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:40.410 -07 000000461 INF: FPGA: Recv YRDPOS 131188
17-03-18 01:42:40.420 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:40.420 -07 000000590 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:40.440 -07 000000590 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:42:40.440 -07 000000590 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:42:40.440 -07 000000590 INF: Y Motor: Moved to 64.0566 after 1762 ms (table move)
17-03-18 01:42:40.440 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132300 mm (DAC = 28901)
17-03-18 01:42:40.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:40.450 -07 000000461 INF: FPGA: Recv ZSGSRD 29883
17-03-18 01:42:40.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:42:40.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:40.450 -07 000000461 INF: FPGA: Recv ZSGSRD 29888
17-03-18 01:42:40.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:42:40.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:40.460 -07 000000590 INF: FPGA: Recv ZSGSRD 29882
17-03-18 01:42:40.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:40.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:40.470 -07 000000502 INF: FPGA: Recv ZSGSRD 29884
17-03-18 01:42:40.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:40.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:40.480 -07 000000502 INF: FPGA: Recv ZSGSRD 29895
17-03-18 01:42:40.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:40.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:40.490 -07 000000591 INF: FPGA: Recv ZSGSRD 29893
17-03-18 01:42:40.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:40.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:40.500 -07 000000461 INF: FPGA: Recv ZSGSRD 29880
17-03-18 01:42:40.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:40.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:40.510 -07 000000461 INF: FPGA: Recv ZSGSRD 29886
17-03-18 01:42:40.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:40.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:40.520 -07 000000590 INF: FPGA: Recv ZSGSRD 29879
17-03-18 01:42:40.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:40.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:40.530 -07 000000591 INF: FPGA: Recv ZSGSRD 29882
17-03-18 01:42:40.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:40.540 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:40.540 -07 000000590 INF: FPGA: Recv ZPIEZORD 25445
17-03-18 01:42:40.550 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:40.550 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.410 V. Piezo Error = -9.7 V.
17-03-18 01:42:40.550 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29885 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29884 (-131.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29879 (-131.5 uncal um), Max = 29895 (-131.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:42:40.550 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29885, posNoise = 10, negNoise = 6
17-03-18 01:42:40.550 -07 000000610 INF: Z Motor: After move to -0.132300, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:40.550 -07 000000610 INF: Z Motor: Settle wait time = 1764 ms, measure time = 102 ms (allowed 150 ms), total time = 1866 ms
17-03-18 01:42:40.550 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 01:42:40.600 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1919 ms
17-03-18 01:42:40.600 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:42:40.600 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.132310931867661. ----------
17-03-18 01:42:40.600 -07 000000610 INF: Cycle	90	Tile	6	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:42:40.600 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28724, sync = True, waitForSettling = True)
17-03-18 01:42:40.600 -07 000000610 INF: Z Motor: Moving to -0.131490 mm, started at -0.132311 mm, distance = 0.82 um
17-03-18 01:42:40.600 -07 000000610 INF: FPGA: Xmit ZDACW 28724\n [Z Motor]
17-03-18 01:42:40.600 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 01:42:40.610 -07 000000610 INF: FPGA: 'ZDACW 28724' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:42:40.610 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:40.610 -07 000000591 INF: FPGA: Recv ZDACR 28724
17-03-18 01:42:40.620 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:40.620 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:42:40.670 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 3.996267,
17-03-18 01:42:40.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:40.770 -07 000000487 INF: FPGA: Recv ZSGSRD 29759
17-03-18 01:42:40.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:40.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:40.780 -07 000000461 INF: FPGA: Recv ZSGSRD 29758
17-03-18 01:42:40.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:40.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:40.790 -07 000000590 INF: FPGA: Recv ZSGSRD 29755
17-03-18 01:42:40.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:40.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:40.800 -07 000000502 INF: FPGA: Recv ZSGSRD 29759
17-03-18 01:42:40.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:40.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:40.810 -07 000000487 INF: FPGA: Recv ZSGSRD 29759
17-03-18 01:42:40.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:40.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:40.820 -07 000000502 INF: FPGA: Recv ZSGSRD 29760
17-03-18 01:42:40.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:40.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:40.830 -07 000000590 INF: FPGA: Recv ZSGSRD 29753
17-03-18 01:42:40.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:40.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:40.840 -07 000000590 INF: FPGA: Recv ZSGSRD 29757
17-03-18 01:42:40.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:40.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:40.850 -07 000000461 INF: FPGA: Recv ZSGSRD 29760
17-03-18 01:42:40.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:40.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:40.860 -07 000000590 INF: FPGA: Recv ZSGSRD 29757
17-03-18 01:42:40.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:40.870 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:40.870 -07 000000502 INF: FPGA: Recv ZPIEZORD 25283
17-03-18 01:42:40.880 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:40.880 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.383 V. Piezo Error = -9.8 V.
17-03-18 01:42:40.880 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29758 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29758 (-130.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29753 (-130.7 uncal um), Max = 29760 (-130.7 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:42:40.880 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29758, posNoise = 2, negNoise = 5
17-03-18 01:42:40.880 -07 000000610 INF: Z Motor: After move to -0.131490, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:40.880 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 01:42:40.880 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:42:40.880 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:42:40.880 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:42:40.880 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:42:40.880 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:42:40.880 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:42:40.880 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:42:40.880 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:42:40.880 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:42:40.880 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:42:40.880 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:42:40.880 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:42:40.890 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:42:40.890 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:42:40.890 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:42:40.890 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:42:40.900 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:42:40.900 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:42:40.900 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:42:40.900 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:42:40.900 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28901 150\n [Camera]
17-03-18 01:42:41.100 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:42:41.490 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:42:41.490 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:42:41.490 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:41.490 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:42:41.490 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:42:41.500 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:41.500 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:42:41.500 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:41.500 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:41.500 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:42:41.680 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28901 776
17-03-18 01:42:41.830 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 01:42:41.890 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 01:42:41.890 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:42:41.890 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:41.890 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 01:42:41.890 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 01:42:41.890 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:41.890 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:41.890 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:42:41.900 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:41.900 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 01:42:42.020 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:42:42.020 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:42:42.020 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:42.020 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:42:42.020 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:42:42.020 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:42.130 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:42.130 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 01:42:42.140 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:42.140 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 01:42:42.210 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:42:42.210 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:42:42.210 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28901 150' command took 2 ms to send, 1306 ms to get response, and 1314 ms overall
17-03-18 01:42:42.210 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.132116
17-03-18 01:42:42.210 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13212 mm
17-03-18 01:42:42.210 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:42:42.220 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 28861, sync = True, waitForSettling = False)
17-03-18 01:42:42.220 -07 000000501 INF: Z Motor: Moving to -0.132117 mm, started at -0.131495 mm, distance = -0.62 um
17-03-18 01:42:42.220 -07 000000501 INF: FPGA: Xmit ZDACW 28861\n [Z Motor]
17-03-18 01:42:42.220 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 01:42:42.220 -07 000000461 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-18 01:42:42.220 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:42:42.230 -07 000000501 INF: FPGA: 'ZDACW 28861' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:42:42.230 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:42.230 -07 000000424 INF: FPGA: Recv YRDPOS 131188
17-03-18 01:42:42.240 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:42:42.240 -07 000000461 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:42.240 -07 000000461 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:42:42.240 -07 000000461 INF: Y Motor: Moving 1338 steps-13
17-03-18 01:42:42.240 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:42.240 -07 000000591 INF: FPGA: Recv ZDACR 28861
17-03-18 01:42:42.250 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:42:42.250 -07 000000501 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-18 01:42:42.250 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:42:42.280 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:42:42.290 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:42:42.520 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 01:42:42.520 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 01:42:42.520 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:42.520 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 01:42:42.520 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 01:42:42.520 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:42.530 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:42:42.530 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:42:42.530 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 506 ms.
17-03-18 01:42:42.530 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-18 01:42:42.620 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 01:42:42.620 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 01:42:42.670 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:42.670 -07 000000502 INF: FPGA: Recv YRDPOS 132871
17-03-18 01:42:42.680 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:42:42.680 -07 000000461 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:42.680 -07 000000461 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 01:42:42.680 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.836 mm, average velocity = 2.155 mm/sec
17-03-18 01:42:43.630 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:43.630 -07 000000502 INF: FPGA: Recv YRDPOS 132871
17-03-18 01:42:43.640 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:43.640 -07 000000461 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:43.660 -07 000000461 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:42:43.660 -07 000000461 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:42:43.660 -07 000000461 INF: Y Motor: Moved to 64.8784 after 1443 ms (table move)
17-03-18 01:42:43.660 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132117 mm (DAC = 28861)
17-03-18 01:42:43.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:43.670 -07 000000461 INF: FPGA: Recv ZSGSRD 29856
17-03-18 01:42:43.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 01:42:43.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:43.670 -07 000000461 INF: FPGA: Recv ZSGSRD 29861
17-03-18 01:42:43.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:42:43.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:43.680 -07 000000502 INF: FPGA: Recv ZSGSRD 29859
17-03-18 01:42:43.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:43.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:43.690 -07 000000487 INF: FPGA: Recv ZSGSRD 29862
17-03-18 01:42:43.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:43.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:43.700 -07 000000487 INF: FPGA: Recv ZSGSRD 29854
17-03-18 01:42:43.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:43.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:43.710 -07 000000502 INF: FPGA: Recv ZSGSRD 29863
17-03-18 01:42:43.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:43.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:43.720 -07 000000502 INF: FPGA: Recv ZSGSRD 29851
17-03-18 01:42:43.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:43.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:43.730 -07 000000502 INF: FPGA: Recv ZSGSRD 29853
17-03-18 01:42:43.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:43.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:43.740 -07 000000502 INF: FPGA: Recv ZSGSRD 29849
17-03-18 01:42:43.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:43.750 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:43.750 -07 000000487 INF: FPGA: Recv ZSGSRD 29851
17-03-18 01:42:43.760 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:43.760 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:43.760 -07 000000487 INF: FPGA: Recv ZPIEZORD 25434
17-03-18 01:42:43.770 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:43.770 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.404 V. Piezo Error = -9.7 V.
17-03-18 01:42:43.770 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29856 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29855 (-131.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29849 (-131.3 uncal um), Max = 29863 (-131.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:42:43.770 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29856, posNoise = 7, negNoise = 7
17-03-18 01:42:43.770 -07 000000610 INF: Z Motor: After move to -0.132117, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:43.770 -07 000000610 INF: Z Motor: Settle wait time = 1447 ms, measure time = 101 ms (allowed 150 ms), total time = 1548 ms
17-03-18 01:42:43.770 -07 000000610 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 01:42:43.820 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-18 01:42:43.820 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:42:43.820 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.13212462971555. ----------
17-03-18 01:42:43.820 -07 000000610 INF: Cycle	90	Tile	7	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:42:43.820 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28684, sync = True, waitForSettling = True)
17-03-18 01:42:43.820 -07 000000610 INF: Z Motor: Moving to -0.131307 mm, started at -0.132125 mm, distance = 0.82 um
17-03-18 01:42:43.820 -07 000000610 INF: FPGA: Xmit ZDACW 28684\n [Z Motor]
17-03-18 01:42:43.820 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:42:43.830 -07 000000610 INF: FPGA: 'ZDACW 28684' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:42:43.830 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:43.830 -07 000000502 INF: FPGA: Recv ZDACR 28684
17-03-18 01:42:43.840 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:43.840 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:42:43.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:43.990 -07 000000487 INF: FPGA: Recv ZSGSRD 29735
17-03-18 01:42:44.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:44.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:44.000 -07 000000487 INF: FPGA: Recv ZSGSRD 29731
17-03-18 01:42:44.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:44.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:44.010 -07 000000461 INF: FPGA: Recv ZSGSRD 29734
17-03-18 01:42:44.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:44.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:44.020 -07 000000502 INF: FPGA: Recv ZSGSRD 29732
17-03-18 01:42:44.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:44.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:44.030 -07 000000487 INF: FPGA: Recv ZSGSRD 29733
17-03-18 01:42:44.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:44.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:44.040 -07 000000502 INF: FPGA: Recv ZSGSRD 29732
17-03-18 01:42:44.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:44.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:44.050 -07 000000502 INF: FPGA: Recv ZSGSRD 29723
17-03-18 01:42:44.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:44.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:44.060 -07 000000461 INF: FPGA: Recv ZSGSRD 29728
17-03-18 01:42:44.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:44.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:44.070 -07 000000437 INF: FPGA: Recv ZSGSRD 29725
17-03-18 01:42:44.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:44.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:44.080 -07 000000502 INF: FPGA: Recv ZSGSRD 29731
17-03-18 01:42:44.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:44.090 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:44.090 -07 000000461 INF: FPGA: Recv ZPIEZORD 25228
17-03-18 01:42:44.100 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:44.100 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.377 V. Piezo Error = -9.9 V.
17-03-18 01:42:44.100 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29730 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29732 (-130.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29723 (-130.5 uncal um), Max = 29735 (-130.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:42:44.100 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29730, posNoise = 5, negNoise = 7
17-03-18 01:42:44.100 -07 000000610 INF: Z Motor: After move to -0.131307, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:44.100 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 01:42:44.100 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:42:44.100 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:42:44.100 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:42:44.100 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:42:44.100 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:42:44.100 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:42:44.100 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:42:44.100 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:42:44.100 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:42:44.100 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:42:44.100 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:42:44.100 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:42:44.110 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:42:44.110 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:42:44.110 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:42:44.110 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:42:44.120 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:42:44.120 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:42:44.120 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:42:44.120 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:42:44.130 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28861 150\n [Camera]
17-03-18 01:42:44.330 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:42:44.720 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:42:44.720 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:42:44.720 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:44.720 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:42:44.720 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:42:44.720 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:44.720 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:44.720 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:42:44.730 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:44.730 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:42:44.910 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28861 776
17-03-18 01:42:45.060 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:42:45.100 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 01:42:45.100 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 01:42:45.100 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:45.110 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 01:42:45.110 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 01:42:45.110 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:45.110 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:45.110 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 01:42:45.110 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:45.120 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:42:45.250 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:42:45.250 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:42:45.250 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:45.260 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:45.260 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 01:42:45.260 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:42:45.260 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:42:45.260 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:45.260 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:45.260 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-18 01:42:45.440 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:42:45.440 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:42:45.440 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28861 150' command took 2 ms to send, 1307 ms to get response, and 1317 ms overall
17-03-18 01:42:45.440 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.131909
17-03-18 01:42:45.440 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13191 mm
17-03-18 01:42:45.440 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:42:45.450 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 01:42:45.450 -07 000000502 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 01:42:45.450 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:45.450 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 28815, sync = True, waitForSettling = False)
17-03-18 01:42:45.450 -07 000000512 INF: Z Motor: Moving to -0.131907 mm, started at -0.131315 mm, distance = -0.59 um
17-03-18 01:42:45.450 -07 000000487 INF: FPGA: Recv YRDPOS 132871
17-03-18 01:42:45.460 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:42:45.460 -07 000000502 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:45.460 -07 000000502 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:42:45.460 -07 000000502 INF: Y Motor: Moving 1351 steps-29
17-03-18 01:42:45.460 -07 000000512 INF: FPGA: Xmit ZDACW 28815\n [Z Motor]
17-03-18 01:42:45.460 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:42:45.470 -07 000000512 INF: FPGA: 'ZDACW 28815' command took 1 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 01:42:45.470 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:45.470 -07 000000437 INF: FPGA: Recv ZDACR 28815
17-03-18 01:42:45.480 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:42:45.480 -07 000000512 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:45.480 -07 000000512 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-18 01:42:45.630 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 01:42:45.630 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 01:42:45.630 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:45.640 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:45.640 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 01:42:45.640 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 01:42:45.640 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 01:42:45.640 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:45.640 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:42:45.650 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 01:42:45.860 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 01:42:45.860 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-18 01:42:45.910 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:45.910 -07 000000437 INF: FPGA: Recv YRDPOS 134581
17-03-18 01:42:45.920 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:42:45.920 -07 000000502 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:45.920 -07 000000502 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 01:42:45.920 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.844 mm, average velocity = 2.110 mm/sec
17-03-18 01:42:46.030 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 3.969015,
17-03-18 01:42:46.870 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:46.870 -07 000000591 INF: FPGA: Recv YRDPOS 134581
17-03-18 01:42:46.880 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:46.880 -07 000000502 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:46.910 -07 000000502 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:42:46.910 -07 000000502 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:42:46.910 -07 000000502 INF: Y Motor: Moved to 65.7134 after 1462 ms (table move)
17-03-18 01:42:46.910 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131907 mm (DAC = 28815)
17-03-18 01:42:46.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:46.910 -07 000000502 INF: FPGA: Recv ZSGSRD 29823
17-03-18 01:42:46.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:42:46.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:46.920 -07 000000591 INF: FPGA: Recv ZSGSRD 29827
17-03-18 01:42:46.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:46.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:46.930 -07 000000502 INF: FPGA: Recv ZSGSRD 29824
17-03-18 01:42:46.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:46.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:46.940 -07 000000591 INF: FPGA: Recv ZSGSRD 29824
17-03-18 01:42:46.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:46.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:46.950 -07 000000487 INF: FPGA: Recv ZSGSRD 29820
17-03-18 01:42:46.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:46.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:46.960 -07 000000487 INF: FPGA: Recv ZSGSRD 29824
17-03-18 01:42:46.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:46.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:46.970 -07 000000467 INF: FPGA: Recv ZSGSRD 29822
17-03-18 01:42:46.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:46.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:46.980 -07 000000467 INF: FPGA: Recv ZSGSRD 29826
17-03-18 01:42:46.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:46.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:46.990 -07 000000487 INF: FPGA: Recv ZSGSRD 29827
17-03-18 01:42:47.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:47.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:47.000 -07 000000487 INF: FPGA: Recv ZSGSRD 29822
17-03-18 01:42:47.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:47.010 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:47.010 -07 000000467 INF: FPGA: Recv ZPIEZORD 25410
17-03-18 01:42:47.020 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:47.020 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.397 V. Piezo Error = -9.7 V.
17-03-18 01:42:47.020 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29824 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29824 (-131.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29820 (-131.1 uncal um), Max = 29827 (-131.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:42:47.020 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29824, posNoise = 3, negNoise = 4
17-03-18 01:42:47.020 -07 000000610 INF: Z Motor: After move to -0.131907, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:47.020 -07 000000610 INF: Z Motor: Settle wait time = 1462 ms, measure time = 105 ms (allowed 150 ms), total time = 1567 ms
17-03-18 01:42:47.020 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 01:42:47.070 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 01:42:47.070 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:42:47.070 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.131919054927014. ----------
17-03-18 01:42:47.070 -07 000000610 INF: Cycle	90	Tile	8	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:42:47.070 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28639, sync = True, waitForSettling = True)
17-03-18 01:42:47.070 -07 000000610 INF: Z Motor: Moving to -0.131101 mm, started at -0.131919 mm, distance = 0.82 um
17-03-18 01:42:47.070 -07 000000610 INF: FPGA: Xmit ZDACW 28639\n [Z Motor]
17-03-18 01:42:47.070 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:42:47.080 -07 000000610 INF: FPGA: 'ZDACW 28639' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:42:47.080 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:47.080 -07 000000487 INF: FPGA: Recv ZDACR 28639
17-03-18 01:42:47.090 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:47.090 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:42:47.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:47.240 -07 000000467 INF: FPGA: Recv ZSGSRD 29705
17-03-18 01:42:47.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:47.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:47.250 -07 000000487 INF: FPGA: Recv ZSGSRD 29695
17-03-18 01:42:47.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:47.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:47.260 -07 000000467 INF: FPGA: Recv ZSGSRD 29700
17-03-18 01:42:47.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:47.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:47.270 -07 000000487 INF: FPGA: Recv ZSGSRD 29702
17-03-18 01:42:47.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:47.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:47.280 -07 000000487 INF: FPGA: Recv ZSGSRD 29699
17-03-18 01:42:47.280 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:42:47.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:47.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:47.290 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:42:47.290 -07 000000467 INF: FPGA: Recv ZSGSRD 29700
17-03-18 01:42:47.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:47.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:47.300 -07 000000487 INF: FPGA: Recv ZSGSRD 29695
17-03-18 01:42:47.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:47.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:47.310 -07 000000487 INF: FPGA: Recv ZSGSRD 29707
17-03-18 01:42:47.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:47.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:47.320 -07 000000487 INF: FPGA: Recv ZSGSRD 29703
17-03-18 01:42:47.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:47.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:47.330 -07 000000467 INF: FPGA: Recv ZSGSRD 29693
17-03-18 01:42:47.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:47.340 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:47.340 -07 000000590 INF: FPGA: Recv ZPIEZORD 25216
17-03-18 01:42:47.350 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:47.350 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.370 V. Piezo Error = -9.8 V.
17-03-18 01:42:47.350 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29700 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29700 (-130.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29693 (-130.3 uncal um), Max = 29707 (-130.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:42:47.350 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29700, posNoise = 7, negNoise = 7
17-03-18 01:42:47.350 -07 000000610 INF: Z Motor: After move to -0.131101, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:47.350 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 01:42:47.350 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:42:47.350 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:42:47.350 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:42:47.350 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:42:47.350 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:42:47.350 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:42:47.350 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:42:47.350 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:42:47.350 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:42:47.350 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:42:47.350 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:42:47.350 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:42:47.360 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:42:47.360 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:42:47.360 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:42:47.360 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:42:47.370 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 01:42:47.370 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 01:42:47.370 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 01:42:47.370 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 01:42:47.370 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28815 150\n [Camera]
17-03-18 01:42:47.570 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:42:47.970 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:42:47.970 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:42:47.970 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:47.970 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:47.970 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-18 01:42:47.970 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:42:47.970 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:42:47.970 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:47.970 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:47.970 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 01:42:48.160 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28815 777
17-03-18 01:42:48.310 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:42:48.370 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:42:48.370 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:42:48.370 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:48.370 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:42:48.370 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:42:48.370 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:48.370 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:42:48.370 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:42:48.370 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:42:48.380 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:42:48.500 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:42:48.500 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:42:48.500 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:48.500 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:48.500 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 01:42:48.500 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:42:48.500 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:42:48.500 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:48.500 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:48.500 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 01:42:48.690 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:42:48.690 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:42:48.690 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28815 150' command took 2 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-18 01:42:48.690 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:42:48.690 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.131122452621435. ------
17-03-18 01:42:48.690 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:42:48.690 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13748 mm
17-03-18 01:42:48.690 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:42:48.700 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 01:42:48.700 -07 000000626 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 01:42:48.700 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 30033, sync = True, waitForSettling = False)
17-03-18 01:42:48.700 -07 000000512 INF: Z Motor: Moving to -0.137482 mm, started at -0.131122 mm, distance = -6.36 um
17-03-18 01:42:48.700 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:42:48.700 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:42:48.700 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:48.700 -07 000000462 INF: FPGA: Recv YRDPOS 134582
17-03-18 01:42:48.710 -07 000000626 INF: FPGA: 'YRDPOS' command took 3 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:48.710 -07 000000626 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:48.710 -07 000000512 INF: FPGA: Xmit ZDACW 30033\n [Z Motor]
17-03-18 01:42:48.710 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 01:42:48.710 -07 000000626 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:42:48.710 -07 000000626 INF: Y Motor: Moving 1342 steps-19
17-03-18 01:42:48.720 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:42:48.720 -07 000000512 INF: FPGA: 'ZDACW 30033' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:42:48.730 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:42:48.740 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:48.740 -07 000000424 INF: FPGA: Recv ZDACR 30033
17-03-18 01:42:48.750 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:42:48.750 -07 000000512 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 01:42:48.880 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 01:42:48.880 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 01:42:48.880 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:48.890 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 01:42:48.890 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 01:42:48.890 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:48.890 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:42:48.890 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:42:48.890 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:42:48.900 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:42:48.920 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:42:48.920 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-18 01:42:49.100 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 01:42:49.100 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 389 ms overall
17-03-18 01:42:49.150 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:49.150 -07 000000608 INF: FPGA: Recv YRDPOS 136270
17-03-18 01:42:49.160 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:42:49.160 -07 000000626 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:49.160 -07 000000626 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 01:42:49.160 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.839 mm, average velocity = 2.152 mm/sec
17-03-18 01:42:50.110 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:50.110 -07 000000438 INF: FPGA: Recv YRDPOS 136271
17-03-18 01:42:50.120 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:50.120 -07 000000626 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:50.140 -07 000000626 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:42:50.140 -07 000000626 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:42:50.140 -07 000000626 INF: Y Motor: Moved to 66.5386 after 1448 ms (table move)
17-03-18 01:42:50.150 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137482 mm (DAC = 30033)
17-03-18 01:42:50.150 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:50.150 -07 000000467 INF: FPGA: Recv ZSGSRD 30683
17-03-18 01:42:50.160 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:42:50.160 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:50.160 -07 000000467 INF: FPGA: Recv ZSGSRD 30698
17-03-18 01:42:50.170 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:50.170 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:50.170 -07 000000467 INF: FPGA: Recv ZSGSRD 30692
17-03-18 01:42:50.180 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:50.180 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:50.180 -07 000000467 INF: FPGA: Recv ZSGSRD 30692
17-03-18 01:42:50.190 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:50.190 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:50.190 -07 000000611 INF: FPGA: Recv ZSGSRD 30693
17-03-18 01:42:50.200 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:50.200 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:50.200 -07 000000611 INF: FPGA: Recv ZSGSRD 30684
17-03-18 01:42:50.210 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:50.210 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:50.210 -07 000000611 INF: FPGA: Recv ZSGSRD 30689
17-03-18 01:42:50.220 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:50.230 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:50.230 -07 000000467 INF: FPGA: Recv ZSGSRD 30698
17-03-18 01:42:50.240 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:42:50.240 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:50.240 -07 000000467 INF: FPGA: Recv ZSGSRD 30698
17-03-18 01:42:50.250 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:50.250 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:50.250 -07 000000467 INF: FPGA: Recv ZSGSRD 30690
17-03-18 01:42:50.260 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:50.260 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:50.260 -07 000000467 INF: FPGA: Recv ZPIEZORD 26523
17-03-18 01:42:50.270 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:50.270 -07 000000590 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.583 V. Piezo Error = -9.2 V.
17-03-18 01:42:50.270 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30692 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30692 (-136.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30683 (-136.6 uncal um), Max = 30698 (-136.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:42:50.270 -07 000000590 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30692, posNoise = 6, negNoise = 9
17-03-18 01:42:50.270 -07 000000590 INF: Z Motor: After move to -0.137482, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:50.270 -07 000000590 INF: Z Motor: Settle wait time = 1451 ms, measure time = 120 ms (allowed 150 ms), total time = 1571 ms
17-03-18 01:42:50.270 -07 000000590 INF: Z Motor: Waiting extra 30 ms after reading position to reach expected total of 150 ms
17-03-18 01:42:50.300 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-18 01:42:50.300 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:42:50.300 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:42:50.300 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:42:50.300 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:42:50.300 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:42:50.300 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:42:50.300 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:42:50.300 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:42:50.300 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:42:50.310 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:42:50.310 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:42:50.320 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 01:42:50.320 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 01:42:50.320 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:42:50.370 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:42:50.670 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:42:50.670 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:42:50.670 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:42:50.780 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:42:50.780 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 01:42:50.780 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 450 ms to get response, and 454 ms overall
17-03-18 01:42:50.780 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 01:42:50.900 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:42:50.900 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:50.900 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:42:50.900 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 238 ms.
17-03-18 01:42:50.980 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:42:50.980 -07 000000487 INF: Autofocus start
17-03-18 01:42:50.980 -07 000000487 INF: MeasureProfile start
17-03-18 01:42:50.990 -07 000000487 INF: MeasureProfile done
17-03-18 01:42:50.990 -07 000000487 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 01:42:50.990 -07 000000487 INF: Autofocus finished
17-03-18 01:42:51.000 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:42:51.000 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 10 ms to get response, and 17 ms overall
17-03-18 01:42:51.000 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:42:51.200 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:42:51.200 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:42:51.200 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.137495271066062. ----------
17-03-18 01:42:51.200 -07 000000610 INF: Cycle	90	Tile	9	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:42:51.210 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28511, sync = True, waitForSettling = True)
17-03-18 01:42:51.210 -07 000000610 INF: Z Motor: Moving to -0.130515 mm, started at -0.137495 mm, distance = 6.98 um
17-03-18 01:42:51.210 -07 000000610 INF: FPGA: Xmit ZDACW 28511\n [Z Motor]
17-03-18 01:42:51.210 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 01:42:51.220 -07 000000610 INF: FPGA: 'ZDACW 28511' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:42:51.220 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:51.220 -07 000000487 INF: FPGA: Recv ZDACR 28511
17-03-18 01:42:51.230 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:51.230 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:42:51.390 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 3.99219,
17-03-18 01:42:51.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:51.400 -07 000000487 INF: FPGA: Recv ZSGSRD 29607
17-03-18 01:42:51.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:42:51.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:51.410 -07 000000487 INF: FPGA: Recv ZSGSRD 29607
17-03-18 01:42:51.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:51.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:51.430 -07 000000608 INF: FPGA: Recv ZSGSRD 29613
17-03-18 01:42:51.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:42:51.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:51.440 -07 000000487 INF: FPGA: Recv ZSGSRD 29602
17-03-18 01:42:51.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:51.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:51.470 -07 000000487 INF: FPGA: Recv ZSGSRD 29604
17-03-18 01:42:51.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:42:51.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:51.480 -07 000000608 INF: FPGA: Recv ZSGSRD 29609
17-03-18 01:42:51.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:51.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:51.490 -07 000000461 INF: FPGA: Recv ZSGSRD 29608
17-03-18 01:42:51.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:51.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:51.500 -07 000000608 INF: FPGA: Recv ZSGSRD 29606
17-03-18 01:42:51.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:42:51.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:51.510 -07 000000487 INF: FPGA: Recv ZSGSRD 29610
17-03-18 01:42:51.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:51.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:51.520 -07 000000591 INF: FPGA: Recv ZSGSRD 29603
17-03-18 01:42:51.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:51.530 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:51.530 -07 000000461 INF: FPGA: Recv ZPIEZORD 25108
17-03-18 01:42:51.540 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:51.540 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.351 V. Piezo Error = -9.9 V.
17-03-18 01:42:51.540 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29607 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29607 (-129.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29602 (-129.7 uncal um), Max = 29613 (-129.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:42:51.540 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29607, posNoise = 6, negNoise = 5
17-03-18 01:42:51.540 -07 000000610 INF: Z Motor: After move to -0.130515, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:51.540 -07 000000610 INF: Z Motor: MoveAbsStepped took 329 ms)
17-03-18 01:42:51.540 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:42:51.540 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:42:51.540 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:42:51.540 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:42:51.540 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:42:51.540 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:42:51.540 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:42:51.540 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:42:51.540 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:42:51.540 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:42:51.540 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:42:51.540 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:42:51.550 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:42:51.550 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:42:51.550 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:42:51.550 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:42:51.560 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:42:51.560 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:42:51.560 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 01:42:51.560 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 01:42:51.560 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28687 150\n [Camera]
17-03-18 01:42:51.760 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:42:52.150 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:42:52.150 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:42:52.150 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:52.160 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:52.160 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:42:52.160 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:42:52.160 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:42:52.160 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:52.170 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:52.170 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-18 01:42:52.290 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:42:52.290 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:42:52.350 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28687 776
17-03-18 01:42:52.490 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:42:52.550 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:42:52.550 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:42:52.550 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:52.560 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:52.560 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:42:52.560 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:42:52.560 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:42:52.560 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:52.570 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:52.570 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 01:42:52.680 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:42:52.680 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:42:52.680 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:52.690 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:42:52.690 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:42:52.690 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:52.800 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:52.800 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 01:42:52.800 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:52.800 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-18 01:42:52.870 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:42:52.880 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:42:52.880 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28687 150' command took 2 ms to send, 1310 ms to get response, and 1313 ms overall
17-03-18 01:42:52.880 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.131377
17-03-18 01:42:52.880 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13138 mm
17-03-18 01:42:52.880 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:42:52.880 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 01:42:52.880 -07 000000487 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 01:42:52.880 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:52.880 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 28699, sync = True, waitForSettling = False)
17-03-18 01:42:52.880 -07 000000512 INF: Z Motor: Moving to -0.131376 mm, started at -0.130525 mm, distance = -0.85 um
17-03-18 01:42:52.880 -07 000000461 INF: FPGA: Recv YRDPOS 136271
17-03-18 01:42:52.890 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:42:52.890 -07 000000487 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:52.890 -07 000000487 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:42:52.890 -07 000000487 INF: Y Motor: Moving 1350 steps-30
17-03-18 01:42:52.890 -07 000000512 INF: FPGA: Xmit ZDACW 28699\n [Z Motor]
17-03-18 01:42:52.890 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 01:42:52.900 -07 000000512 INF: FPGA: 'ZDACW 28699' command took 1 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:42:52.900 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:52.900 -07 000000438 INF: FPGA: Recv ZDACR 28699
17-03-18 01:42:52.910 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:42:52.910 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:52.910 -07 000000512 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-18 01:42:53.200 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:42:53.200 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:42:53.200 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:42:53.200 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:42:53.200 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:53.200 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:53.210 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:42:53.210 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:42:53.210 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms.
17-03-18 01:42:53.220 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 527 ms.
17-03-18 01:42:53.280 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 01:42:53.280 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:42:53.330 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:53.330 -07 000000591 INF: FPGA: Recv YRDPOS 137976
17-03-18 01:42:53.340 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:53.340 -07 000000487 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:53.340 -07 000000487 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 01:42:53.340 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 01:42:54.290 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:54.290 -07 000000461 INF: FPGA: Recv YRDPOS 137977
17-03-18 01:42:54.300 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:54.300 -07 000000487 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:54.320 -07 000000487 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:42:54.320 -07 000000487 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:42:54.320 -07 000000487 INF: Y Motor: Moved to 67.3716 after 1441 ms (table move)
17-03-18 01:42:54.320 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131376 mm (DAC = 28699)
17-03-18 01:42:54.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:54.330 -07 000000591 INF: FPGA: Recv ZSGSRD 29744
17-03-18 01:42:54.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 01:42:54.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:54.330 -07 000000608 INF: FPGA: Recv ZSGSRD 29743
17-03-18 01:42:54.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:42:54.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:54.340 -07 000000590 INF: FPGA: Recv ZSGSRD 29748
17-03-18 01:42:54.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:54.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:54.350 -07 000000591 INF: FPGA: Recv ZSGSRD 29741
17-03-18 01:42:54.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:54.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:54.360 -07 000000487 INF: FPGA: Recv ZSGSRD 29742
17-03-18 01:42:54.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:54.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:54.370 -07 000000591 INF: FPGA: Recv ZSGSRD 29742
17-03-18 01:42:54.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:54.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:54.380 -07 000000438 INF: FPGA: Recv ZSGSRD 29740
17-03-18 01:42:54.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:54.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:54.390 -07 000000512 INF: FPGA: Recv ZSGSRD 29738
17-03-18 01:42:54.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:54.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:54.400 -07 000000438 INF: FPGA: Recv ZSGSRD 29733
17-03-18 01:42:54.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:54.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:54.410 -07 000000591 INF: FPGA: Recv ZSGSRD 29743
17-03-18 01:42:54.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:54.420 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:54.420 -07 000000611 INF: FPGA: Recv ZPIEZORD 25303
17-03-18 01:42:54.430 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:54.430 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.379 V. Piezo Error = -9.7 V.
17-03-18 01:42:54.430 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29741 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29742 (-130.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29733 (-130.6 uncal um), Max = 29748 (-130.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:42:54.430 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29741, posNoise = 7, negNoise = 8
17-03-18 01:42:54.430 -07 000000610 INF: Z Motor: After move to -0.131376, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:54.430 -07 000000610 INF: Z Motor: Settle wait time = 1443 ms, measure time = 101 ms (allowed 150 ms), total time = 1544 ms
17-03-18 01:42:54.430 -07 000000610 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 01:42:54.480 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-18 01:42:54.480 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:42:54.480 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.131385845319248. ----------
17-03-18 01:42:54.480 -07 000000610 INF: Cycle	90	Tile	10	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:42:54.480 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28523, sync = True, waitForSettling = True)
17-03-18 01:42:54.480 -07 000000610 INF: Z Motor: Moving to -0.130570 mm, started at -0.131386 mm, distance = 0.82 um
17-03-18 01:42:54.480 -07 000000610 INF: FPGA: Xmit ZDACW 28523\n [Z Motor]
17-03-18 01:42:54.480 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 01:42:54.490 -07 000000610 INF: FPGA: 'ZDACW 28523' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:42:54.490 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:54.490 -07 000000590 INF: FPGA: Recv ZDACR 28523
17-03-18 01:42:54.500 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:54.500 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:42:54.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:54.650 -07 000000608 INF: FPGA: Recv ZSGSRD 29616
17-03-18 01:42:54.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:54.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:54.660 -07 000000591 INF: FPGA: Recv ZSGSRD 29617
17-03-18 01:42:54.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:54.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:54.670 -07 000000438 INF: FPGA: Recv ZSGSRD 29614
17-03-18 01:42:54.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:54.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:54.680 -07 000000461 INF: FPGA: Recv ZSGSRD 29616
17-03-18 01:42:54.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:54.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:54.690 -07 000000611 INF: FPGA: Recv ZSGSRD 29615
17-03-18 01:42:54.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:54.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:54.700 -07 000000591 INF: FPGA: Recv ZSGSRD 29617
17-03-18 01:42:54.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:54.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:54.710 -07 000000461 INF: FPGA: Recv ZSGSRD 29612
17-03-18 01:42:54.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:54.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:54.720 -07 000000591 INF: FPGA: Recv ZSGSRD 29608
17-03-18 01:42:54.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:54.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:54.730 -07 000000591 INF: FPGA: Recv ZSGSRD 29616
17-03-18 01:42:54.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:54.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:54.740 -07 000000591 INF: FPGA: Recv ZSGSRD 29618
17-03-18 01:42:54.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:54.750 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:54.750 -07 000000591 INF: FPGA: Recv ZPIEZORD 25129
17-03-18 01:42:54.760 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:54.760 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.352 V. Piezo Error = -9.8 V.
17-03-18 01:42:54.760 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29615 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29616 (-129.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29608 (-129.8 uncal um), Max = 29618 (-129.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:42:54.760 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29615, posNoise = 3, negNoise = 7
17-03-18 01:42:54.760 -07 000000610 INF: Z Motor: After move to -0.130570, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:54.760 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 01:42:54.760 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:42:54.760 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:42:54.760 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:42:54.760 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:42:54.760 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:42:54.760 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:42:54.760 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:42:54.760 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:42:54.770 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:42:54.770 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:42:54.770 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:42:54.770 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:42:54.770 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:42:54.770 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:42:54.770 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:42:54.770 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:42:54.780 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:42:54.780 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:42:54.780 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:42:54.780 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:42:54.780 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28699 150\n [Camera]
17-03-18 01:42:54.980 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:42:55.370 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:42:55.370 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:42:55.370 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:55.370 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:42:55.370 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:42:55.370 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:55.380 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:55.380 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:42:55.380 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:55.380 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-18 01:42:55.750 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 01:42:55.750 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 01:42:55.750 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 01:42:55.750 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:55.750 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 01:42:55.750 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:55.760 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:42:55.760 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 01:42:55.760 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:42:55.770 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 01:42:55.770 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28699 776
17-03-18 01:42:55.770 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:42:55.900 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:42:55.900 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:42:55.900 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:55.900 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:42:55.900 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:42:55.910 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:55.910 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:55.910 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:42:55.910 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:55.910 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 01:42:56.300 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 01:42:56.300 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 01:42:56.300 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:56.300 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 01:42:56.300 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:42:56.300 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:56.300 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:42:56.300 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:56.300 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:42:56.310 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 01:42:56.310 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:42:56.310 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:42:56.310 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28699 150' command took 2 ms to send, 1528 ms to get response, and 1534 ms overall
17-03-18 01:42:56.320 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.130929
17-03-18 01:42:56.320 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13093 mm
17-03-18 01:42:56.320 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:42:56.320 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 01:42:56.320 -07 000000591 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 01:42:56.320 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 28601, sync = True, waitForSettling = False)
17-03-18 01:42:56.320 -07 000000437 INF: Z Motor: Moving to -0.130927 mm, started at -0.130576 mm, distance = -0.35 um
17-03-18 01:42:56.340 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:56.340 -07 000000462 INF: FPGA: Recv YRDPOS 137977
17-03-18 01:42:56.350 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 01:42:56.350 -07 000000591 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:56.350 -07 000000591 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:42:56.350 -07 000000591 INF: Y Motor: Moving 1346 steps-24
17-03-18 01:42:56.350 -07 000000437 INF: FPGA: Xmit ZDACW 28601\n [Z Motor]
17-03-18 01:42:56.350 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 01:42:56.360 -07 000000437 INF: FPGA: 'ZDACW 28601' command took 1 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 01:42:56.370 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:42:56.380 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:56.380 -07 000000462 INF: FPGA: Recv ZDACR 28601
17-03-18 01:42:56.390 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 01:42:56.390 -07 000000437 INF: Z Motor: MoveAbsStepped took 62 ms (did NOT wait for settling yet))
17-03-18 01:42:56.740 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 01:42:56.740 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:42:56.790 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 4.037119,
17-03-18 01:42:56.810 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:56.810 -07 000000501 INF: FPGA: Recv YRDPOS 139683
17-03-18 01:42:56.820 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 01:42:56.820 -07 000000591 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:56.820 -07 000000591 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 01:42:56.820 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.118 mm/sec
17-03-18 01:42:57.290 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:42:57.290 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:42:57.770 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:42:57.770 -07 000000626 INF: FPGA: Recv YRDPOS 139683
17-03-18 01:42:57.780 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:57.780 -07 000000591 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:42:57.800 -07 000000591 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:42:57.800 -07 000000591 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:42:57.800 -07 000000591 INF: Y Motor: Moved to 68.2046 after 1482 ms (table move)
17-03-18 01:42:57.800 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130927 mm (DAC = 28601)
17-03-18 01:42:57.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:57.810 -07 000000467 INF: FPGA: Recv ZSGSRD 29676
17-03-18 01:42:57.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:57.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:57.820 -07 000000467 INF: FPGA: Recv ZSGSRD 29673
17-03-18 01:42:57.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:57.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:57.830 -07 000000467 INF: FPGA: Recv ZSGSRD 29669
17-03-18 01:42:57.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:57.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:57.840 -07 000000467 INF: FPGA: Recv ZSGSRD 29664
17-03-18 01:42:57.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:57.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:57.850 -07 000000467 INF: FPGA: Recv ZSGSRD 29665
17-03-18 01:42:57.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:57.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:57.860 -07 000000467 INF: FPGA: Recv ZSGSRD 29668
17-03-18 01:42:57.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:57.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:57.870 -07 000000461 INF: FPGA: Recv ZSGSRD 29673
17-03-18 01:42:57.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:57.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:57.880 -07 000000501 INF: FPGA: Recv ZSGSRD 29672
17-03-18 01:42:57.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:57.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:57.890 -07 000000501 INF: FPGA: Recv ZSGSRD 29674
17-03-18 01:42:57.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:57.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:57.900 -07 000000461 INF: FPGA: Recv ZSGSRD 29677
17-03-18 01:42:57.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:57.910 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:57.910 -07 000000461 INF: FPGA: Recv ZPIEZORD 25152
17-03-18 01:42:57.920 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:57.920 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.364 V. Piezo Error = -9.9 V.
17-03-18 01:42:57.920 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29671 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29672 (-130.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29664 (-130.1 uncal um), Max = 29677 (-130.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:42:57.920 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29671, posNoise = 6, negNoise = 7
17-03-18 01:42:57.920 -07 000000610 INF: Z Motor: After move to -0.130927, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:57.920 -07 000000610 INF: Z Motor: Settle wait time = 1481 ms, measure time = 112 ms (allowed 150 ms), total time = 1593 ms
17-03-18 01:42:57.920 -07 000000610 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-18 01:42:57.960 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1637 ms
17-03-18 01:42:57.960 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:42:57.960 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.130936150469324. ----------
17-03-18 01:42:57.960 -07 000000610 INF: Cycle	90	Tile	11	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:42:57.960 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28425, sync = True, waitForSettling = True)
17-03-18 01:42:57.960 -07 000000610 INF: Z Motor: Moving to -0.130121 mm, started at -0.130936 mm, distance = 0.81 um
17-03-18 01:42:57.960 -07 000000610 INF: FPGA: Xmit ZDACW 28425\n [Z Motor]
17-03-18 01:42:57.960 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 01:42:57.970 -07 000000610 INF: FPGA: 'ZDACW 28425' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:42:57.970 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:42:57.970 -07 000000512 INF: FPGA: Recv ZDACR 28425
17-03-18 01:42:57.980 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:57.980 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:42:58.130 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:58.130 -07 000000512 INF: FPGA: Recv ZSGSRD 29548
17-03-18 01:42:58.140 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:42:58.140 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:58.140 -07 000000461 INF: FPGA: Recv ZSGSRD 29549
17-03-18 01:42:58.150 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:58.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:58.150 -07 000000437 INF: FPGA: Recv ZSGSRD 29547
17-03-18 01:42:58.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:58.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:58.160 -07 000000437 INF: FPGA: Recv ZSGSRD 29541
17-03-18 01:42:58.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:58.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:58.170 -07 000000437 INF: FPGA: Recv ZSGSRD 29543
17-03-18 01:42:58.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:58.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:58.180 -07 000000487 INF: FPGA: Recv ZSGSRD 29549
17-03-18 01:42:58.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:58.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:58.190 -07 000000487 INF: FPGA: Recv ZSGSRD 29548
17-03-18 01:42:58.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:58.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:58.200 -07 000000467 INF: FPGA: Recv ZSGSRD 29540
17-03-18 01:42:58.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:58.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:58.210 -07 000000512 INF: FPGA: Recv ZSGSRD 29548
17-03-18 01:42:58.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:58.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:42:58.220 -07 000000462 INF: FPGA: Recv ZSGSRD 29537
17-03-18 01:42:58.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:58.230 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:42:58.230 -07 000000462 INF: FPGA: Recv ZPIEZORD 25014
17-03-18 01:42:58.240 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:42:58.240 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.337 V. Piezo Error = -9.9 V.
17-03-18 01:42:58.240 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29545 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29548 (-129.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29537 (-129.3 uncal um), Max = 29549 (-129.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:42:58.240 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29545, posNoise = 4, negNoise = 8
17-03-18 01:42:58.240 -07 000000610 INF: Z Motor: After move to -0.130121, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:42:58.240 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 01:42:58.240 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:42:58.240 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:42:58.240 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:42:58.240 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:42:58.240 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:42:58.240 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:42:58.240 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:42:58.240 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:42:58.240 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:42:58.240 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:42:58.240 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:42:58.240 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:42:58.250 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:42:58.250 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:42:58.250 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:42:58.250 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:42:58.260 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:42:58.260 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:42:58.260 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-18 01:42:58.260 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 01:42:58.270 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28601 150\n [Camera]
17-03-18 01:42:58.460 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:42:58.860 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:42:58.860 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:42:58.860 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:58.860 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:42:58.860 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:42:58.860 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:58.860 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:58.860 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:42:58.860 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:58.860 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 01:42:59.250 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 01:42:59.250 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 01:42:59.250 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:59.250 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 01:42:59.250 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 01:42:59.250 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:59.250 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:59.250 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:42:59.260 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:42:59.260 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:42:59.270 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28601 776
17-03-18 01:42:59.270 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:42:59.390 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:42:59.390 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:42:59.390 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:42:59.390 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:42:59.390 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 01:42:59.390 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:42:59.390 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:42:59.390 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:42:59.390 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:42:59.390 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 01:42:59.770 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 01:42:59.770 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 01:42:59.770 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:59.770 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 01:42:59.770 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 01:42:59.770 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:42:59.770 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:42:59.780 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:42:59.780 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 01:42:59.780 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 01:42:59.790 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:42:59.790 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:42:59.790 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28601 150' command took 2 ms to send, 1511 ms to get response, and 1521 ms overall
17-03-18 01:42:59.790 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.130741
17-03-18 01:42:59.790 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13074 mm
17-03-18 01:42:59.790 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:42:59.790 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 01:42:59.790 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 28560, sync = True, waitForSettling = False)
17-03-18 01:42:59.790 -07 000000626 INF: Z Motor: Moving to -0.130739 mm, started at -0.130127 mm, distance = -0.61 um
17-03-18 01:42:59.790 -07 000000626 INF: FPGA: Xmit ZDACW 28560\n [Z Motor]
17-03-18 01:42:59.790 -07 000000467 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 01:42:59.800 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:43:00.710 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 01:43:00.710 -07 000000608 INF: FPGA: Recv YRDPOS 139684
17-03-18 01:43:00.710 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 900 ms to get response, and 913 ms overall
17-03-18 01:43:00.710 -07 000000467 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:43:00.710 -07 000000626 INF: FPGA: 'ZDACW 28560' command took 0 ms to send, 910 ms to get response, and 914 ms overall
17-03-18 01:43:00.710 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:43:00.710 -07 000000608 INF: FPGA: Recv ZDACR 28560
17-03-18 01:43:00.710 -07 000000467 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:43:00.710 -07 000000467 INF: Y Motor: Moving 1340 steps-16
17-03-18 01:43:00.720 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:43:00.720 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:43:00.720 -07 000000626 INF: Z Motor: MoveAbsStepped took 923 ms (did NOT wait for settling yet))
17-03-18 01:43:01.090 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 01:43:01.090 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-18 01:43:01.140 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:43:01.140 -07 000000626 INF: FPGA: Recv YRDPOS 141366
17-03-18 01:43:01.150 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:43:01.150 -07 000000467 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:43:01.150 -07 000000467 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 01:43:01.150 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.838 mm, average velocity = 2.188 mm/sec
17-03-18 01:43:02.100 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:43:02.100 -07 000000626 INF: FPGA: Recv YRDPOS 141367
17-03-18 01:43:02.110 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:02.110 -07 000000467 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:43:02.130 -07 000000467 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:43:02.130 -07 000000467 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:43:02.130 -07 000000467 INF: Y Motor: Moved to 69.0269 after 2342 ms (table move)
17-03-18 01:43:02.140 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130739 mm (DAC = 28560)
17-03-18 01:43:02.140 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:02.140 -07 000000611 INF: FPGA: Recv ZSGSRD 29643
17-03-18 01:43:02.150 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:02.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:02.160 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 4.026244,
17-03-18 01:43:02.160 -07 000000626 INF: FPGA: Recv ZSGSRD 29634
17-03-18 01:43:02.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:43:02.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:02.180 -07 000000608 INF: FPGA: Recv ZSGSRD 29644
17-03-18 01:43:02.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:43:02.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:02.190 -07 000000462 INF: FPGA: Recv ZSGSRD 29642
17-03-18 01:43:02.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:02.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:02.210 -07 000000462 INF: FPGA: Recv ZSGSRD 29644
17-03-18 01:43:02.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:43:02.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:02.220 -07 000000502 INF: FPGA: Recv ZSGSRD 29643
17-03-18 01:43:02.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:02.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:02.250 -07 000000626 INF: FPGA: Recv ZSGSRD 29645
17-03-18 01:43:02.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:43:02.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:02.260 -07 000000467 INF: FPGA: Recv ZSGSRD 29641
17-03-18 01:43:02.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:02.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:02.270 -07 000000611 INF: FPGA: Recv ZSGSRD 29645
17-03-18 01:43:02.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:43:02.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:02.280 -07 000000438 INF: FPGA: Recv ZSGSRD 29642
17-03-18 01:43:02.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:02.290 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:43:02.290 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:43:02.290 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:43:02.290 -07 000000608 INF: FPGA: Recv ZPIEZORD 25175
17-03-18 01:43:02.300 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:02.300 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.358 V. Piezo Error = -9.8 V.
17-03-18 01:43:02.300 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29642 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29643 (-130.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29634 (-129.9 uncal um), Max = 29645 (-130.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:43:02.300 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29642, posNoise = 3, negNoise = 8
17-03-18 01:43:02.300 -07 000000610 INF: Z Motor: After move to -0.130739, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:43:02.300 -07 000000610 INF: Z Motor: Settle wait time = 2344 ms, measure time = 160 ms (allowed 150 ms), total time = 2504 ms
17-03-18 01:43:02.300 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 160 ms, longer than max expected time of 150 ms
17-03-18 01:43:02.300 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2506 ms
17-03-18 01:43:02.300 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:43:02.300 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.130749848317213. ----------
17-03-18 01:43:02.300 -07 000000610 INF: Cycle	90	Tile	12	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:43:02.300 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28384, sync = True, waitForSettling = True)
17-03-18 01:43:02.300 -07 000000610 INF: Z Motor: Moving to -0.129934 mm, started at -0.130750 mm, distance = 0.82 um
17-03-18 01:43:02.300 -07 000000610 INF: FPGA: Xmit ZDACW 28384\n [Z Motor]
17-03-18 01:43:02.300 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 01:43:02.310 -07 000000610 INF: FPGA: 'ZDACW 28384' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:43:02.310 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:43:02.310 -07 000000626 INF: FPGA: Recv ZDACR 28384
17-03-18 01:43:02.320 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:02.320 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:43:02.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:02.470 -07 000000626 INF: FPGA: Recv ZSGSRD 29522
17-03-18 01:43:02.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:43:02.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:02.480 -07 000000502 INF: FPGA: Recv ZSGSRD 29515
17-03-18 01:43:02.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:02.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:02.490 -07 000000462 INF: FPGA: Recv ZSGSRD 29521
17-03-18 01:43:02.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:02.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:02.500 -07 000000502 INF: FPGA: Recv ZSGSRD 29513
17-03-18 01:43:02.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:02.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:02.510 -07 000000608 INF: FPGA: Recv ZSGSRD 29519
17-03-18 01:43:02.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:02.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:02.520 -07 000000502 INF: FPGA: Recv ZSGSRD 29515
17-03-18 01:43:02.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:02.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:02.530 -07 000000462 INF: FPGA: Recv ZSGSRD 29516
17-03-18 01:43:02.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:02.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:02.540 -07 000000438 INF: FPGA: Recv ZSGSRD 29517
17-03-18 01:43:02.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:02.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:02.550 -07 000000608 INF: FPGA: Recv ZSGSRD 29517
17-03-18 01:43:02.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:02.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:02.560 -07 000000467 INF: FPGA: Recv ZSGSRD 29506
17-03-18 01:43:02.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:02.570 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:43:02.570 -07 000000502 INF: FPGA: Recv ZPIEZORD 25041
17-03-18 01:43:02.580 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:02.580 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.331 V. Piezo Error = -9.8 V.
17-03-18 01:43:02.580 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29516 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29516 (-129.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29506 (-129.1 uncal um), Max = 29522 (-129.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 01:43:02.580 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29516, posNoise = 6, negNoise = 10
17-03-18 01:43:02.580 -07 000000610 INF: Z Motor: After move to -0.129934, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:43:02.580 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 01:43:02.580 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:43:02.580 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:43:02.580 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:43:02.580 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:43:02.580 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:43:02.580 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:43:02.580 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:43:02.580 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:43:02.580 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:43:02.580 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:43:02.580 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:43:02.580 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:43:02.590 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:43:02.590 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:43:02.590 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:43:02.590 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:43:02.600 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:43:02.600 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:43:02.600 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:43:02.600 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:43:02.600 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28560 150\n [Camera]
17-03-18 01:43:02.800 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:43:03.190 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:43:03.190 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:43:03.190 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:43:03.190 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:43:03.190 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 01:43:03.190 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:43:03.190 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:43:03.190 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:43:03.190 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:43:03.190 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 01:43:03.380 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28560 776
17-03-18 01:43:03.530 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:43:03.590 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:43:03.590 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:43:03.590 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:03.590 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:43:03.590 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:43:03.590 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:03.600 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:43:03.600 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:43:03.600 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:43:03.600 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:43:03.720 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:43:03.720 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:43:03.720 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:43:03.720 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:43:03.720 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 01:43:03.720 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:43:03.720 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:43:03.720 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:43:03.720 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:43:03.720 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 01:43:03.910 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:43:03.910 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:43:03.910 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28560 150' command took 2 ms to send, 1307 ms to get response, and 1314 ms overall
17-03-18 01:43:03.910 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:43:03.910 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.129940397587351. ------
17-03-18 01:43:03.920 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:43:04.120 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 01:43:04.120 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:43:04.120 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:04.120 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:43:04.120 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:43:04.120 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:04.120 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:43:04.130 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:43:04.130 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:43:04.130 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 01:43:04.140 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13638 mm
17-03-18 01:43:04.140 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:43:04.140 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:43:04.140 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 214 ms to get response, and 219 ms overall
17-03-18 01:43:04.140 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:43:04.140 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 01:43:04.140 -07 000000467 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-18 01:43:04.150 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:43:04.710 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 29792, sync = True, waitForSettling = False)
17-03-18 01:43:04.710 -07 000000590 INF: Z Motor: Moving to -0.136379 mm, started at -0.129940 mm, distance = -6.44 um
17-03-18 01:43:04.710 -07 000000590 INF: FPGA: Xmit ZDACW 29792\n [Z Motor]
17-03-18 01:43:05.710 -07 000000591 INF: FPGA: Recv YRDPOS 141367
17-03-18 01:43:05.710 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:43:05.710 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:43:05.710 -07 000000590 INF: FPGA: 'ZDACW 29792' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-18 01:43:05.710 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:43:05.710 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1560 ms to get response, and 1564 ms overall
17-03-18 01:43:05.710 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1550 ms to get response, and 1564 ms overall
17-03-18 01:43:05.710 -07 000000467 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:43:05.710 -07 000000467 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:43:05.710 -07 000000467 INF: Y Motor: Moving 1353 steps-33
17-03-18 01:43:05.710 -07 000000611 INF: FPGA: Recv ZDACR 29792
17-03-18 01:43:05.720 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:05.720 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:43:05.720 -07 000000590 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-18 01:43:06.090 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 01:43:06.090 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 01:43:06.140 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:43:06.140 -07 000000611 INF: FPGA: Recv YRDPOS 143079
17-03-18 01:43:06.150 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:43:06.150 -07 000000467 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:43:06.150 -07 000000467 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 01:43:06.150 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.846 mm, average velocity = 2.202 mm/sec
17-03-18 01:43:07.100 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:43:07.100 -07 000000591 INF: FPGA: Recv YRDPOS 143079
17-03-18 01:43:07.110 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:43:07.110 -07 000000467 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:43:07.130 -07 000000467 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:43:07.130 -07 000000467 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:43:07.130 -07 000000467 INF: Y Motor: Moved to 69.8628 after 2991 ms (table move)
17-03-18 01:43:07.140 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136379 mm (DAC = 29792)
17-03-18 01:43:07.140 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:07.140 -07 000000611 INF: FPGA: Recv ZSGSRD 30519
17-03-18 01:43:07.150 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:43:07.150 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:07.150 -07 000000591 INF: FPGA: Recv ZSGSRD 30523
17-03-18 01:43:07.160 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:07.160 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:07.160 -07 000000591 INF: FPGA: Recv ZSGSRD 30508
17-03-18 01:43:07.170 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:07.170 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:07.170 -07 000000591 INF: FPGA: Recv ZSGSRD 30520
17-03-18 01:43:07.180 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:07.180 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:07.180 -07 000000611 INF: FPGA: Recv ZSGSRD 30521
17-03-18 01:43:07.190 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:07.190 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:07.190 -07 000000467 INF: FPGA: Recv ZSGSRD 30518
17-03-18 01:43:07.200 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:07.200 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:07.200 -07 000000467 INF: FPGA: Recv ZSGSRD 30516
17-03-18 01:43:07.210 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:07.210 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:07.210 -07 000000591 INF: FPGA: Recv ZSGSRD 30518
17-03-18 01:43:07.220 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:43:07.220 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:07.220 -07 000000467 INF: FPGA: Recv ZSGSRD 30518
17-03-18 01:43:07.230 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:07.230 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:07.230 -07 000000611 INF: FPGA: Recv ZSGSRD 30523
17-03-18 01:43:07.240 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:07.240 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:43:07.240 -07 000000467 INF: FPGA: Recv ZPIEZORD 26324
17-03-18 01:43:07.250 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:07.250 -07 000000502 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.546 V. Piezo Error = -9.2 V.
17-03-18 01:43:07.250 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30518 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30518 (-135.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30508 (-135.5 uncal um), Max = 30523 (-135.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 01:43:07.250 -07 000000502 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30518, posNoise = 5, negNoise = 10
17-03-18 01:43:07.250 -07 000000502 INF: Z Motor: After move to -0.136379, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:43:07.250 -07 000000502 INF: Z Motor: Settle wait time = 2431 ms, measure time = 108 ms (allowed 150 ms), total time = 2539 ms
17-03-18 01:43:07.250 -07 000000502 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:43:07.290 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:43:07.290 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:43:07.300 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3158 ms
17-03-18 01:43:07.300 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:43:07.300 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:43:07.300 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:43:07.300 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:43:07.300 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:43:07.300 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:43:07.300 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:43:07.300 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:43:07.300 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:43:07.310 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:43:07.310 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:43:07.320 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 01:43:07.320 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 01:43:07.320 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:43:07.370 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:43:07.570 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 4.018051,
17-03-18 01:43:07.670 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:43:07.670 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:43:07.670 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:43:07.670 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-18 01:43:07.700 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:43:07.710 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 01:43:07.710 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 01:43:07.790 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:43:07.790 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:07.800 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:43:07.800 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:43:07.810 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:43:07.810 -07 000000512 INF: Autofocus start
17-03-18 01:43:07.810 -07 000000512 INF: MeasureProfile start
17-03-18 01:43:07.810 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:43:07.820 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:43:07.820 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:43:07.820 -07 000000512 INF: MeasureProfile done
17-03-18 01:43:07.820 -07 000000512 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:43:07.820 -07 000000512 INF: Autofocus finished
17-03-18 01:43:08.020 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:43:08.020 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:43:08.020 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.136377458153396. ----------
17-03-18 01:43:08.020 -07 000000610 INF: Cycle	90	Tile	13	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:43:08.030 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28317, sync = True, waitForSettling = True)
17-03-18 01:43:08.030 -07 000000610 INF: Z Motor: Moving to -0.129627 mm, started at -0.136377 mm, distance = 6.75 um
17-03-18 01:43:08.030 -07 000000610 INF: FPGA: Xmit ZDACW 28317\n [Z Motor]
17-03-18 01:43:08.030 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 01:43:08.040 -07 000000610 INF: FPGA: 'ZDACW 28317' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:43:08.040 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:43:08.040 -07 000000467 INF: FPGA: Recv ZDACR 28317
17-03-18 01:43:08.050 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:08.050 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:43:08.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:08.200 -07 000000461 INF: FPGA: Recv ZSGSRD 29461
17-03-18 01:43:08.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:43:08.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:08.210 -07 000000467 INF: FPGA: Recv ZSGSRD 29467
17-03-18 01:43:08.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:08.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:08.220 -07 000000611 INF: FPGA: Recv ZSGSRD 29460
17-03-18 01:43:08.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:08.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:08.230 -07 000000461 INF: FPGA: Recv ZSGSRD 29468
17-03-18 01:43:08.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:08.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:08.240 -07 000000512 INF: FPGA: Recv ZSGSRD 29464
17-03-18 01:43:08.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:08.250 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:08.250 -07 000000461 INF: FPGA: Recv ZSGSRD 29468
17-03-18 01:43:08.260 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:08.260 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:08.260 -07 000000512 INF: FPGA: Recv ZSGSRD 29463
17-03-18 01:43:08.270 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:08.270 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:08.270 -07 000000501 INF: FPGA: Recv ZSGSRD 29469
17-03-18 01:43:08.280 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:08.280 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:08.280 -07 000000437 INF: FPGA: Recv ZSGSRD 29471
17-03-18 01:43:08.290 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:08.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:08.290 -07 000000461 INF: FPGA: Recv ZSGSRD 29472
17-03-18 01:43:08.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:08.300 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:43:08.300 -07 000000502 INF: FPGA: Recv ZPIEZORD 24945
17-03-18 01:43:08.310 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:08.310 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.321 V. Piezo Error = -9.9 V.
17-03-18 01:43:08.310 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29466 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29468 (-128.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29460 (-128.8 uncal um), Max = 29472 (-128.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:43:08.310 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29466, posNoise = 6, negNoise = 6
17-03-18 01:43:08.310 -07 000000610 INF: Z Motor: After move to -0.129627, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:43:08.310 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:43:08.310 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:43:08.310 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:43:08.310 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:43:08.310 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:43:08.310 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:43:08.310 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:43:08.310 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:43:08.310 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:43:08.310 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:43:08.310 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:43:08.310 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:43:08.310 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:43:08.320 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:43:08.320 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:43:08.320 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:43:08.320 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:43:08.330 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 01:43:08.330 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 01:43:08.330 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 01:43:08.330 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 01:43:08.330 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28493 150\n [Camera]
17-03-18 01:43:08.530 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:43:08.930 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:43:08.930 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:43:08.930 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:43:08.930 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:43:08.930 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 01:43:08.930 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:43:08.930 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:43:08.930 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:43:08.930 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:43:08.930 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 01:43:09.120 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28493 776
17-03-18 01:43:09.270 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:43:09.320 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 01:43:09.320 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 01:43:09.320 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:09.320 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:43:09.320 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:43:09.320 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:43:09.320 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:09.330 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:43:09.330 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:43:09.330 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:43:09.460 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:43:09.460 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:43:09.460 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:43:09.460 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:43:09.460 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 01:43:09.460 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:43:09.460 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:43:09.460 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:43:09.460 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:43:09.460 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 01:43:09.650 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:43:09.650 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:43:09.650 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28493 150' command took 2 ms to send, 1303 ms to get response, and 1315 ms overall
17-03-18 01:43:09.650 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.129518
17-03-18 01:43:09.650 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.12952 mm
17-03-18 01:43:09.650 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:43:09.650 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 01:43:09.650 -07 000000487 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 01:43:09.650 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:43:09.650 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 28293, sync = True, waitForSettling = False)
17-03-18 01:43:09.650 -07 000000437 INF: Z Motor: Moving to -0.129517 mm, started at -0.129619 mm, distance = 0.10 um
17-03-18 01:43:09.660 -07 000000437 INF: FPGA: Xmit ZDACW 28293\n [Z Motor]
17-03-18 01:43:09.660 -07 000000512 INF: FPGA: Recv YRDPOS 143079
17-03-18 01:43:09.660 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:43:09.660 -07 000000487 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:43:09.660 -07 000000487 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:43:09.660 -07 000000487 INF: Y Motor: Moving 1344 steps-20
17-03-18 01:43:09.660 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 01:43:09.670 -07 000000437 INF: FPGA: 'ZDACW 28293' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:43:09.670 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:43:09.670 -07 000000501 INF: FPGA: Recv ZDACR 28293
17-03-18 01:43:09.680 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:09.680 -07 000000437 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-18 01:43:09.680 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:43:09.860 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 01:43:09.860 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:43:09.860 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:09.870 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 01:43:09.870 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 01:43:09.870 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:09.870 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 01:43:09.870 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 01:43:09.870 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:43:09.880 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 01:43:10.050 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 01:43:10.050 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 368 ms to get response, and 396 ms overall
17-03-18 01:43:10.100 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:43:10.100 -07 000000611 INF: FPGA: Recv YRDPOS 144768
17-03-18 01:43:10.110 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:43:10.110 -07 000000487 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:43:10.110 -07 000000487 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 01:43:10.110 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-18 01:43:11.060 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:43:11.060 -07 000000437 INF: FPGA: Recv YRDPOS 144769
17-03-18 01:43:11.070 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:43:11.070 -07 000000487 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:43:11.090 -07 000000487 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:43:11.090 -07 000000487 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:43:11.090 -07 000000487 INF: Y Motor: Moved to 70.6880 after 1440 ms (table move)
17-03-18 01:43:11.100 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129517 mm (DAC = 28293)
17-03-18 01:43:11.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:11.100 -07 000000467 INF: FPGA: Recv ZSGSRD 29450
17-03-18 01:43:11.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:11.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:11.110 -07 000000462 INF: FPGA: Recv ZSGSRD 29454
17-03-18 01:43:11.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:11.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:11.120 -07 000000467 INF: FPGA: Recv ZSGSRD 29455
17-03-18 01:43:11.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:11.130 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:11.130 -07 000000512 INF: FPGA: Recv ZSGSRD 29450
17-03-18 01:43:11.140 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:11.140 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:11.140 -07 000000462 INF: FPGA: Recv ZSGSRD 29439
17-03-18 01:43:11.150 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:11.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:11.150 -07 000000591 INF: FPGA: Recv ZSGSRD 29448
17-03-18 01:43:11.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:11.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:11.160 -07 000000591 INF: FPGA: Recv ZSGSRD 29451
17-03-18 01:43:11.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:11.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:11.170 -07 000000608 INF: FPGA: Recv ZSGSRD 29448
17-03-18 01:43:11.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:11.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:11.180 -07 000000501 INF: FPGA: Recv ZSGSRD 29450
17-03-18 01:43:11.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:11.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:11.190 -07 000000591 INF: FPGA: Recv ZSGSRD 29454
17-03-18 01:43:11.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:11.200 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:43:11.200 -07 000000487 INF: FPGA: Recv ZPIEZORD 24956
17-03-18 01:43:11.210 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:11.210 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.317 V. Piezo Error = -9.9 V.
17-03-18 01:43:11.210 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29450 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29450 (-128.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29439 (-128.7 uncal um), Max = 29455 (-128.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 01:43:11.210 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29450, posNoise = 5, negNoise = 11
17-03-18 01:43:11.210 -07 000000610 INF: Z Motor: After move to -0.129517, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:43:11.210 -07 000000610 INF: Z Motor: Settle wait time = 1442 ms, measure time = 110 ms (allowed 150 ms), total time = 1552 ms
17-03-18 01:43:11.210 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:43:11.250 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-18 01:43:11.250 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:43:11.250 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.129516399585995. ----------
17-03-18 01:43:11.250 -07 000000610 INF: Cycle	90	Tile	14	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:43:11.250 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28116, sync = True, waitForSettling = True)
17-03-18 01:43:11.250 -07 000000610 INF: Z Motor: Moving to -0.128707 mm, started at -0.129516 mm, distance = 0.81 um
17-03-18 01:43:11.250 -07 000000610 INF: FPGA: Xmit ZDACW 28116\n [Z Motor]
17-03-18 01:43:11.250 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 01:43:11.260 -07 000000610 INF: FPGA: 'ZDACW 28116' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:43:11.260 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:43:11.260 -07 000000501 INF: FPGA: Recv ZDACR 28116
17-03-18 01:43:11.270 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:11.270 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:43:11.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:11.420 -07 000000608 INF: FPGA: Recv ZSGSRD 29326
17-03-18 01:43:11.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:43:11.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:11.430 -07 000000501 INF: FPGA: Recv ZSGSRD 29328
17-03-18 01:43:11.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:11.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:11.440 -07 000000487 INF: FPGA: Recv ZSGSRD 29327
17-03-18 01:43:11.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:11.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:11.450 -07 000000501 INF: FPGA: Recv ZSGSRD 29329
17-03-18 01:43:11.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:11.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:11.460 -07 000000501 INF: FPGA: Recv ZSGSRD 29328
17-03-18 01:43:11.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:11.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:11.470 -07 000000591 INF: FPGA: Recv ZSGSRD 29322
17-03-18 01:43:11.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:11.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:11.480 -07 000000487 INF: FPGA: Recv ZSGSRD 29324
17-03-18 01:43:11.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:11.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:11.490 -07 000000501 INF: FPGA: Recv ZSGSRD 29325
17-03-18 01:43:11.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:11.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:11.500 -07 000000487 INF: FPGA: Recv ZSGSRD 29325
17-03-18 01:43:11.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:43:11.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:11.510 -07 000000487 INF: FPGA: Recv ZSGSRD 29325
17-03-18 01:43:11.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:11.520 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:43:11.520 -07 000000591 INF: FPGA: Recv ZPIEZORD 24788
17-03-18 01:43:11.530 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:11.530 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.290 V. Piezo Error = -9.9 V.
17-03-18 01:43:11.530 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29326 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29326 (-127.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29322 (-127.9 uncal um), Max = 29329 (-128.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:43:11.530 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29326, posNoise = 3, negNoise = 4
17-03-18 01:43:11.530 -07 000000610 INF: Z Motor: After move to -0.128707, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:43:11.530 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 01:43:11.530 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:43:11.530 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:43:11.530 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:43:11.530 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:43:11.530 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:43:11.530 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:43:11.530 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:43:11.530 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:43:11.530 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:43:11.530 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:43:11.530 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:43:11.530 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:43:11.540 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:43:11.540 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:43:11.540 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:43:11.540 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:43:11.550 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:43:11.550 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:43:11.550 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:43:11.550 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:43:11.560 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28293 150\n [Camera]
17-03-18 01:43:11.760 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:43:12.150 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:43:12.150 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:43:12.150 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:43:12.150 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:43:12.150 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 01:43:12.150 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:43:12.150 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:43:12.150 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:43:12.150 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:43:12.150 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 01:43:12.290 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:43:12.290 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:43:12.340 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28293 778
17-03-18 01:43:12.490 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:43:12.540 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:43:12.540 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:43:12.540 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:12.550 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:43:12.550 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:43:12.550 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 01:43:12.550 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:43:12.550 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:12.550 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:43:12.560 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 01:43:12.680 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:43:12.680 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:43:12.680 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:43:12.680 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:43:12.680 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 01:43:12.680 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:43:12.680 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:43:12.680 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:43:12.680 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:43:12.680 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 01:43:12.870 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:43:12.870 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:43:12.870 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28293 150' command took 2 ms to send, 1305 ms to get response, and 1314 ms overall
17-03-18 01:43:12.870 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.129413
17-03-18 01:43:12.880 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.12941 mm
17-03-18 01:43:12.880 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:43:12.880 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 01:43:12.880 -07 000000501 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 01:43:12.880 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:43:12.880 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 28270, sync = True, waitForSettling = False)
17-03-18 01:43:12.880 -07 000000487 INF: Z Motor: Moving to -0.129412 mm, started at -0.128720 mm, distance = -0.69 um
17-03-18 01:43:12.880 -07 000000591 INF: FPGA: Recv YRDPOS 144769
17-03-18 01:43:12.890 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:43:12.890 -07 000000501 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:43:12.890 -07 000000501 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:43:12.890 -07 000000501 INF: Y Motor: Moving 1351 steps-31
17-03-18 01:43:12.890 -07 000000487 INF: FPGA: Xmit ZDACW 28270\n [Z Motor]
17-03-18 01:43:12.890 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 01:43:12.900 -07 000000487 INF: FPGA: 'ZDACW 28270' command took 1 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:43:12.900 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:43:12.900 -07 000000467 INF: FPGA: Recv ZDACR 28270
17-03-18 01:43:12.910 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:12.910 -07 000000487 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-18 01:43:12.910 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:43:12.930 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 4.020806,
17-03-18 01:43:13.080 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 01:43:13.080 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:43:13.080 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:13.090 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 01:43:13.090 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:43:13.090 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:13.090 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:43:13.090 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:43:13.090 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:43:13.100 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 01:43:13.280 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 01:43:13.280 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 01:43:13.330 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:43:13.330 -07 000000424 INF: FPGA: Recv YRDPOS 146469
17-03-18 01:43:13.340 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:43:13.340 -07 000000501 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:43:13.340 -07 000000501 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 01:43:13.340 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.845 mm, average velocity = 2.112 mm/sec
17-03-18 01:43:14.290 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:43:14.290 -07 000000438 INF: FPGA: Recv YRDPOS 146469
17-03-18 01:43:14.300 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:43:14.300 -07 000000501 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:43:14.320 -07 000000501 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:43:14.320 -07 000000501 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:43:14.320 -07 000000501 INF: Y Motor: Moved to 71.5181 after 1444 ms (table move)
17-03-18 01:43:14.330 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129412 mm (DAC = 28270)
17-03-18 01:43:14.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:14.330 -07 000000591 INF: FPGA: Recv ZSGSRD 29435
17-03-18 01:43:14.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:14.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:14.340 -07 000000467 INF: FPGA: Recv ZSGSRD 29432
17-03-18 01:43:14.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:14.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:14.350 -07 000000438 INF: FPGA: Recv ZSGSRD 29436
17-03-18 01:43:14.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:14.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:14.360 -07 000000501 INF: FPGA: Recv ZSGSRD 29437
17-03-18 01:43:14.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:14.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:14.370 -07 000000438 INF: FPGA: Recv ZSGSRD 29433
17-03-18 01:43:14.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:14.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:14.380 -07 000000467 INF: FPGA: Recv ZSGSRD 29433
17-03-18 01:43:14.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:14.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:14.390 -07 000000438 INF: FPGA: Recv ZSGSRD 29431
17-03-18 01:43:14.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:14.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:14.400 -07 000000487 INF: FPGA: Recv ZSGSRD 29432
17-03-18 01:43:14.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:14.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:14.410 -07 000000591 INF: FPGA: Recv ZSGSRD 29436
17-03-18 01:43:14.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:14.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:14.420 -07 000000467 INF: FPGA: Recv ZSGSRD 29437
17-03-18 01:43:14.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:14.430 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:43:14.430 -07 000000502 INF: FPGA: Recv ZPIEZORD 24974
17-03-18 01:43:14.440 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:14.440 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.314 V. Piezo Error = -9.8 V.
17-03-18 01:43:14.440 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29434 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29434 (-128.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29431 (-128.6 uncal um), Max = 29437 (-128.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:43:14.440 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29434, posNoise = 3, negNoise = 3
17-03-18 01:43:14.440 -07 000000610 INF: Z Motor: After move to -0.129412, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:43:14.440 -07 000000610 INF: Z Motor: Settle wait time = 1446 ms, measure time = 110 ms (allowed 150 ms), total time = 1556 ms
17-03-18 01:43:14.440 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:43:14.480 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-18 01:43:14.480 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:43:14.480 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.129413612191727. ----------
17-03-18 01:43:14.480 -07 000000610 INF: Cycle	90	Tile	15	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:43:14.480 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28093, sync = True, waitForSettling = True)
17-03-18 01:43:14.480 -07 000000610 INF: Z Motor: Moving to -0.128602 mm, started at -0.129414 mm, distance = 0.81 um
17-03-18 01:43:14.480 -07 000000610 INF: FPGA: Xmit ZDACW 28093\n [Z Motor]
17-03-18 01:43:14.480 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 01:43:14.490 -07 000000610 INF: FPGA: 'ZDACW 28093' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:43:14.490 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:43:14.490 -07 000000502 INF: FPGA: Recv ZDACR 28093
17-03-18 01:43:14.500 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:14.500 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:43:14.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:14.650 -07 000000424 INF: FPGA: Recv ZSGSRD 29314
17-03-18 01:43:14.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:43:14.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:14.660 -07 000000467 INF: FPGA: Recv ZSGSRD 29319
17-03-18 01:43:14.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:14.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:14.670 -07 000000591 INF: FPGA: Recv ZSGSRD 29309
17-03-18 01:43:14.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:14.680 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:14.680 -07 000000438 INF: FPGA: Recv ZSGSRD 29310
17-03-18 01:43:14.690 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:14.690 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:14.690 -07 000000487 INF: FPGA: Recv ZSGSRD 29309
17-03-18 01:43:14.700 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:14.700 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:14.700 -07 000000467 INF: FPGA: Recv ZSGSRD 29310
17-03-18 01:43:14.710 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:14.710 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:14.710 -07 000000424 INF: FPGA: Recv ZSGSRD 29303
17-03-18 01:43:14.720 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:14.720 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:14.720 -07 000000467 INF: FPGA: Recv ZSGSRD 29303
17-03-18 01:43:14.730 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:14.730 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:14.730 -07 000000467 INF: FPGA: Recv ZSGSRD 29312
17-03-18 01:43:14.740 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:14.740 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:14.740 -07 000000424 INF: FPGA: Recv ZSGSRD 29309
17-03-18 01:43:14.750 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:14.750 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:43:14.750 -07 000000424 INF: FPGA: Recv ZPIEZORD 24798
17-03-18 01:43:14.760 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:14.760 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.287 V. Piezo Error = -9.9 V.
17-03-18 01:43:14.760 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29310 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29310 (-127.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29303 (-127.8 uncal um), Max = 29319 (-127.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:43:14.760 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29310, posNoise = 9, negNoise = 7
17-03-18 01:43:14.760 -07 000000610 INF: Z Motor: After move to -0.128602, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:43:14.760 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 01:43:14.760 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:43:14.760 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:43:14.760 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:43:14.760 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:43:14.760 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:43:14.760 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:43:14.760 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:43:14.760 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:43:14.760 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:43:14.760 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:43:14.770 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:43:14.770 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:43:14.770 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:43:14.770 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:43:14.770 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:43:14.770 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:43:14.780 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:43:14.780 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:43:14.780 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:43:14.780 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:43:14.790 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28270 150\n [Camera]
17-03-18 01:43:14.990 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:43:15.380 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:43:15.380 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:43:15.380 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:43:15.380 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:43:15.380 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 01:43:15.380 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:43:15.380 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:43:15.380 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:43:15.380 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:43:15.380 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-18 01:43:15.760 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 01:43:15.760 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 01:43:15.760 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:15.760 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 01:43:15.760 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 01:43:15.760 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:15.760 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:43:15.760 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 01:43:15.760 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:43:15.770 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 01:43:15.770 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28270 776
17-03-18 01:43:15.780 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:43:15.910 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:43:15.910 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:43:15.910 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:43:15.910 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:43:15.910 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) start.
17-03-18 01:43:15.910 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:43:15.910 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:43:15.910 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:43:16.070 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:43:16.070 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 01:43:16.320 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 01:43:16.320 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:43:16.320 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:16.320 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:43:16.320 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 01:43:16.330 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:43:16.330 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:43:16.330 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28270 150' command took 2 ms to send, 1533 ms to get response, and 1541 ms overall
17-03-18 01:43:16.330 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.128969
17-03-18 01:43:16.330 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.12897 mm
17-03-18 01:43:16.330 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:43:16.330 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 01:43:16.330 -07 000000424 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 01:43:16.330 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:43:16.440 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 01:43:16.440 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 01:43:16.440 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:16.450 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:43:16.450 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 539 ms.
17-03-18 01:43:16.460 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 28173, sync = True, waitForSettling = False)
17-03-18 01:43:16.460 -07 000000467 INF: Z Motor: Moving to -0.128968 mm, started at -0.128617 mm, distance = -0.35 um
17-03-18 01:43:16.460 -07 000000467 INF: FPGA: Xmit ZDACW 28173\n [Z Motor]
17-03-18 01:43:17.130 -07 000000611 INF: FPGA: Recv YRDPOS 146470
17-03-18 01:43:17.130 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 01:43:17.130 -07 000000467 INF: FPGA: 'ZDACW 28173' command took 0 ms to send, 661 ms to get response, and 664 ms overall
17-03-18 01:43:17.130 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:43:17.130 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 790 ms to get response, and 792 ms overall
17-03-18 01:43:17.130 -07 000000424 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:43:17.130 -07 000000611 INF: FPGA: Recv ZDACR 28173
17-03-18 01:43:17.130 -07 000000424 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:43:17.130 -07 000000424 INF: Y Motor: Moving 1350 steps-30
17-03-18 01:43:17.140 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:43:17.140 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:43:17.140 -07 000000467 INF: Z Motor: MoveAbsStepped took 673 ms (did NOT wait for settling yet))
17-03-18 01:43:17.290 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:43:17.290 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:43:17.520 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 01:43:17.520 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 383 ms overall
17-03-18 01:43:17.560 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:43:17.560 -07 000000437 INF: FPGA: Recv YRDPOS 148171
17-03-18 01:43:17.570 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:43:17.570 -07 000000424 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:43:17.570 -07 000000424 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:43:17.570 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.845 mm, average velocity = 2.205 mm/sec
17-03-18 01:43:18.290 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 4.02213,
17-03-18 01:43:18.520 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:43:18.520 -07 000000461 INF: FPGA: Recv YRDPOS 148171
17-03-18 01:43:18.530 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:43:18.530 -07 000000424 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:43:18.550 -07 000000424 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:43:18.550 -07 000000424 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:43:18.550 -07 000000424 INF: Y Motor: Moved to 72.3491 after 2218 ms (table move)
17-03-18 01:43:18.550 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128968 mm (DAC = 28173)
17-03-18 01:43:18.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:18.560 -07 000000467 INF: FPGA: Recv ZSGSRD 29368
17-03-18 01:43:18.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 3 ms overall
17-03-18 01:43:18.560 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:18.560 -07 000000626 INF: FPGA: Recv ZSGSRD 29359
17-03-18 01:43:18.570 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:43:18.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:18.570 -07 000000512 INF: FPGA: Recv ZSGSRD 29355
17-03-18 01:43:18.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:18.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:18.580 -07 000000437 INF: FPGA: Recv ZSGSRD 29365
17-03-18 01:43:18.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:18.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:18.590 -07 000000512 INF: FPGA: Recv ZSGSRD 29361
17-03-18 01:43:18.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:18.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:18.600 -07 000000437 INF: FPGA: Recv ZSGSRD 29369
17-03-18 01:43:18.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:18.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:18.610 -07 000000611 INF: FPGA: Recv ZSGSRD 29369
17-03-18 01:43:18.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:18.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:18.620 -07 000000437 INF: FPGA: Recv ZSGSRD 29362
17-03-18 01:43:18.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:18.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:18.630 -07 000000512 INF: FPGA: Recv ZSGSRD 29372
17-03-18 01:43:18.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:18.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:18.640 -07 000000461 INF: FPGA: Recv ZSGSRD 29361
17-03-18 01:43:18.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:18.650 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:43:18.650 -07 000000512 INF: FPGA: Recv ZPIEZORD 24921
17-03-18 01:43:18.660 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:18.660 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.299 V. Piezo Error = -9.8 V.
17-03-18 01:43:18.660 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.0 um, Read 10 ADC samples: Avg = 29364 (-128.2 uncal um), Error = 0.8 uncal um, Median = 29364 (-128.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29355 (-128.1 uncal um), Max = 29372 (-128.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:43:18.660 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29364, posNoise = 8, negNoise = 9
17-03-18 01:43:18.660 -07 000000610 INF: Z Motor: After move to -0.128968, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:43:18.660 -07 000000610 INF: Z Motor: Settle wait time = 2092 ms, measure time = 101 ms (allowed 150 ms), total time = 2193 ms
17-03-18 01:43:18.660 -07 000000610 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 01:43:18.710 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2373 ms
17-03-18 01:43:18.710 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:43:18.710 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.128963917341804. ----------
17-03-18 01:43:18.710 -07 000000610 INF: Cycle	90	Tile	16	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:43:18.710 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27997, sync = True, waitForSettling = True)
17-03-18 01:43:18.710 -07 000000610 INF: Z Motor: Moving to -0.128162 mm, started at -0.128964 mm, distance = 0.80 um
17-03-18 01:43:18.710 -07 000000610 INF: FPGA: Xmit ZDACW 27997\n [Z Motor]
17-03-18 01:43:18.710 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 01:43:18.720 -07 000000610 INF: FPGA: 'ZDACW 27997' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:43:18.720 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:43:18.720 -07 000000626 INF: FPGA: Recv ZDACR 27997
17-03-18 01:43:18.730 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:18.730 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:43:18.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:18.880 -07 000000512 INF: FPGA: Recv ZSGSRD 29241
17-03-18 01:43:18.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:43:18.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:18.890 -07 000000424 INF: FPGA: Recv ZSGSRD 29238
17-03-18 01:43:18.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:18.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:18.900 -07 000000626 INF: FPGA: Recv ZSGSRD 29246
17-03-18 01:43:18.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:18.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:18.910 -07 000000461 INF: FPGA: Recv ZSGSRD 29235
17-03-18 01:43:18.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:18.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:18.920 -07 000000437 INF: FPGA: Recv ZSGSRD 29244
17-03-18 01:43:18.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:43:18.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:18.930 -07 000000467 INF: FPGA: Recv ZSGSRD 29244
17-03-18 01:43:18.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:18.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:18.940 -07 000000437 INF: FPGA: Recv ZSGSRD 29240
17-03-18 01:43:18.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:18.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:18.950 -07 000000611 INF: FPGA: Recv ZSGSRD 29247
17-03-18 01:43:18.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:18.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:18.960 -07 000000461 INF: FPGA: Recv ZSGSRD 29237
17-03-18 01:43:18.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:18.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:18.970 -07 000000611 INF: FPGA: Recv ZSGSRD 29239
17-03-18 01:43:18.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:18.980 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:43:18.980 -07 000000467 INF: FPGA: Recv ZPIEZORD 24776
17-03-18 01:43:18.990 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:18.990 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.272 V. Piezo Error = -9.8 V.
17-03-18 01:43:18.990 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29241 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29240 (-127.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29235 (-127.4 uncal um), Max = 29247 (-127.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:43:18.990 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29241, posNoise = 6, negNoise = 6
17-03-18 01:43:18.990 -07 000000610 INF: Z Motor: After move to -0.128162, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:43:18.990 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 01:43:18.990 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:43:18.990 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:43:18.990 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:43:18.990 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:43:18.990 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:43:18.990 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:43:18.990 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:43:18.990 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:43:18.990 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:43:18.990 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:43:18.990 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:43:18.990 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:43:18.990 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:43:18.990 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:43:18.990 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:43:18.990 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:43:19.000 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:43:19.000 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 01:43:19.000 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:43:19.000 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 01:43:19.010 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28173 150\n [Camera]
17-03-18 01:43:19.210 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:43:19.600 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:43:19.600 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:43:19.600 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:43:19.600 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:43:19.600 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:43:19.600 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:43:19.600 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:43:19.600 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:43:19.610 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:43:19.610 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:43:19.980 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 01:43:19.980 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 01:43:19.980 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:19.980 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 01:43:19.980 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 01:43:19.980 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:19.980 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:43:19.980 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 01:43:19.980 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:43:19.990 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 01:43:19.990 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28173 776
17-03-18 01:43:19.990 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:43:20.130 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:43:20.130 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:43:20.130 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:43:20.130 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:43:20.130 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:43:20.130 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:43:20.250 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:43:20.250 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 01:43:20.250 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:43:20.250 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 01:43:20.650 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 01:43:20.650 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:43:20.650 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:20.650 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:43:20.650 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:43:20.650 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:20.650 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:43:20.650 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-18 01:43:20.650 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:43:20.660 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 528 ms.
17-03-18 01:43:20.660 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:43:20.660 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:43:20.660 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28173 150' command took 2 ms to send, 1647 ms to get response, and 1655 ms overall
17-03-18 01:43:20.670 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:43:20.670 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.128173739248367. ------
17-03-18 01:43:20.670 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:43:20.670 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13474 mm
17-03-18 01:43:20.670 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:43:21.210 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:43:21.210 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 530 ms to get response, and 535 ms overall
17-03-18 01:43:21.210 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:43:21.210 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 01:43:21.210 -07 000000608 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 01:43:21.220 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:43:22.210 -07 000000438 INF: FPGA: Recv YRDPOS 148171
17-03-18 01:43:22.210 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:43:22.210 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 980 ms to get response, and 996 ms overall
17-03-18 01:43:22.210 -07 000000608 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:43:22.210 -07 000000608 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:43:22.210 -07 000000608 INF: Y Motor: Moving 1350 steps-28
17-03-18 01:43:22.210 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:43:22.210 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-18 01:43:22.210 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29433, sync = True, waitForSettling = False)
17-03-18 01:43:22.210 -07 000000438 INF: Z Motor: Moving to -0.134736 mm, started at -0.128174 mm, distance = -6.56 um
17-03-18 01:43:22.220 -07 000000438 INF: FPGA: Xmit ZDACW 29433\n [Z Motor]
17-03-18 01:43:23.210 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 01:43:23.210 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:43:23.210 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 01:43:23.210 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-18 01:43:23.210 -07 000000438 INF: FPGA: 'ZDACW 29433' command took 0 ms to send, 980 ms to get response, and 997 ms overall
17-03-18 01:43:23.210 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:43:23.210 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:43:23.210 -07 000000502 INF: FPGA: Recv ZDACR 29433
17-03-18 01:43:23.220 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:23.220 -07 000000438 INF: Z Motor: MoveAbsStepped took 1007 ms (did NOT wait for settling yet))
17-03-18 01:43:23.250 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:43:23.250 -07 000000438 INF: FPGA: Recv YRDPOS 149863
17-03-18 01:43:23.260 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:43:23.260 -07 000000608 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:43:23.260 -07 000000608 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 01:43:23.260 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 999 ms, distance = 0.843 mm, average velocity = 0.844 mm/sec
17-03-18 01:43:23.830 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 3.99219,
17-03-18 01:43:24.210 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:43:24.210 -07 000000590 INF: FPGA: Recv YRDPOS 149863
17-03-18 01:43:24.220 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:43:24.220 -07 000000608 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:43:24.240 -07 000000608 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:43:24.240 -07 000000608 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:43:24.240 -07 000000608 INF: Y Motor: Moved to 73.1753 after 3035 ms (table move)
17-03-18 01:43:24.250 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134736 mm (DAC = 29433)
17-03-18 01:43:24.250 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:24.250 -07 000000590 INF: FPGA: Recv ZSGSRD 30267
17-03-18 01:43:24.260 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:43:24.260 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:24.260 -07 000000591 INF: FPGA: Recv ZSGSRD 30267
17-03-18 01:43:24.270 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:24.270 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:24.270 -07 000000438 INF: FPGA: Recv ZSGSRD 30269
17-03-18 01:43:24.280 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:24.280 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:24.280 -07 000000501 INF: FPGA: Recv ZSGSRD 30272
17-03-18 01:43:24.290 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:24.290 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:24.290 -07 000000438 INF: FPGA: Recv ZSGSRD 30259
17-03-18 01:43:24.300 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:24.300 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:24.300 -07 000000608 INF: FPGA: Recv ZSGSRD 30265
17-03-18 01:43:24.310 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:24.310 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:24.310 -07 000000502 INF: FPGA: Recv ZSGSRD 30260
17-03-18 01:43:24.320 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:24.320 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:24.320 -07 000000467 INF: FPGA: Recv ZSGSRD 30257
17-03-18 01:43:24.330 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:24.330 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:24.330 -07 000000501 INF: FPGA: Recv ZSGSRD 30266
17-03-18 01:43:24.340 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:24.340 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:24.340 -07 000000608 INF: FPGA: Recv ZSGSRD 30263
17-03-18 01:43:24.350 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:24.350 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:43:24.350 -07 000000467 INF: FPGA: Recv ZPIEZORD 26105
17-03-18 01:43:24.360 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:24.360 -07 000000626 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.491 V. Piezo Error = -9.1 V.
17-03-18 01:43:24.360 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30264 (-134.0 uncal um), Error = 0.8 uncal um, Median = 30266 (-134.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30257 (-133.9 uncal um), Max = 30272 (-134.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:43:24.360 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30264, posNoise = 8, negNoise = 7
17-03-18 01:43:24.360 -07 000000626 INF: Z Motor: After move to -0.134736, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:43:24.360 -07 000000626 INF: Z Motor: Settle wait time = 2039 ms, measure time = 108 ms (allowed 150 ms), total time = 2147 ms
17-03-18 01:43:24.360 -07 000000626 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:43:24.410 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3733 ms
17-03-18 01:43:24.410 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:43:24.410 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:43:24.410 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:43:24.410 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:43:24.410 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:43:24.410 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:43:24.410 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:43:24.410 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:43:24.410 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:43:24.420 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:43:24.420 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:43:24.430 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 01:43:24.430 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 01:43:24.430 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:43:24.470 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:43:24.770 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:43:24.770 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:43:24.770 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:43:24.780 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-18 01:43:24.810 -07 000000438 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:43:24.810 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 01:43:24.810 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 01:43:24.900 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:43:24.900 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:24.900 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:43:24.900 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:43:25.010 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:43:25.010 -07 000000487 INF: Autofocus start
17-03-18 01:43:25.010 -07 000000487 INF: MeasureProfile start
17-03-18 01:43:25.010 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:43:25.020 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:43:25.020 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:43:25.020 -07 000000487 INF: MeasureProfile done
17-03-18 01:43:25.020 -07 000000487 INF: X=-5  Z correction [um]=-0.02774208
17-03-18 01:43:25.020 -07 000000487 INF: Autofocus finished
17-03-18 01:43:25.220 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:43:25.220 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:43:25.220 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.134745708269389. ----------
17-03-18 01:43:25.220 -07 000000610 INF: Cycle	90	Tile	17	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:43:25.230 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27940, sync = True, waitForSettling = True)
17-03-18 01:43:25.230 -07 000000610 INF: Z Motor: Moving to -0.127901 mm, started at -0.134746 mm, distance = 6.84 um
17-03-18 01:43:25.230 -07 000000610 INF: FPGA: Xmit ZDACW 27940\n [Z Motor]
17-03-18 01:43:25.230 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:43:25.240 -07 000000610 INF: FPGA: 'ZDACW 27940' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:25.240 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:43:25.240 -07 000000502 INF: FPGA: Recv ZDACR 27940
17-03-18 01:43:25.250 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:25.250 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:43:25.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:25.400 -07 000000467 INF: FPGA: Recv ZSGSRD 29194
17-03-18 01:43:25.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:43:25.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:25.410 -07 000000501 INF: FPGA: Recv ZSGSRD 29206
17-03-18 01:43:25.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:25.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:25.420 -07 000000590 INF: FPGA: Recv ZSGSRD 29201
17-03-18 01:43:25.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:25.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:25.430 -07 000000438 INF: FPGA: Recv ZSGSRD 29200
17-03-18 01:43:25.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:25.440 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:25.440 -07 000000438 INF: FPGA: Recv ZSGSRD 29201
17-03-18 01:43:25.450 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:25.450 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:25.450 -07 000000608 INF: FPGA: Recv ZSGSRD 29198
17-03-18 01:43:25.460 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:25.460 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:25.460 -07 000000591 INF: FPGA: Recv ZSGSRD 29204
17-03-18 01:43:25.470 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:25.470 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:25.470 -07 000000502 INF: FPGA: Recv ZSGSRD 29193
17-03-18 01:43:25.480 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:25.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:25.480 -07 000000501 INF: FPGA: Recv ZSGSRD 29207
17-03-18 01:43:25.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:25.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:25.490 -07 000000467 INF: FPGA: Recv ZSGSRD 29199
17-03-18 01:43:25.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:25.500 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:43:25.500 -07 000000590 INF: FPGA: Recv ZPIEZORD 24713
17-03-18 01:43:25.510 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:25.510 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.263 V. Piezo Error = -9.8 V.
17-03-18 01:43:25.510 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29200 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29200 (-127.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29193 (-127.1 uncal um), Max = 29207 (-127.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:43:25.510 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29200, posNoise = 7, negNoise = 7
17-03-18 01:43:25.510 -07 000000610 INF: Z Motor: After move to -0.127901, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:43:25.510 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:43:25.510 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:43:25.510 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:43:25.510 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:43:25.510 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:43:25.510 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:43:25.510 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:43:25.510 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:43:25.510 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:43:25.510 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:43:25.510 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:43:25.510 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:43:25.510 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:43:25.520 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:43:25.520 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:43:25.520 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:43:25.520 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:43:25.530 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:43:25.530 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:43:25.530 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:43:25.530 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:43:25.530 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28117 150\n [Camera]
17-03-18 01:43:25.730 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:43:26.120 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:43:26.120 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:43:26.130 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:43:26.130 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:43:26.130 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:43:26.130 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:43:26.130 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:43:26.130 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 01:43:26.130 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:43:26.130 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 01:43:26.320 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28117 776
17-03-18 01:43:26.470 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:43:26.500 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 01:43:26.500 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 01:43:26.500 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:26.500 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 01:43:26.500 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 01:43:26.500 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:26.510 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:43:26.510 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:43:26.510 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 01:43:26.520 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 01:43:26.660 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:43:26.660 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:43:26.660 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:43:26.660 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:43:26.660 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:43:26.660 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:43:26.670 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:43:26.670 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 01:43:26.670 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:43:26.670 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 01:43:26.850 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:43:26.850 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:43:26.850 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28117 150' command took 2 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-18 01:43:26.850 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.128239
17-03-18 01:43:26.850 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.12824 mm
17-03-18 01:43:26.850 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:43:26.850 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 01:43:26.850 -07 000000590 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 01:43:26.850 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 28014, sync = True, waitForSettling = False)
17-03-18 01:43:26.850 -07 000000502 INF: Z Motor: Moving to -0.128240 mm, started at -0.127910 mm, distance = -0.33 um
17-03-18 01:43:26.850 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:43:26.860 -07 000000502 INF: FPGA: Xmit ZDACW 28014\n [Z Motor]
17-03-18 01:43:27.040 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 01:43:27.040 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 01:43:27.040 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:27.050 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 01:43:27.050 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 01:43:27.050 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:27.050 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:43:27.050 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:43:27.050 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:43:27.060 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:43:27.070 -07 000000626 INF: FPGA: Recv YRDPOS 149864
17-03-18 01:43:27.070 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:43:27.070 -07 000000502 INF: FPGA: 'ZDACW 28014' command took 0 ms to send, 204 ms to get response, and 216 ms overall
17-03-18 01:43:27.070 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:43:27.070 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 214 ms to get response, and 216 ms overall
17-03-18 01:43:27.070 -07 000000590 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:43:27.070 -07 000000626 INF: FPGA: Recv ZDACR 28014
17-03-18 01:43:27.070 -07 000000590 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:43:27.070 -07 000000590 INF: Y Motor: Moving 1355 steps-35
17-03-18 01:43:27.080 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:43:27.080 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:43:27.080 -07 000000502 INF: Z Motor: MoveAbsStepped took 221 ms (did NOT wait for settling yet))
17-03-18 01:43:27.290 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:43:27.290 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:43:27.450 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 01:43:27.450 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 379 ms overall
17-03-18 01:43:27.490 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:43:27.490 -07 000000626 INF: FPGA: Recv YRDPOS 151567
17-03-18 01:43:27.500 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:43:27.500 -07 000000590 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:43:27.500 -07 000000590 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 01:43:27.500 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.847 mm, average velocity = 2.236 mm/sec
17-03-18 01:43:28.450 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:43:28.450 -07 000000626 INF: FPGA: Recv YRDPOS 151568
17-03-18 01:43:28.460 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:43:28.460 -07 000000590 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:43:28.480 -07 000000590 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:43:28.480 -07 000000590 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:43:28.480 -07 000000590 INF: Y Motor: Moved to 74.0078 after 1621 ms (table move)
17-03-18 01:43:28.480 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128240 mm (DAC = 28014)
17-03-18 01:43:28.480 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:28.480 -07 000000626 INF: FPGA: Recv ZSGSRD 29256
17-03-18 01:43:28.490 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:43:28.490 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:28.490 -07 000000590 INF: FPGA: Recv ZSGSRD 29252
17-03-18 01:43:28.500 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:28.500 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:28.500 -07 000000502 INF: FPGA: Recv ZSGSRD 29252
17-03-18 01:43:28.510 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:28.510 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:28.510 -07 000000626 INF: FPGA: Recv ZSGSRD 29260
17-03-18 01:43:28.520 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:28.520 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:28.520 -07 000000590 INF: FPGA: Recv ZSGSRD 29251
17-03-18 01:43:28.530 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:28.530 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:28.530 -07 000000502 INF: FPGA: Recv ZSGSRD 29255
17-03-18 01:43:28.540 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:28.540 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:28.540 -07 000000626 INF: FPGA: Recv ZSGSRD 29251
17-03-18 01:43:28.550 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:28.550 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:28.550 -07 000000590 INF: FPGA: Recv ZSGSRD 29245
17-03-18 01:43:28.560 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:28.570 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:28.570 -07 000000626 INF: FPGA: Recv ZSGSRD 29253
17-03-18 01:43:28.580 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:43:28.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:28.580 -07 000000626 INF: FPGA: Recv ZSGSRD 29253
17-03-18 01:43:28.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:28.590 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:43:28.590 -07 000000461 INF: FPGA: Recv ZPIEZORD 24817
17-03-18 01:43:28.600 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:28.600 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.275 V. Piezo Error = -9.7 V.
17-03-18 01:43:28.600 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29253 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29252 (-127.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29245 (-127.4 uncal um), Max = 29260 (-127.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:43:28.600 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29253, posNoise = 7, negNoise = 8
17-03-18 01:43:28.600 -07 000000610 INF: Z Motor: After move to -0.128240, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:43:28.600 -07 000000610 INF: Z Motor: Settle wait time = 1623 ms, measure time = 119 ms (allowed 150 ms), total time = 1742 ms
17-03-18 01:43:28.600 -07 000000610 INF: Z Motor: Waiting extra 31 ms after reading position to reach expected total of 150 ms
17-03-18 01:43:28.640 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1785 ms
17-03-18 01:43:28.640 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:43:28.640 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.128250829794068. ----------
17-03-18 01:43:28.640 -07 000000610 INF: Cycle	90	Tile	18	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:43:28.640 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27837, sync = True, waitForSettling = True)
17-03-18 01:43:28.640 -07 000000610 INF: Z Motor: Moving to -0.127430 mm, started at -0.128251 mm, distance = 0.82 um
17-03-18 01:43:28.640 -07 000000610 INF: FPGA: Xmit ZDACW 27837\n [Z Motor]
17-03-18 01:43:28.640 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:43:28.650 -07 000000610 INF: FPGA: 'ZDACW 27837' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:43:28.650 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:43:28.650 -07 000000590 INF: FPGA: Recv ZDACR 27837
17-03-18 01:43:28.660 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:28.660 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:43:28.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:28.810 -07 000000461 INF: FPGA: Recv ZSGSRD 29130
17-03-18 01:43:28.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:28.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:28.820 -07 000000590 INF: FPGA: Recv ZSGSRD 29130
17-03-18 01:43:28.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:28.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:28.830 -07 000000590 INF: FPGA: Recv ZSGSRD 29125
17-03-18 01:43:28.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:28.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:28.840 -07 000000437 INF: FPGA: Recv ZSGSRD 29128
17-03-18 01:43:28.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:43:28.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:28.850 -07 000000462 INF: FPGA: Recv ZSGSRD 29122
17-03-18 01:43:28.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:28.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:28.860 -07 000000502 INF: FPGA: Recv ZSGSRD 29123
17-03-18 01:43:28.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:28.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:28.890 -07 000000502 INF: FPGA: Recv ZSGSRD 29127
17-03-18 01:43:28.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:43:28.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:28.920 -07 000000590 INF: FPGA: Recv ZSGSRD 29125
17-03-18 01:43:28.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:43:28.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:28.940 -07 000000462 INF: FPGA: Recv ZSGSRD 29125
17-03-18 01:43:28.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:43:28.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:28.950 -07 000000590 INF: FPGA: Recv ZSGSRD 29128
17-03-18 01:43:28.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:28.970 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:43:28.970 -07 000000437 INF: FPGA: Recv ZPIEZORD 24637
17-03-18 01:43:28.980 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:43:28.980 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.248 V. Piezo Error = -9.8 V.
17-03-18 01:43:28.980 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.4 um, Read 10 ADC samples: Avg = 29126 (-126.7 uncal um), Error = 0.8 uncal um, Median = 29126 (-126.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29122 (-126.6 uncal um), Max = 29130 (-126.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:43:28.980 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29126, posNoise = 4, negNoise = 4
17-03-18 01:43:28.980 -07 000000610 INF: Z Motor: After move to -0.127430, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:43:28.980 -07 000000610 INF: Z Motor: MoveAbsStepped took 336 ms)
17-03-18 01:43:28.980 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:43:28.980 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:43:28.980 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:43:28.980 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:43:28.980 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:43:28.980 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:43:28.980 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:43:28.980 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:43:28.980 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:43:28.980 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:43:28.980 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:43:28.980 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:43:28.980 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:43:28.980 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:43:28.990 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:43:28.990 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:43:29.000 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:43:29.000 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:43:29.000 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:43:29.000 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:43:29.000 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28014 150\n [Camera]
17-03-18 01:43:29.200 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 4.001704,
17-03-18 01:43:29.200 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:43:29.600 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:43:29.600 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:43:29.600 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:43:29.600 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:43:29.600 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-18 01:43:29.600 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:43:29.600 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:43:29.600 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:43:29.600 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:43:29.600 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 01:43:29.790 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28014 776
17-03-18 01:43:29.940 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:43:29.980 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 01:43:29.980 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 01:43:29.980 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:29.980 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:43:29.990 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 01:43:29.990 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 01:43:29.990 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:29.990 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:43:29.990 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:43:29.990 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 01:43:30.130 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:43:30.130 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:43:30.130 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:43:30.130 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:43:30.130 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 01:43:30.130 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:43:30.130 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:43:30.130 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:43:30.130 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:43:30.130 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 01:43:30.400 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:43:30.400 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:43:30.400 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28014 150' command took 2 ms to send, 1384 ms to get response, and 1395 ms overall
17-03-18 01:43:30.400 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.127384
17-03-18 01:43:30.400 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.12738 mm
17-03-18 01:43:30.400 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:43:30.410 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 01:43:30.410 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 27827, sync = True, waitForSettling = False)
17-03-18 01:43:30.410 -07 000000487 INF: Z Motor: Moving to -0.127384 mm, started at -0.127435 mm, distance = 0.05 um
17-03-18 01:43:30.410 -07 000000487 INF: FPGA: Xmit ZDACW 27827\n [Z Motor]
17-03-18 01:43:30.410 -07 000000611 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 01:43:30.410 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 01:43:30.420 -07 000000487 INF: FPGA: 'ZDACW 27827' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:30.420 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:43:30.420 -07 000000424 INF: FPGA: Recv ZDACR 27827
17-03-18 01:43:30.430 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:30.430 -07 000000487 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-18 01:43:30.430 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:43:30.430 -07 000000512 INF: FPGA: Recv YRDPOS 151568
17-03-18 01:43:30.440 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:43:30.440 -07 000000611 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:43:30.440 -07 000000611 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:43:30.440 -07 000000611 INF: Y Motor: Moving 1352 steps-31
17-03-18 01:43:30.440 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:43:30.520 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 01:43:30.520 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 01:43:30.520 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:30.520 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 01:43:30.520 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 01:43:30.520 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:30.520 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:43:30.520 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:43:30.520 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:43:30.530 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:43:30.810 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 01:43:30.810 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 01:43:30.840 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:43:30.850 -07 000000512 INF: FPGA: Recv YRDPOS 153254
17-03-18 01:43:30.850 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:43:30.850 -07 000000611 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:43:30.850 -07 000000611 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 01:43:30.850 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.845 mm, average velocity = 2.235 mm/sec
17-03-18 01:43:31.800 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:43:31.800 -07 000000512 INF: FPGA: Recv YRDPOS 153254
17-03-18 01:43:31.810 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:43:31.810 -07 000000611 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:43:31.820 -07 000000611 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:43:31.820 -07 000000611 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:43:31.820 -07 000000611 INF: Y Motor: Moved to 74.8311 after 1417 ms (table move)
17-03-18 01:43:31.830 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.127384 mm (DAC = 27827)
17-03-18 01:43:31.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:31.830 -07 000000611 INF: FPGA: Recv ZSGSRD 29120
17-03-18 01:43:31.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:31.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:31.840 -07 000000611 INF: FPGA: Recv ZSGSRD 29117
17-03-18 01:43:31.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:31.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:31.850 -07 000000611 INF: FPGA: Recv ZSGSRD 29116
17-03-18 01:43:31.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:31.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:31.860 -07 000000462 INF: FPGA: Recv ZSGSRD 29119
17-03-18 01:43:31.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:31.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:31.870 -07 000000487 INF: FPGA: Recv ZSGSRD 29124
17-03-18 01:43:31.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:31.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:31.880 -07 000000502 INF: FPGA: Recv ZSGSRD 29127
17-03-18 01:43:31.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:43:31.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:31.890 -07 000000611 INF: FPGA: Recv ZSGSRD 29126
17-03-18 01:43:31.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:31.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:31.900 -07 000000502 INF: FPGA: Recv ZSGSRD 29122
17-03-18 01:43:31.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:31.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:31.910 -07 000000611 INF: FPGA: Recv ZSGSRD 29113
17-03-18 01:43:31.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:31.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:31.920 -07 000000611 INF: FPGA: Recv ZSGSRD 29116
17-03-18 01:43:31.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:31.930 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:43:31.930 -07 000000611 INF: FPGA: Recv ZPIEZORD 24659
17-03-18 01:43:31.940 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:31.940 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.246 V. Piezo Error = -9.8 V.
17-03-18 01:43:31.940 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.4 um, Read 10 ADC samples: Avg = 29120 (-126.6 uncal um), Error = 0.8 uncal um, Median = 29120 (-126.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29113 (-126.6 uncal um), Max = 29127 (-126.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:43:31.940 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29120, posNoise = 7, negNoise = 7
17-03-18 01:43:31.940 -07 000000610 INF: Z Motor: After move to -0.127384, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:43:31.940 -07 000000610 INF: Z Motor: Settle wait time = 1420 ms, measure time = 110 ms (allowed 150 ms), total time = 1530 ms
17-03-18 01:43:31.940 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:43:31.980 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1572 ms
17-03-18 01:43:31.980 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:43:31.980 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.127396409579214. ----------
17-03-18 01:43:31.980 -07 000000610 INF: Cycle	90	Tile	19	Exposure Settings		A	391	G	188	T	188	C	391
17-03-18 01:43:31.980 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27650, sync = True, waitForSettling = True)
17-03-18 01:43:31.980 -07 000000610 INF: Z Motor: Moving to -0.126574 mm, started at -0.127396 mm, distance = 0.82 um
17-03-18 01:43:31.980 -07 000000610 INF: FPGA: Xmit ZDACW 27650\n [Z Motor]
17-03-18 01:43:31.980 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 01:43:31.990 -07 000000610 INF: FPGA: 'ZDACW 27650' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:43:31.990 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:43:31.990 -07 000000611 INF: FPGA: Recv ZDACR 27650
17-03-18 01:43:32.000 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:32.000 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:43:32.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:32.150 -07 000000611 INF: FPGA: Recv ZSGSRD 28992
17-03-18 01:43:32.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:43:32.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:32.160 -07 000000611 INF: FPGA: Recv ZSGSRD 28995
17-03-18 01:43:32.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:32.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:32.170 -07 000000502 INF: FPGA: Recv ZSGSRD 28998
17-03-18 01:43:32.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:32.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:32.180 -07 000000611 INF: FPGA: Recv ZSGSRD 28992
17-03-18 01:43:32.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:32.190 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:32.190 -07 000000611 INF: FPGA: Recv ZSGSRD 28992
17-03-18 01:43:32.200 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:32.200 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:32.200 -07 000000502 INF: FPGA: Recv ZSGSRD 28995
17-03-18 01:43:32.210 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:32.210 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:32.210 -07 000000611 INF: FPGA: Recv ZSGSRD 28997
17-03-18 01:43:32.220 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:32.220 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:32.220 -07 000000611 INF: FPGA: Recv ZSGSRD 28991
17-03-18 01:43:32.230 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:32.230 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:32.230 -07 000000611 INF: FPGA: Recv ZSGSRD 28990
17-03-18 01:43:32.240 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:32.240 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:43:32.240 -07 000000502 INF: FPGA: Recv ZSGSRD 28990
17-03-18 01:43:32.250 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:32.250 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:43:32.250 -07 000000502 INF: FPGA: Recv ZPIEZORD 24483
17-03-18 01:43:32.260 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:43:32.260 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.219 V. Piezo Error = -9.9 V.
17-03-18 01:43:32.260 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.6 um, Read 10 ADC samples: Avg = 28993 (-125.8 uncal um), Error = 0.8 uncal um, Median = 28992 (-125.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 28990 (-125.8 uncal um), Max = 28998 (-125.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:43:32.260 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28993, posNoise = 5, negNoise = 3
17-03-18 01:43:32.260 -07 000000610 INF: Z Motor: After move to -0.126574, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:43:32.260 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 01:43:32.260 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:43:32.260 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:43:32.260 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:43:32.260 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:43:32.260 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:43:32.260 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:43:32.260 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:43:32.260 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:43:32.260 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:43:32.260 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:43:32.260 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:43:32.260 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:43:32.270 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:43:32.270 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:43:32.270 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:43:32.270 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:43:32.280 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:43:32.280 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:43:32.280 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:43:32.280 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:43:32.290 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:43:32.290 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 27827 150\n [Camera]
17-03-18 01:43:32.290 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 89. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1408, R2=1462, Total=2870. Warn if over 250 bubbles per interval.
17-03-18 01:43:32.490 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:43:32.880 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-18 01:43:32.880 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-18 01:43:32.880 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:43:32.880 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-18 01:43:32.880 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-18 01:43:32.880 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:43:32.880 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:43:32.880 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 01:43:32.890 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:43:32.890 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:43:33.070 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27827 776
17-03-18 01:43:33.220 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-18 01:43:33.260 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 01:43:33.260 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 01:43:33.260 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:33.260 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:43:33.260 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 01:43:33.260 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 01:43:33.260 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 01:43:33.260 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:33.270 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:43:33.270 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 01:43:33.410 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-18 01:43:33.410 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-18 01:43:33.410 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:43:33.410 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-18 01:43:33.410 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-18 01:43:33.410 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:43:33.420 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:43:33.420 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-18 01:43:33.420 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:43:33.420 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 01:43:33.600 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-18 01:43:33.600 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:43:33.600 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 27827 150' command took 2 ms to send, 1305 ms to get response, and 1313 ms overall
17-03-18 01:43:33.800 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 01:43:33.800 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 01:43:33.800 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:33.800 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 01:43:33.800 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 01:43:33.800 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:43:33.810 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:43:33.810 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:43:33.810 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:43:33.810 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 01:43:33.810 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:43:33.850 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 01:43:33.850 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 01:43:33.890 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 01:43:33.910 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-18 01:43:33.910 -07 000000610 INF: Imaging Cycle 90: ScanTilesCommand Cycle 90 time end. Duration was 147094 ms.
17-03-18 01:43:33.910 -07 000000610 INF: =================== Cycle #90 ===================
17-03-18 01:43:33.910 -07 000000610 INF: ===================  ===================
17-03-18 01:43:33.910 -07 000000438 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 01:43:33.910 -07 000000611 INF: FPGA: Recv EXLED1ADCR 26
17-03-18 01:43:33.920 -07 000000438 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:43:33.920 -07 000000438 INF: GreenLED: Using Green data: Photodiode ADC 26 --> 0.0 mW (old method), or 1.9 mW (new method). Difference = 1.9 mW
17-03-18 01:43:33.920 -07 000000438 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 90, FrontChillerTemperature: 4.001704, FrontChillerHeatSinkTemperature: 0.288248, AmbientTemperature: 18.78304, FlowCellCompartmentTemperature: 21.99544, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.69607, GreenLEDSensorTemperature: 24.80466, PhotodiodePowerAdcGreen: 26, PhotodiodePowerMwGreen: 1.927049
17-03-18 01:43:34.000 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.