17-03-18 01:52:43.741 -07 000000610 INF: =================== Cycle #93 ===================
17-03-18 01:52:43.741 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 01:52:43.741 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8311 mm, delta = 0.5495 mm
17-03-18 01:52:43.741 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:52:43.741 -07 000000626 INF: FPGA: Recv YRDPOS 153255
17-03-18 01:52:43.751 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:52:43.751 -07 000000610 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:52:43.751 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 01:52:43.751 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 01:52:43.751 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 01:52:43.871 -07 000000626 INF: FPGA: Recv YMVTO 154377 873
17-03-18 01:52:43.871 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 114 ms to get response, and 117 ms overall
17-03-18 01:52:43.871 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-18 01:52:43.871 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.550 mm) should take 878 steps, but required 873 steps (0.546 mm). Slippage = -0.003 mm (-0.01%).
17-03-18 01:52:43.871 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 118 ms, distance = 0.550 mm, average velocity = 4.657 mm/sec
17-03-18 01:52:45.448 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 3.999021,
17-03-18 01:52:46.855 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:52:46.855 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1422, R2=1478, Total=2900. Warn if over 250 bubbles per interval.
17-03-18 01:52:46.865 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:52:46.865 -07 000000626 INF: FPGA: Recv YRDPOS 154380
17-03-18 01:52:46.875 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:52:46.875 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:52:46.895 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:52:46.895 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 3 counts (0.001 mm)
17-03-18 01:52:46.895 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3160 ms
17-03-18 01:52:46.895 -07 000000610 INF: =================== Cycle #93, Flow Cell Temp 60° ===================
17-03-18 01:52:46.905 -07 000000610 INF: =================== Cycle #93, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 01:52:46.905 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 01:52:46.905 -07 000000629 INF: FPGA: Recv TEC2TEMP 
17-03-18 01:52:46.915 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:52:46.915 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 01:52:46.915 -07 000000444 INF: FPGA: Recv TEC2EN 
17-03-18 01:52:46.925 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:52:46.925 -07 000000610 INF: =================== Cycle #93, Flow Cell Temp 60° ===================
17-03-18 01:52:46.925 -07 000000610 INF: =================== Cycle #93 ===================
17-03-18 01:52:46.925 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:52:46.925 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:52:46.955 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 01:52:46.955 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 01:52:46.955 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 01:52:47.254 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:52:47.274 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 01:52:47.274 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 01:52:47.324 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:52:47.344 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:52:47.344 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:52:47.444 -07 000000610 INF: =================== Cycle #93, Pumping Reagent PR2 (3) ===================
17-03-18 01:52:47.444 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 01:52:47.444 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:52:47.474 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 01:52:47.474 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 01:52:47.474 -07 000000610 INF: =================== Cycle #93, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:52:47.604 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 01:52:47.644 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:52:50.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:52:50.808 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:52:50.808 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.001704,
17-03-18 01:52:51.227 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:52:51.257 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:52:51.676 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:52:51.706 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:52:51.706 -07 000000610 INF: LanePump: Waited 4069 ms for pump motion to complete
17-03-18 01:52:51.706 -07 000000610 INF: =================== Cycle #93, Pumping Reagent PR2 (3) ===================
17-03-18 01:52:51.836 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:52:51.846 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 01:52:51.846 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1423, R2=1479, Total=2902. Warn if over 250 bubbles per interval.
17-03-18 01:52:51.866 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:52:51.866 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:52:51.996 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:52:52.026 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:52:52.026 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:52:52.026 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:52:52.155 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:52:52.185 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:52:52.614 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:52:52.644 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:52:52.644 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:52:52.644 -07 000000610 INF: =================== Cycle #93 ===================
17-03-18 01:52:53.862 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:52:53.862 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 01:52:53.862 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:52:53.882 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:52:53.882 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 01:52:53.882 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 01:52:54.022 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:52:54.042 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 01:52:54.042 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 01:52:54.092 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:52:54.112 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 01:52:54.112 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:52:54.211 -07 000000610 INF: =================== Cycle #93, Pumping Reagent CMS (4) ===================
17-03-18 01:52:54.211 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 01:52:54.211 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:52:54.241 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:52:54.241 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:52:54.241 -07 000000610 INF: =================== Cycle #93, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 01:52:54.371 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 01:52:54.411 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:52:55.848 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:52:55.878 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:52:56.168 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.024884,
17-03-18 01:52:56.298 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:52:56.327 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:52:56.327 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 01:52:56.327 -07 000000610 INF: =================== Cycle #93, Pumping Reagent CMS (4) ===================
17-03-18 01:52:56.457 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:52:56.487 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:52:56.487 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:52:56.617 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:52:56.647 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:52:56.647 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:52:56.647 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:52:56.777 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:52:56.807 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:52:56.837 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:52:56.837 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1423, R2=1479, Total=2902. Warn if over 250 bubbles per interval.
17-03-18 01:52:57.236 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:52:57.266 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:52:57.266 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:52:57.266 -07 000000610 INF: =================== Cycle #93 ===================
17-03-18 01:52:58.483 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:52:58.483 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:52:58.483 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:52:58.503 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 01:52:58.503 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 01:52:58.503 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 01:52:58.653 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:52:58.673 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 01:52:58.673 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 01:52:58.723 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:52:58.743 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:52:58.743 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:52:58.843 -07 000000610 INF: =================== Cycle #93, Pumping Reagent PR2 (3) ===================
17-03-18 01:52:58.843 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 01:52:58.843 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:52:58.873 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:52:58.873 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:52:58.873 -07 000000610 INF: =================== Cycle #93, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:52:59.002 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 01:52:59.042 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:52:59.911 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:52:59.941 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:52:59.941 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 01:52:59.941 -07 000000610 INF: =================== Cycle #93, Pumping Reagent PR2 (3) ===================
17-03-18 01:53:00.070 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:53:00.100 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:53:00.100 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:53:00.230 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:53:00.260 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:53:00.260 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:53:00.260 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:53:00.390 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:53:00.420 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:53:00.849 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:53:00.879 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:53:00.879 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:53:00.879 -07 000000610 INF: =================== Cycle #93 ===================
17-03-18 01:53:00.879 -07 000000626 INF: WaitCommand(10000) start
17-03-18 01:53:00.879 -07 000000606 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:53:00.879 -07 000000606 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 01:53:01.528 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.009895,
17-03-18 01:53:01.827 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 3
17-03-18 01:53:01.827 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=3, R2=2, Total=5. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1426, R2=1481, Total=2907. Warn if over 250 bubbles per interval.
17-03-18 01:53:02.097 -07 000000606 INF: AsyncDelayTimer waited 1216ms
17-03-18 01:53:02.097 -07 000000606 INF: LanePump: Xmit /1?\r
17-03-18 01:53:02.127 -07 000000606 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:53:02.127 -07 000000606 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:53:02.256 -07 000000606 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 01:53:02.296 -07 000000606 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:53:03.823 -07 000000606 INF: LanePump: Xmit /1Q\r
17-03-18 01:53:03.853 -07 000000606 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:53:04.273 -07 000000606 INF: LanePump: Xmit /1Q\r
17-03-18 01:53:04.303 -07 000000606 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:53:04.303 -07 000000606 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 01:53:04.303 -07 000000606 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:53:04.303 -07 000000606 INF: ===================  ===================
17-03-18 01:53:06.818 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:53:06.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1426, R2=1481, Total=2907. Warn if over 250 bubbles per interval.
17-03-18 01:53:06.888 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.004458,
17-03-18 01:53:10.870 -07 000000626 INF: WaitCommand(10000) end
17-03-18 01:53:10.870 -07 000000610 INF: =================== Cycle #93, Pumping Reagent PR2 (3) ===================
17-03-18 01:53:10.870 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 01:53:10.870 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:53:10.910 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 01:53:10.910 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 01:53:10.910 -07 000000610 INF: =================== Cycle #93, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:53:11.040 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 01:53:11.080 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:53:11.808 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 01:53:11.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1426, R2=1482, Total=2908. Warn if over 250 bubbles per interval.
17-03-18 01:53:12.248 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.003063,
17-03-18 01:53:16.799 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:53:16.799 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1426, R2=1482, Total=2908. Warn if over 250 bubbles per interval.
17-03-18 01:53:17.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:53:17.238 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:53:17.618 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.003063,
17-03-18 01:53:17.658 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:53:17.687 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:53:18.107 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:53:18.137 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:53:18.556 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:53:18.586 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:53:19.005 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:53:19.035 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:53:19.035 -07 000000610 INF: LanePump: Waited 7969 ms for pump motion to complete
17-03-18 01:53:19.035 -07 000000610 INF: =================== Cycle #93, Pumping Reagent PR2 (3) ===================
17-03-18 01:53:19.165 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:53:19.195 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 01:53:19.195 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 01:53:19.324 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:53:19.354 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 01:53:19.354 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 01:53:19.354 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:53:19.484 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:53:19.514 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:53:19.943 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:53:19.973 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:53:19.973 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:53:19.973 -07 000000610 INF: =================== Cycle #93 ===================
17-03-18 01:53:21.191 -07 000000610 INF: AsyncDelayTimer waited 1216ms
17-03-18 01:53:21.191 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 01:53:21.191 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:53:21.211 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:53:21.211 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 01:53:21.211 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 01:53:21.420 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:53:21.440 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 01:53:21.440 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 01:53:21.490 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:53:21.510 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 01:53:21.510 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:53:21.610 -07 000000610 INF: =================== Cycle #93, Pumping Reagent IMT (1) ===================
17-03-18 01:53:21.610 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 01:53:21.610 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:53:21.640 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 01:53:21.640 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 01:53:21.640 -07 000000610 INF: =================== Cycle #93, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 01:53:21.770 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 01:53:21.790 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 01:53:21.790 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:53:21.810 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:53:22.968 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 3.993549,
17-03-18 01:53:23.247 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:53:23.277 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:53:23.696 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:53:23.726 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:53:23.726 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 01:53:23.726 -07 000000610 INF: =================== Cycle #93, Pumping Reagent IMT (1) ===================
17-03-18 01:53:23.856 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:53:23.886 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 01:53:23.886 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 01:53:24.016 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:53:24.046 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 01:53:24.046 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 01:53:24.046 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:53:24.175 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:53:24.205 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:53:24.634 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:53:24.664 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:53:24.664 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:53:24.664 -07 000000610 INF: =================== Cycle #93 ===================
17-03-18 01:53:25.882 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 01:53:25.882 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:53:25.882 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:53:25.902 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 01:53:25.902 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 01:53:25.902 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 01:53:26.132 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:53:26.152 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 01:53:26.152 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 01:53:26.202 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:53:26.221 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:53:26.221 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:53:26.321 -07 000000610 INF: =================== Cycle #93, Pumping Reagent PR2 (3) ===================
17-03-18 01:53:26.321 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 01:53:26.321 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:53:26.351 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 01:53:26.351 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 01:53:26.351 -07 000000610 INF: =================== Cycle #93, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:53:26.481 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 01:53:26.521 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:53:26.780 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:53:26.780 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:53:27.389 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:53:27.419 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:53:27.419 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 01:53:27.419 -07 000000610 INF: =================== Cycle #93, Pumping Reagent PR2 (3) ===================
17-03-18 01:53:27.549 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:53:27.579 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 01:53:27.579 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 01:53:27.709 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:53:27.739 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 01:53:27.739 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 01:53:27.739 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:53:27.868 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:53:27.898 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:53:28.328 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:53:28.328 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.001704,
17-03-18 01:53:28.357 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:53:28.357 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:53:28.357 -07 000000610 INF: =================== Cycle #93 ===================
17-03-18 01:53:28.357 -07 000000610 INF: =================== Cycle #93, Flow Cell Temp 65° ===================
17-03-18 01:53:28.357 -07 000000610 INF: =================== Cycle #93, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 01:53:28.367 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 01:53:28.367 -07 000000606 INF: FPGA: Recv TEC2TEMP 
17-03-18 01:53:28.377 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:53:28.377 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 01:53:28.377 -07 000000606 INF: FPGA: Recv TEC2EN 
17-03-18 01:53:28.387 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:53:28.387 -07 000000610 INF: =================== Cycle #93, Flow Cell Temp 65° ===================
17-03-18 01:53:28.387 -07 000000610 INF: =================== Cycle #93 ===================
17-03-18 01:53:28.387 -07 000000610 INF: WaitCommand(30000) start
17-03-18 01:53:31.771 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:53:31.771 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:53:33.697 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.000345,
17-03-18 01:53:36.762 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:53:36.762 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:53:39.047 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.000345,
17-03-18 01:53:41.752 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:53:41.752 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:53:44.407 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.0344,
17-03-18 01:53:46.743 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:53:46.743 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:53:50.498 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.037119,
17-03-18 01:53:51.737 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:53:51.737 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:53:55.854 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.026244,
17-03-18 01:53:56.734 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:53:56.734 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:53:58.352 -07 000000610 INF: WaitCommand(30000) end
17-03-18 01:53:58.352 -07 000000610 INF: =================== Cycle #93, Pumping Reagent PR2 (3) ===================
17-03-18 01:53:58.352 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 01:53:58.352 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:53:58.382 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 01:53:58.382 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 01:53:58.382 -07 000000610 INF: =================== Cycle #93, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:53:58.512 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 01:53:58.552 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:53:59.092 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:53:59.122 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:53:59.122 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 01:53:59.122 -07 000000610 INF: =================== Cycle #93, Pumping Reagent PR2 (3) ===================
17-03-18 01:53:59.252 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:53:59.282 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 01:53:59.282 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 01:53:59.412 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:53:59.442 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 01:53:59.442 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 01:53:59.442 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:53:59.572 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:53:59.602 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:54:00.031 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:54:00.061 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:54:00.061 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:54:00.061 -07 000000610 INF: =================== Cycle #93 ===================
17-03-18 01:54:00.061 -07 000000455 INF: WaitCommand(30000) start
17-03-18 01:54:00.061 -07 000000438 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:54:00.061 -07 000000438 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 01:54:01.211 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.016692,
17-03-18 01:54:01.281 -07 000000438 INF: AsyncDelayTimer waited 1216ms
17-03-18 01:54:01.281 -07 000000438 INF: LanePump: Xmit /1?\r
17-03-18 01:54:01.311 -07 000000438 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 01:54:01.311 -07 000000438 INF: LanePump: Current Position of Pump is: 1920
17-03-18 01:54:01.440 -07 000000438 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 01:54:01.480 -07 000000438 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:54:01.730 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:54:01.730 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:54:03.819 -07 000000438 INF: LanePump: Xmit /1Q\r
17-03-18 01:54:03.849 -07 000000438 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:54:04.269 -07 000000438 INF: LanePump: Xmit /1Q\r
17-03-18 01:54:04.299 -07 000000438 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:54:04.299 -07 000000438 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 01:54:04.299 -07 000000438 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:54:04.299 -07 000000438 INF: ===================  ===================
17-03-18 01:54:06.567 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 3.98264,
17-03-18 01:54:06.727 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:54:06.727 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:54:11.724 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:54:11.724 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:54:11.923 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.003063,
17-03-18 01:54:16.720 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:54:16.720 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:54:17.280 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.045313,
17-03-18 01:54:21.717 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:54:21.717 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:54:22.636 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.02213,
17-03-18 01:54:26.713 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:54:26.713 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:54:27.993 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.004458,
17-03-18 01:54:30.051 -07 000000455 INF: WaitCommand(30000) end
17-03-18 01:54:30.051 -07 000000610 INF: =================== Cycle #93, Flow Cell Temp 22° ===================
17-03-18 01:54:30.051 -07 000000610 INF: =================== Cycle #93, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 01:54:30.051 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 01:54:30.061 -07 000000606 INF: FPGA: Recv TEC2TEMP 
17-03-18 01:54:30.061 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:54:30.061 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 01:54:30.061 -07 000000611 INF: FPGA: Recv TEC2EN 
17-03-18 01:54:30.071 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:54:30.071 -07 000000610 INF: =================== Cycle #93, Flow Cell Temp 22° ===================
17-03-18 01:54:30.071 -07 000000610 INF: =================== Cycle #93 ===================
17-03-18 01:54:30.071 -07 000000610 INF: =================== Cycle #93, Pumping Reagent PR2 (3) ===================
17-03-18 01:54:30.071 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 01:54:30.071 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:54:30.111 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 01:54:30.111 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 01:54:30.111 -07 000000610 INF: =================== Cycle #93, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:54:30.241 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 01:54:30.281 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:54:31.710 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:54:31.710 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:54:33.349 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 3.971733,
17-03-18 01:54:33.409 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:54:33.439 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:54:33.859 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:54:33.889 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:54:34.308 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:54:34.338 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:54:34.338 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 01:54:34.338 -07 000000610 INF: =================== Cycle #93, Pumping Reagent PR2 (3) ===================
17-03-18 01:54:34.468 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:54:34.498 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:54:34.498 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:54:34.628 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:54:34.658 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:54:34.658 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:54:34.658 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:54:34.788 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:54:34.818 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:54:35.248 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:54:35.278 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:54:35.278 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:54:35.278 -07 000000610 INF: =================== Cycle #93 ===================
17-03-18 01:54:36.497 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:54:36.497 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 01:54:36.497 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:54:36.517 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:54:36.517 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 01:54:36.517 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 01:54:36.667 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:54:36.687 -07 000000610 INF: ReagentValve: Recv 00E2\r
17-03-18 01:54:36.687 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 226 steps, expected 204. Error = 22 steps (10.8%)
17-03-18 01:54:36.707 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:54:36.707 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:54:36.737 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:54:36.757 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 01:54:36.757 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:54:36.857 -07 000000610 INF: =================== Cycle #93, Pumping Reagent USM (2) ===================
17-03-18 01:54:36.857 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 01:54:36.857 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:54:36.887 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:54:36.887 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:54:36.887 -07 000000610 INF: =================== Cycle #93, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 01:54:37.017 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 01:54:37.057 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:54:38.496 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:54:38.526 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:54:38.705 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 3.979922,
17-03-18 01:54:38.945 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:54:38.975 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:54:38.975 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 01:54:38.975 -07 000000610 INF: =================== Cycle #93, Pumping Reagent USM (2) ===================
17-03-18 01:54:39.105 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:54:39.135 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:54:39.135 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:54:39.265 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:54:39.295 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:54:39.295 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:54:39.295 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:54:39.425 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:54:39.455 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:54:39.885 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:54:39.915 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:54:39.915 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:54:39.915 -07 000000610 INF: =================== Cycle #93 ===================
17-03-18 01:54:41.134 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:54:41.134 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:54:41.134 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:54:41.154 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 01:54:41.154 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 01:54:41.154 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 01:54:41.304 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:54:41.324 -07 000000610 INF: ReagentValve: Recv 00E2\r
17-03-18 01:54:41.324 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 226 steps, expected 204. Error = 22 steps (10.8%)
17-03-18 01:54:41.374 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:54:41.394 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:54:41.394 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:54:41.494 -07 000000610 INF: =================== Cycle #93, Pumping Reagent PR2 (3) ===================
17-03-18 01:54:41.494 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 01:54:41.494 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:54:41.524 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:54:41.524 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:54:41.524 -07 000000610 INF: =================== Cycle #93, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:54:41.653 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 01:54:41.693 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:54:41.703 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:54:41.703 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:54:42.563 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:54:42.593 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:54:42.593 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 01:54:42.593 -07 000000610 INF: =================== Cycle #93, Pumping Reagent PR2 (3) ===================
17-03-18 01:54:42.723 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:54:42.753 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:54:42.753 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:54:42.883 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:54:42.913 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:54:42.913 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:54:42.913 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:54:43.043 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:54:43.073 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:54:43.502 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:54:43.532 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:54:43.532 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:54:43.532 -07 000000610 INF: =================== Cycle #93 ===================
17-03-18 01:54:43.532 -07 000000592 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:54:43.532 -07 000000606 INF: WaitCommand(10000) start
17-03-18 01:54:43.532 -07 000000592 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 01:54:44.062 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 3.988112,
17-03-18 01:54:44.751 -07 000000592 INF: AsyncDelayTimer waited 1215ms
17-03-18 01:54:44.751 -07 000000592 INF: LanePump: Xmit /1?\r
17-03-18 01:54:44.781 -07 000000592 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:54:44.781 -07 000000592 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:54:44.911 -07 000000592 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 01:54:44.951 -07 000000592 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:54:46.480 -07 000000592 INF: LanePump: Xmit /1Q\r
17-03-18 01:54:46.510 -07 000000592 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:54:46.700 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:54:46.700 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:54:46.930 -07 000000592 INF: LanePump: Xmit /1Q\r
17-03-18 01:54:46.960 -07 000000592 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:54:46.960 -07 000000592 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 01:54:46.960 -07 000000592 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:54:46.960 -07 000000592 INF: ===================  ===================
17-03-18 01:54:49.958 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.012614,
17-03-18 01:54:51.697 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:54:51.697 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:54:53.535 -07 000000606 INF: WaitCommand(10000) end
17-03-18 01:54:53.535 -07 000000610 INF: =================== Cycle #93, Imaging ===================
17-03-18 01:54:53.535 -07 000000610 INF: Imaging Cycle 93: ScanTilesCommand Cycle 93 time start.
17-03-18 01:54:53.535 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 01:54:53.535 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:54:53.565 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:54:53.565 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 01:54:53.565 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 01:54:53.865 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:54:53.885 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 01:54:53.885 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 01:54:53.935 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:54:53.955 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 01:54:53.955 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:54:53.955 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:54:53.955 -07 000000611 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 01:54:53.955 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:54:53.955 -07 000000611 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 01:54:53.955 -07 000000626 INF: FPGA: Recv EXLED1ON 
17-03-18 01:54:53.965 -07 000000611 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:54:53.965 -07 000000611 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 01:54:53.965 -07 000000606 INF: FPGA: Recv EXLED1ADCR 23218
17-03-18 01:54:53.975 -07 000000611 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:54:53.975 -07 000000611 INF: RedLED: Using Red data: Photodiode ADC 23218 --> 7.5 mW (old method), or 205.8 mW (new method). Difference = 198.3 mW
17-03-18 01:54:53.975 -07 000000611 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 01:54:53.975 -07 000000438 INF: FPGA: Recv EXLED1OFF 
17-03-18 01:54:53.985 -07 000000611 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:54:53.985 -07 000000611 INF: RedLED: LED was on for 20 ms
17-03-18 01:54:53.985 -07 000000611 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-18 01:54:53.985 -07 000000611 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 01:54:53.985 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:54:53.985 -07 000000611 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 01:54:53.985 -07 000000455 INF: FPGA: Recv EXLED2ON 
17-03-18 01:54:53.995 -07 000000611 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:54:53.995 -07 000000611 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 01:54:53.995 -07 000000455 INF: FPGA: Recv EXLED1ADCR 2101
17-03-18 01:54:54.005 -07 000000611 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:54:54.005 -07 000000611 INF: GreenLED: Using Green data: Photodiode ADC 2101 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.6 mW
17-03-18 01:54:54.005 -07 000000611 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 01:54:54.005 -07 000000592 INF: FPGA: Recv EXLED2OFF 
17-03-18 01:54:54.015 -07 000000611 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:54:54.015 -07 000000611 INF: GreenLED: LED was on for 19 ms
17-03-18 01:54:54.015 -07 000000611 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 01:54:54.015 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 01:54:54.015 -07 000000592 INF: FPGA: Recv EMCUR 
17-03-18 01:54:54.025 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:54:54.025 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 01:54:54.525 -07 000000592 INF: FPGA: Recv EMOUT
17-03-18 01:54:54.525 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 01:54:54.525 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 01:54:54.525 -07 000000611 INF: FPGA: Recv EMCUR 
17-03-18 01:54:54.535 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:54:54.535 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:54:54.535 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.126933866305007. ------
17-03-18 01:54:54.535 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:54:54.535 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17900 mm
17-03-18 01:54:54.535 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:54:54.535 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:54:54.545 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:54:54.545 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:54:54.545 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 39102, sync = True, waitForSettling = False)
17-03-18 01:54:54.545 -07 000000438 INF: Z Motor: Moving to -0.178997 mm, started at -0.126934 mm, distance = -52.06 um
17-03-18 01:54:54.545 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 01:54:54.545 -07 000000606 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-18 01:54:54.555 -07 000000438 INF: FPGA: Xmit ZDACW 39102\n [Z Motor]
17-03-18 01:54:54.555 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:54:54.565 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:54:54.565 -07 000000438 INF: FPGA: 'ZDACW 39102' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 01:54:54.565 -07 000000461 INF: FPGA: Recv YRDPOS 154381
17-03-18 01:54:54.575 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:54:54.575 -07 000000606 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:54:54.575 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:54:54.575 -07 000000592 INF: FPGA: Recv ZDACR 39102
17-03-18 01:54:54.575 -07 000000606 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 01:54:54.575 -07 000000606 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 01:54:54.585 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:54:54.585 -07 000000438 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 01:54:54.585 -07 000000606 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 01:54:54.745 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:54:54.745 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 204 ms overall
17-03-18 01:54:55.314 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.007176,
17-03-18 01:54:56.264 -07 000000592 INF: FPGA: Recv YMVTO 122703 24777
17-03-18 01:54:56.264 -07 000000606 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1693 ms overall
17-03-18 01:54:56.264 -07 000000606 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 01:54:56.264 -07 000000606 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24750 steps, but required 24777 steps (15.486 mm). Slippage = 0.017 mm (0.00%).
17-03-18 01:54:56.264 -07 000000606 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1693 ms, distance = 15.468 mm, average velocity = 9.137 mm/sec
17-03-18 01:54:56.693 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:54:56.693 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:54:59.112 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:54:59.112 -07 000000461 INF: FPGA: Recv YRDPOS 122696
17-03-18 01:54:59.122 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:54:59.122 -07 000000606 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:54:59.142 -07 000000606 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:54:59.142 -07 000000606 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 01:54:59.142 -07 000000606 INF: Y Motor: Moved to 59.9102 after 4604 ms
17-03-18 01:54:59.152 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178997 mm (DAC = 39102)
17-03-18 01:54:59.152 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:54:59.681 -07 000000438 INF: FPGA: Recv ZSGSRD 37149
17-03-18 01:54:59.681 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 520 ms to get response, and 528 ms overall
17-03-18 01:54:59.681 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:54:59.681 -07 000000592 INF: FPGA: Recv ZSGSRD 37160
17-03-18 01:54:59.691 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:54:59.691 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:54:59.691 -07 000000462 INF: FPGA: Recv ZSGSRD 37157
17-03-18 01:54:59.701 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:54:59.701 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:54:59.701 -07 000000462 INF: FPGA: Recv ZSGSRD 37156
17-03-18 01:54:59.711 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:54:59.711 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:54:59.711 -07 000000462 INF: FPGA: Recv ZSGSRD 37152
17-03-18 01:54:59.721 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:54:59.721 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:54:59.721 -07 000000462 INF: FPGA: Recv ZSGSRD 37153
17-03-18 01:54:59.731 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:54:59.731 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:54:59.731 -07 000000462 INF: FPGA: Recv ZSGSRD 37156
17-03-18 01:54:59.741 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:54:59.741 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:54:59.741 -07 000000438 INF: FPGA: Recv ZSGSRD 37154
17-03-18 01:54:59.751 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:54:59.751 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:54:59.751 -07 000000438 INF: FPGA: Recv ZSGSRD 37154
17-03-18 01:54:59.761 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:54:59.761 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:54:59.761 -07 000000438 INF: FPGA: Recv ZSGSRD 37155
17-03-18 01:54:59.771 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:54:59.771 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:54:59.771 -07 000000438 INF: FPGA: Recv ZPIEZORD 33436
17-03-18 01:54:59.781 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:54:59.781 -07 000000629 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.967 V. Piezo Error = -8.2 V.
17-03-18 01:54:59.781 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.0 um, Read 10 ADC samples: Avg = 37155 (-178.1 uncal um), Error = 0.9 uncal um, Median = 37154 (-178.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37149 (-178.1 uncal um), Max = 37160 (-178.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:54:59.781 -07 000000629 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37155, posNoise = 5, negNoise = 6
17-03-18 01:54:59.781 -07 000000629 INF: Z Motor: After move to -0.178997, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:54:59.781 -07 000000629 INF: Z Motor: Settle wait time = 4609 ms, measure time = 629 ms (allowed 150 ms), total time = 5238 ms
17-03-18 01:54:59.781 -07 000000629 INF: Z Motor: Warning: Actual position measuring time = 629 ms, longer than max expected time of 150 ms
17-03-18 01:54:59.781 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 5243 ms
17-03-18 01:54:59.781 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:54:59.781 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:54:59.781 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:54:59.781 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:54:59.781 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:54:59.781 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:54:59.781 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:54:59.781 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:54:59.781 -07 000000438 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 01:54:59.811 -07 000000438 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 24 ms.
17-03-18 01:54:59.811 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:54:59.811 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 01:54:59.811 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:54:59.831 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:54:59.831 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 01:54:59.831 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:54:59.871 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:55:00.171 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:55:00.171 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:55:00.171 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:55:00.181 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591925008, 0x0, 559484976) start.
17-03-18 01:55:00.211 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:55:00.211 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 01:55:00.211 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 01:55:00.301 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591925008, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:55:00.301 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:00.301 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:55:00.311 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 01:55:00.411 -07 000000629 INF: Image SNR check: start
17-03-18 01:55:00.411 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:55:00.411 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:55:00.421 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:55:00.421 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:55:00.421 -07 000000629 INF: Image SNR check: pass  [peak (Max-Min)=144.72]
17-03-18 01:55:00.421 -07 000000629 INF: Autofocus start
17-03-18 01:55:00.421 -07 000000629 INF: MeasureProfile start
17-03-18 01:55:00.431 -07 000000629 INF: MeasureProfile done
17-03-18 01:55:00.431 -07 000000629 INF: X=32  Z correction [um]=0.09220707
17-03-18 01:55:00.441 -07 000000629 INF: Autofocus finished
17-03-18 01:55:00.621 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:55:00.621 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:55:00.621 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.179014954138263. ----------
17-03-18 01:55:00.621 -07 000000610 INF: Cycle	93	Tile	1	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:55:00.631 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37635, sync = True, waitForSettling = True)
17-03-18 01:55:00.631 -07 000000610 INF: Z Motor: Moving to -0.172282 mm, started at -0.179015 mm, distance = 6.73 um
17-03-18 01:55:00.631 -07 000000610 INF: FPGA: Xmit ZDACW 37635\n [Z Motor]
17-03-18 01:55:00.631 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 01:55:00.641 -07 000000610 INF: FPGA: 'ZDACW 37635' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:00.641 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:55:00.641 -07 000000592 INF: FPGA: Recv ZDACR 37635
17-03-18 01:55:00.651 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:00.651 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:55:00.671 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 3.997626,
17-03-18 01:55:00.801 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:00.801 -07 000000462 INF: FPGA: Recv ZSGSRD 36107
17-03-18 01:55:00.811 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:55:00.811 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:00.811 -07 000000438 INF: FPGA: Recv ZSGSRD 36112
17-03-18 01:55:00.821 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:00.821 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:00.821 -07 000000438 INF: FPGA: Recv ZSGSRD 36109
17-03-18 01:55:00.831 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:00.831 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:00.831 -07 000000438 INF: FPGA: Recv ZSGSRD 36111
17-03-18 01:55:00.841 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:55:00.841 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:00.841 -07 000000438 INF: FPGA: Recv ZSGSRD 36108
17-03-18 01:55:00.851 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:00.851 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:00.851 -07 000000438 INF: FPGA: Recv ZSGSRD 36107
17-03-18 01:55:00.861 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:00.861 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:00.861 -07 000000592 INF: FPGA: Recv ZSGSRD 36110
17-03-18 01:55:00.871 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:00.871 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:00.871 -07 000000438 INF: FPGA: Recv ZSGSRD 36108
17-03-18 01:55:00.881 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:00.881 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:00.881 -07 000000462 INF: FPGA: Recv ZSGSRD 36105
17-03-18 01:55:00.891 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:00.891 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:00.891 -07 000000462 INF: FPGA: Recv ZSGSRD 36108
17-03-18 01:55:00.901 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:00.901 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:55:00.901 -07 000000462 INF: FPGA: Recv ZPIEZORD 32069
17-03-18 01:55:00.911 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:00.911 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.743 V. Piezo Error = -8.9 V.
17-03-18 01:55:00.911 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36108 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36108 (-171.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36105 (-171.4 uncal um), Max = 36112 (-171.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:55:00.911 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36108, posNoise = 4, negNoise = 3
17-03-18 01:55:00.911 -07 000000610 INF: Z Motor: After move to -0.172282, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:55:00.911 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:55:00.911 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:55:00.911 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:55:00.911 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:55:00.911 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:55:00.911 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:55:00.911 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:55:00.911 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:55:00.911 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:55:00.911 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:55:00.911 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 01:55:00.911 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:55:00.911 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:55:00.911 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:55:00.911 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:55:00.931 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 01:55:00.931 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 01:55:00.931 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 01:55:00.931 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:55:00.941 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:55:00.941 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:55:00.951 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 01:55:00.951 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 38 ms.
17-03-18 01:55:00.951 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37811 150\n [Camera]
17-03-18 01:55:01.150 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:55:01.550 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 01:55:01.550 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 01:55:01.550 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:55:01.550 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:55:01.550 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 648609776, 0x0, 391868352) start.
17-03-18 01:55:01.550 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 01:55:01.550 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 01:55:01.550 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:55:01.660 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:55:01.660 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:55:01.690 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:55:01.690 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:55:01.740 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37811 777
17-03-18 01:55:01.880 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:55:01.930 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 648609776, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 01:55:01.930 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 01:55:01.930 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:01.940 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:55:01.940 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 01:55:02.040 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 01:55:02.040 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 01:55:02.040 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:02.040 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:55:02.050 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 501 ms.
17-03-18 01:55:02.070 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:55:02.070 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:55:02.070 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:55:02.080 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:55:02.080 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:55:02.080 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:55:02.080 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:55:02.080 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 591925008, 0x0, 391868352) start.
17-03-18 01:55:02.090 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:55:02.090 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:55:02.260 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 01:55:02.270 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:55:02.270 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37811 150' command took 2 ms to send, 1310 ms to get response, and 1314 ms overall
17-03-18 01:55:02.270 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:55:02.270 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.17228880402584. ------
17-03-18 01:55:02.270 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:55:02.270 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17831 mm
17-03-18 01:55:02.270 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:55:02.270 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:55:02.280 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:55:02.280 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:55:02.280 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 01:55:02.280 -07 000000502 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 01:55:02.280 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 38952, sync = True, waitForSettling = False)
17-03-18 01:55:02.280 -07 000000585 INF: Z Motor: Moving to -0.178311 mm, started at -0.172289 mm, distance = -6.02 um
17-03-18 01:55:02.290 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:02.290 -07 000000569 INF: FPGA: Recv YRDPOS 122696
17-03-18 01:55:02.300 -07 000000585 INF: FPGA: Xmit ZDACW 38952\n [Z Motor]
17-03-18 01:55:02.300 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 01:55:02.300 -07 000000502 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:02.300 -07 000000502 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:55:02.300 -07 000000502 INF: Y Motor: Moving 1332 steps2
17-03-18 01:55:02.300 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 01:55:02.310 -07 000000585 INF: FPGA: 'ZDACW 38952' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:55:02.310 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:55:02.310 -07 000000611 INF: FPGA: Recv ZDACR 38952
17-03-18 01:55:02.320 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:02.320 -07 000000585 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 01:55:02.320 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:55:02.480 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:55:02.480 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:55:02.480 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 591925008, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:55:02.480 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:55:02.480 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:02.480 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:55:02.480 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:55:02.480 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:02.489 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:02.489 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 01:55:02.489 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:55:02.489 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 01:55:02.689 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 01:55:02.689 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:55:02.729 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:02.729 -07 000000438 INF: FPGA: Recv YRDPOS 124380
17-03-18 01:55:02.739 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:55:02.739 -07 000000502 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:02.739 -07 000000502 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 01:55:02.739 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.097 mm/sec
17-03-18 01:55:03.689 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:03.689 -07 000000462 INF: FPGA: Recv YRDPOS 124380
17-03-18 01:55:03.699 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:55:03.699 -07 000000502 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:03.719 -07 000000502 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:55:03.719 -07 000000502 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:55:03.719 -07 000000502 INF: Y Motor: Moved to 60.7324 after 1446 ms (table move)
17-03-18 01:55:03.729 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178311 mm (DAC = 38952)
17-03-18 01:55:03.729 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:03.729 -07 000000462 INF: FPGA: Recv ZSGSRD 37057
17-03-18 01:55:03.739 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:55:03.739 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:03.739 -07 000000462 INF: FPGA: Recv ZSGSRD 37045
17-03-18 01:55:03.749 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:03.749 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:03.749 -07 000000462 INF: FPGA: Recv ZSGSRD 37046
17-03-18 01:55:03.759 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:03.759 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:03.759 -07 000000462 INF: FPGA: Recv ZSGSRD 37052
17-03-18 01:55:03.769 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:03.769 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:03.769 -07 000000462 INF: FPGA: Recv ZSGSRD 37050
17-03-18 01:55:03.779 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:03.779 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:03.779 -07 000000462 INF: FPGA: Recv ZSGSRD 37040
17-03-18 01:55:03.789 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:03.789 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:03.789 -07 000000462 INF: FPGA: Recv ZSGSRD 37046
17-03-18 01:55:03.799 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:03.799 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:03.799 -07 000000462 INF: FPGA: Recv ZSGSRD 37047
17-03-18 01:55:03.809 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:03.809 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:03.809 -07 000000462 INF: FPGA: Recv ZSGSRD 37050
17-03-18 01:55:03.819 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:03.819 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:03.819 -07 000000462 INF: FPGA: Recv ZSGSRD 37053
17-03-18 01:55:03.829 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:03.829 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:55:03.829 -07 000000462 INF: FPGA: Recv ZPIEZORD 33329
17-03-18 01:55:03.839 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:03.839 -07 000000592 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.944 V. Piezo Error = -8.2 V.
17-03-18 01:55:03.839 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.3 um, Read 10 ADC samples: Avg = 37049 (-177.4 uncal um), Error = 0.9 uncal um, Median = 37048 (-177.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 37040 (-177.4 uncal um), Max = 37057 (-177.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:55:03.839 -07 000000592 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37049, posNoise = 8, negNoise = 9
17-03-18 01:55:03.839 -07 000000592 INF: Z Motor: After move to -0.178311, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:55:03.839 -07 000000592 INF: Z Motor: Settle wait time = 1450 ms, measure time = 107 ms (allowed 150 ms), total time = 1557 ms
17-03-18 01:55:03.839 -07 000000592 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 01:55:03.889 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 01:55:03.889 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:55:03.889 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:55:03.889 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:55:03.889 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:55:03.889 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:55:03.889 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:55:03.889 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:55:03.889 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:55:03.889 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:55:03.899 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:55:03.899 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:55:03.909 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:55:03.909 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 01:55:03.909 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:55:03.959 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:55:04.258 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:55:04.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:55:04.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:55:04.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 01:55:04.298 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:55:04.298 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 01:55:04.298 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 01:55:04.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:55:04.388 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:04.388 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:55:04.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 01:55:04.398 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:55:04.998 -07 000000455 INF: Autofocus start
17-03-18 01:55:04.998 -07 000000455 INF: MeasureProfile start
17-03-18 01:55:05.008 -07 000000455 INF: MeasureProfile done
17-03-18 01:55:05.008 -07 000000455 INF: X=0  Z correction [um]=-0.0713522
17-03-18 01:55:05.008 -07 000000455 INF: Autofocus finished
17-03-18 01:55:05.008 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:55:05.008 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 604 ms to get response, and 609 ms overall
17-03-18 01:55:05.028 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:55:05.228 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:55:05.228 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 218 ms overall
17-03-18 01:55:05.228 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.178333987651237. ----------
17-03-18 01:55:05.228 -07 000000610 INF: Cycle	93	Tile	2	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:55:05.238 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37449, sync = True, waitForSettling = True)
17-03-18 01:55:05.238 -07 000000610 INF: Z Motor: Moving to -0.171431 mm, started at -0.178334 mm, distance = 6.90 um
17-03-18 01:55:05.238 -07 000000610 INF: FPGA: Xmit ZDACW 37449\n [Z Motor]
17-03-18 01:55:05.238 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 01:55:05.248 -07 000000610 INF: FPGA: 'ZDACW 37449' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:55:05.248 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:55:05.248 -07 000000569 INF: FPGA: Recv ZDACR 37449
17-03-18 01:55:05.258 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:05.258 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:55:05.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:05.408 -07 000000455 INF: FPGA: Recv ZSGSRD 35977
17-03-18 01:55:05.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:55:05.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:05.418 -07 000000455 INF: FPGA: Recv ZSGSRD 35977
17-03-18 01:55:05.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:05.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:05.428 -07 000000569 INF: FPGA: Recv ZSGSRD 35972
17-03-18 01:55:05.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:05.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:05.438 -07 000000455 INF: FPGA: Recv ZSGSRD 35983
17-03-18 01:55:05.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:05.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:05.448 -07 000000569 INF: FPGA: Recv ZSGSRD 35973
17-03-18 01:55:05.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:05.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:05.458 -07 000000455 INF: FPGA: Recv ZSGSRD 35979
17-03-18 01:55:05.467 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:05.467 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:05.467 -07 000000585 INF: FPGA: Recv ZSGSRD 35982
17-03-18 01:55:05.477 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:05.477 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:05.477 -07 000000569 INF: FPGA: Recv ZSGSRD 35976
17-03-18 01:55:05.487 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:05.487 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:05.487 -07 000000569 INF: FPGA: Recv ZSGSRD 35978
17-03-18 01:55:05.497 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:05.497 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:05.497 -07 000000585 INF: FPGA: Recv ZSGSRD 35977
17-03-18 01:55:05.507 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:05.507 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:55:05.507 -07 000000461 INF: FPGA: Recv ZPIEZORD 31867
17-03-18 01:55:05.517 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:05.517 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.714 V. Piezo Error = -9.1 V.
17-03-18 01:55:05.517 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35977 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35977 (-170.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35972 (-170.5 uncal um), Max = 35983 (-170.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:55:05.517 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35977, posNoise = 6, negNoise = 5
17-03-18 01:55:05.517 -07 000000610 INF: Z Motor: After move to -0.171431, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:55:05.517 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:55:05.517 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:55:05.517 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:55:05.517 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:55:05.517 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:55:05.517 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:55:05.517 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:55:05.517 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:55:05.517 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:55:05.517 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:55:05.517 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:55:05.517 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:55:05.517 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:55:05.527 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:55:05.527 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:55:05.527 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:55:05.527 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:55:05.537 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:55:05.537 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:55:05.537 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:55:05.537 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:55:05.537 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37626 150\n [Camera]
17-03-18 01:55:05.747 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 01:55:06.027 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.016692,
17-03-18 01:55:06.137 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:55:06.137 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:55:06.137 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:55:06.137 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:55:06.137 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 01:55:06.137 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:55:06.137 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:55:06.137 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:55:06.137 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:55:06.137 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 01:55:06.327 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37626 777
17-03-18 01:55:06.477 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:55:06.537 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:55:06.537 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:55:06.537 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:06.537 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:55:06.537 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:55:06.537 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:06.537 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:55:06.537 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:55:06.537 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:55:06.547 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:55:06.667 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:55:06.667 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:55:06.667 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:55:06.667 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:55:06.667 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 01:55:06.667 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:55:06.667 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:55:06.667 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:55:06.777 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:55:06.777 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:55:06.787 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:55:06.787 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 01:55:06.857 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 01:55:06.857 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:55:06.857 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37626 150' command took 2 ms to send, 1304 ms to get response, and 1315 ms overall
17-03-18 01:55:06.857 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:55:06.857 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.171447232235269. ------
17-03-18 01:55:06.857 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:55:06.867 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17802 mm
17-03-18 01:55:06.867 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:55:06.867 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:55:06.867 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 01:55:06.867 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 38888, sync = True, waitForSettling = False)
17-03-18 01:55:06.867 -07 000000606 INF: Z Motor: Moving to -0.178018 mm, started at -0.171447 mm, distance = -6.57 um
17-03-18 01:55:06.867 -07 000000455 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 01:55:06.877 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:55:06.877 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:55:06.887 -07 000000606 INF: FPGA: Xmit ZDACW 38888\n [Z Motor]
17-03-18 01:55:06.887 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 01:55:06.897 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:06.897 -07 000000606 INF: FPGA: 'ZDACW 38888' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:55:06.897 -07 000000462 INF: FPGA: Recv YRDPOS 124381
17-03-18 01:55:06.907 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 36 ms overall
17-03-18 01:55:06.907 -07 000000455 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:06.907 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:55:06.907 -07 000000592 INF: FPGA: Recv ZDACR 38888
17-03-18 01:55:06.907 -07 000000455 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:55:06.907 -07 000000455 INF: Y Motor: Moving 1344 steps-21
17-03-18 01:55:06.917 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:55:06.917 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:55:06.917 -07 000000606 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 01:55:07.056 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 01:55:07.056 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:55:07.056 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:07.066 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:55:07.066 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:55:07.076 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:55:07.076 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:55:07.176 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 01:55:07.176 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:55:07.176 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:07.176 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:55:07.186 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 518 ms.
17-03-18 01:55:07.286 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 01:55:07.286 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-18 01:55:07.336 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:07.336 -07 000000438 INF: FPGA: Recv YRDPOS 126081
17-03-18 01:55:07.346 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:55:07.346 -07 000000455 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:07.346 -07 000000455 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 01:55:07.346 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.840 mm, average velocity = 2.194 mm/sec
17-03-18 01:55:08.296 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:08.296 -07 000000569 INF: FPGA: Recv YRDPOS 126081
17-03-18 01:55:08.306 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:08.306 -07 000000455 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:08.336 -07 000000455 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:55:08.336 -07 000000455 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:55:08.336 -07 000000455 INF: Y Motor: Moved to 61.5630 after 1475 ms (table move)
17-03-18 01:55:08.346 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178018 mm (DAC = 38888)
17-03-18 01:55:08.346 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:09.285 -07 000000592 INF: FPGA: Recv ZSGSRD 37002
17-03-18 01:55:09.285 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 930 ms to get response, and 937 ms overall
17-03-18 01:55:09.285 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:09.285 -07 000000569 INF: FPGA: Recv ZSGSRD 37006
17-03-18 01:55:09.295 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:09.295 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:09.295 -07 000000462 INF: FPGA: Recv ZSGSRD 37002
17-03-18 01:55:09.305 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:09.305 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:09.305 -07 000000569 INF: FPGA: Recv ZSGSRD 37003
17-03-18 01:55:09.315 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:09.315 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:09.315 -07 000000569 INF: FPGA: Recv ZSGSRD 37002
17-03-18 01:55:09.325 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:09.325 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:09.325 -07 000000592 INF: FPGA: Recv ZSGSRD 36997
17-03-18 01:55:09.335 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:09.335 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:09.335 -07 000000462 INF: FPGA: Recv ZSGSRD 37005
17-03-18 01:55:09.345 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:09.345 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:09.345 -07 000000626 INF: FPGA: Recv ZSGSRD 37005
17-03-18 01:55:09.355 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:09.355 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:09.355 -07 000000626 INF: FPGA: Recv ZSGSRD 37003
17-03-18 01:55:09.365 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:09.365 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:09.365 -07 000000569 INF: FPGA: Recv ZSGSRD 37004
17-03-18 01:55:09.375 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:09.375 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:55:09.375 -07 000000626 INF: FPGA: Recv ZPIEZORD 33278
17-03-18 01:55:09.385 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:55:09.385 -07 000000585 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.934 V. Piezo Error = -8.2 V.
17-03-18 01:55:09.385 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.0 um, Read 10 ADC samples: Avg = 37003 (-177.1 uncal um), Error = 0.9 uncal um, Median = 37003 (-177.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36997 (-177.1 uncal um), Max = 37006 (-177.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:55:09.385 -07 000000585 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37003, posNoise = 3, negNoise = 6
17-03-18 01:55:09.385 -07 000000585 INF: Z Motor: After move to -0.178018, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:55:09.385 -07 000000585 INF: Z Motor: Settle wait time = 1479 ms, measure time = 1038 ms (allowed 150 ms), total time = 2517 ms
17-03-18 01:55:09.385 -07 000000585 INF: Z Motor: Warning: Actual position measuring time = 1038 ms, longer than max expected time of 150 ms
17-03-18 01:55:09.385 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2521 ms
17-03-18 01:55:09.385 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:55:09.385 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:55:09.385 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:55:09.385 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:55:09.385 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:55:09.385 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:55:09.385 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:55:09.385 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:55:09.385 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:55:09.395 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:55:09.395 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:55:09.405 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:55:09.405 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:55:09.405 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:55:09.455 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:55:09.755 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:55:09.755 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:55:09.755 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:55:09.755 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 01:55:09.795 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:55:09.795 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 01:55:09.795 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 385 ms overall
17-03-18 01:55:09.875 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 01:55:09.875 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:09.885 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:55:09.885 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-18 01:55:09.895 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:55:09.895 -07 000000592 INF: Autofocus start
17-03-18 01:55:09.895 -07 000000592 INF: MeasureProfile start
17-03-18 01:55:09.895 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:55:09.905 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:55:09.905 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:55:09.905 -07 000000592 INF: MeasureProfile done
17-03-18 01:55:09.905 -07 000000592 INF: X=48  Z correction [um]=0.1739867
17-03-18 01:55:09.905 -07 000000592 INF: Autofocus finished
17-03-18 01:55:10.104 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:55:10.104 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:55:10.104 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.178038473892716. ----------
17-03-18 01:55:10.104 -07 000000610 INF: Cycle	93	Tile	3	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:55:10.114 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37439, sync = True, waitForSettling = True)
17-03-18 01:55:10.114 -07 000000610 INF: Z Motor: Moving to -0.171385 mm, started at -0.178038 mm, distance = 6.65 um
17-03-18 01:55:10.114 -07 000000610 INF: FPGA: Xmit ZDACW 37439\n [Z Motor]
17-03-18 01:55:10.114 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 01:55:10.124 -07 000000610 INF: FPGA: 'ZDACW 37439' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:55:10.124 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:55:10.124 -07 000000585 INF: FPGA: Recv ZDACR 37439
17-03-18 01:55:10.134 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:10.134 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:55:10.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:10.284 -07 000000569 INF: FPGA: Recv ZSGSRD 35965
17-03-18 01:55:10.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:55:10.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:10.294 -07 000000585 INF: FPGA: Recv ZSGSRD 35970
17-03-18 01:55:10.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:10.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:10.304 -07 000000585 INF: FPGA: Recv ZSGSRD 35972
17-03-18 01:55:10.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:10.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:10.314 -07 000000569 INF: FPGA: Recv ZSGSRD 35968
17-03-18 01:55:10.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:10.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:10.324 -07 000000626 INF: FPGA: Recv ZSGSRD 35967
17-03-18 01:55:10.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:10.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:10.334 -07 000000569 INF: FPGA: Recv ZSGSRD 35971
17-03-18 01:55:10.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:10.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:10.344 -07 000000585 INF: FPGA: Recv ZSGSRD 35965
17-03-18 01:55:10.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:10.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:10.354 -07 000000592 INF: FPGA: Recv ZSGSRD 35970
17-03-18 01:55:10.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:10.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:10.384 -07 000000626 INF: FPGA: Recv ZSGSRD 35975
17-03-18 01:55:10.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:55:10.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:10.394 -07 000000585 INF: FPGA: Recv ZSGSRD 35967
17-03-18 01:55:10.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:10.414 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:55:10.414 -07 000000569 INF: FPGA: Recv ZPIEZORD 31912
17-03-18 01:55:10.424 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:55:10.424 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.713 V. Piezo Error = -9.0 V.
17-03-18 01:55:10.424 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35969 (-170.5 uncal um), Error = 0.9 uncal um, Median = 35969 (-170.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35965 (-170.5 uncal um), Max = 35975 (-170.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:55:10.424 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35969, posNoise = 6, negNoise = 4
17-03-18 01:55:10.424 -07 000000610 INF: Z Motor: After move to -0.171385, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:55:10.424 -07 000000610 INF: Z Motor: MoveAbsStepped took 309 ms)
17-03-18 01:55:10.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:55:10.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:55:10.424 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:55:10.424 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:55:10.424 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:55:10.424 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:55:10.424 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:55:10.424 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:55:10.424 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:55:10.424 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:55:10.424 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:55:10.424 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:55:10.434 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:55:10.434 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:55:10.434 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:55:10.434 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:55:10.444 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 01:55:10.444 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:55:10.444 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:55:10.444 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:55:10.444 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37616 150\n [Camera]
17-03-18 01:55:10.644 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:55:11.044 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 01:55:11.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 01:55:11.044 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:55:11.044 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 01:55:11.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 01:55:11.044 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:55:11.044 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:55:11.044 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 01:55:11.054 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:55:11.054 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:55:11.234 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37616 777
17-03-18 01:55:11.384 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.008536,
17-03-18 01:55:11.384 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:55:11.443 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 01:55:11.443 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:55:11.443 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:11.443 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:55:11.443 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:55:11.443 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 01:55:11.443 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:55:11.443 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:11.453 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:55:11.453 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:55:11.573 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:55:11.573 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:55:11.573 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:55:11.573 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:55:11.573 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:55:11.573 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:55:11.693 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:55:11.693 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 01:55:11.693 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:55:11.693 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:55:11.693 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:55:11.693 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 01:55:11.763 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:55:11.763 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:55:11.763 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37616 150' command took 2 ms to send, 1304 ms to get response, and 1314 ms overall
17-03-18 01:55:11.763 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:55:11.763 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.171395838538135. ------
17-03-18 01:55:11.763 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:55:11.763 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17766 mm
17-03-18 01:55:11.763 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:55:11.773 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 01:55:11.773 -07 000000438 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 01:55:11.773 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:55:11.773 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:55:11.773 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:11.773 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 38810, sync = True, waitForSettling = False)
17-03-18 01:55:11.773 -07 000000629 INF: Z Motor: Moving to -0.177661 mm, started at -0.171396 mm, distance = -6.26 um
17-03-18 01:55:11.773 -07 000000592 INF: FPGA: Recv YRDPOS 126082
17-03-18 01:55:11.783 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:55:11.783 -07 000000438 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:11.783 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:55:11.783 -07 000000438 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:55:11.783 -07 000000438 INF: Y Motor: Moving 1343 steps-20
17-03-18 01:55:11.793 -07 000000629 INF: FPGA: Xmit ZDACW 38810\n [Z Motor]
17-03-18 01:55:11.793 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 01:55:11.803 -07 000000629 INF: FPGA: 'ZDACW 38810' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:55:11.803 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:55:11.813 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:55:11.813 -07 000000585 INF: FPGA: Recv ZDACR 38810
17-03-18 01:55:11.823 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:55:11.823 -07 000000629 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 01:55:11.983 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:55:11.983 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-18 01:55:12.083 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 01:55:12.083 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:55:12.083 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:12.093 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:55:12.093 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:55:12.093 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:12.093 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:55:12.093 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:55:12.093 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-18 01:55:12.093 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 522 ms.
17-03-18 01:55:12.173 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 01:55:12.173 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 01:55:12.223 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:12.223 -07 000000455 INF: FPGA: Recv YRDPOS 127785
17-03-18 01:55:12.233 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:55:12.233 -07 000000438 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:12.233 -07 000000438 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 01:55:12.233 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.840 mm, average velocity = 2.126 mm/sec
17-03-18 01:55:13.182 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:13.182 -07 000000569 INF: FPGA: Recv YRDPOS 127785
17-03-18 01:55:13.192 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:55:13.192 -07 000000438 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:13.212 -07 000000438 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:55:13.212 -07 000000438 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:55:13.212 -07 000000438 INF: Y Motor: Moved to 62.3950 after 1445 ms (table move)
17-03-18 01:55:13.222 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177661 mm (DAC = 38810)
17-03-18 01:55:13.222 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:13.222 -07 000000438 INF: FPGA: Recv ZSGSRD 36939
17-03-18 01:55:13.232 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:55:13.232 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:13.232 -07 000000585 INF: FPGA: Recv ZSGSRD 36950
17-03-18 01:55:13.242 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:13.242 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:13.242 -07 000000438 INF: FPGA: Recv ZSGSRD 36950
17-03-18 01:55:13.252 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:13.252 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:13.252 -07 000000585 INF: FPGA: Recv ZSGSRD 36947
17-03-18 01:55:13.262 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:13.262 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:13.262 -07 000000438 INF: FPGA: Recv ZSGSRD 36947
17-03-18 01:55:13.272 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:13.272 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:13.272 -07 000000585 INF: FPGA: Recv ZSGSRD 36937
17-03-18 01:55:13.282 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:13.282 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:13.282 -07 000000585 INF: FPGA: Recv ZSGSRD 36947
17-03-18 01:55:13.292 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:13.292 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:13.292 -07 000000438 INF: FPGA: Recv ZSGSRD 36948
17-03-18 01:55:13.302 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:13.302 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:13.302 -07 000000585 INF: FPGA: Recv ZSGSRD 36945
17-03-18 01:55:13.312 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:13.312 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:13.312 -07 000000438 INF: FPGA: Recv ZSGSRD 36953
17-03-18 01:55:13.322 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:13.322 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:55:13.322 -07 000000585 INF: FPGA: Recv ZPIEZORD 33225
17-03-18 01:55:13.332 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:13.332 -07 000000626 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.922 V. Piezo Error = -8.2 V.
17-03-18 01:55:13.332 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.7 um, Read 10 ADC samples: Avg = 36946 (-176.8 uncal um), Error = 0.9 uncal um, Median = 36947 (-176.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36937 (-176.7 uncal um), Max = 36953 (-176.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:55:13.332 -07 000000626 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36946, posNoise = 7, negNoise = 9
17-03-18 01:55:13.332 -07 000000626 INF: Z Motor: After move to -0.177661, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:55:13.332 -07 000000626 INF: Z Motor: Settle wait time = 1448 ms, measure time = 109 ms (allowed 150 ms), total time = 1557 ms
17-03-18 01:55:13.332 -07 000000626 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:55:13.382 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 01:55:13.382 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:55:13.382 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:55:13.382 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:55:13.382 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:55:13.382 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:55:13.382 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:55:13.382 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:55:13.382 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:55:13.382 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:55:13.392 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:55:13.392 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:55:13.392 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:55:13.392 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:55:13.402 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:55:13.442 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:55:13.742 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:55:13.742 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:55:13.742 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:55:13.742 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 01:55:13.782 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:55:13.782 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 01:55:13.782 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 01:55:13.862 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:55:13.862 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:13.862 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:55:13.862 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:55:13.882 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:55:13.882 -07 000000438 INF: Autofocus start
17-03-18 01:55:13.882 -07 000000438 INF: MeasureProfile start
17-03-18 01:55:13.882 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:55:13.892 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:55:13.892 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:55:13.892 -07 000000438 INF: MeasureProfile done
17-03-18 01:55:13.902 -07 000000438 INF: X=16  Z correction [um]=0.01042744
17-03-18 01:55:13.902 -07 000000438 INF: Autofocus finished
17-03-18 01:55:14.092 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:55:14.092 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:55:14.092 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.177672293800635. ----------
17-03-18 01:55:14.092 -07 000000610 INF: Cycle	93	Tile	4	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:55:14.102 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37324, sync = True, waitForSettling = True)
17-03-18 01:55:14.102 -07 000000610 INF: Z Motor: Moving to -0.170858 mm, started at -0.177672 mm, distance = 6.81 um
17-03-18 01:55:14.102 -07 000000610 INF: FPGA: Xmit ZDACW 37324\n [Z Motor]
17-03-18 01:55:14.102 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:55:14.112 -07 000000610 INF: FPGA: 'ZDACW 37324' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:55:14.112 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:55:14.112 -07 000000438 INF: FPGA: Recv ZDACR 37324
17-03-18 01:55:14.122 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:14.122 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:55:14.272 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:14.272 -07 000000438 INF: FPGA: Recv ZSGSRD 35891
17-03-18 01:55:14.282 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:55:14.282 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:14.282 -07 000000626 INF: FPGA: Recv ZSGSRD 35886
17-03-18 01:55:14.292 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:14.292 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:14.292 -07 000000438 INF: FPGA: Recv ZSGSRD 35884
17-03-18 01:55:14.302 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:14.302 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:14.302 -07 000000626 INF: FPGA: Recv ZSGSRD 35887
17-03-18 01:55:14.312 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:14.312 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:14.312 -07 000000461 INF: FPGA: Recv ZSGSRD 35887
17-03-18 01:55:14.322 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:14.322 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:14.322 -07 000000626 INF: FPGA: Recv ZSGSRD 35887
17-03-18 01:55:14.332 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:14.332 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:14.332 -07 000000438 INF: FPGA: Recv ZSGSRD 35884
17-03-18 01:55:14.342 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:14.342 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:14.342 -07 000000585 INF: FPGA: Recv ZSGSRD 35888
17-03-18 01:55:14.352 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:14.352 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:14.352 -07 000000626 INF: FPGA: Recv ZSGSRD 35889
17-03-18 01:55:14.362 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:14.362 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:14.362 -07 000000461 INF: FPGA: Recv ZSGSRD 35888
17-03-18 01:55:14.372 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:14.372 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:55:14.372 -07 000000438 INF: FPGA: Recv ZPIEZORD 31791
17-03-18 01:55:14.382 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:55:14.382 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.695 V. Piezo Error = -9.0 V.
17-03-18 01:55:14.382 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35887 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35887 (-170.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35884 (-170.0 uncal um), Max = 35891 (-170.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:55:14.382 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35887, posNoise = 4, negNoise = 3
17-03-18 01:55:14.382 -07 000000610 INF: Z Motor: After move to -0.170858, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:55:14.382 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:55:14.382 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:55:14.382 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:55:14.382 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:55:14.382 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:55:14.382 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:55:14.382 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:55:14.382 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:55:14.382 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:55:14.382 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:55:14.382 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:55:14.382 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:55:14.382 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:55:14.392 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:55:14.392 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:55:14.392 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:55:14.392 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:55:14.402 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:55:14.402 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:55:14.402 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:55:14.402 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:55:14.402 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37501 150\n [Camera]
17-03-18 01:55:14.601 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:55:15.001 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:55:15.001 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:55:15.001 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:55:15.001 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:55:15.001 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:55:15.001 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:55:15.001 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:55:15.001 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1092550816, 0x0, 391868352) start.
17-03-18 01:55:15.011 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:55:15.011 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 01:55:15.191 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37501 777
17-03-18 01:55:15.341 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:55:15.401 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1092550816, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:55:15.401 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:55:15.401 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:15.401 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 01:55:15.401 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:55:15.401 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:15.401 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:55:15.401 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:55:15.411 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:55:15.411 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:55:15.531 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:55:15.531 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:55:15.531 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:55:15.531 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:55:15.531 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:55:15.531 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:55:15.531 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:55:15.531 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:55:15.531 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:55:15.531 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 01:55:15.721 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 01:55:15.721 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:55:15.721 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37501 150' command took 2 ms to send, 1304 ms to get response, and 1315 ms overall
17-03-18 01:55:15.721 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:55:15.721 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.17086905314251. ------
17-03-18 01:55:15.721 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17745 mm
17-03-18 01:55:15.721 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:55:15.721 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:55:15.731 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:55:15.731 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 01:55:15.731 -07 000000467 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 01:55:15.731 -07 000000592 INF: Z Motor: Entering MoveAbsStepped (DAC = 38764, sync = True, waitForSettling = False)
17-03-18 01:55:15.731 -07 000000592 INF: Z Motor: Moving to -0.177450 mm, started at -0.170869 mm, distance = -6.58 um
17-03-18 01:55:15.741 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:55:15.741 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:15.741 -07 000000444 INF: FPGA: Recv YRDPOS 127785
17-03-18 01:55:15.751 -07 000000592 INF: FPGA: Xmit ZDACW 38764\n [Z Motor]
17-03-18 01:55:15.751 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:55:15.751 -07 000000467 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:15.751 -07 000000467 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:55:15.751 -07 000000467 INF: Y Motor: Moving 1340 steps-16
17-03-18 01:55:15.751 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 01:55:15.761 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:55:15.761 -07 000000592 INF: FPGA: 'ZDACW 38764' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 01:55:15.781 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:55:15.791 -07 000000592 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:55:15.791 -07 000000455 INF: FPGA: Recv ZDACR 38764
17-03-18 01:55:15.801 -07 000000592 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 01:55:15.801 -07 000000592 INF: Z Motor: MoveAbsStepped took 64 ms (did NOT wait for settling yet))
17-03-18 01:55:15.920 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 01:55:15.930 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:55:15.930 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:15.930 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 01:55:15.930 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 01:55:15.930 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:15.930 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:55:15.930 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:55:15.930 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:55:15.940 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 01:55:15.960 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:55:15.960 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:55:16.150 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 01:55:16.150 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-18 01:55:16.200 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:16.200 -07 000000629 INF: FPGA: Recv YRDPOS 129481
17-03-18 01:55:16.210 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:55:16.210 -07 000000467 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:16.210 -07 000000467 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 01:55:16.210 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.838 mm, average velocity = 2.058 mm/sec
17-03-18 01:55:16.680 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:55:16.690 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:55:16.740 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.004458,
17-03-18 01:55:17.160 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:17.409 -07 000000626 INF: FPGA: Recv YRDPOS 129482
17-03-18 01:55:17.409 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 240 ms to get response, and 250 ms overall
17-03-18 01:55:17.409 -07 000000467 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:17.429 -07 000000467 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:55:17.429 -07 000000467 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:55:17.429 -07 000000467 INF: Y Motor: Moved to 63.2236 after 1704 ms (table move)
17-03-18 01:55:17.439 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177450 mm (DAC = 38764)
17-03-18 01:55:17.439 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:17.439 -07 000000467 INF: FPGA: Recv ZSGSRD 36917
17-03-18 01:55:17.449 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:55:17.449 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:17.449 -07 000000606 INF: FPGA: Recv ZSGSRD 36915
17-03-18 01:55:17.459 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:17.459 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:17.459 -07 000000606 INF: FPGA: Recv ZSGSRD 36915
17-03-18 01:55:17.469 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:17.469 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:17.469 -07 000000606 INF: FPGA: Recv ZSGSRD 36912
17-03-18 01:55:17.479 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:17.479 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:17.479 -07 000000626 INF: FPGA: Recv ZSGSRD 36914
17-03-18 01:55:17.489 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:17.489 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:17.489 -07 000000467 INF: FPGA: Recv ZSGSRD 36919
17-03-18 01:55:17.499 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:55:17.499 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:17.499 -07 000000585 INF: FPGA: Recv ZSGSRD 36915
17-03-18 01:55:17.509 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:17.509 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:17.509 -07 000000467 INF: FPGA: Recv ZSGSRD 36911
17-03-18 01:55:17.519 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:17.519 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:17.519 -07 000000585 INF: FPGA: Recv ZSGSRD 36905
17-03-18 01:55:17.529 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:17.529 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:17.529 -07 000000585 INF: FPGA: Recv ZSGSRD 36914
17-03-18 01:55:17.539 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:17.539 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:55:17.539 -07 000000585 INF: FPGA: Recv ZPIEZORD 33152
17-03-18 01:55:17.549 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:17.549 -07 000000461 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.915 V. Piezo Error = -8.3 V.
17-03-18 01:55:17.549 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.5 um, Read 10 ADC samples: Avg = 36914 (-176.6 uncal um), Error = 0.9 uncal um, Median = 36914 (-176.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36905 (-176.5 uncal um), Max = 36919 (-176.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:55:17.549 -07 000000461 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36914, posNoise = 5, negNoise = 9
17-03-18 01:55:17.549 -07 000000461 INF: Z Motor: After move to -0.177450, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:55:17.549 -07 000000461 INF: Z Motor: Settle wait time = 1706 ms, measure time = 109 ms (allowed 150 ms), total time = 1815 ms
17-03-18 01:55:17.549 -07 000000461 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:55:17.599 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1870 ms
17-03-18 01:55:17.599 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:55:17.599 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:55:17.599 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:55:17.599 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:55:17.599 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:55:17.599 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:55:17.599 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:55:17.599 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:55:17.599 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:55:17.609 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 01:55:17.609 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:55:17.619 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 01:55:17.619 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 01:55:17.619 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:55:17.659 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:55:17.959 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:55:17.959 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:55:17.959 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:55:17.969 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 01:55:17.999 -07 000000438 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:55:17.999 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 01:55:17.999 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 01:55:18.089 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 121 ms.
17-03-18 01:55:18.089 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:18.089 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:55:18.089 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-18 01:55:18.099 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:55:18.099 -07 000000467 INF: Autofocus start
17-03-18 01:55:18.099 -07 000000467 INF: MeasureProfile start
17-03-18 01:55:18.099 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:55:18.109 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:55:18.109 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:55:18.109 -07 000000467 INF: MeasureProfile done
17-03-18 01:55:18.109 -07 000000467 INF: X=0  Z correction [um]=-0.0713522
17-03-18 01:55:18.109 -07 000000467 INF: Autofocus finished
17-03-18 01:55:18.309 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:55:18.309 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:55:18.309 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.177466719012099. ----------
17-03-18 01:55:18.309 -07 000000610 INF: Cycle	93	Tile	5	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:55:18.319 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37261, sync = True, waitForSettling = True)
17-03-18 01:55:18.319 -07 000000610 INF: Z Motor: Moving to -0.170570 mm, started at -0.177467 mm, distance = 6.90 um
17-03-18 01:55:18.319 -07 000000610 INF: FPGA: Xmit ZDACW 37261\n [Z Motor]
17-03-18 01:55:18.319 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:55:18.329 -07 000000610 INF: FPGA: 'ZDACW 37261' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:55:18.329 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:55:18.329 -07 000000606 INF: FPGA: Recv ZDACR 37261
17-03-18 01:55:18.339 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:18.339 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:55:18.489 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:18.489 -07 000000606 INF: FPGA: Recv ZSGSRD 35842
17-03-18 01:55:18.499 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:55:18.499 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:18.499 -07 000000585 INF: FPGA: Recv ZSGSRD 35848
17-03-18 01:55:18.509 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:18.509 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:18.509 -07 000000606 INF: FPGA: Recv ZSGSRD 35841
17-03-18 01:55:18.519 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:18.519 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:18.519 -07 000000467 INF: FPGA: Recv ZSGSRD 35839
17-03-18 01:55:18.529 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:18.529 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:18.529 -07 000000569 INF: FPGA: Recv ZSGSRD 35848
17-03-18 01:55:18.539 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:18.539 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:18.539 -07 000000438 INF: FPGA: Recv ZSGSRD 35839
17-03-18 01:55:18.549 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:18.549 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:18.549 -07 000000467 INF: FPGA: Recv ZSGSRD 35846
17-03-18 01:55:18.559 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:18.559 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:18.559 -07 000000438 INF: FPGA: Recv ZSGSRD 35841
17-03-18 01:55:18.569 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:18.569 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:18.569 -07 000000455 INF: FPGA: Recv ZSGSRD 35841
17-03-18 01:55:18.579 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:18.579 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:18.579 -07 000000467 INF: FPGA: Recv ZSGSRD 35844
17-03-18 01:55:18.589 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:18.589 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:55:18.589 -07 000000455 INF: FPGA: Recv ZPIEZORD 31732
17-03-18 01:55:18.599 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:18.599 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.686 V. Piezo Error = -9.1 V.
17-03-18 01:55:18.599 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35843 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35842 (-169.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35839 (-169.7 uncal um), Max = 35848 (-169.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:55:18.599 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35843, posNoise = 5, negNoise = 4
17-03-18 01:55:18.599 -07 000000610 INF: Z Motor: After move to -0.170570, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:55:18.599 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:55:18.599 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:55:18.599 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:55:18.599 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:55:18.599 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:55:18.599 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:55:18.599 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:55:18.599 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:55:18.599 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:55:18.599 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:55:18.599 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:55:18.599 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:55:18.599 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:55:18.609 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:55:18.609 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:55:18.609 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:55:18.609 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:55:18.609 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:55:18.609 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:55:18.619 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:55:18.619 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:55:18.619 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37437 150\n [Camera]
17-03-18 01:55:18.819 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 01:55:19.208 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:55:19.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:55:19.208 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:55:19.208 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:55:19.208 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 01:55:19.208 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:55:19.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:55:19.208 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:55:19.208 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:55:19.208 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 01:55:19.398 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37437 777
17-03-18 01:55:19.548 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:55:19.608 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:55:19.608 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:55:19.608 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:19.608 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:55:19.608 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:55:19.608 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:19.608 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:55:19.608 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:55:19.618 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:55:19.618 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:55:19.738 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:55:19.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:55:19.738 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:55:19.858 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:55:19.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:55:19.868 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:55:19.868 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:55:19.868 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 01:55:19.868 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:55:19.868 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:55:19.928 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:55:19.928 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:55:19.928 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37437 150' command took 2 ms to send, 1308 ms to get response, and 1314 ms overall
17-03-18 01:55:19.938 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:55:19.938 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.170586387808273. ------
17-03-18 01:55:19.938 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:55:19.938 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17708 mm
17-03-18 01:55:19.938 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:55:19.938 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:55:19.938 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 01:55:19.938 -07 000000455 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-18 01:55:19.938 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 38683, sync = True, waitForSettling = False)
17-03-18 01:55:19.938 -07 000000629 INF: Z Motor: Moving to -0.177079 mm, started at -0.170586 mm, distance = -6.49 um
17-03-18 01:55:19.948 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:55:19.948 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:19.948 -07 000000461 INF: FPGA: Recv YRDPOS 129482
17-03-18 01:55:19.958 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:55:19.958 -07 000000629 INF: FPGA: Xmit ZDACW 38683\n [Z Motor]
17-03-18 01:55:19.958 -07 000000455 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:19.958 -07 000000455 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:55:19.958 -07 000000455 INF: Y Motor: Moving 1342 steps-19
17-03-18 01:55:19.958 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:55:19.968 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:55:19.968 -07 000000629 INF: FPGA: 'ZDACW 38683' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 01:55:19.978 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:55:19.988 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:55:19.988 -07 000000467 INF: FPGA: Recv ZDACR 38683
17-03-18 01:55:19.998 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:55:19.998 -07 000000629 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 01:55:20.168 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:55:20.168 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:55:20.268 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:55:20.268 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:55:20.268 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:55:20.268 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:20.268 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:55:20.268 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:20.268 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:20.268 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-18 01:55:20.268 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:20.278 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:55:20.348 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 01:55:20.348 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:55:20.397 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:20.397 -07 000000569 INF: FPGA: Recv YRDPOS 131187
17-03-18 01:55:20.407 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:55:20.407 -07 000000455 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:20.407 -07 000000455 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 01:55:20.407 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.108 mm/sec
17-03-18 01:55:21.357 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:21.357 -07 000000606 INF: FPGA: Recv YRDPOS 131187
17-03-18 01:55:21.367 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:55:21.367 -07 000000455 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:21.387 -07 000000455 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:55:21.387 -07 000000455 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:55:21.387 -07 000000455 INF: Y Motor: Moved to 64.0562 after 1447 ms (table move)
17-03-18 01:55:21.397 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177079 mm (DAC = 38683)
17-03-18 01:55:21.397 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:21.397 -07 000000455 INF: FPGA: Recv ZSGSRD 36858
17-03-18 01:55:21.407 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:21.407 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:21.407 -07 000000455 INF: FPGA: Recv ZSGSRD 36863
17-03-18 01:55:21.417 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:21.417 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:21.417 -07 000000455 INF: FPGA: Recv ZSGSRD 36857
17-03-18 01:55:21.427 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:21.427 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:21.427 -07 000000455 INF: FPGA: Recv ZSGSRD 36851
17-03-18 01:55:21.437 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:21.437 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:21.437 -07 000000455 INF: FPGA: Recv ZSGSRD 36848
17-03-18 01:55:21.447 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:21.447 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:21.447 -07 000000585 INF: FPGA: Recv ZSGSRD 36856
17-03-18 01:55:21.457 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:21.457 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:21.457 -07 000000585 INF: FPGA: Recv ZSGSRD 36854
17-03-18 01:55:21.467 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:21.467 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:21.467 -07 000000438 INF: FPGA: Recv ZSGSRD 36850
17-03-18 01:55:21.477 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:21.477 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:21.477 -07 000000606 INF: FPGA: Recv ZSGSRD 36857
17-03-18 01:55:21.487 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:21.487 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:21.487 -07 000000461 INF: FPGA: Recv ZSGSRD 36860
17-03-18 01:55:21.497 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:21.497 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:55:21.497 -07 000000467 INF: FPGA: Recv ZPIEZORD 33106
17-03-18 01:55:21.507 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:21.507 -07 000000626 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.903 V. Piezo Error = -8.3 V.
17-03-18 01:55:21.507 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36855 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36856 (-176.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36848 (-176.2 uncal um), Max = 36863 (-176.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:55:21.507 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36855, posNoise = 8, negNoise = 7
17-03-18 01:55:21.507 -07 000000626 INF: Z Motor: After move to -0.177079, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:55:21.507 -07 000000626 INF: Z Motor: Settle wait time = 1451 ms, measure time = 111 ms (allowed 150 ms), total time = 1562 ms
17-03-18 01:55:21.507 -07 000000626 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:55:21.547 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-18 01:55:21.547 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:55:21.547 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:55:21.547 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:55:21.547 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:55:21.547 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:55:21.547 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:55:21.547 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:55:21.547 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:55:21.547 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:55:21.557 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:55:21.557 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:55:21.567 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:55:21.567 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:55:21.567 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:55:21.617 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:55:21.677 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:55:21.687 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:55:21.916 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:55:21.916 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:55:21.916 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:55:21.916 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) start.
17-03-18 01:55:21.956 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:55:21.956 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 01:55:21.956 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 01:55:22.036 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 01:55:22.036 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:22.036 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:55:22.036 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-18 01:55:22.056 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:55:22.056 -07 000000606 INF: Autofocus start
17-03-18 01:55:22.056 -07 000000606 INF: MeasureProfile start
17-03-18 01:55:22.056 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:55:22.066 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:55:22.066 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:55:22.066 -07 000000606 INF: MeasureProfile done
17-03-18 01:55:22.066 -07 000000606 INF: X=-80  Z correction [um]=-0.4885566
17-03-18 01:55:22.066 -07 000000606 INF: Autofocus finished
17-03-18 01:55:22.266 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:55:22.266 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:55:22.266 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.177087690495735. ----------
17-03-18 01:55:22.266 -07 000000610 INF: Cycle	93	Tile	6	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:55:22.276 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37088, sync = True, waitForSettling = True)
17-03-18 01:55:22.276 -07 000000610 INF: Z Motor: Moving to -0.169778 mm, started at -0.177088 mm, distance = 7.31 um
17-03-18 01:55:22.276 -07 000000610 INF: FPGA: Xmit ZDACW 37088\n [Z Motor]
17-03-18 01:55:22.276 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:55:22.286 -07 000000610 INF: FPGA: 'ZDACW 37088' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:55:22.286 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:55:22.286 -07 000000569 INF: FPGA: Recv ZDACR 37088
17-03-18 01:55:22.296 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:22.296 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:55:22.446 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:22.446 -07 000000626 INF: FPGA: Recv ZSGSRD 35723
17-03-18 01:55:22.456 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:22.456 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:22.456 -07 000000569 INF: FPGA: Recv ZSGSRD 35726
17-03-18 01:55:22.466 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:22.466 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:22.466 -07 000000626 INF: FPGA: Recv ZSGSRD 35717
17-03-18 01:55:22.476 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:22.476 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:22.476 -07 000000626 INF: FPGA: Recv ZSGSRD 35722
17-03-18 01:55:22.486 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:22.486 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:22.486 -07 000000569 INF: FPGA: Recv ZSGSRD 35718
17-03-18 01:55:22.496 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:22.496 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:22.496 -07 000000462 INF: FPGA: Recv ZSGSRD 35723
17-03-18 01:55:22.506 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:22.506 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:22.506 -07 000000569 INF: FPGA: Recv ZSGSRD 35720
17-03-18 01:55:22.516 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:22.516 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:22.516 -07 000000626 INF: FPGA: Recv ZSGSRD 35716
17-03-18 01:55:22.526 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:22.526 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:22.526 -07 000000462 INF: FPGA: Recv ZSGSRD 35719
17-03-18 01:55:22.536 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:22.536 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:22.536 -07 000000626 INF: FPGA: Recv ZSGSRD 35722
17-03-18 01:55:22.546 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:22.546 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:55:22.546 -07 000000462 INF: FPGA: Recv ZPIEZORD 31611
17-03-18 01:55:22.556 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:22.556 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.659 V. Piezo Error = -9.1 V.
17-03-18 01:55:22.556 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35721 (-168.9 uncal um), Error = 0.8 uncal um, Median = 35721 (-168.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35716 (-168.9 uncal um), Max = 35726 (-169.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:55:22.556 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35721, posNoise = 5, negNoise = 5
17-03-18 01:55:22.556 -07 000000610 INF: Z Motor: After move to -0.169778, error = -0.000025, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:55:22.556 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:55:22.556 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:55:22.556 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:55:22.556 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:55:22.556 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:55:22.556 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:55:22.556 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:55:22.556 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:55:22.556 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:55:22.556 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:55:22.556 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:55:22.556 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:55:22.556 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:55:22.566 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:55:22.566 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:55:22.566 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:55:22.566 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:55:22.576 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:55:22.576 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:55:22.576 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:55:22.576 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:55:22.576 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37265 150\n [Camera]
17-03-18 01:55:22.736 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 3.981281,
17-03-18 01:55:22.776 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:55:23.166 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:55:23.166 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:55:23.166 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:55:23.166 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:55:23.166 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:55:23.166 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:55:23.176 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:55:23.176 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 01:55:23.176 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:55:23.176 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 01:55:23.356 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37265 777
17-03-18 01:55:23.505 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:55:23.555 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 01:55:23.555 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 01:55:23.555 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:23.555 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 01:55:23.555 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 01:55:23.555 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:23.565 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:23.565 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:55:23.565 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:23.565 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:55:23.695 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:55:23.695 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:55:23.695 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:55:23.805 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:55:23.805 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:55:23.815 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:55:23.815 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:55:23.815 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:55:23.815 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:55:23.815 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:55:23.885 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:55:23.885 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:55:23.885 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37265 150' command took 2 ms to send, 1307 ms to get response, and 1314 ms overall
17-03-18 01:55:23.885 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:55:23.885 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.169802633926978. ------
17-03-18 01:55:23.895 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:55:23.895 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17634 mm
17-03-18 01:55:23.895 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:55:23.895 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 01:55:23.895 -07 000000569 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 01:55:23.895 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:55:23.895 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38522, sync = True, waitForSettling = False)
17-03-18 01:55:23.895 -07 000000438 INF: Z Motor: Moving to -0.176342 mm, started at -0.169803 mm, distance = -6.54 um
17-03-18 01:55:23.905 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:55:23.905 -07 000000438 INF: FPGA: Xmit ZDACW 38522\n [Z Motor]
17-03-18 01:55:23.905 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 01:55:23.915 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:23.915 -07 000000438 INF: FPGA: 'ZDACW 38522' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:55:23.915 -07 000000455 INF: FPGA: Recv YRDPOS 131188
17-03-18 01:55:23.925 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:55:23.925 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:55:23.925 -07 000000569 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:23.925 -07 000000569 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:55:23.925 -07 000000569 INF: Y Motor: Moving 1338 steps-13
17-03-18 01:55:23.935 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:55:23.935 -07 000000461 INF: FPGA: Recv ZDACR 38522
17-03-18 01:55:23.945 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:55:23.945 -07 000000438 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 01:55:23.945 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:55:24.125 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:55:24.125 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:55:24.215 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:55:24.215 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:55:24.215 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:24.215 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:55:24.215 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:55:24.215 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:24.215 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:24.215 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:24.215 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-18 01:55:24.225 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 01:55:24.315 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 01:55:24.315 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 01:55:24.365 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:24.365 -07 000000611 INF: FPGA: Recv YRDPOS 132871
17-03-18 01:55:24.375 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:24.375 -07 000000569 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:24.375 -07 000000569 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 01:55:24.375 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.836 mm, average velocity = 2.139 mm/sec
17-03-18 01:55:25.324 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:25.324 -07 000000611 INF: FPGA: Recv YRDPOS 132871
17-03-18 01:55:25.334 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:55:25.334 -07 000000569 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:25.354 -07 000000569 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:55:25.354 -07 000000569 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:55:25.354 -07 000000569 INF: Y Motor: Moved to 64.8784 after 1460 ms (table move)
17-03-18 01:55:25.364 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176342 mm (DAC = 38522)
17-03-18 01:55:25.364 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:25.364 -07 000000455 INF: FPGA: Recv ZSGSRD 36741
17-03-18 01:55:25.374 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:25.374 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:25.374 -07 000000569 INF: FPGA: Recv ZSGSRD 36743
17-03-18 01:55:25.384 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:25.384 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:25.384 -07 000000585 INF: FPGA: Recv ZSGSRD 36740
17-03-18 01:55:25.394 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:25.394 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:25.394 -07 000000455 INF: FPGA: Recv ZSGSRD 36742
17-03-18 01:55:25.404 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:25.404 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:25.404 -07 000000438 INF: FPGA: Recv ZSGSRD 36738
17-03-18 01:55:25.414 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:25.414 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:25.414 -07 000000611 INF: FPGA: Recv ZSGSRD 36742
17-03-18 01:55:25.424 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:25.424 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:25.424 -07 000000569 INF: FPGA: Recv ZSGSRD 36740
17-03-18 01:55:25.434 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:25.434 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:25.434 -07 000000438 INF: FPGA: Recv ZSGSRD 36737
17-03-18 01:55:25.444 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:25.444 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:25.444 -07 000000569 INF: FPGA: Recv ZSGSRD 36742
17-03-18 01:55:25.454 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:25.454 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:25.454 -07 000000611 INF: FPGA: Recv ZSGSRD 36746
17-03-18 01:55:25.464 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:25.464 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:55:25.464 -07 000000569 INF: FPGA: Recv ZPIEZORD 32944
17-03-18 01:55:25.474 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:25.474 -07 000000629 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.878 V. Piezo Error = -8.4 V.
17-03-18 01:55:25.474 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36741 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36742 (-175.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36737 (-175.4 uncal um), Max = 36746 (-175.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:55:25.474 -07 000000629 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36741, posNoise = 5, negNoise = 4
17-03-18 01:55:25.474 -07 000000629 INF: Z Motor: After move to -0.176342, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:55:25.474 -07 000000629 INF: Z Motor: Settle wait time = 1463 ms, measure time = 110 ms (allowed 150 ms), total time = 1573 ms
17-03-18 01:55:25.474 -07 000000629 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:55:25.514 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 01:55:25.514 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:55:25.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:55:25.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:55:25.514 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:55:25.514 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:55:25.514 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:55:25.514 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:55:25.514 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:55:25.514 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:55:25.524 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:55:25.524 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:55:25.534 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:55:25.534 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 01:55:25.534 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:55:25.584 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:55:25.884 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:55:25.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:55:25.884 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:55:25.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1163922192, 0x0, 559484976) start.
17-03-18 01:55:25.914 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:55:25.924 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 01:55:25.924 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 01:55:26.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1163922192, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:55:26.014 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:26.014 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:55:26.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-18 01:55:26.024 -07 000000611 INF: Autofocus start
17-03-18 01:55:26.024 -07 000000611 INF: MeasureProfile start
17-03-18 01:55:26.024 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:55:26.024 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:55:26.034 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:55:26.034 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:55:26.034 -07 000000611 INF: MeasureProfile done
17-03-18 01:55:26.034 -07 000000611 INF: X=0  Z correction [um]=-0.0713522
17-03-18 01:55:26.034 -07 000000611 INF: Autofocus finished
17-03-18 01:55:26.234 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:55:26.234 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 01:55:26.234 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.176355330311574. ----------
17-03-18 01:55:26.244 -07 000000610 INF: Cycle	93	Tile	7	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:55:26.244 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37019, sync = True, waitForSettling = True)
17-03-18 01:55:26.244 -07 000000610 INF: Z Motor: Moving to -0.169462 mm, started at -0.176355 mm, distance = 6.89 um
17-03-18 01:55:26.244 -07 000000610 INF: FPGA: Xmit ZDACW 37019\n [Z Motor]
17-03-18 01:55:26.244 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:55:26.254 -07 000000610 INF: FPGA: 'ZDACW 37019' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:55:26.254 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:55:26.254 -07 000000455 INF: FPGA: Recv ZDACR 37019
17-03-18 01:55:26.264 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:26.264 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:55:26.413 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:26.413 -07 000000467 INF: FPGA: Recv ZSGSRD 35665
17-03-18 01:55:26.423 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:55:26.423 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:26.423 -07 000000461 INF: FPGA: Recv ZSGSRD 35670
17-03-18 01:55:26.433 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:26.433 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:26.433 -07 000000462 INF: FPGA: Recv ZSGSRD 35663
17-03-18 01:55:26.443 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:26.443 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:26.443 -07 000000461 INF: FPGA: Recv ZSGSRD 35666
17-03-18 01:55:26.453 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:26.453 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:26.453 -07 000000461 INF: FPGA: Recv ZSGSRD 35671
17-03-18 01:55:26.463 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:26.463 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:26.463 -07 000000461 INF: FPGA: Recv ZSGSRD 35668
17-03-18 01:55:26.473 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:26.473 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:26.473 -07 000000611 INF: FPGA: Recv ZSGSRD 35664
17-03-18 01:55:26.483 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:26.483 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:26.483 -07 000000611 INF: FPGA: Recv ZSGSRD 35668
17-03-18 01:55:26.493 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:26.493 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:26.493 -07 000000626 INF: FPGA: Recv ZSGSRD 35672
17-03-18 01:55:26.503 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:26.513 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:26.513 -07 000000461 INF: FPGA: Recv ZSGSRD 35663
17-03-18 01:55:26.523 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:55:26.523 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:55:26.523 -07 000000629 INF: FPGA: Recv ZPIEZORD 31524
17-03-18 01:55:26.533 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:26.533 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.649 V. Piezo Error = -9.1 V.
17-03-18 01:55:26.533 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35667 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35667 (-168.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35663 (-168.6 uncal um), Max = 35672 (-168.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:55:26.533 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35667, posNoise = 5, negNoise = 4
17-03-18 01:55:26.533 -07 000000610 INF: Z Motor: After move to -0.169462, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:55:26.533 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 01:55:26.533 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:55:26.533 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:55:26.533 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:55:26.533 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:55:26.533 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:55:26.533 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:55:26.533 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:55:26.533 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:55:26.533 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:55:26.533 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:55:26.533 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:55:26.533 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:55:26.543 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:55:26.543 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:55:26.543 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:55:26.543 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:55:26.543 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:55:26.543 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 01:55:26.553 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:55:26.553 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:55:26.573 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37196 150\n [Camera]
17-03-18 01:55:26.673 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:55:26.683 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:55:26.763 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:55:27.163 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:55:27.163 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:55:27.163 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:55:27.163 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:55:27.163 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:55:27.163 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:55:27.163 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:55:27.163 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:55:27.163 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:55:27.163 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:55:27.353 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37196 777
17-03-18 01:55:27.503 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:55:27.553 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 01:55:27.553 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:55:27.553 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:27.553 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 01:55:27.553 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:55:27.553 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:27.563 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:27.563 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:55:27.563 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:27.573 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 01:55:27.693 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:55:27.693 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:55:27.693 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:55:27.803 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:55:27.803 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:55:27.803 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:55:27.813 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:55:27.813 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:55:27.813 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:55:27.813 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:55:27.882 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 01:55:27.882 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:55:27.882 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37196 150' command took 2 ms to send, 1304 ms to get response, and 1333 ms overall
17-03-18 01:55:27.882 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:55:27.882 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.169455726471323. ------
17-03-18 01:55:27.882 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:55:27.892 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17608 mm
17-03-18 01:55:27.892 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:55:27.892 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:55:27.892 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 01:55:27.892 -07 000000626 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 01:55:27.892 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 38466, sync = True, waitForSettling = False)
17-03-18 01:55:27.892 -07 000000611 INF: Z Motor: Moving to -0.176086 mm, started at -0.169456 mm, distance = -6.63 um
17-03-18 01:55:27.902 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:55:27.902 -07 000000611 INF: FPGA: Xmit ZDACW 38466\n [Z Motor]
17-03-18 01:55:27.902 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 01:55:27.912 -07 000000611 INF: FPGA: 'ZDACW 38466' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 01:55:27.912 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:27.912 -07 000000467 INF: FPGA: Recv YRDPOS 132871
17-03-18 01:55:27.922 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:55:27.922 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:55:27.922 -07 000000626 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:27.922 -07 000000626 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:55:27.922 -07 000000626 INF: Y Motor: Moving 1351 steps-29
17-03-18 01:55:27.932 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:55:27.932 -07 000000444 INF: FPGA: Recv ZDACR 38466
17-03-18 01:55:27.942 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:55:27.942 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:55:27.942 -07 000000611 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 01:55:28.122 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 3.964938,
17-03-18 01:55:28.122 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:55:28.122 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:55:28.202 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 01:55:28.202 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 01:55:28.202 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:28.202 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 01:55:28.202 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 01:55:28.202 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:28.202 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:28.202 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:28.202 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-18 01:55:28.212 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 01:55:28.312 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 01:55:28.312 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 01:55:28.362 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:28.362 -07 000000461 INF: FPGA: Recv YRDPOS 134581
17-03-18 01:55:28.372 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:28.372 -07 000000626 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:28.372 -07 000000626 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 01:55:28.372 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.844 mm, average velocity = 2.137 mm/sec
17-03-18 01:55:29.322 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:29.322 -07 000000502 INF: FPGA: Recv YRDPOS 134581
17-03-18 01:55:29.331 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:55:29.331 -07 000000626 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:29.361 -07 000000626 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:55:29.361 -07 000000626 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:55:29.361 -07 000000626 INF: Y Motor: Moved to 65.7134 after 1468 ms (table move)
17-03-18 01:55:29.361 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176086 mm (DAC = 38466)
17-03-18 01:55:29.361 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:29.361 -07 000000611 INF: FPGA: Recv ZSGSRD 36705
17-03-18 01:55:29.371 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:55:29.371 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:29.371 -07 000000467 INF: FPGA: Recv ZSGSRD 36705
17-03-18 01:55:29.381 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:29.381 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:29.381 -07 000000502 INF: FPGA: Recv ZSGSRD 36702
17-03-18 01:55:29.391 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:29.391 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:29.391 -07 000000467 INF: FPGA: Recv ZSGSRD 36701
17-03-18 01:55:29.401 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:29.401 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:29.401 -07 000000569 INF: FPGA: Recv ZSGSRD 36697
17-03-18 01:55:29.411 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:29.411 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:29.411 -07 000000462 INF: FPGA: Recv ZSGSRD 36702
17-03-18 01:55:29.421 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:29.421 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:29.421 -07 000000569 INF: FPGA: Recv ZSGSRD 36696
17-03-18 01:55:29.431 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:29.431 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:29.431 -07 000000611 INF: FPGA: Recv ZSGSRD 36698
17-03-18 01:55:29.441 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:29.441 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:29.441 -07 000000569 INF: FPGA: Recv ZSGSRD 36701
17-03-18 01:55:29.451 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:29.451 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:29.451 -07 000000455 INF: FPGA: Recv ZSGSRD 36703
17-03-18 01:55:29.461 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:29.461 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:55:29.461 -07 000000502 INF: FPGA: Recv ZPIEZORD 32924
17-03-18 01:55:29.471 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:29.471 -07 000000629 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.870 V. Piezo Error = -8.4 V.
17-03-18 01:55:29.471 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.1 um, Read 10 ADC samples: Avg = 36701 (-175.2 uncal um), Error = 0.9 uncal um, Median = 36702 (-175.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36696 (-175.2 uncal um), Max = 36705 (-175.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:55:29.471 -07 000000629 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36701, posNoise = 4, negNoise = 5
17-03-18 01:55:29.471 -07 000000629 INF: Z Motor: After move to -0.176086, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:55:29.471 -07 000000629 INF: Z Motor: Settle wait time = 1471 ms, measure time = 105 ms (allowed 150 ms), total time = 1576 ms
17-03-18 01:55:29.471 -07 000000629 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 01:55:29.521 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1630 ms
17-03-18 01:55:29.521 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:55:29.521 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:55:29.521 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:55:29.521 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:55:29.521 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:55:29.521 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:55:29.521 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:55:29.521 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:55:29.521 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:55:29.531 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:55:29.531 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:55:29.541 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:55:29.541 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 01:55:29.541 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:55:29.591 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:55:29.891 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:55:29.891 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:55:29.891 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:55:29.891 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 01:55:29.931 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:55:29.931 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 01:55:29.931 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 385 ms to get response, and 387 ms overall
17-03-18 01:55:30.021 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:55:30.021 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:30.021 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:55:30.021 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 01:55:30.031 -07 000000467 INF: Autofocus start
17-03-18 01:55:30.031 -07 000000467 INF: MeasureProfile start
17-03-18 01:55:30.031 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:55:30.031 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:55:30.041 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:55:30.041 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:55:30.041 -07 000000467 INF: MeasureProfile done
17-03-18 01:55:30.041 -07 000000467 INF: X=32  Z correction [um]=0.09220707
17-03-18 01:55:30.041 -07 000000467 INF: Autofocus finished
17-03-18 01:55:30.241 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:55:30.241 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 01:55:30.241 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.176098361825904. ----------
17-03-18 01:55:30.241 -07 000000610 INF: Cycle	93	Tile	8	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:55:30.251 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36998, sync = True, waitForSettling = True)
17-03-18 01:55:30.251 -07 000000610 INF: Z Motor: Moving to -0.169366 mm, started at -0.176098 mm, distance = 6.73 um
17-03-18 01:55:30.251 -07 000000610 INF: FPGA: Xmit ZDACW 36998\n [Z Motor]
17-03-18 01:55:30.251 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:55:30.261 -07 000000610 INF: FPGA: 'ZDACW 36998' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:55:30.261 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:55:30.261 -07 000000626 INF: FPGA: Recv ZDACR 36998
17-03-18 01:55:30.271 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:30.271 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:55:30.421 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:30.421 -07 000000462 INF: FPGA: Recv ZSGSRD 35653
17-03-18 01:55:30.431 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:55:30.431 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:30.431 -07 000000444 INF: FPGA: Recv ZSGSRD 35652
17-03-18 01:55:30.441 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:30.441 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:30.441 -07 000000626 INF: FPGA: Recv ZSGSRD 35652
17-03-18 01:55:30.451 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:30.451 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:30.451 -07 000000502 INF: FPGA: Recv ZSGSRD 35654
17-03-18 01:55:30.461 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:30.461 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:30.461 -07 000000461 INF: FPGA: Recv ZSGSRD 35661
17-03-18 01:55:30.471 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:30.471 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:30.471 -07 000000585 INF: FPGA: Recv ZSGSRD 35653
17-03-18 01:55:30.481 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:30.481 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:30.481 -07 000000611 INF: FPGA: Recv ZSGSRD 35655
17-03-18 01:55:30.491 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:30.491 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:30.491 -07 000000444 INF: FPGA: Recv ZSGSRD 35655
17-03-18 01:55:30.501 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:30.501 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:30.501 -07 000000462 INF: FPGA: Recv ZSGSRD 35656
17-03-18 01:55:30.511 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:30.511 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:30.511 -07 000000502 INF: FPGA: Recv ZSGSRD 35652
17-03-18 01:55:30.521 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:30.521 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:55:30.521 -07 000000611 INF: FPGA: Recv ZPIEZORD 31513
17-03-18 01:55:30.531 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:30.531 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.646 V. Piezo Error = -9.1 V.
17-03-18 01:55:30.531 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35654 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35654 (-168.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35652 (-168.5 uncal um), Max = 35661 (-168.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 01:55:30.531 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35654, posNoise = 7, negNoise = 2
17-03-18 01:55:30.531 -07 000000610 INF: Z Motor: After move to -0.169366, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:55:30.531 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:55:30.531 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:55:30.531 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:55:30.531 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:55:30.531 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:55:30.531 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:55:30.531 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:55:30.531 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:55:30.531 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:55:30.531 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:55:30.531 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:55:30.531 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:55:30.531 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:55:30.531 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:55:30.531 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:55:30.531 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:55:30.541 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:55:30.541 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:55:30.541 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:55:30.551 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:55:30.551 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:55:30.551 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37175 150\n [Camera]
17-03-18 01:55:30.751 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:55:31.140 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:55:31.140 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:55:31.140 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:55:31.140 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:55:31.140 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:55:31.140 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:55:31.140 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:55:31.140 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:55:31.140 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:55:31.150 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:55:31.330 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37175 777
17-03-18 01:55:31.480 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:55:31.540 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:55:31.540 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:55:31.540 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:31.540 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 01:55:31.540 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:55:31.540 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:31.540 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:31.540 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:55:31.540 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:31.550 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 01:55:31.670 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:55:31.670 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:55:31.670 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:55:31.780 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:55:31.780 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:55:31.780 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:55:31.780 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:55:31.780 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:55:31.790 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:55:31.790 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:55:31.790 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:55:31.790 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:55:31.860 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:55:31.860 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:55:31.860 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37175 150' command took 2 ms to send, 1309 ms to get response, and 1315 ms overall
17-03-18 01:55:31.870 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:55:31.870 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.16937221171348. ------
17-03-18 01:55:31.870 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:55:31.870 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17573 mm
17-03-18 01:55:31.870 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:55:31.870 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 01:55:31.870 -07 000000585 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 01:55:31.870 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:55:31.870 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 38388, sync = True, waitForSettling = False)
17-03-18 01:55:31.870 -07 000000629 INF: Z Motor: Moving to -0.175729 mm, started at -0.169372 mm, distance = -6.36 um
17-03-18 01:55:31.880 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:55:31.890 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:31.890 -07 000000502 INF: FPGA: Recv YRDPOS 134581
17-03-18 01:55:31.900 -07 000000629 INF: FPGA: Xmit ZDACW 38388\n [Z Motor]
17-03-18 01:55:31.900 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 01:55:31.900 -07 000000585 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:31.900 -07 000000585 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:55:31.900 -07 000000585 INF: Y Motor: Moving 1343 steps-19
17-03-18 01:55:31.900 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 01:55:31.910 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:55:31.910 -07 000000629 INF: FPGA: 'ZDACW 38388' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 01:55:31.930 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:55:31.940 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:55:31.940 -07 000000502 INF: FPGA: Recv ZDACR 38388
17-03-18 01:55:31.950 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 01:55:31.950 -07 000000629 INF: Z Motor: MoveAbsStepped took 72 ms (did NOT wait for settling yet))
17-03-18 01:55:32.110 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:55:32.110 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 01:55:32.180 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 01:55:32.180 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:55:32.180 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:32.180 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 01:55:32.180 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 01:55:32.180 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:32.190 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:32.190 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms.
17-03-18 01:55:32.190 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:32.200 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:55:32.310 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 01:55:32.310 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 408 ms overall
17-03-18 01:55:32.349 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:32.349 -07 000000611 INF: FPGA: Recv YRDPOS 136271
17-03-18 01:55:32.359 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:55:32.359 -07 000000585 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:32.359 -07 000000585 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 01:55:32.359 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 410 ms, distance = 0.839 mm, average velocity = 2.047 mm/sec
17-03-18 01:55:33.309 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:33.309 -07 000000462 INF: FPGA: Recv YRDPOS 136271
17-03-18 01:55:33.319 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:33.319 -07 000000585 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:33.349 -07 000000585 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:55:33.349 -07 000000585 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:55:33.349 -07 000000585 INF: Y Motor: Moved to 66.5386 after 1473 ms (table move)
17-03-18 01:55:33.349 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175729 mm (DAC = 38388)
17-03-18 01:55:33.349 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:33.349 -07 000000444 INF: FPGA: Recv ZSGSRD 36646
17-03-18 01:55:33.359 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:55:33.359 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:33.359 -07 000000611 INF: FPGA: Recv ZSGSRD 36639
17-03-18 01:55:33.369 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:33.369 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:33.369 -07 000000569 INF: FPGA: Recv ZSGSRD 36645
17-03-18 01:55:33.379 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:33.379 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:33.379 -07 000000629 INF: FPGA: Recv ZSGSRD 36642
17-03-18 01:55:33.389 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:33.389 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:33.389 -07 000000444 INF: FPGA: Recv ZSGSRD 36645
17-03-18 01:55:33.399 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:33.399 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:33.399 -07 000000502 INF: FPGA: Recv ZSGSRD 36655
17-03-18 01:55:33.409 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:33.409 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:33.409 -07 000000462 INF: FPGA: Recv ZSGSRD 36648
17-03-18 01:55:33.419 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:33.419 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:33.419 -07 000000629 INF: FPGA: Recv ZSGSRD 36643
17-03-18 01:55:33.429 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:33.429 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:33.429 -07 000000585 INF: FPGA: Recv ZSGSRD 36637
17-03-18 01:55:33.439 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:33.439 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:33.439 -07 000000502 INF: FPGA: Recv ZSGSRD 36643
17-03-18 01:55:33.449 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:33.449 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:55:33.449 -07 000000569 INF: FPGA: Recv ZPIEZORD 32843
17-03-18 01:55:33.459 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:33.459 -07 000000626 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.858 V. Piezo Error = -8.4 V.
17-03-18 01:55:33.459 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36644 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36644 (-174.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36637 (-174.8 uncal um), Max = 36655 (-174.9 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:55:33.459 -07 000000626 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36644, posNoise = 11, negNoise = 7
17-03-18 01:55:33.459 -07 000000626 INF: Z Motor: After move to -0.175729, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:55:33.459 -07 000000626 INF: Z Motor: Settle wait time = 1476 ms, measure time = 107 ms (allowed 150 ms), total time = 1583 ms
17-03-18 01:55:33.459 -07 000000626 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 01:55:33.479 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 3.974486,
17-03-18 01:55:33.509 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-18 01:55:33.509 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:55:33.509 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:55:33.509 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:55:33.509 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:55:33.509 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:55:33.509 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:55:33.509 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:55:33.519 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:55:33.519 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:55:33.519 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:55:33.519 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:55:33.519 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:55:33.519 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:55:33.529 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:55:33.569 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:55:33.868 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:55:33.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:55:33.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:55:33.878 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 01:55:33.908 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:55:33.908 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 01:55:33.908 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 01:55:33.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:55:33.988 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:33.988 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:55:33.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 01:55:34.008 -07 000000462 INF: Autofocus start
17-03-18 01:55:34.008 -07 000000462 INF: MeasureProfile start
17-03-18 01:55:34.008 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:55:34.008 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:55:34.018 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:55:34.018 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:55:34.018 -07 000000462 INF: MeasureProfile done
17-03-18 01:55:34.018 -07 000000462 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 01:55:34.018 -07 000000462 INF: Autofocus finished
17-03-18 01:55:34.218 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:55:34.218 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:55:34.218 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.175732181733823. ----------
17-03-18 01:55:34.228 -07 000000610 INF: Cycle	93	Tile	9	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:55:34.228 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36868, sync = True, waitForSettling = True)
17-03-18 01:55:34.228 -07 000000610 INF: Z Motor: Moving to -0.168771 mm, started at -0.175732 mm, distance = 6.96 um
17-03-18 01:55:34.228 -07 000000610 INF: FPGA: Xmit ZDACW 36868\n [Z Motor]
17-03-18 01:55:34.228 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:55:34.238 -07 000000610 INF: FPGA: 'ZDACW 36868' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:55:34.238 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:55:34.238 -07 000000626 INF: FPGA: Recv ZDACR 36868
17-03-18 01:55:34.248 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:34.248 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:55:34.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:34.398 -07 000000626 INF: FPGA: Recv ZSGSRD 35562
17-03-18 01:55:34.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:55:34.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:34.408 -07 000000626 INF: FPGA: Recv ZSGSRD 35565
17-03-18 01:55:34.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:34.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:34.418 -07 000000626 INF: FPGA: Recv ZSGSRD 35566
17-03-18 01:55:34.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:34.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:34.428 -07 000000606 INF: FPGA: Recv ZSGSRD 35565
17-03-18 01:55:34.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:34.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:34.438 -07 000000569 INF: FPGA: Recv ZSGSRD 35558
17-03-18 01:55:34.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:34.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:34.448 -07 000000569 INF: FPGA: Recv ZSGSRD 35566
17-03-18 01:55:34.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:34.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:34.458 -07 000000569 INF: FPGA: Recv ZSGSRD 35564
17-03-18 01:55:34.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:34.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:34.468 -07 000000569 INF: FPGA: Recv ZSGSRD 35559
17-03-18 01:55:34.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:34.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:34.478 -07 000000629 INF: FPGA: Recv ZSGSRD 35563
17-03-18 01:55:34.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:34.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:34.488 -07 000000629 INF: FPGA: Recv ZSGSRD 35562
17-03-18 01:55:34.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:34.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:55:34.498 -07 000000629 INF: FPGA: Recv ZPIEZORD 31382
17-03-18 01:55:34.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:34.508 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.626 V. Piezo Error = -9.2 V.
17-03-18 01:55:34.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35563 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35564 (-167.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35558 (-167.9 uncal um), Max = 35566 (-167.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:55:34.508 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35563, posNoise = 3, negNoise = 5
17-03-18 01:55:34.508 -07 000000610 INF: Z Motor: After move to -0.168771, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:55:34.508 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:55:34.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:55:34.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:55:34.508 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:55:34.508 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:55:34.508 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:55:34.508 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:55:34.508 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:55:34.508 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:55:34.508 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:55:34.508 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:55:34.508 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:55:34.508 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:55:34.518 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:55:34.518 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:55:34.518 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:55:34.518 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:55:34.528 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:55:34.528 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:55:34.528 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:55:34.528 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:55:34.538 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37044 150\n [Camera]
17-03-18 01:55:34.738 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:55:35.128 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:55:35.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:55:35.128 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:55:35.128 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:55:35.128 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:55:35.128 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:55:35.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:55:35.128 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:55:35.128 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:55:35.128 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:55:35.317 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37044 777
17-03-18 01:55:35.467 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:55:35.517 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 01:55:35.517 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 01:55:35.517 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:35.517 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 01:55:35.517 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:55:35.517 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:35.527 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:35.527 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:35.527 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:55:35.527 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:55:35.657 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:55:35.657 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:55:35.657 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:55:35.767 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:55:35.767 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:55:35.767 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:55:35.777 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:55:35.777 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:55:35.777 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:55:35.777 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:55:35.847 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 01:55:35.847 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:55:35.847 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37044 150' command took 2 ms to send, 1305 ms to get response, and 1314 ms overall
17-03-18 01:55:35.847 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:55:35.847 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.16878760840858. ------
17-03-18 01:55:35.857 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:55:35.857 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17564 mm
17-03-18 01:55:35.857 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:55:35.857 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:55:35.857 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 01:55:35.857 -07 000000569 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 01:55:35.857 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 38369, sync = True, waitForSettling = False)
17-03-18 01:55:35.857 -07 000000585 INF: Z Motor: Moving to -0.175642 mm, started at -0.168788 mm, distance = -6.85 um
17-03-18 01:55:35.867 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:35.867 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:35.867 -07 000000444 INF: FPGA: Recv YRDPOS 136271
17-03-18 01:55:35.877 -07 000000585 INF: FPGA: Xmit ZDACW 38369\n [Z Motor]
17-03-18 01:55:35.877 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 01:55:35.877 -07 000000569 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:35.877 -07 000000569 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:55:35.877 -07 000000569 INF: Y Motor: Moving 1350 steps-29
17-03-18 01:55:35.877 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 01:55:35.887 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:55:35.887 -07 000000585 INF: FPGA: 'ZDACW 38369' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 01:55:35.897 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:55:35.907 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:55:35.907 -07 000000611 INF: FPGA: Recv ZDACR 38369
17-03-18 01:55:35.917 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:55:35.917 -07 000000585 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 01:55:36.087 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:55:36.087 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:55:36.177 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:55:36.177 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:55:36.177 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:36.177 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:55:36.177 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:55:36.177 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:36.177 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:36.177 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:36.177 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-18 01:55:36.187 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 01:55:36.267 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 01:55:36.267 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-18 01:55:36.317 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:36.317 -07 000000462 INF: FPGA: Recv YRDPOS 137977
17-03-18 01:55:36.327 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:36.327 -07 000000569 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:36.327 -07 000000569 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 01:55:36.327 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 01:55:36.677 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:55:36.677 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:55:37.276 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:37.276 -07 000000462 INF: FPGA: Recv YRDPOS 137977
17-03-18 01:55:37.286 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:55:37.286 -07 000000569 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:37.306 -07 000000569 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:55:37.306 -07 000000569 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:55:37.306 -07 000000569 INF: Y Motor: Moved to 67.3716 after 1455 ms (table move)
17-03-18 01:55:37.316 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175642 mm (DAC = 38369)
17-03-18 01:55:37.336 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:37.336 -07 000000611 INF: FPGA: Recv ZSGSRD 36635
17-03-18 01:55:37.346 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:55:37.346 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:37.346 -07 000000626 INF: FPGA: Recv ZSGSRD 36633
17-03-18 01:55:37.356 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:37.356 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:37.356 -07 000000585 INF: FPGA: Recv ZSGSRD 36634
17-03-18 01:55:37.366 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:37.366 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:37.366 -07 000000462 INF: FPGA: Recv ZSGSRD 36628
17-03-18 01:55:37.376 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:37.376 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:37.376 -07 000000611 INF: FPGA: Recv ZSGSRD 36628
17-03-18 01:55:37.386 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:37.386 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:37.386 -07 000000502 INF: FPGA: Recv ZSGSRD 36629
17-03-18 01:55:37.396 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:37.396 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:37.396 -07 000000611 INF: FPGA: Recv ZSGSRD 36636
17-03-18 01:55:37.406 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:37.406 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:37.406 -07 000000626 INF: FPGA: Recv ZSGSRD 36638
17-03-18 01:55:37.416 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:37.416 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:37.416 -07 000000569 INF: FPGA: Recv ZSGSRD 36628
17-03-18 01:55:37.426 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:37.426 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:37.426 -07 000000502 INF: FPGA: Recv ZSGSRD 36632
17-03-18 01:55:37.436 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:37.436 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:55:37.436 -07 000000611 INF: FPGA: Recv ZPIEZORD 32788
17-03-18 01:55:37.446 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:37.446 -07 000000629 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.855 V. Piezo Error = -8.5 V.
17-03-18 01:55:37.446 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.6 um, Read 10 ADC samples: Avg = 36632 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36632 (-174.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36628 (-174.7 uncal um), Max = 36638 (-174.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:55:37.446 -07 000000629 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36632, posNoise = 6, negNoise = 4
17-03-18 01:55:37.446 -07 000000629 INF: Z Motor: After move to -0.175642, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:55:37.446 -07 000000629 INF: Z Motor: Settle wait time = 1458 ms, measure time = 128 ms (allowed 150 ms), total time = 1586 ms
17-03-18 01:55:37.446 -07 000000629 INF: Z Motor: Waiting extra 22 ms after reading position to reach expected total of 150 ms
17-03-18 01:55:37.476 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 01:55:37.476 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:55:37.476 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:55:37.476 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:55:37.476 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:55:37.476 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:55:37.476 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:55:37.476 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:55:37.486 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:55:37.486 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:55:37.486 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:55:37.486 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:55:37.496 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:55:37.496 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 01:55:37.496 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:55:37.546 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:55:37.846 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:55:37.846 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:55:37.846 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:55:37.846 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 01:55:37.886 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:55:37.886 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 01:55:37.886 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 01:55:37.976 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 01:55:37.976 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:37.976 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:55:37.976 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 01:55:37.986 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:55:37.986 -07 000000569 INF: Autofocus start
17-03-18 01:55:37.986 -07 000000569 INF: MeasureProfile start
17-03-18 01:55:37.986 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:55:37.996 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:55:37.996 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:55:37.996 -07 000000569 INF: MeasureProfile done
17-03-18 01:55:37.996 -07 000000569 INF: X=0  Z correction [um]=-0.0713522
17-03-18 01:55:37.996 -07 000000569 INF: Autofocus finished
17-03-18 01:55:38.196 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:55:38.196 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:55:38.196 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.175655091188122. ----------
17-03-18 01:55:38.196 -07 000000610 INF: Cycle	93	Tile	10	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:55:38.206 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36866, sync = True, waitForSettling = True)
17-03-18 01:55:38.206 -07 000000610 INF: Z Motor: Moving to -0.168762 mm, started at -0.175655 mm, distance = 6.89 um
17-03-18 01:55:38.206 -07 000000610 INF: FPGA: Xmit ZDACW 36866\n [Z Motor]
17-03-18 01:55:38.206 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 01:55:38.216 -07 000000610 INF: FPGA: 'ZDACW 36866' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:55:38.216 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:55:38.216 -07 000000611 INF: FPGA: Recv ZDACR 36866
17-03-18 01:55:38.226 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:38.226 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:55:38.375 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:38.375 -07 000000569 INF: FPGA: Recv ZSGSRD 35561
17-03-18 01:55:38.385 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:38.385 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:38.385 -07 000000611 INF: FPGA: Recv ZSGSRD 35559
17-03-18 01:55:38.395 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:38.395 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:38.395 -07 000000569 INF: FPGA: Recv ZSGSRD 35560
17-03-18 01:55:38.405 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:38.405 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:38.405 -07 000000611 INF: FPGA: Recv ZSGSRD 35560
17-03-18 01:55:38.415 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:38.415 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:38.415 -07 000000462 INF: FPGA: Recv ZSGSRD 35561
17-03-18 01:55:38.425 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:38.425 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:38.425 -07 000000569 INF: FPGA: Recv ZSGSRD 35563
17-03-18 01:55:38.435 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:38.435 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:38.435 -07 000000462 INF: FPGA: Recv ZSGSRD 35560
17-03-18 01:55:38.445 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:38.445 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:38.445 -07 000000629 INF: FPGA: Recv ZSGSRD 35560
17-03-18 01:55:38.455 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:38.455 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:38.455 -07 000000502 INF: FPGA: Recv ZSGSRD 35560
17-03-18 01:55:38.465 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:38.465 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:38.465 -07 000000462 INF: FPGA: Recv ZSGSRD 35555
17-03-18 01:55:38.475 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:38.475 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:55:38.475 -07 000000502 INF: FPGA: Recv ZPIEZORD 31386
17-03-18 01:55:38.485 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:38.485 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.625 V. Piezo Error = -9.2 V.
17-03-18 01:55:38.485 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35560 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35560 (-167.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35555 (-167.9 uncal um), Max = 35563 (-167.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:55:38.485 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35560, posNoise = 3, negNoise = 5
17-03-18 01:55:38.485 -07 000000610 INF: Z Motor: After move to -0.168762, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:55:38.485 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:55:38.485 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:55:38.485 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:55:38.485 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:55:38.485 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:55:38.485 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:55:38.485 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:55:38.485 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:55:38.485 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:55:38.485 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:55:38.485 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:55:38.485 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:55:38.485 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:55:38.495 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:55:38.495 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:55:38.495 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:55:38.495 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:55:38.495 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:55:38.495 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:55:38.505 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:55:38.505 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:55:38.505 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37043 150\n [Camera]
17-03-18 01:55:38.705 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:55:38.835 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 3.999021,
17-03-18 01:55:39.095 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:55:39.095 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:55:39.095 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:55:39.095 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:55:39.095 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:55:39.095 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:55:39.095 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:55:39.095 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:55:39.095 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:55:39.095 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:55:39.285 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37043 777
17-03-18 01:55:39.435 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:55:39.475 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 01:55:39.475 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 01:55:39.475 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:39.475 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 01:55:39.475 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 01:55:39.475 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:39.475 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:39.475 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 01:55:39.475 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:39.485 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 01:55:39.625 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:55:39.625 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:55:39.635 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:55:39.735 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:55:39.735 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:55:39.745 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:55:39.745 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:55:39.745 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:55:39.745 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:55:39.745 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:55:39.814 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 01:55:39.814 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:55:39.814 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37043 150' command took 2 ms to send, 1308 ms to get response, and 1315 ms overall
17-03-18 01:55:39.824 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:55:39.824 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.168768335772155. ------
17-03-18 01:55:39.824 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:55:39.824 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17502 mm
17-03-18 01:55:39.824 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:55:39.824 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 01:55:39.824 -07 000000461 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 01:55:39.824 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38233, sync = True, waitForSettling = False)
17-03-18 01:55:39.824 -07 000000462 INF: Z Motor: Moving to -0.175019 mm, started at -0.168768 mm, distance = -6.25 um
17-03-18 01:55:39.824 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:55:39.834 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:55:39.834 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:39.834 -07 000000629 INF: FPGA: Recv YRDPOS 137977
17-03-18 01:55:39.844 -07 000000462 INF: FPGA: Xmit ZDACW 38233\n [Z Motor]
17-03-18 01:55:39.844 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:55:39.844 -07 000000461 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:39.844 -07 000000461 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:55:39.844 -07 000000461 INF: Y Motor: Moving 1346 steps-23
17-03-18 01:55:39.844 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:55:39.854 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:55:39.854 -07 000000462 INF: FPGA: 'ZDACW 38233' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 01:55:39.864 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:55:39.874 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:55:39.874 -07 000000611 INF: FPGA: Recv ZDACR 38233
17-03-18 01:55:39.884 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:55:39.884 -07 000000462 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 01:55:40.054 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:55:40.054 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:55:40.144 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:55:40.144 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:55:40.144 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:40.144 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:55:40.144 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:55:40.144 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:40.154 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:40.154 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:40.154 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-18 01:55:40.154 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 01:55:40.234 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 01:55:40.234 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 01:55:40.284 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:40.284 -07 000000608 INF: FPGA: Recv YRDPOS 139683
17-03-18 01:55:40.294 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:55:40.294 -07 000000461 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:40.294 -07 000000461 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 01:55:40.294 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.841 mm, average velocity = 2.129 mm/sec
17-03-18 01:55:41.244 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:41.244 -07 000000611 INF: FPGA: Recv YRDPOS 139683
17-03-18 01:55:41.254 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:55:41.254 -07 000000461 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:41.273 -07 000000461 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:55:41.273 -07 000000461 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:55:41.273 -07 000000461 INF: Y Motor: Moved to 68.2046 after 1448 ms (table move)
17-03-18 01:55:41.283 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175019 mm (DAC = 38233)
17-03-18 01:55:41.283 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:41.283 -07 000000606 INF: FPGA: Recv ZSGSRD 36536
17-03-18 01:55:41.293 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:41.293 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:41.293 -07 000000608 INF: FPGA: Recv ZSGSRD 36536
17-03-18 01:55:41.303 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:41.303 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:41.303 -07 000000467 INF: FPGA: Recv ZSGSRD 36538
17-03-18 01:55:41.313 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:41.313 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:41.313 -07 000000461 INF: FPGA: Recv ZSGSRD 36536
17-03-18 01:55:41.323 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:41.323 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:41.323 -07 000000569 INF: FPGA: Recv ZSGSRD 36535
17-03-18 01:55:41.333 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:41.333 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:41.333 -07 000000438 INF: FPGA: Recv ZSGSRD 36537
17-03-18 01:55:41.343 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:41.343 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:41.343 -07 000000461 INF: FPGA: Recv ZSGSRD 36533
17-03-18 01:55:41.353 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:41.353 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:41.353 -07 000000585 INF: FPGA: Recv ZSGSRD 36535
17-03-18 01:55:41.363 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:41.363 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:41.363 -07 000000611 INF: FPGA: Recv ZSGSRD 36537
17-03-18 01:55:41.373 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:41.373 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:41.373 -07 000000629 INF: FPGA: Recv ZSGSRD 36533
17-03-18 01:55:41.383 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:41.383 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:55:41.383 -07 000000569 INF: FPGA: Recv ZPIEZORD 32686
17-03-18 01:55:41.393 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:41.393 -07 000000502 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.834 V. Piezo Error = -8.5 V.
17-03-18 01:55:41.393 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36536 (-174.2 uncal um), Error = 0.9 uncal um, Median = 36536 (-174.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 36533 (-174.1 uncal um), Max = 36538 (-174.2 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:55:41.393 -07 000000502 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36536, posNoise = 2, negNoise = 3
17-03-18 01:55:41.393 -07 000000502 INF: Z Motor: After move to -0.175019, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:55:41.393 -07 000000502 INF: Z Motor: Settle wait time = 1452 ms, measure time = 110 ms (allowed 150 ms), total time = 1562 ms
17-03-18 01:55:41.393 -07 000000502 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:55:41.433 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-18 01:55:41.433 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:55:41.433 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:55:41.433 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:55:41.433 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:55:41.433 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:55:41.433 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:55:41.433 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:55:41.433 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:55:41.433 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:55:41.443 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:55:41.443 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:55:41.443 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 01:55:41.443 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 01:55:41.453 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:55:41.493 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:55:41.673 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:55:41.673 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:55:41.793 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:55:41.793 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:55:41.793 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:55:41.793 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 01:55:41.833 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:55:41.833 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 01:55:41.833 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 01:55:41.913 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:55:41.913 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:41.913 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:55:41.913 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:55:41.933 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:55:41.933 -07 000000592 INF: Autofocus start
17-03-18 01:55:41.933 -07 000000592 INF: MeasureProfile start
17-03-18 01:55:41.933 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:55:41.943 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:55:41.943 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:55:41.953 -07 000000592 INF: MeasureProfile done
17-03-18 01:55:41.953 -07 000000592 INF: X=48  Z correction [um]=0.1739867
17-03-18 01:55:41.953 -07 000000592 INF: Autofocus finished
17-03-18 01:55:42.143 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:55:42.143 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:55:42.143 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.175038366822513. ----------
17-03-18 01:55:42.143 -07 000000610 INF: Cycle	93	Tile	11	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:55:42.153 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36784, sync = True, waitForSettling = True)
17-03-18 01:55:42.153 -07 000000610 INF: Z Motor: Moving to -0.168386 mm, started at -0.175038 mm, distance = 6.65 um
17-03-18 01:55:42.153 -07 000000610 INF: FPGA: Xmit ZDACW 36784\n [Z Motor]
17-03-18 01:55:42.153 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 01:55:42.163 -07 000000610 INF: FPGA: 'ZDACW 36784' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:55:42.163 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:55:42.163 -07 000000461 INF: FPGA: Recv ZDACR 36784
17-03-18 01:55:42.173 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:42.173 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:55:42.323 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:42.323 -07 000000611 INF: FPGA: Recv ZSGSRD 35501
17-03-18 01:55:42.333 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:55:42.343 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:42.343 -07 000000462 INF: FPGA: Recv ZSGSRD 35502
17-03-18 01:55:42.353 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:55:42.353 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:42.353 -07 000000461 INF: FPGA: Recv ZSGSRD 35497
17-03-18 01:55:42.363 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:42.363 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:42.363 -07 000000461 INF: FPGA: Recv ZSGSRD 35508
17-03-18 01:55:42.373 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:42.373 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:42.373 -07 000000462 INF: FPGA: Recv ZSGSRD 35504
17-03-18 01:55:42.383 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:42.383 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:42.383 -07 000000462 INF: FPGA: Recv ZSGSRD 35500
17-03-18 01:55:42.393 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:42.393 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:42.393 -07 000000461 INF: FPGA: Recv ZSGSRD 35500
17-03-18 01:55:42.403 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:42.403 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:42.403 -07 000000611 INF: FPGA: Recv ZSGSRD 35503
17-03-18 01:55:42.413 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:42.413 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:42.413 -07 000000461 INF: FPGA: Recv ZSGSRD 35505
17-03-18 01:55:42.423 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:42.423 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:42.423 -07 000000585 INF: FPGA: Recv ZSGSRD 35498
17-03-18 01:55:42.433 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:42.433 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:55:42.433 -07 000000461 INF: FPGA: Recv ZPIEZORD 31290
17-03-18 01:55:42.443 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:42.443 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.613 V. Piezo Error = -9.3 V.
17-03-18 01:55:42.443 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35502 (-167.5 uncal um), Error = 0.9 uncal um, Median = 35502 (-167.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35497 (-167.5 uncal um), Max = 35508 (-167.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:55:42.443 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35502, posNoise = 6, negNoise = 5
17-03-18 01:55:42.443 -07 000000610 INF: Z Motor: After move to -0.168386, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:55:42.443 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 01:55:42.443 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:55:42.443 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:55:42.443 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:55:42.443 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:55:42.443 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:55:42.443 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:55:42.443 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:55:42.443 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:55:42.443 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:55:42.443 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:55:42.443 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:55:42.443 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:55:42.443 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:55:42.453 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:55:42.453 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:55:42.453 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:55:42.463 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 01:55:42.463 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 01:55:42.463 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 01:55:42.463 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 01:55:42.463 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36961 150\n [Camera]
17-03-18 01:55:42.663 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:55:43.052 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:55:43.052 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:55:43.062 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:55:43.062 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:55:43.062 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:55:43.062 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:55:43.062 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:55:43.062 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:55:43.062 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:55:43.062 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:55:43.252 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36961 777
17-03-18 01:55:43.402 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:55:43.442 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 01:55:43.442 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 01:55:43.442 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:43.442 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:55:43.452 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 01:55:43.452 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 01:55:43.452 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:43.452 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:55:43.452 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:55:43.452 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 01:55:43.592 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:55:43.592 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:55:43.592 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:55:43.702 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:55:43.702 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:55:43.702 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:55:43.702 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:55:43.702 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:55:43.702 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:55:43.702 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:55:43.782 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:55:43.782 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:55:43.782 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36961 150' command took 2 ms to send, 1312 ms to get response, and 1315 ms overall
17-03-18 01:55:43.782 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:55:43.782 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.168395731467932. ------
17-03-18 01:55:43.782 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:55:43.782 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17491 mm
17-03-18 01:55:43.782 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:55:43.782 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 01:55:43.782 -07 000000461 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 01:55:43.792 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:43.792 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:55:43.792 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:55:43.792 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 38208, sync = True, waitForSettling = False)
17-03-18 01:55:43.792 -07 000000611 INF: Z Motor: Moving to -0.174905 mm, started at -0.168396 mm, distance = -6.51 um
17-03-18 01:55:43.792 -07 000000626 INF: FPGA: Recv YRDPOS 139683
17-03-18 01:55:43.802 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:43.802 -07 000000461 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:43.802 -07 000000461 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:55:43.802 -07 000000461 INF: Y Motor: Moving 1341 steps-16
17-03-18 01:55:43.802 -07 000000611 INF: FPGA: Xmit ZDACW 38208\n [Z Motor]
17-03-18 01:55:43.802 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 01:55:43.812 -07 000000611 INF: FPGA: 'ZDACW 38208' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:55:43.812 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:55:43.822 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:55:43.832 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:55:43.832 -07 000000606 INF: FPGA: Recv ZDACR 38208
17-03-18 01:55:43.842 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 01:55:43.842 -07 000000611 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 01:55:44.012 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:55:44.012 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 225 ms overall
17-03-18 01:55:44.102 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:55:44.102 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:55:44.102 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:44.112 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:55:44.112 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:55:44.112 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:44.112 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:44.112 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:44.112 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 01:55:44.122 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 01:55:44.192 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.023489,
17-03-18 01:55:44.192 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 01:55:44.192 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:55:44.242 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:44.242 -07 000000585 INF: FPGA: Recv YRDPOS 141366
17-03-18 01:55:44.251 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:55:44.251 -07 000000461 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:44.251 -07 000000461 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 01:55:44.251 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.106 mm/sec
17-03-18 01:55:45.201 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:45.201 -07 000000455 INF: FPGA: Recv YRDPOS 141367
17-03-18 01:55:45.211 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:55:45.211 -07 000000461 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:45.231 -07 000000461 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:55:45.231 -07 000000461 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:55:45.231 -07 000000461 INF: Y Motor: Moved to 69.0269 after 1447 ms (table move)
17-03-18 01:55:45.241 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174905 mm (DAC = 38208)
17-03-18 01:55:45.241 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:45.241 -07 000000461 INF: FPGA: Recv ZSGSRD 36524
17-03-18 01:55:45.251 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:45.251 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:45.251 -07 000000569 INF: FPGA: Recv ZSGSRD 36520
17-03-18 01:55:45.261 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:45.261 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:45.261 -07 000000608 INF: FPGA: Recv ZSGSRD 36522
17-03-18 01:55:45.271 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:45.271 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:45.271 -07 000000608 INF: FPGA: Recv ZSGSRD 36514
17-03-18 01:55:45.281 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:45.281 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:45.281 -07 000000608 INF: FPGA: Recv ZSGSRD 36516
17-03-18 01:55:45.291 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:45.291 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:45.291 -07 000000502 INF: FPGA: Recv ZSGSRD 36513
17-03-18 01:55:45.301 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:45.301 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:45.301 -07 000000502 INF: FPGA: Recv ZSGSRD 36514
17-03-18 01:55:45.311 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:45.311 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:45.311 -07 000000502 INF: FPGA: Recv ZSGSRD 36521
17-03-18 01:55:45.321 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:45.321 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:45.321 -07 000000502 INF: FPGA: Recv ZSGSRD 36523
17-03-18 01:55:45.331 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:45.331 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:45.331 -07 000000502 INF: FPGA: Recv ZSGSRD 36517
17-03-18 01:55:45.341 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:45.341 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:55:45.341 -07 000000502 INF: FPGA: Recv ZPIEZORD 32639
17-03-18 01:55:45.351 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:45.351 -07 000000462 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.830 V. Piezo Error = -8.6 V.
17-03-18 01:55:45.351 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36518 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36518 (-174.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36513 (-174.0 uncal um), Max = 36524 (-174.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:55:45.351 -07 000000462 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36518, posNoise = 6, negNoise = 5
17-03-18 01:55:45.351 -07 000000462 INF: Z Motor: After move to -0.174905, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:55:45.351 -07 000000462 INF: Z Motor: Settle wait time = 1449 ms, measure time = 110 ms (allowed 150 ms), total time = 1559 ms
17-03-18 01:55:45.351 -07 000000462 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:55:45.391 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-18 01:55:45.391 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:55:45.391 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:55:45.391 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:55:45.391 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:55:45.391 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:55:45.391 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:55:45.391 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:55:45.391 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:55:45.391 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:55:45.401 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:55:45.401 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:55:45.411 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:55:45.411 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:55:45.411 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:55:45.461 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:55:45.760 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:55:45.760 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:55:45.760 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:55:45.760 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 01:55:45.790 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:55:45.800 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 01:55:45.800 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 386 ms overall
17-03-18 01:55:45.870 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:55:45.870 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:45.870 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:55:45.870 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 01:55:45.900 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:55:45.900 -07 000000606 INF: Autofocus start
17-03-18 01:55:45.900 -07 000000606 INF: MeasureProfile start
17-03-18 01:55:45.910 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:55:45.910 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:55:45.910 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:55:45.920 -07 000000606 INF: MeasureProfile done
17-03-18 01:55:45.920 -07 000000606 INF: X=48  Z correction [um]=0.1739867
17-03-18 01:55:45.920 -07 000000606 INF: Autofocus finished
17-03-18 01:55:46.110 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:55:46.110 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:55:46.110 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.174922731003962. ----------
17-03-18 01:55:46.120 -07 000000610 INF: Cycle	93	Tile	12	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:55:46.120 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36759, sync = True, waitForSettling = True)
17-03-18 01:55:46.120 -07 000000610 INF: Z Motor: Moving to -0.168272 mm, started at -0.174923 mm, distance = 6.65 um
17-03-18 01:55:46.120 -07 000000610 INF: FPGA: Xmit ZDACW 36759\n [Z Motor]
17-03-18 01:55:46.120 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 01:55:46.130 -07 000000610 INF: FPGA: 'ZDACW 36759' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:55:46.130 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:55:46.130 -07 000000606 INF: FPGA: Recv ZDACR 36759
17-03-18 01:55:46.140 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:46.140 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:55:46.290 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:46.290 -07 000000608 INF: FPGA: Recv ZSGSRD 35486
17-03-18 01:55:46.300 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:55:46.300 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:46.300 -07 000000461 INF: FPGA: Recv ZSGSRD 35484
17-03-18 01:55:46.310 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:46.310 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:46.310 -07 000000569 INF: FPGA: Recv ZSGSRD 35481
17-03-18 01:55:46.320 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:46.320 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:46.320 -07 000000569 INF: FPGA: Recv ZSGSRD 35488
17-03-18 01:55:46.330 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:46.330 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:46.330 -07 000000585 INF: FPGA: Recv ZSGSRD 35480
17-03-18 01:55:46.340 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:46.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:46.340 -07 000000569 INF: FPGA: Recv ZSGSRD 35488
17-03-18 01:55:46.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:46.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:46.350 -07 000000585 INF: FPGA: Recv ZSGSRD 35487
17-03-18 01:55:46.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:46.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:46.360 -07 000000608 INF: FPGA: Recv ZSGSRD 35482
17-03-18 01:55:46.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:46.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:46.370 -07 000000608 INF: FPGA: Recv ZSGSRD 35492
17-03-18 01:55:46.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:46.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:46.380 -07 000000585 INF: FPGA: Recv ZSGSRD 35483
17-03-18 01:55:46.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:46.390 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:55:46.390 -07 000000569 INF: FPGA: Recv ZPIEZORD 31272
17-03-18 01:55:46.400 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:46.400 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.609 V. Piezo Error = -9.3 V.
17-03-18 01:55:46.400 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35485 (-167.4 uncal um), Error = 0.9 uncal um, Median = 35485 (-167.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35480 (-167.4 uncal um), Max = 35492 (-167.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:55:46.400 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35485, posNoise = 7, negNoise = 5
17-03-18 01:55:46.400 -07 000000610 INF: Z Motor: After move to -0.168272, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:55:46.400 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:55:46.400 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:55:46.400 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:55:46.400 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:55:46.400 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:55:46.400 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:55:46.400 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:55:46.400 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:55:46.400 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:55:46.400 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:55:46.400 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:55:46.400 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:55:46.400 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:55:46.410 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:55:46.410 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:55:46.410 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:55:46.410 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:55:46.410 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:55:46.410 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:55:46.410 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:55:46.420 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:55:46.420 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36935 150\n [Camera]
17-03-18 01:55:46.620 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:55:46.670 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:55:46.670 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:55:47.010 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:55:47.010 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:55:47.010 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:55:47.010 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:55:47.010 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:55:47.010 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:55:47.010 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:55:47.020 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:55:47.020 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:55:47.020 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:55:47.210 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36935 780
17-03-18 01:55:47.349 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:55:47.409 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:55:47.409 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:55:47.409 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:47.409 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:55:47.409 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:55:47.409 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:47.409 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:55:47.409 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:55:47.419 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:55:47.419 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 01:55:47.539 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:55:47.539 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:55:47.539 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:55:47.649 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:55:47.649 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:55:47.649 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:55:47.659 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:55:47.659 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:55:47.659 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:55:47.659 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:55:47.729 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 01:55:47.729 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:55:47.729 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36935 150' command took 2 ms to send, 1309 ms to get response, and 1316 ms overall
17-03-18 01:55:47.739 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:55:47.739 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.168286519861523. ------
17-03-18 01:55:47.739 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:55:47.739 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17478 mm
17-03-18 01:55:47.739 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:55:47.739 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 01:55:47.739 -07 000000629 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-18 01:55:47.739 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38180, sync = True, waitForSettling = False)
17-03-18 01:55:47.739 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:55:47.739 -07 000000608 INF: Z Motor: Moving to -0.174777 mm, started at -0.168287 mm, distance = -6.49 um
17-03-18 01:55:47.749 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:55:47.749 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:47.749 -07 000000438 INF: FPGA: Recv YRDPOS 141367
17-03-18 01:55:47.759 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:55:47.759 -07 000000629 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:47.759 -07 000000629 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:55:47.759 -07 000000629 INF: Y Motor: Moving 1353 steps-33
17-03-18 01:55:47.759 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:55:47.769 -07 000000608 INF: FPGA: Xmit ZDACW 38180\n [Z Motor]
17-03-18 01:55:47.769 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 01:55:47.779 -07 000000608 INF: FPGA: 'ZDACW 38180' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 01:55:47.779 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:55:47.789 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:55:47.789 -07 000000592 INF: FPGA: Recv ZDACR 38180
17-03-18 01:55:47.799 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:55:47.799 -07 000000608 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 01:55:47.959 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:55:47.959 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 213 ms overall
17-03-18 01:55:48.059 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 01:55:48.059 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:55:48.059 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:48.059 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:55:48.059 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:55:48.059 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:48.069 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:48.069 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-18 01:55:48.069 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:48.079 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-18 01:55:48.149 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 01:55:48.149 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:55:48.199 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:48.199 -07 000000462 INF: FPGA: Recv YRDPOS 143078
17-03-18 01:55:48.209 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:55:48.209 -07 000000629 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:48.209 -07 000000629 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 01:55:48.209 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.130 mm/sec
17-03-18 01:55:49.158 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:49.158 -07 000000438 INF: FPGA: Recv YRDPOS 143079
17-03-18 01:55:49.168 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:55:49.168 -07 000000629 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:49.188 -07 000000629 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:55:49.188 -07 000000629 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:55:49.188 -07 000000629 INF: Y Motor: Moved to 69.8628 after 1448 ms (table move)
17-03-18 01:55:49.198 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174777 mm (DAC = 38180)
17-03-18 01:55:49.198 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:49.198 -07 000000611 INF: FPGA: Recv ZSGSRD 36497
17-03-18 01:55:49.208 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:49.208 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:49.208 -07 000000585 INF: FPGA: Recv ZSGSRD 36499
17-03-18 01:55:49.218 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:49.218 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:49.218 -07 000000561 INF: FPGA: Recv ZSGSRD 36500
17-03-18 01:55:49.228 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:49.238 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:49.238 -07 000000438 INF: FPGA: Recv ZSGSRD 36496
17-03-18 01:55:49.248 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:55:49.248 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:49.248 -07 000000444 INF: FPGA: Recv ZSGSRD 36489
17-03-18 01:55:49.258 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:49.258 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:49.258 -07 000000455 INF: FPGA: Recv ZSGSRD 36497
17-03-18 01:55:49.268 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:49.268 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:49.268 -07 000000569 INF: FPGA: Recv ZSGSRD 36496
17-03-18 01:55:49.278 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:49.278 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:49.278 -07 000000585 INF: FPGA: Recv ZSGSRD 36502
17-03-18 01:55:49.288 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:49.288 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:49.288 -07 000000444 INF: FPGA: Recv ZSGSRD 36503
17-03-18 01:55:49.298 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:49.298 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:49.298 -07 000000592 INF: FPGA: Recv ZSGSRD 36497
17-03-18 01:55:49.308 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:49.308 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:55:49.308 -07 000000502 INF: FPGA: Recv ZPIEZORD 32621
17-03-18 01:55:49.318 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:49.318 -07 000000461 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.826 V. Piezo Error = -8.6 V.
17-03-18 01:55:49.318 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36498 (-173.9 uncal um), Error = 0.9 uncal um, Median = 36497 (-173.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36489 (-173.9 uncal um), Max = 36503 (-173.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:55:49.318 -07 000000461 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36498, posNoise = 5, negNoise = 9
17-03-18 01:55:49.318 -07 000000461 INF: Z Motor: After move to -0.174777, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:55:49.318 -07 000000461 INF: Z Motor: Settle wait time = 1451 ms, measure time = 120 ms (allowed 150 ms), total time = 1571 ms
17-03-18 01:55:49.318 -07 000000461 INF: Z Motor: Waiting extra 30 ms after reading position to reach expected total of 150 ms
17-03-18 01:55:49.348 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-18 01:55:49.348 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:55:49.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:55:49.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:55:49.348 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:55:49.348 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:55:49.348 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:55:49.348 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:55:49.348 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:55:49.348 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:55:49.358 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:55:49.358 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:55:49.368 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 01:55:49.368 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 01:55:49.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:55:49.408 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:55:49.548 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.028963,
17-03-18 01:55:49.708 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:55:49.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:55:49.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:55:49.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 01:55:49.748 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:55:49.748 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 01:55:49.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 01:55:49.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 01:55:49.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:49.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:55:49.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 01:55:49.848 -07 000000462 INF: Autofocus start
17-03-18 01:55:49.848 -07 000000462 INF: MeasureProfile start
17-03-18 01:55:49.848 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:55:49.848 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:55:49.858 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:55:49.858 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:55:49.858 -07 000000462 INF: MeasureProfile done
17-03-18 01:55:49.858 -07 000000462 INF: X=0  Z correction [um]=-0.0713522
17-03-18 01:55:49.858 -07 000000462 INF: Autofocus finished
17-03-18 01:55:50.058 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:55:50.058 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:55:50.058 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.174794246761126. ----------
17-03-18 01:55:50.058 -07 000000610 INF: Cycle	93	Tile	13	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:55:50.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36677, sync = True, waitForSettling = True)
17-03-18 01:55:50.068 -07 000000610 INF: Z Motor: Moving to -0.167897 mm, started at -0.174794 mm, distance = 6.90 um
17-03-18 01:55:50.068 -07 000000610 INF: FPGA: Xmit ZDACW 36677\n [Z Motor]
17-03-18 01:55:50.068 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:55:50.078 -07 000000610 INF: FPGA: 'ZDACW 36677' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:50.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:55:50.078 -07 000000626 INF: FPGA: Recv ZDACR 36677
17-03-18 01:55:50.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:50.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:55:50.237 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:50.237 -07 000000461 INF: FPGA: Recv ZSGSRD 35431
17-03-18 01:55:50.247 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:50.247 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:50.247 -07 000000611 INF: FPGA: Recv ZSGSRD 35426
17-03-18 01:55:50.257 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:50.257 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:50.257 -07 000000606 INF: FPGA: Recv ZSGSRD 35427
17-03-18 01:55:50.267 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:50.267 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:50.267 -07 000000502 INF: FPGA: Recv ZSGSRD 35428
17-03-18 01:55:50.277 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:50.277 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:50.277 -07 000000467 INF: FPGA: Recv ZSGSRD 35422
17-03-18 01:55:50.287 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:50.287 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:50.287 -07 000000569 INF: FPGA: Recv ZSGSRD 35427
17-03-18 01:55:50.297 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:50.297 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:50.297 -07 000000502 INF: FPGA: Recv ZSGSRD 35423
17-03-18 01:55:50.307 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:50.307 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:50.307 -07 000000608 INF: FPGA: Recv ZSGSRD 35426
17-03-18 01:55:50.317 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:50.317 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:50.317 -07 000000502 INF: FPGA: Recv ZSGSRD 35426
17-03-18 01:55:50.327 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:50.327 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:50.327 -07 000000569 INF: FPGA: Recv ZSGSRD 35423
17-03-18 01:55:50.337 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:50.337 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:55:50.337 -07 000000502 INF: FPGA: Recv ZPIEZORD 31244
17-03-18 01:55:50.347 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:50.347 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.597 V. Piezo Error = -9.2 V.
17-03-18 01:55:50.347 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35426 (-167.0 uncal um), Error = 0.9 uncal um, Median = 35426 (-167.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35422 (-167.0 uncal um), Max = 35431 (-167.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:55:50.347 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35426, posNoise = 5, negNoise = 4
17-03-18 01:55:50.347 -07 000000610 INF: Z Motor: After move to -0.167897, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:55:50.347 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:55:50.347 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:55:50.347 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:55:50.347 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:55:50.347 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:55:50.347 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:55:50.347 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:55:50.347 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:55:50.347 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:55:50.347 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:55:50.347 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:55:50.347 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:55:50.347 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:55:50.347 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:55:50.347 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:55:50.347 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:55:50.347 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:55:50.357 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:55:50.357 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 01:55:50.357 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:55:50.357 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:55:50.367 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36854 150\n [Camera]
17-03-18 01:55:50.567 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:55:50.957 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:55:50.957 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:55:50.957 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:55:50.957 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:55:50.957 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:55:50.957 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:55:50.957 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:55:50.957 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:55:50.957 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:55:50.957 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:55:51.147 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36854 777
17-03-18 01:55:51.297 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:55:51.357 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:55:51.357 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:55:51.357 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:51.357 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:55:51.357 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:55:51.357 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:55:51.357 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:55:51.357 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:51.357 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:55:51.367 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 01:55:51.487 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:55:51.487 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:55:51.487 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:55:51.597 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:55:51.597 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:55:51.597 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:55:51.607 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:55:51.607 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:55:51.607 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:55:51.607 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:55:51.667 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:55:51.667 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:55:51.677 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:55:51.677 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:55:51.677 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36854 150' command took 2 ms to send, 1306 ms to get response, and 1314 ms overall
17-03-18 01:55:51.677 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:55:51.677 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.167907491345159. ------
17-03-18 01:55:51.687 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:55:51.687 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17392 mm
17-03-18 01:55:51.687 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:55:52.006 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:55:52.006 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:55:52.006 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:52.006 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:55:52.006 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:55:52.006 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:52.006 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:52.006 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-18 01:55:52.006 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:52.016 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 01:55:52.016 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 01:55:52.016 -07 000000608 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 01:55:52.016 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:52.026 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:55:52.026 -07 000000502 INF: FPGA: Recv YRDPOS 143079
17-03-18 01:55:52.026 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 335 ms to get response, and 343 ms overall
17-03-18 01:55:52.026 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37993, sync = True, waitForSettling = False)
17-03-18 01:55:52.026 -07 000000502 INF: Z Motor: Moving to -0.173921 mm, started at -0.167907 mm, distance = -6.01 um
17-03-18 01:55:52.036 -07 000000608 INF: FPGA: 'YRDPOS' command took 2 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:55:52.036 -07 000000608 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:52.036 -07 000000608 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:55:52.036 -07 000000608 INF: Y Motor: Moving 1344 steps-21
17-03-18 01:55:52.036 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:55:52.046 -07 000000502 INF: FPGA: Xmit ZDACW 37993\n [Z Motor]
17-03-18 01:55:52.056 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:55:52.566 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 01:55:52.566 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:55:52.566 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 01:55:52.566 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 508 ms to get response, and 538 ms overall
17-03-18 01:55:52.566 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 528 ms to get response, and 542 ms overall
17-03-18 01:55:52.566 -07 000000502 INF: FPGA: 'ZDACW 37993' command took 0 ms to send, 513 ms to get response, and 537 ms overall
17-03-18 01:55:52.566 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:55:52.576 -07 000000585 INF: FPGA: Recv ZDACR 37993
17-03-18 01:55:52.586 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:55:52.586 -07 000000502 INF: Z Motor: MoveAbsStepped took 553 ms (did NOT wait for settling yet))
17-03-18 01:55:52.616 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:52.616 -07 000000438 INF: FPGA: Recv YRDPOS 144769
17-03-18 01:55:52.626 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:55:52.626 -07 000000608 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:52.626 -07 000000608 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 01:55:52.626 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 538 ms, distance = 0.840 mm, average velocity = 1.561 mm/sec
17-03-18 01:55:53.575 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:53.575 -07 000000438 INF: FPGA: Recv YRDPOS 144769
17-03-18 01:55:53.585 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:55:53.585 -07 000000608 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:53.605 -07 000000608 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:55:53.605 -07 000000608 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:55:53.605 -07 000000608 INF: Y Motor: Moved to 70.6880 after 1588 ms (table move)
17-03-18 01:55:53.615 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173921 mm (DAC = 37993)
17-03-18 01:55:53.615 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:53.615 -07 000000461 INF: FPGA: Recv ZSGSRD 36363
17-03-18 01:55:53.625 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:55:53.625 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:53.625 -07 000000585 INF: FPGA: Recv ZSGSRD 36361
17-03-18 01:55:53.635 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:53.635 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:53.635 -07 000000585 INF: FPGA: Recv ZSGSRD 36366
17-03-18 01:55:53.645 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:53.645 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:53.645 -07 000000462 INF: FPGA: Recv ZSGSRD 36363
17-03-18 01:55:53.655 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:53.655 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:53.655 -07 000000569 INF: FPGA: Recv ZSGSRD 36359
17-03-18 01:55:53.665 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:53.665 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:53.665 -07 000000606 INF: FPGA: Recv ZSGSRD 36366
17-03-18 01:55:53.675 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:53.675 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:53.675 -07 000000502 INF: FPGA: Recv ZSGSRD 36363
17-03-18 01:55:53.685 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:53.685 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:53.685 -07 000000462 INF: FPGA: Recv ZSGSRD 36357
17-03-18 01:55:53.695 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:53.695 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:53.695 -07 000000461 INF: FPGA: Recv ZSGSRD 36364
17-03-18 01:55:53.705 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:53.705 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:53.705 -07 000000585 INF: FPGA: Recv ZSGSRD 36364
17-03-18 01:55:53.715 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:53.715 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:55:53.715 -07 000000461 INF: FPGA: Recv ZPIEZORD 32515
17-03-18 01:55:53.725 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:53.725 -07 000000611 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.797 V. Piezo Error = -8.5 V.
17-03-18 01:55:53.725 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36363 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36363 (-173.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36357 (-173.0 uncal um), Max = 36366 (-173.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:55:53.725 -07 000000611 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36363, posNoise = 3, negNoise = 6
17-03-18 01:55:53.725 -07 000000611 INF: Z Motor: After move to -0.173921, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:55:53.725 -07 000000611 INF: Z Motor: Settle wait time = 1585 ms, measure time = 108 ms (allowed 150 ms), total time = 1693 ms
17-03-18 01:55:53.725 -07 000000611 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:55:53.775 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2087 ms
17-03-18 01:55:53.775 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:55:53.775 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:55:53.775 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:55:53.775 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:55:53.775 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:55:53.775 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:55:53.775 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:55:53.775 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:55:53.785 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:55:53.785 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:55:53.785 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:55:53.785 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:55:53.785 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 01:55:53.795 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:55:53.835 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:55:54.135 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:55:54.135 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:55:54.135 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:55:54.135 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 01:55:54.175 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:55:54.175 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 01:55:54.175 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 01:55:54.255 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 01:55:54.255 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:54.255 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:55:54.255 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 01:55:54.275 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:55:54.275 -07 000000569 INF: Autofocus start
17-03-18 01:55:54.275 -07 000000569 INF: MeasureProfile start
17-03-18 01:55:54.275 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:55:54.285 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:55:54.285 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:55:54.285 -07 000000569 INF: MeasureProfile done
17-03-18 01:55:54.285 -07 000000569 INF: X=96  Z correction [um]=0.4193256
17-03-18 01:55:54.285 -07 000000569 INF: Autofocus finished
17-03-18 01:55:54.485 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:55:54.485 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:55:54.485 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.173926978121989. ----------
17-03-18 01:55:54.485 -07 000000610 INF: Cycle	93	Tile	14	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:55:54.495 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36598, sync = True, waitForSettling = True)
17-03-18 01:55:54.495 -07 000000610 INF: Z Motor: Moving to -0.167535 mm, started at -0.173927 mm, distance = 6.39 um
17-03-18 01:55:54.495 -07 000000610 INF: FPGA: Xmit ZDACW 36598\n [Z Motor]
17-03-18 01:55:54.495 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:55:54.505 -07 000000610 INF: FPGA: 'ZDACW 36598' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:55:54.505 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:55:54.505 -07 000000611 INF: FPGA: Recv ZDACR 36598
17-03-18 01:55:54.515 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:54.515 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:55:54.665 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:54.665 -07 000000502 INF: FPGA: Recv ZSGSRD 35372
17-03-18 01:55:54.675 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:55:54.675 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:54.675 -07 000000502 INF: FPGA: Recv ZSGSRD 35366
17-03-18 01:55:54.685 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:54.685 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:54.685 -07 000000611 INF: FPGA: Recv ZSGSRD 35371
17-03-18 01:55:54.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:54.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:54.694 -07 000000502 INF: FPGA: Recv ZSGSRD 35367
17-03-18 01:55:54.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:54.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:54.704 -07 000000438 INF: FPGA: Recv ZSGSRD 35371
17-03-18 01:55:54.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:54.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:54.714 -07 000000569 INF: FPGA: Recv ZSGSRD 35373
17-03-18 01:55:54.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:54.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:54.724 -07 000000438 INF: FPGA: Recv ZSGSRD 35366
17-03-18 01:55:54.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:54.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:54.734 -07 000000606 INF: FPGA: Recv ZSGSRD 35376
17-03-18 01:55:54.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:54.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:54.744 -07 000000438 INF: FPGA: Recv ZSGSRD 35361
17-03-18 01:55:54.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:54.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:54.754 -07 000000606 INF: FPGA: Recv ZSGSRD 35363
17-03-18 01:55:54.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:54.764 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:55:54.764 -07 000000611 INF: FPGA: Recv ZPIEZORD 31141
17-03-18 01:55:54.774 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:54.774 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.584 V. Piezo Error = -9.3 V.
17-03-18 01:55:54.774 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35369 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35369 (-166.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35361 (-166.6 uncal um), Max = 35376 (-166.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:55:54.774 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35369, posNoise = 7, negNoise = 8
17-03-18 01:55:54.774 -07 000000610 INF: Z Motor: After move to -0.167535, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:55:54.774 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:55:54.774 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:55:54.774 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:55:54.774 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:55:54.774 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:55:54.774 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:55:54.774 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:55:54.774 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:55:54.774 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:55:54.774 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:55:54.774 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:55:54.774 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:55:54.774 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:55:54.784 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:55:54.784 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:55:54.784 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:55:54.784 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:55:54.794 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:55:54.794 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:55:54.794 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:55:54.794 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:55:54.804 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36774 150\n [Camera]
17-03-18 01:55:54.904 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.004458,
17-03-18 01:55:55.004 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:55:55.394 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:55:55.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:55:55.394 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:55:55.394 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:55:55.394 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:55:55.394 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:55:55.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:55:55.394 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:55:55.394 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:55:55.394 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:55:55.584 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36774 777
17-03-18 01:55:55.734 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:55:55.774 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 01:55:55.774 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 01:55:55.774 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:55.784 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:55:55.784 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 01:55:55.784 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 01:55:55.784 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:55.784 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:55:55.784 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:55:55.784 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 01:55:55.924 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1116
17-03-18 01:55:55.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1116
17-03-18 01:55:55.924 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:55:56.034 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1116
17-03-18 01:55:56.034 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1116
17-03-18 01:55:56.034 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:55:56.044 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:55:56.044 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:55:56.044 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:55:56.044 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:55:56.114 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 01:55:56.114 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:55:56.114 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36774 150' command took 2 ms to send, 1305 ms to get response, and 1315 ms overall
17-03-18 01:55:56.114 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:55:56.114 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.167541311253078. ------
17-03-18 01:55:56.124 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:55:56.124 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17413 mm
17-03-18 01:55:56.124 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:55:56.443 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 01:55:56.443 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 01:55:56.443 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:56.443 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 01:55:56.443 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:55:56.443 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:56.453 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:56.453 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:55:56.453 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 526 ms.
17-03-18 01:55:56.453 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-18 01:55:56.463 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 01:55:56.463 -07 000000502 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 01:55:56.463 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:56.463 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:55:56.463 -07 000000585 INF: FPGA: Recv YRDPOS 144769
17-03-18 01:55:56.463 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 338 ms to get response, and 348 ms overall
17-03-18 01:55:56.463 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 38038, sync = True, waitForSettling = False)
17-03-18 01:55:56.463 -07 000000585 INF: Z Motor: Moving to -0.174127 mm, started at -0.167541 mm, distance = -6.59 um
17-03-18 01:55:56.473 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:55:56.473 -07 000000502 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:56.473 -07 000000502 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:55:56.473 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:55:56.473 -07 000000502 INF: Y Motor: Moving 1351 steps-30
17-03-18 01:55:56.483 -07 000000585 INF: FPGA: Xmit ZDACW 38038\n [Z Motor]
17-03-18 01:55:56.493 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:55:57.063 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 01:55:57.063 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:55:57.063 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:55:57.063 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 01:55:57.063 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 560 ms to get response, and 590 ms overall
17-03-18 01:55:57.063 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 580 ms to get response, and 592 ms overall
17-03-18 01:55:57.063 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:55:57.063 -07 000000585 INF: FPGA: 'ZDACW 38038' command took 0 ms to send, 570 ms to get response, and 591 ms overall
17-03-18 01:55:57.063 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:55:57.063 -07 000000611 INF: FPGA: Recv ZDACR 38038
17-03-18 01:55:57.073 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:55:57.073 -07 000000585 INF: Z Motor: MoveAbsStepped took 600 ms (did NOT wait for settling yet))
17-03-18 01:55:57.103 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:57.103 -07 000000444 INF: FPGA: Recv YRDPOS 146469
17-03-18 01:55:57.113 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:55:57.113 -07 000000502 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:57.113 -07 000000502 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 01:55:57.113 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 590 ms, distance = 0.845 mm, average velocity = 1.432 mm/sec
17-03-18 01:55:58.062 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:55:58.062 -07 000000444 INF: FPGA: Recv YRDPOS 146470
17-03-18 01:55:58.072 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:55:58.072 -07 000000502 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:55:58.092 -07 000000502 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:55:58.092 -07 000000502 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:55:58.092 -07 000000502 INF: Y Motor: Moved to 71.5186 after 1635 ms (table move)
17-03-18 01:55:58.102 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174127 mm (DAC = 38038)
17-03-18 01:55:58.102 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:58.102 -07 000000629 INF: FPGA: Recv ZSGSRD 36402
17-03-18 01:55:58.112 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:55:58.112 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:58.112 -07 000000585 INF: FPGA: Recv ZSGSRD 36396
17-03-18 01:55:58.122 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:58.122 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:58.122 -07 000000561 INF: FPGA: Recv ZSGSRD 36387
17-03-18 01:55:58.132 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:58.132 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:58.132 -07 000000444 INF: FPGA: Recv ZSGSRD 36390
17-03-18 01:55:58.142 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:58.142 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:58.142 -07 000000611 INF: FPGA: Recv ZSGSRD 36393
17-03-18 01:55:58.152 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:58.152 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:58.152 -07 000000561 INF: FPGA: Recv ZSGSRD 36399
17-03-18 01:55:58.162 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:58.162 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:58.162 -07 000000611 INF: FPGA: Recv ZSGSRD 36401
17-03-18 01:55:58.172 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:58.172 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:58.172 -07 000000502 INF: FPGA: Recv ZSGSRD 36396
17-03-18 01:55:58.182 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:58.182 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:58.182 -07 000000585 INF: FPGA: Recv ZSGSRD 36405
17-03-18 01:55:58.192 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:58.192 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:58.192 -07 000000561 INF: FPGA: Recv ZSGSRD 36396
17-03-18 01:55:58.202 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:58.202 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:55:58.202 -07 000000502 INF: FPGA: Recv ZPIEZORD 32543
17-03-18 01:55:58.212 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:58.212 -07 000000608 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.804 V. Piezo Error = -8.5 V.
17-03-18 01:55:58.212 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.1 um, Read 10 ADC samples: Avg = 36396 (-173.3 uncal um), Error = 0.9 uncal um, Median = 36396 (-173.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36387 (-173.2 uncal um), Max = 36405 (-173.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:55:58.212 -07 000000608 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36396, posNoise = 9, negNoise = 9
17-03-18 01:55:58.212 -07 000000608 INF: Z Motor: After move to -0.174127, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:55:58.212 -07 000000608 INF: Z Motor: Settle wait time = 1631 ms, measure time = 110 ms (allowed 150 ms), total time = 1741 ms
17-03-18 01:55:58.212 -07 000000608 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:55:58.252 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2129 ms
17-03-18 01:55:58.252 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:55:58.252 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:55:58.252 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:55:58.252 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:55:58.252 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:55:58.252 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:55:58.252 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:55:58.252 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:55:58.252 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:55:58.262 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:55:58.262 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:55:58.262 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:55:58.262 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 01:55:58.272 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:55:58.312 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:55:58.612 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:55:58.612 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:55:58.612 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:55:58.612 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 01:55:58.652 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:55:58.652 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 01:55:58.652 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 386 ms overall
17-03-18 01:55:58.742 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 01:55:58.742 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:55:58.742 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:55:58.742 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 01:55:58.752 -07 000000561 INF: Autofocus start
17-03-18 01:55:58.752 -07 000000561 INF: MeasureProfile start
17-03-18 01:55:58.762 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:55:58.762 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:55:58.762 -07 000000561 INF: MeasureProfile done
17-03-18 01:55:58.762 -07 000000561 INF: X=32  Z correction [um]=0.09220707
17-03-18 01:55:58.762 -07 000000561 INF: Autofocus finished
17-03-18 01:55:58.772 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 01:55:58.772 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:55:58.972 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:55:58.972 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:55:58.972 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.174138977122667. ----------
17-03-18 01:55:58.982 -07 000000610 INF: Cycle	93	Tile	15	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:55:58.982 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36571, sync = True, waitForSettling = True)
17-03-18 01:55:58.982 -07 000000610 INF: Z Motor: Moving to -0.167411 mm, started at -0.174139 mm, distance = 6.73 um
17-03-18 01:55:58.982 -07 000000610 INF: FPGA: Xmit ZDACW 36571\n [Z Motor]
17-03-18 01:55:58.982 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 01:55:58.992 -07 000000610 INF: FPGA: 'ZDACW 36571' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:55:58.992 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:55:58.992 -07 000000629 INF: FPGA: Recv ZDACR 36571
17-03-18 01:55:59.002 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:59.002 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:55:59.152 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:59.152 -07 000000502 INF: FPGA: Recv ZSGSRD 35349
17-03-18 01:55:59.162 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:55:59.162 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:59.162 -07 000000592 INF: FPGA: Recv ZSGSRD 35351
17-03-18 01:55:59.171 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:59.171 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:59.171 -07 000000502 INF: FPGA: Recv ZSGSRD 35349
17-03-18 01:55:59.181 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:59.181 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:59.181 -07 000000592 INF: FPGA: Recv ZSGSRD 35347
17-03-18 01:55:59.191 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:59.191 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:59.191 -07 000000629 INF: FPGA: Recv ZSGSRD 35355
17-03-18 01:55:59.201 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:59.201 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:59.201 -07 000000561 INF: FPGA: Recv ZSGSRD 35353
17-03-18 01:55:59.211 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:59.211 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:59.211 -07 000000608 INF: FPGA: Recv ZSGSRD 35352
17-03-18 01:55:59.221 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:59.221 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:59.221 -07 000000629 INF: FPGA: Recv ZSGSRD 35349
17-03-18 01:55:59.231 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:59.231 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:59.231 -07 000000502 INF: FPGA: Recv ZSGSRD 35348
17-03-18 01:55:59.241 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:59.241 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:55:59.241 -07 000000592 INF: FPGA: Recv ZSGSRD 35356
17-03-18 01:55:59.251 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:59.251 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:55:59.251 -07 000000561 INF: FPGA: Recv ZPIEZORD 31141
17-03-18 01:55:59.261 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:55:59.261 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.580 V. Piezo Error = -9.3 V.
17-03-18 01:55:59.261 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35351 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35350 (-166.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35347 (-166.5 uncal um), Max = 35356 (-166.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:55:59.261 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35351, posNoise = 5, negNoise = 4
17-03-18 01:55:59.261 -07 000000610 INF: Z Motor: After move to -0.167411, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:55:59.261 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:55:59.261 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:55:59.261 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:55:59.261 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:55:59.261 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:55:59.261 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:55:59.261 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:55:59.261 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:55:59.261 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:55:59.261 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:55:59.261 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:55:59.261 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:55:59.261 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:55:59.271 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:55:59.271 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:55:59.271 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:55:59.271 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:55:59.281 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 01:55:59.281 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 01:55:59.281 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 01:55:59.281 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 01:55:59.281 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36748 150\n [Camera]
17-03-18 01:55:59.481 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:55:59.871 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:55:59.871 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:55:59.881 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:55:59.881 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:55:59.881 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:55:59.881 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:55:59.881 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:55:59.881 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:55:59.881 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:55:59.881 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:56:00.071 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36748 777
17-03-18 01:56:00.221 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:56:00.261 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.004458,
17-03-18 01:56:00.281 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:56:00.281 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:56:00.281 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:00.281 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:56:00.281 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:56:00.281 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:00.281 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:56:00.281 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:56:00.281 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:56:00.291 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:56:00.411 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:56:00.411 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:56:00.411 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:56:00.511 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:56:00.511 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:56:00.521 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:56:00.521 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:56:00.521 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:56:00.521 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:56:00.521 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:56:00.601 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 01:56:00.601 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:56:00.601 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36748 150' command took 2 ms to send, 1315 ms to get response, and 1318 ms overall
17-03-18 01:56:00.601 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:56:00.601 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.167425675434527. ------
17-03-18 01:56:00.611 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:56:00.611 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17377 mm
17-03-18 01:56:00.611 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:56:00.611 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 01:56:00.611 -07 000000611 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-18 01:56:00.621 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:00.910 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 01:56:00.910 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 01:56:00.910 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:00.920 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:56:00.920 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 01:56:00.920 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:56:00.920 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:00.920 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:56:00.920 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-18 01:56:00.920 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 01:56:00.930 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 37960, sync = True, waitForSettling = False)
17-03-18 01:56:00.930 -07 000000561 INF: Z Motor: Moving to -0.173770 mm, started at -0.167426 mm, distance = -6.34 um
17-03-18 01:56:00.930 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:56:00.940 -07 000000585 INF: FPGA: Recv YRDPOS 146470
17-03-18 01:56:00.940 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 320 ms to get response, and 329 ms overall
17-03-18 01:56:00.940 -07 000000561 INF: FPGA: Xmit ZDACW 37960\n [Z Motor]
17-03-18 01:56:00.940 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 310 ms to get response, and 326 ms overall
17-03-18 01:56:00.940 -07 000000611 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:00.940 -07 000000611 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:56:00.940 -07 000000611 INF: Y Motor: Moving 1350 steps-30
17-03-18 01:56:00.940 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 01:56:00.950 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:56:00.950 -07 000000561 INF: FPGA: 'ZDACW 37960' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:56:00.960 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:56:00.970 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:56:00.970 -07 000000585 INF: FPGA: Recv ZDACR 37960
17-03-18 01:56:00.980 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:56:00.980 -07 000000561 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 01:56:01.150 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:56:01.150 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 01:56:01.330 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 01:56:01.330 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:56:01.380 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:01.380 -07 000000561 INF: FPGA: Recv YRDPOS 148171
17-03-18 01:56:01.390 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:56:01.390 -07 000000611 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:01.390 -07 000000611 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:56:01.390 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 01:56:01.660 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:56:01.660 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:56:02.339 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:02.339 -07 000000585 INF: FPGA: Recv YRDPOS 148171
17-03-18 01:56:02.349 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:56:02.349 -07 000000611 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:02.379 -07 000000611 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:56:02.379 -07 000000611 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:56:02.379 -07 000000611 INF: Y Motor: Moved to 72.3491 after 1771 ms (table move)
17-03-18 01:56:02.379 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173770 mm (DAC = 37960)
17-03-18 01:56:02.379 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:02.389 -07 000000561 INF: FPGA: Recv ZSGSRD 36338
17-03-18 01:56:02.389 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:56:02.389 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:02.389 -07 000000561 INF: FPGA: Recv ZSGSRD 36338
17-03-18 01:56:02.399 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:56:02.399 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:02.399 -07 000000455 INF: FPGA: Recv ZSGSRD 36341
17-03-18 01:56:02.409 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:02.409 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:02.409 -07 000000611 INF: FPGA: Recv ZSGSRD 36340
17-03-18 01:56:02.419 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:02.419 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:02.419 -07 000000611 INF: FPGA: Recv ZSGSRD 36340
17-03-18 01:56:02.429 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:02.429 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:02.429 -07 000000585 INF: FPGA: Recv ZSGSRD 36341
17-03-18 01:56:02.439 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:02.439 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:02.439 -07 000000561 INF: FPGA: Recv ZSGSRD 36336
17-03-18 01:56:02.449 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:02.449 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:02.449 -07 000000585 INF: FPGA: Recv ZSGSRD 36337
17-03-18 01:56:02.459 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:02.459 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:02.459 -07 000000561 INF: FPGA: Recv ZSGSRD 36339
17-03-18 01:56:02.469 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:02.469 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:02.469 -07 000000611 INF: FPGA: Recv ZSGSRD 36346
17-03-18 01:56:02.479 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:02.479 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:56:02.479 -07 000000561 INF: FPGA: Recv ZPIEZORD 32509
17-03-18 01:56:02.489 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:02.489 -07 000000592 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.792 V. Piezo Error = -8.5 V.
17-03-18 01:56:02.489 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.8 um, Read 10 ADC samples: Avg = 36340 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36340 (-172.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36336 (-172.9 uncal um), Max = 36346 (-172.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:56:02.489 -07 000000592 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36340, posNoise = 6, negNoise = 4
17-03-18 01:56:02.489 -07 000000592 INF: Z Motor: After move to -0.173770, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:56:02.489 -07 000000592 INF: Z Motor: Settle wait time = 1448 ms, measure time = 102 ms (allowed 150 ms), total time = 1550 ms
17-03-18 01:56:02.489 -07 000000592 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 01:56:02.539 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1929 ms
17-03-18 01:56:02.539 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:56:02.539 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:56:02.539 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:56:02.539 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:56:02.539 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:56:02.539 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:56:02.539 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:56:02.539 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:56:02.539 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:56:02.549 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:56:02.549 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:56:02.549 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 01:56:02.559 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 01:56:02.559 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:56:02.609 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:56:02.909 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:56:02.909 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:56:02.909 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:56:02.909 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 01:56:02.949 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:56:02.949 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 01:56:02.949 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 5 ms to send, 382 ms to get response, and 389 ms overall
17-03-18 01:56:03.039 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:56:03.039 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:03.039 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:56:03.039 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 01:56:03.049 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:56:03.049 -07 000000611 INF: Autofocus start
17-03-18 01:56:03.049 -07 000000611 INF: MeasureProfile start
17-03-18 01:56:03.049 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:56:03.059 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:56:03.059 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:56:03.059 -07 000000611 INF: MeasureProfile done
17-03-18 01:56:03.059 -07 000000611 INF: X=32  Z correction [um]=0.09220707
17-03-18 01:56:03.059 -07 000000611 INF: Autofocus finished
17-03-18 01:56:03.259 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:56:03.259 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:56:03.259 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173779221242728. ----------
17-03-18 01:56:03.259 -07 000000610 INF: Cycle	93	Tile	16	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:56:03.269 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36492, sync = True, waitForSettling = True)
17-03-18 01:56:03.269 -07 000000610 INF: Z Motor: Moving to -0.167050 mm, started at -0.173779 mm, distance = 6.73 um
17-03-18 01:56:03.269 -07 000000610 INF: FPGA: Xmit ZDACW 36492\n [Z Motor]
17-03-18 01:56:03.269 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 01:56:03.279 -07 000000610 INF: FPGA: 'ZDACW 36492' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:56:03.279 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:56:03.279 -07 000000561 INF: FPGA: Recv ZDACR 36492
17-03-18 01:56:03.289 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:03.289 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:56:03.439 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:03.439 -07 000000592 INF: FPGA: Recv ZSGSRD 35296
17-03-18 01:56:03.449 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:56:03.449 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:03.449 -07 000000611 INF: FPGA: Recv ZSGSRD 35298
17-03-18 01:56:03.459 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:03.459 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:03.459 -07 000000592 INF: FPGA: Recv ZSGSRD 35290
17-03-18 01:56:03.469 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:03.469 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:03.469 -07 000000611 INF: FPGA: Recv ZSGSRD 35294
17-03-18 01:56:03.479 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:03.479 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:03.479 -07 000000592 INF: FPGA: Recv ZSGSRD 35296
17-03-18 01:56:03.489 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:03.489 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:03.489 -07 000000611 INF: FPGA: Recv ZSGSRD 35298
17-03-18 01:56:03.499 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:03.499 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:03.499 -07 000000592 INF: FPGA: Recv ZSGSRD 35292
17-03-18 01:56:03.509 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:03.509 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:03.509 -07 000000611 INF: FPGA: Recv ZSGSRD 35295
17-03-18 01:56:03.519 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:03.519 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:03.519 -07 000000585 INF: FPGA: Recv ZSGSRD 35298
17-03-18 01:56:03.529 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:03.529 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:03.529 -07 000000626 INF: FPGA: Recv ZSGSRD 35296
17-03-18 01:56:03.539 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:03.539 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:56:03.539 -07 000000561 INF: FPGA: Recv ZPIEZORD 31093
17-03-18 01:56:03.549 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:03.549 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.568 V. Piezo Error = -9.3 V.
17-03-18 01:56:03.549 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35295 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35296 (-166.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35290 (-166.2 uncal um), Max = 35298 (-166.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:56:03.549 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35295, posNoise = 3, negNoise = 5
17-03-18 01:56:03.549 -07 000000610 INF: Z Motor: After move to -0.167050, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:56:03.549 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:56:03.549 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:56:03.549 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:56:03.549 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:56:03.549 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:56:03.549 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:56:03.549 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:56:03.549 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:56:03.549 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:56:03.549 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:56:03.549 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:56:03.549 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:56:03.549 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:56:03.559 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:56:03.559 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:56:03.559 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:56:03.559 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:56:03.569 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:56:03.569 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:56:03.569 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:56:03.569 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:56:03.569 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36669 150\n [Camera]
17-03-18 01:56:03.768 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:56:04.168 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:56:04.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:56:04.168 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:56:04.168 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:56:04.168 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:56:04.168 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:56:04.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:56:04.168 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:56:04.168 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:56:04.168 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:56:04.358 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36669 777
17-03-18 01:56:04.508 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:56:04.568 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:56:04.568 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:56:04.568 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:04.568 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:56:04.568 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:56:04.568 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:04.568 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:56:04.568 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:56:04.568 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:56:04.578 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:56:04.698 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:56:04.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:56:04.698 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:56:04.808 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:56:04.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:56:04.808 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:56:04.808 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:56:04.808 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:56:04.808 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:56:04.808 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:56:04.888 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:56:04.888 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:56:04.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36669 150' command took 2 ms to send, 1303 ms to get response, and 1315 ms overall
17-03-18 01:56:04.888 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:56:04.888 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.167065919554588. ------
17-03-18 01:56:04.888 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:56:04.888 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17351 mm
17-03-18 01:56:04.888 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:56:04.898 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 01:56:04.898 -07 000000561 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 01:56:04.898 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:04.898 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 37903, sync = True, waitForSettling = False)
17-03-18 01:56:04.898 -07 000000606 INF: Z Motor: Moving to -0.173509 mm, started at -0.167066 mm, distance = -6.44 um
17-03-18 01:56:04.898 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:56:04.898 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-18 01:56:04.898 -07 000000611 INF: FPGA: Recv YRDPOS 148171
17-03-18 01:56:04.908 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:56:04.908 -07 000000561 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:04.908 -07 000000561 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:56:04.908 -07 000000561 INF: Y Motor: Moving 1350 steps-28
17-03-18 01:56:04.908 -07 000000606 INF: FPGA: Xmit ZDACW 37903\n [Z Motor]
17-03-18 01:56:04.908 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 01:56:04.918 -07 000000606 INF: FPGA: 'ZDACW 37903' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 01:56:04.918 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:56:04.928 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:56:04.938 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:56:04.938 -07 000000611 INF: FPGA: Recv ZDACR 37903
17-03-18 01:56:04.948 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:56:04.948 -07 000000606 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 01:56:05.118 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:56:05.118 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 219 ms overall
17-03-18 01:56:05.207 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:56:05.207 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:56:05.207 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:05.207 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:56:05.207 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:56:05.207 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:05.217 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:56:05.217 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-18 01:56:05.217 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:56:05.227 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 01:56:05.307 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 01:56:05.307 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 371 ms to get response, and 400 ms overall
17-03-18 01:56:05.347 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:05.347 -07 000000611 INF: FPGA: Recv YRDPOS 149864
17-03-18 01:56:05.357 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:56:05.357 -07 000000561 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:05.357 -07 000000561 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 01:56:05.357 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.843 mm, average velocity = 2.109 mm/sec
17-03-18 01:56:05.617 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 3.986717,
17-03-18 01:56:06.307 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:06.307 -07 000000462 INF: FPGA: Recv YRDPOS 149864
17-03-18 01:56:06.317 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:56:06.317 -07 000000561 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:06.337 -07 000000561 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:56:06.337 -07 000000561 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:56:06.337 -07 000000561 INF: Y Motor: Moved to 73.1758 after 1445 ms (table move)
17-03-18 01:56:06.347 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173509 mm (DAC = 37903)
17-03-18 01:56:06.347 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:06.347 -07 000000569 INF: FPGA: Recv ZSGSRD 36309
17-03-18 01:56:06.357 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:06.357 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:06.357 -07 000000561 INF: FPGA: Recv ZSGSRD 36300
17-03-18 01:56:06.367 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:06.367 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:06.367 -07 000000569 INF: FPGA: Recv ZSGSRD 36292
17-03-18 01:56:06.377 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:06.377 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:06.377 -07 000000569 INF: FPGA: Recv ZSGSRD 36293
17-03-18 01:56:06.387 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:06.387 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:06.387 -07 000000561 INF: FPGA: Recv ZSGSRD 36298
17-03-18 01:56:06.397 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:06.397 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:06.397 -07 000000561 INF: FPGA: Recv ZSGSRD 36291
17-03-18 01:56:06.407 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:06.407 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:06.407 -07 000000462 INF: FPGA: Recv ZSGSRD 36300
17-03-18 01:56:06.417 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:06.417 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:06.417 -07 000000455 INF: FPGA: Recv ZSGSRD 36293
17-03-18 01:56:06.427 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:06.427 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:06.427 -07 000000569 INF: FPGA: Recv ZSGSRD 36305
17-03-18 01:56:06.437 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:06.437 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:06.437 -07 000000455 INF: FPGA: Recv ZSGSRD 36299
17-03-18 01:56:06.447 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:06.447 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:56:06.447 -07 000000569 INF: FPGA: Recv ZPIEZORD 32431
17-03-18 01:56:06.457 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:06.457 -07 000000626 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.784 V. Piezo Error = -8.6 V.
17-03-18 01:56:06.457 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36298 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36298 (-172.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36291 (-172.6 uncal um), Max = 36309 (-172.7 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:56:06.457 -07 000000626 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36298, posNoise = 11, negNoise = 7
17-03-18 01:56:06.457 -07 000000626 INF: Z Motor: After move to -0.173509, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:56:06.457 -07 000000626 INF: Z Motor: Settle wait time = 1448 ms, measure time = 110 ms (allowed 150 ms), total time = 1558 ms
17-03-18 01:56:06.457 -07 000000626 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:56:06.497 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-18 01:56:06.497 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:56:06.497 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:56:06.497 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:56:06.497 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:56:06.497 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:56:06.497 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:56:06.497 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:56:06.497 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:56:06.497 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:56:06.507 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:56:06.507 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:56:06.517 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:56:06.517 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:56:06.517 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:56:06.567 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:56:06.656 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:56:06.656 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:56:06.866 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:56:06.866 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:56:06.866 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:56:06.866 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 01:56:06.896 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:56:06.906 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 01:56:06.906 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 01:56:06.976 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:56:06.976 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:06.976 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:56:06.976 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:56:07.006 -07 000000626 INF: Autofocus start
17-03-18 01:56:07.006 -07 000000626 INF: MeasureProfile start
17-03-18 01:56:07.006 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:56:07.006 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:56:07.016 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:56:07.016 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:56:07.016 -07 000000626 INF: MeasureProfile done
17-03-18 01:56:07.016 -07 000000626 INF: X=16  Z correction [um]=0.01042744
17-03-18 01:56:07.016 -07 000000626 INF: Autofocus finished
17-03-18 01:56:07.216 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:56:07.216 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-18 01:56:07.226 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.173509404332774. ----------
17-03-18 01:56:07.226 -07 000000610 INF: Cycle	93	Tile	17	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:56:07.226 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36417, sync = True, waitForSettling = True)
17-03-18 01:56:07.226 -07 000000610 INF: Z Motor: Moving to -0.166706 mm, started at -0.173509 mm, distance = 6.80 um
17-03-18 01:56:07.226 -07 000000610 INF: FPGA: Xmit ZDACW 36417\n [Z Motor]
17-03-18 01:56:07.226 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:56:07.236 -07 000000610 INF: FPGA: 'ZDACW 36417' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:56:07.236 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:56:07.236 -07 000000608 INF: FPGA: Recv ZDACR 36417
17-03-18 01:56:07.246 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:07.246 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:56:07.396 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:07.396 -07 000000455 INF: FPGA: Recv ZSGSRD 35242
17-03-18 01:56:07.406 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:56:07.406 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:07.406 -07 000000444 INF: FPGA: Recv ZSGSRD 35243
17-03-18 01:56:07.416 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:07.416 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:07.416 -07 000000629 INF: FPGA: Recv ZSGSRD 35237
17-03-18 01:56:07.426 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:07.426 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:07.426 -07 000000561 INF: FPGA: Recv ZSGSRD 35242
17-03-18 01:56:07.436 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:07.436 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:07.436 -07 000000455 INF: FPGA: Recv ZSGSRD 35240
17-03-18 01:56:07.446 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:07.446 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:07.446 -07 000000444 INF: FPGA: Recv ZSGSRD 35249
17-03-18 01:56:07.456 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:07.456 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:07.456 -07 000000502 INF: FPGA: Recv ZSGSRD 35242
17-03-18 01:56:07.466 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:07.466 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:07.466 -07 000000608 INF: FPGA: Recv ZSGSRD 35238
17-03-18 01:56:07.476 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:07.476 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:07.476 -07 000000455 INF: FPGA: Recv ZSGSRD 35244
17-03-18 01:56:07.486 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:07.486 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:07.486 -07 000000569 INF: FPGA: Recv ZSGSRD 35240
17-03-18 01:56:07.496 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:07.496 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:56:07.496 -07 000000608 INF: FPGA: Recv ZPIEZORD 31029
17-03-18 01:56:07.506 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:07.506 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.557 V. Piezo Error = -9.3 V.
17-03-18 01:56:07.506 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35242 (-165.9 uncal um), Error = 0.8 uncal um, Median = 35242 (-165.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35237 (-165.8 uncal um), Max = 35249 (-165.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:56:07.506 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35242, posNoise = 7, negNoise = 5
17-03-18 01:56:07.506 -07 000000610 INF: Z Motor: After move to -0.166706, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:56:07.506 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 01:56:07.506 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:56:07.506 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:56:07.506 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:56:07.506 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:56:07.506 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:56:07.506 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:56:07.506 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:56:07.506 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:56:07.506 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:56:07.506 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:56:07.506 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:56:07.506 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:56:07.506 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:56:07.506 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:56:07.516 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:56:07.516 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:56:07.516 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:56:07.516 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:56:07.516 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:56:07.516 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:56:07.526 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36594 150\n [Camera]
17-03-18 01:56:07.726 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:56:08.115 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 01:56:08.115 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 01:56:08.115 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:56:08.115 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:56:08.115 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:56:08.125 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 01:56:08.125 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 01:56:08.125 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:56:08.125 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:56:08.125 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:56:08.305 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36594 777
17-03-18 01:56:08.455 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:56:08.515 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:56:08.515 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:56:08.515 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:08.515 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:56:08.515 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:56:08.515 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:56:08.515 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:56:08.515 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:08.525 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:56:08.535 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:56:08.645 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:56:08.645 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:56:08.645 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:56:08.755 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:56:08.755 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:56:08.755 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:56:08.765 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:56:08.765 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:56:08.765 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:56:08.765 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:56:08.835 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:56:08.835 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:56:08.835 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36594 150' command took 2 ms to send, 1309 ms to get response, and 1315 ms overall
17-03-18 01:56:08.845 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:56:08.845 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.166725436311075. ------
17-03-18 01:56:08.845 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:56:08.845 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17316 mm
17-03-18 01:56:08.845 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:56:08.845 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 01:56:08.845 -07 000000611 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-18 01:56:08.845 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37827, sync = True, waitForSettling = False)
17-03-18 01:56:08.845 -07 000000502 INF: Z Motor: Moving to -0.173161 mm, started at -0.166725 mm, distance = -6.44 um
17-03-18 01:56:08.845 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:56:08.855 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:56:08.855 -07 000000502 INF: FPGA: Xmit ZDACW 37827\n [Z Motor]
17-03-18 01:56:08.855 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 01:56:08.865 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:08.865 -07 000000502 INF: FPGA: 'ZDACW 37827' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:56:08.865 -07 000000561 INF: FPGA: Recv YRDPOS 149864
17-03-18 01:56:08.875 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:56:08.875 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 01:56:08.875 -07 000000611 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:08.875 -07 000000611 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:56:08.875 -07 000000611 INF: Y Motor: Moving 1355 steps-34
17-03-18 01:56:08.885 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:56:08.885 -07 000000455 INF: FPGA: Recv ZDACR 37827
17-03-18 01:56:08.895 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:56:08.895 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:56:08.895 -07 000000502 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 01:56:09.075 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:56:09.075 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:56:09.165 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:56:09.165 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:56:09.165 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:09.165 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:56:09.165 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:56:09.165 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:09.165 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:56:09.165 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:56:09.165 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-18 01:56:09.175 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 01:56:09.275 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 01:56:09.275 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 398 ms overall
17-03-18 01:56:09.305 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:09.305 -07 000000455 INF: FPGA: Recv YRDPOS 151567
17-03-18 01:56:09.315 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:56:09.315 -07 000000611 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:09.315 -07 000000611 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 01:56:09.315 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.847 mm, average velocity = 2.117 mm/sec
17-03-18 01:56:10.264 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:10.264 -07 000000462 INF: FPGA: Recv YRDPOS 151568
17-03-18 01:56:10.274 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:56:10.274 -07 000000611 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:10.294 -07 000000611 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:56:10.294 -07 000000611 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:56:10.294 -07 000000611 INF: Y Motor: Moved to 74.0078 after 1443 ms (table move)
17-03-18 01:56:10.294 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173161 mm (DAC = 37827)
17-03-18 01:56:10.294 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:10.294 -07 000000455 INF: FPGA: Recv ZSGSRD 36249
17-03-18 01:56:10.304 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:56:10.304 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:10.304 -07 000000438 INF: FPGA: Recv ZSGSRD 36244
17-03-18 01:56:10.314 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:10.314 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:10.314 -07 000000455 INF: FPGA: Recv ZSGSRD 36245
17-03-18 01:56:10.324 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:10.324 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:10.324 -07 000000444 INF: FPGA: Recv ZSGSRD 36242
17-03-18 01:56:10.334 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:10.334 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:10.334 -07 000000502 INF: FPGA: Recv ZSGSRD 36241
17-03-18 01:56:10.344 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:10.344 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:10.344 -07 000000455 INF: FPGA: Recv ZSGSRD 36250
17-03-18 01:56:10.354 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:10.354 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:10.354 -07 000000502 INF: FPGA: Recv ZSGSRD 36248
17-03-18 01:56:10.364 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:10.364 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:10.364 -07 000000455 INF: FPGA: Recv ZSGSRD 36246
17-03-18 01:56:10.374 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:10.374 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:10.374 -07 000000502 INF: FPGA: Recv ZSGSRD 36247
17-03-18 01:56:10.384 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:10.384 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:10.384 -07 000000608 INF: FPGA: Recv ZSGSRD 36245
17-03-18 01:56:10.394 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:10.394 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:56:10.394 -07 000000502 INF: FPGA: Recv ZPIEZORD 32340
17-03-18 01:56:10.404 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:10.404 -07 000000629 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.772 V. Piezo Error = -8.6 V.
17-03-18 01:56:10.404 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36246 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36246 (-172.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36241 (-172.3 uncal um), Max = 36250 (-172.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:56:10.404 -07 000000629 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36246, posNoise = 4, negNoise = 5
17-03-18 01:56:10.404 -07 000000629 INF: Z Motor: After move to -0.173161, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:56:10.404 -07 000000629 INF: Z Motor: Settle wait time = 1447 ms, measure time = 106 ms (allowed 150 ms), total time = 1553 ms
17-03-18 01:56:10.404 -07 000000629 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 01:56:10.454 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-18 01:56:10.454 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:56:10.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:56:10.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:56:10.454 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:56:10.454 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:56:10.454 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:56:10.454 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:56:10.454 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:56:10.454 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:56:10.464 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:56:10.464 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:56:10.474 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:56:10.474 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:56:10.474 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:56:10.524 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:56:10.824 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:56:10.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:56:10.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:56:10.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 01:56:10.854 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:56:10.864 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 01:56:10.864 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 01:56:10.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:56:10.934 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:10.934 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:56:10.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:56:10.964 -07 000000444 INF: Autofocus start
17-03-18 01:56:10.964 -07 000000444 INF: MeasureProfile start
17-03-18 01:56:10.974 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:56:10.974 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 3.975845,
17-03-18 01:56:10.974 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:56:10.984 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:56:10.984 -07 000000444 INF: MeasureProfile done
17-03-18 01:56:10.984 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:56:10.984 -07 000000444 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 01:56:10.984 -07 000000444 INF: Autofocus finished
17-03-18 01:56:11.183 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:56:11.183 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:56:11.183 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.173175345301403. ----------
17-03-18 01:56:11.183 -07 000000610 INF: Cycle	93	Tile	18	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:56:11.193 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36307, sync = True, waitForSettling = True)
17-03-18 01:56:11.193 -07 000000610 INF: Z Motor: Moving to -0.166203 mm, started at -0.173175 mm, distance = 6.97 um
17-03-18 01:56:11.193 -07 000000610 INF: FPGA: Xmit ZDACW 36307\n [Z Motor]
17-03-18 01:56:11.193 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 01:56:11.203 -07 000000610 INF: FPGA: 'ZDACW 36307' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:56:11.203 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:56:11.203 -07 000000444 INF: FPGA: Recv ZDACR 36307
17-03-18 01:56:11.213 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:11.213 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:56:11.363 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:11.363 -07 000000608 INF: FPGA: Recv ZSGSRD 35157
17-03-18 01:56:11.373 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:56:11.373 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:11.373 -07 000000502 INF: FPGA: Recv ZSGSRD 35167
17-03-18 01:56:11.383 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:11.383 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:11.383 -07 000000608 INF: FPGA: Recv ZSGSRD 35159
17-03-18 01:56:11.393 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:11.393 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:11.393 -07 000000444 INF: FPGA: Recv ZSGSRD 35167
17-03-18 01:56:11.403 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:11.403 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:11.403 -07 000000629 INF: FPGA: Recv ZSGSRD 35162
17-03-18 01:56:11.413 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:11.413 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:11.413 -07 000000629 INF: FPGA: Recv ZSGSRD 35161
17-03-18 01:56:11.423 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:11.423 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:11.423 -07 000000502 INF: FPGA: Recv ZSGSRD 35165
17-03-18 01:56:11.433 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:11.433 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:11.433 -07 000000502 INF: FPGA: Recv ZSGSRD 35162
17-03-18 01:56:11.443 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:11.443 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:11.443 -07 000000502 INF: FPGA: Recv ZSGSRD 35161
17-03-18 01:56:11.453 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:11.453 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:11.453 -07 000000629 INF: FPGA: Recv ZSGSRD 35163
17-03-18 01:56:11.463 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:11.463 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:56:11.463 -07 000000467 INF: FPGA: Recv ZPIEZORD 30952
17-03-18 01:56:11.473 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:11.473 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.540 V. Piezo Error = -9.3 V.
17-03-18 01:56:11.473 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35162 (-165.3 uncal um), Error = 0.9 uncal um, Median = 35162 (-165.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35157 (-165.3 uncal um), Max = 35167 (-165.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:56:11.473 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35162, posNoise = 5, negNoise = 5
17-03-18 01:56:11.473 -07 000000610 INF: Z Motor: After move to -0.166203, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:56:11.473 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:56:11.473 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:56:11.473 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:56:11.473 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:56:11.473 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:56:11.473 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:56:11.473 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:56:11.473 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:56:11.473 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:56:11.473 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:56:11.473 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:56:11.473 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:56:11.473 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:56:11.483 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:56:11.483 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:56:11.483 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:56:11.483 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:56:11.493 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:56:11.493 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:56:11.493 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:56:11.493 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:56:11.493 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36484 150\n [Camera]
17-03-18 01:56:11.653 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:56:11.653 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:56:11.693 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:56:12.083 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:56:12.083 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:56:12.083 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:56:12.083 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:56:12.083 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:56:12.083 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:56:12.083 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:56:12.083 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:56:12.083 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:56:12.083 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:56:12.273 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36484 777
17-03-18 01:56:12.423 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:56:12.493 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 01:56:12.493 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:56:12.493 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:12.493 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:56:12.493 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:56:12.493 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:12.493 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:56:12.493 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 01:56:12.493 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:56:12.503 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 01:56:12.622 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 01:56:12.622 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 01:56:12.622 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:56:12.722 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 01:56:12.722 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 01:56:12.732 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:56:12.732 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:56:12.732 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:56:12.732 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:56:12.732 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:56:12.802 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:56:12.802 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:56:12.802 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36484 150' command took 4 ms to send, 1308 ms to get response, and 1315 ms overall
17-03-18 01:56:12.812 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:56:12.812 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.166211499339734. ------
17-03-18 01:56:12.812 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:56:12.812 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17216 mm
17-03-18 01:56:12.812 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:56:12.812 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 01:56:12.812 -07 000000608 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 01:56:12.812 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:56:12.812 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37609, sync = True, waitForSettling = False)
17-03-18 01:56:12.812 -07 000000502 INF: Z Motor: Moving to -0.172163 mm, started at -0.166211 mm, distance = -5.95 um
17-03-18 01:56:12.822 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:56:12.822 -07 000000502 INF: FPGA: Xmit ZDACW 37609\n [Z Motor]
17-03-18 01:56:12.822 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 01:56:12.832 -07 000000502 INF: FPGA: 'ZDACW 37609' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:56:12.832 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:12.832 -07 000000461 INF: FPGA: Recv YRDPOS 151568
17-03-18 01:56:12.842 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:56:12.842 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:56:12.842 -07 000000608 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:12.842 -07 000000608 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:56:12.842 -07 000000608 INF: Y Motor: Moving 1352 steps-31
17-03-18 01:56:12.852 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:56:12.852 -07 000000444 INF: FPGA: Recv ZDACR 37609
17-03-18 01:56:12.862 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:56:12.862 -07 000000502 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 01:56:12.862 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:56:13.042 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:56:13.042 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:56:13.112 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 01:56:13.112 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 01:56:13.112 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:13.122 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:56:13.122 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 01:56:13.122 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 01:56:13.122 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:13.122 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:56:13.122 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 505 ms.
17-03-18 01:56:13.122 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:56:13.232 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 01:56:13.232 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 01:56:13.262 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:13.262 -07 000000606 INF: FPGA: Recv YRDPOS 153254
17-03-18 01:56:13.272 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:56:13.272 -07 000000608 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:13.272 -07 000000608 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 01:56:13.272 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.845 mm, average velocity = 2.133 mm/sec
17-03-18 01:56:14.221 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:14.221 -07 000000585 INF: FPGA: Recv YRDPOS 153254
17-03-18 01:56:14.231 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:56:14.231 -07 000000608 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:14.241 -07 000000608 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:56:14.241 -07 000000608 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:56:14.241 -07 000000608 INF: Y Motor: Moved to 74.8311 after 1431 ms (table move)
17-03-18 01:56:14.251 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172163 mm (DAC = 37609)
17-03-18 01:56:14.251 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:14.251 -07 000000461 INF: FPGA: Recv ZSGSRD 36099
17-03-18 01:56:14.261 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:56:14.261 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:14.261 -07 000000585 INF: FPGA: Recv ZSGSRD 36089
17-03-18 01:56:14.271 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:14.271 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:14.271 -07 000000462 INF: FPGA: Recv ZSGSRD 36083
17-03-18 01:56:14.281 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:14.281 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:14.281 -07 000000608 INF: FPGA: Recv ZSGSRD 36093
17-03-18 01:56:14.291 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:14.291 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:14.291 -07 000000502 INF: FPGA: Recv ZSGSRD 36094
17-03-18 01:56:14.301 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:14.301 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:14.301 -07 000000608 INF: FPGA: Recv ZSGSRD 36095
17-03-18 01:56:14.311 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:14.311 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:14.311 -07 000000462 INF: FPGA: Recv ZSGSRD 36102
17-03-18 01:56:14.321 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:14.321 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:14.321 -07 000000444 INF: FPGA: Recv ZSGSRD 36086
17-03-18 01:56:14.331 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:14.331 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:14.331 -07 000000629 INF: FPGA: Recv ZSGSRD 36093
17-03-18 01:56:14.341 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:14.341 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:14.341 -07 000000467 INF: FPGA: Recv ZSGSRD 36084
17-03-18 01:56:14.351 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:14.351 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:56:14.351 -07 000000629 INF: FPGA: Recv ZPIEZORD 32173
17-03-18 01:56:14.361 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:14.361 -07 000000592 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.739 V. Piezo Error = -8.7 V.
17-03-18 01:56:14.361 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36092 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36093 (-171.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36083 (-171.2 uncal um), Max = 36102 (-171.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 01:56:14.361 -07 000000592 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36092, posNoise = 10, negNoise = 9
17-03-18 01:56:14.361 -07 000000592 INF: Z Motor: After move to -0.172163, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:56:14.361 -07 000000592 INF: Z Motor: Settle wait time = 1434 ms, measure time = 108 ms (allowed 150 ms), total time = 1542 ms
17-03-18 01:56:14.361 -07 000000592 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:56:14.411 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-18 01:56:14.411 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:56:14.411 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:56:14.411 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:56:14.411 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:56:14.411 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:56:14.411 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:56:14.411 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:56:14.411 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:56:14.411 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:56:14.421 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:56:14.421 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:56:14.431 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 01:56:14.431 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 01:56:14.431 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:56:14.481 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:56:14.771 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:56:14.771 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:56:14.771 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:56:14.781 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 01:56:14.811 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:56:14.821 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 01:56:14.821 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 386 ms overall
17-03-18 01:56:14.891 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 01:56:14.891 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:14.891 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:56:14.891 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 01:56:14.921 -07 000000585 INF: Autofocus start
17-03-18 01:56:14.921 -07 000000585 INF: MeasureProfile start
17-03-18 01:56:14.921 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:56:14.921 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:56:14.931 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:56:14.931 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:56:14.931 -07 000000585 INF: MeasureProfile done
17-03-18 01:56:14.931 -07 000000585 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 01:56:14.931 -07 000000585 INF: Autofocus finished
17-03-18 01:56:15.131 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:56:15.131 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:56:15.141 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.172186016631571. ----------
17-03-18 01:56:15.141 -07 000000610 INF: Cycle	93	Tile	19	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:56:15.141 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36089, sync = True, waitForSettling = True)
17-03-18 01:56:15.141 -07 000000610 INF: Z Motor: Moving to -0.165205 mm, started at -0.172186 mm, distance = 6.98 um
17-03-18 01:56:15.141 -07 000000610 INF: FPGA: Xmit ZDACW 36089\n [Z Motor]
17-03-18 01:56:15.151 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:56:15.151 -07 000000610 INF: FPGA: 'ZDACW 36089' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 01:56:15.151 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:56:15.151 -07 000000608 INF: FPGA: Recv ZDACR 36089
17-03-18 01:56:15.161 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:56:15.161 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:56:15.311 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:15.311 -07 000000569 INF: FPGA: Recv ZSGSRD 35009
17-03-18 01:56:15.321 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:56:15.321 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:15.321 -07 000000585 INF: FPGA: Recv ZSGSRD 35011
17-03-18 01:56:15.331 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:15.331 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:15.331 -07 000000585 INF: FPGA: Recv ZSGSRD 35005
17-03-18 01:56:15.341 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:15.341 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:15.341 -07 000000626 INF: FPGA: Recv ZSGSRD 35007
17-03-18 01:56:15.351 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:15.351 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:15.351 -07 000000608 INF: FPGA: Recv ZSGSRD 35005
17-03-18 01:56:15.361 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:15.361 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:15.361 -07 000000569 INF: FPGA: Recv ZSGSRD 35009
17-03-18 01:56:15.371 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:15.371 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:15.371 -07 000000608 INF: FPGA: Recv ZSGSRD 35010
17-03-18 01:56:15.381 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:15.381 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:15.381 -07 000000608 INF: FPGA: Recv ZSGSRD 35006
17-03-18 01:56:15.391 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:15.391 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:15.391 -07 000000608 INF: FPGA: Recv ZSGSRD 35008
17-03-18 01:56:15.401 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:15.401 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:15.401 -07 000000585 INF: FPGA: Recv ZSGSRD 35007
17-03-18 01:56:15.411 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:15.411 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:56:15.411 -07 000000626 INF: FPGA: Recv ZPIEZORD 30736
17-03-18 01:56:15.421 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:15.421 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.507 V. Piezo Error = -9.4 V.
17-03-18 01:56:15.421 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.2 um, Read 10 ADC samples: Avg = 35008 (-164.4 uncal um), Error = 0.8 uncal um, Median = 35008 (-164.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35005 (-164.3 uncal um), Max = 35011 (-164.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:56:15.421 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35008, posNoise = 3, negNoise = 3
17-03-18 01:56:15.421 -07 000000610 INF: Z Motor: After move to -0.165205, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:56:15.421 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 01:56:15.421 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:56:15.421 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:56:15.421 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:56:15.421 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:56:15.421 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:56:15.431 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:56:15.431 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:56:15.431 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:56:15.431 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:56:15.431 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:56:15.431 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:56:15.431 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:56:15.431 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:56:15.431 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:56:15.431 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:56:15.431 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:56:15.441 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:56:15.441 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:56:15.441 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 01:56:15.441 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:56:15.441 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36266 150\n [Camera]
17-03-18 01:56:15.640 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:56:16.040 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:56:16.040 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:56:16.040 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:56:16.040 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:56:16.040 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:56:16.040 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:56:16.040 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:56:16.040 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:56:16.040 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:56:16.040 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:56:16.230 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36266 777
17-03-18 01:56:16.350 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.009895,
17-03-18 01:56:16.380 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:56:16.430 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:56:16.430 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:56:16.430 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:16.440 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:56:16.440 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:56:16.440 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:16.440 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:56:16.440 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:56:16.440 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:56:16.450 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 01:56:16.570 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:56:16.570 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:56:16.570 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:56:16.680 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:56:16.680 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:56:16.680 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:56:16.680 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:56:16.680 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:56:16.690 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:56:16.690 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:56:16.690 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:56:16.690 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:56:16.760 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 01:56:16.760 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:56:16.760 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36266 150' command took 2 ms to send, 1303 ms to get response, and 1315 ms overall
17-03-18 01:56:17.079 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 01:56:17.079 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:56:17.079 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:17.079 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:56:17.079 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:56:17.079 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:56:17.079 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:17.089 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:56:17.089 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-18 01:56:17.089 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 01:56:17.089 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:56:17.129 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 01:56:17.129 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 01:56:17.169 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 01:56:17.169 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 01:56:17.169 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 01:56:17.179 -07 000000462 INF: FPGA: Recv EMCUR 
17-03-18 01:56:17.179 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 01:56:17.179 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 01:56:17.679 -07 000000585 INF: FPGA: Recv EMIN
17-03-18 01:56:17.679 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 494 ms to get response, and 502 ms overall
17-03-18 01:56:17.679 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 01:56:17.679 -07 000000606 INF: FPGA: Recv EMCUR 
17-03-18 01:56:17.689 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:56:17.689 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:56:17.689 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8310546875, Z-Position -0.165222170669903. ------
17-03-18 01:56:17.689 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:56:17.689 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13990 mm
17-03-18 01:56:17.689 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:56:17.699 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 30561, sync = True, waitForSettling = False)
17-03-18 01:56:17.699 -07 000000455 INF: Z Motor: Moving to -0.139899 mm, started at -0.165222 mm, distance = 25.32 um
17-03-18 01:56:17.699 -07 000000455 INF: FPGA: Xmit ZDACW 30561\n [Z Motor]
17-03-18 01:56:17.699 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:56:17.699 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:56:17.699 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 01:56:17.699 -07 000000462 INF: Y Motor: Moving to 59.9126 mm, started at 74.8311 mm, delta = -14.9184 mm
17-03-18 01:56:17.699 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 01:56:17.709 -07 000000455 INF: FPGA: 'ZDACW 30561' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:17.709 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:56:17.719 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:17.719 -07 000000606 INF: FPGA: Recv YRDPOS 153256
17-03-18 01:56:17.729 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:56:17.729 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 01:56:17.729 -07 000000462 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:17.729 -07 000000608 INF: FPGA: Recv ZDACR 30561
17-03-18 01:56:17.729 -07 000000462 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 01:56:17.729 -07 000000462 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 01:56:17.739 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:56:17.739 -07 000000455 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 01:56:17.739 -07 000000462 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 01:56:17.909 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:56:17.909 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 01:56:19.358 -07 000000608 INF: FPGA: Recv YMVTO 122703 23903
17-03-18 01:56:19.358 -07 000000462 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1629 ms overall
17-03-18 01:56:19.358 -07 000000462 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 01:56:19.358 -07 000000462 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23871 steps, but required 23903 steps (14.939 mm). Slippage = 0.020 mm (0.00%).
17-03-18 01:56:19.358 -07 000000462 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1629 ms, distance = 14.918 mm, average velocity = 9.158 mm/sec
17-03-18 01:56:21.646 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:56:21.646 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:56:21.706 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 3.989471,
17-03-18 01:56:22.206 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:22.206 -07 000000569 INF: FPGA: Recv YRDPOS 122698
17-03-18 01:56:22.216 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:56:22.216 -07 000000462 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:22.246 -07 000000462 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:56:22.246 -07 000000462 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-18 01:56:22.246 -07 000000462 INF: Y Motor: Moved to 59.9111 after 4554 ms
17-03-18 01:56:22.246 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139899 mm (DAC = 30561)
17-03-18 01:56:22.246 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:22.256 -07 000000592 INF: FPGA: Recv ZSGSRD 31074
17-03-18 01:56:22.266 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:56:22.266 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:22.266 -07 000000626 INF: FPGA: Recv ZSGSRD 31061
17-03-18 01:56:22.276 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:22.276 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:22.276 -07 000000569 INF: FPGA: Recv ZSGSRD 31060
17-03-18 01:56:22.286 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:22.286 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:22.286 -07 000000569 INF: FPGA: Recv ZSGSRD 31071
17-03-18 01:56:22.296 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:22.296 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:22.296 -07 000000569 INF: FPGA: Recv ZSGSRD 31071
17-03-18 01:56:22.306 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:56:22.306 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:22.306 -07 000000606 INF: FPGA: Recv ZSGSRD 31066
17-03-18 01:56:22.316 -07 000000438 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:22.316 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:22.316 -07 000000455 INF: FPGA: Recv ZSGSRD 31068
17-03-18 01:56:22.326 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:22.326 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:22.326 -07 000000444 INF: FPGA: Recv ZSGSRD 31070
17-03-18 01:56:22.336 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:22.336 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:22.336 -07 000000444 INF: FPGA: Recv ZSGSRD 31070
17-03-18 01:56:22.346 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:22.346 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:22.346 -07 000000592 INF: FPGA: Recv ZSGSRD 31064
17-03-18 01:56:22.356 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:22.356 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:56:22.356 -07 000000608 INF: FPGA: Recv ZPIEZORD 26604
17-03-18 01:56:22.366 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:22.366 -07 000000438 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.663 V. Piezo Error = -9.8 V.
17-03-18 01:56:22.366 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.9 um, Read 10 ADC samples: Avg = 31068 (-139.1 uncal um), Error = 0.8 uncal um, Median = 31069 (-139.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 31060 (-139.1 uncal um), Max = 31074 (-139.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:56:22.366 -07 000000438 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31068, posNoise = 6, negNoise = 8
17-03-18 01:56:22.366 -07 000000438 INF: Z Motor: After move to -0.139899, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:56:22.366 -07 000000438 INF: Z Motor: Settle wait time = 4558 ms, measure time = 111 ms (allowed 150 ms), total time = 4669 ms
17-03-18 01:56:22.366 -07 000000438 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:56:22.406 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4712 ms
17-03-18 01:56:22.406 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:56:22.406 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:56:22.406 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:56:22.406 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:56:22.406 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:56:22.406 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:56:22.406 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:56:22.406 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:56:22.406 -07 000000592 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 01:56:22.436 -07 000000592 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 22 ms.
17-03-18 01:56:22.436 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:56:22.436 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 01:56:22.436 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:56:22.446 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:56:22.446 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 41 ms.
17-03-18 01:56:22.446 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:56:22.496 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:56:22.796 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:56:22.796 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:56:22.796 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:56:22.796 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 01:56:22.836 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:56:22.836 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 01:56:22.836 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 01:56:22.916 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 01:56:22.916 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:22.916 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:56:22.916 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 01:56:22.936 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:56:22.936 -07 000000569 INF: Image SNR check: start
17-03-18 01:56:22.936 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:56:22.946 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:56:22.946 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:56:22.946 -07 000000569 INF: Image SNR check: pass  [peak (Max-Min)=126.96]
17-03-18 01:56:22.946 -07 000000569 INF: Autofocus start
17-03-18 01:56:22.946 -07 000000569 INF: MeasureProfile start
17-03-18 01:56:22.966 -07 000000569 INF: MeasureProfile done
17-03-18 01:56:22.966 -07 000000569 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:56:22.966 -07 000000569 INF: Autofocus finished
17-03-18 01:56:23.145 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:56:23.145 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:56:23.145 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.139910774831364. ----------
17-03-18 01:56:23.145 -07 000000610 INF: Cycle	93	Tile	1	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:56:23.155 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29085, sync = True, waitForSettling = True)
17-03-18 01:56:23.155 -07 000000610 INF: Z Motor: Moving to -0.133143 mm, started at -0.139911 mm, distance = 6.77 um
17-03-18 01:56:23.155 -07 000000610 INF: FPGA: Xmit ZDACW 29085\n [Z Motor]
17-03-18 01:56:23.155 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 01:56:23.165 -07 000000610 INF: FPGA: 'ZDACW 29085' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:56:23.165 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:56:23.165 -07 000000444 INF: FPGA: Recv ZDACR 29085
17-03-18 01:56:23.175 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:23.175 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:56:23.325 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:23.325 -07 000000444 INF: FPGA: Recv ZSGSRD 30012
17-03-18 01:56:23.335 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:23.335 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:23.335 -07 000000606 INF: FPGA: Recv ZSGSRD 30012
17-03-18 01:56:23.345 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:23.345 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:23.345 -07 000000569 INF: FPGA: Recv ZSGSRD 30015
17-03-18 01:56:23.355 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:23.355 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:23.355 -07 000000444 INF: FPGA: Recv ZSGSRD 30011
17-03-18 01:56:23.365 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:23.365 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:23.365 -07 000000608 INF: FPGA: Recv ZSGSRD 30009
17-03-18 01:56:23.375 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:23.375 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:23.375 -07 000000569 INF: FPGA: Recv ZSGSRD 30012
17-03-18 01:56:23.385 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:23.385 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:23.385 -07 000000569 INF: FPGA: Recv ZSGSRD 30020
17-03-18 01:56:23.395 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:23.395 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:23.395 -07 000000569 INF: FPGA: Recv ZSGSRD 30018
17-03-18 01:56:23.405 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:23.405 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:23.405 -07 000000606 INF: FPGA: Recv ZSGSRD 30008
17-03-18 01:56:23.415 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:23.415 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:23.415 -07 000000606 INF: FPGA: Recv ZSGSRD 30014
17-03-18 01:56:23.425 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:23.425 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:56:23.425 -07 000000608 INF: FPGA: Recv ZPIEZORD 25498
17-03-18 01:56:23.435 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:23.435 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.438 V. Piezo Error = -9.9 V.
17-03-18 01:56:23.435 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30013 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30012 (-132.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30008 (-132.3 uncal um), Max = 30020 (-132.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:56:23.435 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30013, posNoise = 7, negNoise = 5
17-03-18 01:56:23.435 -07 000000610 INF: Z Motor: After move to -0.133143, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:56:23.435 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:56:23.435 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:56:23.435 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:56:23.435 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:56:23.435 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:56:23.435 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:56:23.435 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:56:23.435 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:56:23.435 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:56:23.435 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:56:23.435 -07 000000444 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 01:56:23.435 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:56:23.435 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:56:23.445 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:56:23.445 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:56:23.445 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:56:23.445 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 01:56:23.455 -07 000000444 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 01:56:23.455 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:56:23.465 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:56:23.465 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:56:23.465 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:56:23.465 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 34 ms.
17-03-18 01:56:23.475 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 29262 150\n [Camera]
17-03-18 01:56:23.665 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:56:24.065 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:56:24.065 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:56:24.065 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:56:24.065 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:56:24.065 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:56:24.065 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:56:24.065 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:56:24.065 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:56:24.065 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:56:24.065 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:56:24.255 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29262 777
17-03-18 01:56:24.405 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:56:24.465 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:56:24.465 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:56:24.465 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:24.465 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 01:56:24.465 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:56:24.465 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:24.465 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:56:24.465 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:56:24.475 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:56:24.475 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:56:24.594 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:56:24.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:56:24.594 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:56:24.594 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:56:24.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:56:24.594 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:56:24.604 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:56:24.604 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:56:24.604 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:56:24.604 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:56:24.784 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 01:56:24.784 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:56:24.784 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 29262 150' command took 2 ms to send, 1305 ms to get response, and 1315 ms overall
17-03-18 01:56:24.784 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:56:24.784 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.133133231021807. ------
17-03-18 01:56:24.794 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:56:24.794 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13941 mm
17-03-18 01:56:24.794 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:56:24.794 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:56:24.794 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30453, sync = True, waitForSettling = False)
17-03-18 01:56:24.794 -07 000000462 INF: Z Motor: Moving to -0.139405 mm, started at -0.133133 mm, distance = -6.27 um
17-03-18 01:56:24.794 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 01:56:24.794 -07 000000461 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-18 01:56:24.804 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:56:24.804 -07 000000462 INF: FPGA: Xmit ZDACW 30453\n [Z Motor]
17-03-18 01:56:24.804 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 01:56:24.814 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:24.814 -07 000000462 INF: FPGA: 'ZDACW 30453' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:56:24.814 -07 000000444 INF: FPGA: Recv YRDPOS 122698
17-03-18 01:56:24.824 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:56:24.824 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 01:56:24.824 -07 000000461 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:24.824 -07 000000461 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:56:24.824 -07 000000461 INF: Y Motor: Moving 1330 steps2
17-03-18 01:56:24.834 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:56:24.834 -07 000000444 INF: FPGA: Recv ZDACR 30453
17-03-18 01:56:24.844 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:56:24.844 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:56:24.844 -07 000000462 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 01:56:24.994 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 01:56:24.994 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:56:24.994 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:24.994 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:56:24.994 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:56:24.994 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:25.004 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:56:25.004 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:56:25.004 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 01:56:25.004 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:56:25.024 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:56:25.024 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:56:25.214 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 01:56:25.214 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:56:25.254 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:25.254 -07 000000569 INF: FPGA: Recv YRDPOS 124381
17-03-18 01:56:25.264 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:56:25.264 -07 000000461 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:25.264 -07 000000461 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 01:56:25.264 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.094 mm/sec
17-03-18 01:56:26.213 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:26.213 -07 000000608 INF: FPGA: Recv YRDPOS 124381
17-03-18 01:56:26.223 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:56:26.223 -07 000000461 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:26.243 -07 000000461 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:56:26.243 -07 000000461 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:56:26.243 -07 000000461 INF: Y Motor: Moved to 60.7329 after 1453 ms (table move)
17-03-18 01:56:26.253 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139405 mm (DAC = 30453)
17-03-18 01:56:26.253 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:26.253 -07 000000467 INF: FPGA: Recv ZSGSRD 30990
17-03-18 01:56:26.263 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:56:26.263 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:26.263 -07 000000592 INF: FPGA: Recv ZSGSRD 30985
17-03-18 01:56:26.273 -07 000000606 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:26.273 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:26.273 -07 000000467 INF: FPGA: Recv ZSGSRD 30990
17-03-18 01:56:26.283 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:26.283 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:26.283 -07 000000592 INF: FPGA: Recv ZSGSRD 30991
17-03-18 01:56:26.293 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:26.293 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:26.293 -07 000000592 INF: FPGA: Recv ZSGSRD 30999
17-03-18 01:56:26.303 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:26.303 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:26.303 -07 000000592 INF: FPGA: Recv ZSGSRD 30994
17-03-18 01:56:26.313 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:26.313 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:26.313 -07 000000444 INF: FPGA: Recv ZSGSRD 30983
17-03-18 01:56:26.323 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:26.323 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:26.323 -07 000000444 INF: FPGA: Recv ZSGSRD 30990
17-03-18 01:56:26.333 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:26.333 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:26.333 -07 000000444 INF: FPGA: Recv ZSGSRD 30990
17-03-18 01:56:26.343 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:26.343 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:26.343 -07 000000444 INF: FPGA: Recv ZSGSRD 30993
17-03-18 01:56:26.353 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:26.353 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:56:26.353 -07 000000444 INF: FPGA: Recv ZPIEZORD 26810
17-03-18 01:56:26.363 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:26.363 -07 000000606 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.647 V. Piezo Error = -9.2 V.
17-03-18 01:56:26.363 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.4 um, Read 10 ADC samples: Avg = 30990 (-138.6 uncal um), Error = 0.8 uncal um, Median = 30990 (-138.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30983 (-138.6 uncal um), Max = 30999 (-138.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:56:26.363 -07 000000606 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30990, posNoise = 9, negNoise = 7
17-03-18 01:56:26.363 -07 000000606 INF: Z Motor: After move to -0.139405, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:56:26.363 -07 000000606 INF: Z Motor: Settle wait time = 1457 ms, measure time = 108 ms (allowed 150 ms), total time = 1565 ms
17-03-18 01:56:26.363 -07 000000606 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:56:26.413 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 01:56:26.413 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:56:26.413 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:56:26.413 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:56:26.413 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:56:26.413 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:56:26.413 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:56:26.413 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:56:26.413 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:56:26.413 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:56:26.423 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:56:26.423 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:56:26.433 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 01:56:26.433 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 01:56:26.433 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:56:26.473 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:56:26.643 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:56:26.643 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:56:26.773 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:56:26.773 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:56:26.773 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:56:26.783 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 01:56:26.813 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:56:26.813 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 01:56:26.813 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 01:56:26.903 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 01:56:26.903 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:26.903 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:56:26.903 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 01:56:27.013 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:56:27.013 -07 000000569 INF: Autofocus start
17-03-18 01:56:27.013 -07 000000569 INF: MeasureProfile start
17-03-18 01:56:27.013 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:56:27.023 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:56:27.023 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:56:27.023 -07 000000569 INF: MeasureProfile done
17-03-18 01:56:27.023 -07 000000569 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 01:56:27.023 -07 000000569 INF: Autofocus finished
17-03-18 01:56:27.063 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.019446,
17-03-18 01:56:27.223 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:56:27.223 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:56:27.223 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.139409686284307. ----------
17-03-18 01:56:27.223 -07 000000610 INF: Cycle	93	Tile	2	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:56:27.233 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28948, sync = True, waitForSettling = True)
17-03-18 01:56:27.233 -07 000000610 INF: Z Motor: Moving to -0.132515 mm, started at -0.139410 mm, distance = 6.89 um
17-03-18 01:56:27.233 -07 000000610 INF: FPGA: Xmit ZDACW 28948\n [Z Motor]
17-03-18 01:56:27.233 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 01:56:27.243 -07 000000610 INF: FPGA: 'ZDACW 28948' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:56:27.243 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:56:27.243 -07 000000461 INF: FPGA: Recv ZDACR 28948
17-03-18 01:56:27.253 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:27.253 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:56:27.403 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:27.403 -07 000000461 INF: FPGA: Recv ZSGSRD 29916
17-03-18 01:56:27.413 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:56:27.413 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:27.413 -07 000000606 INF: FPGA: Recv ZSGSRD 29917
17-03-18 01:56:27.423 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:27.423 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:27.423 -07 000000608 INF: FPGA: Recv ZSGSRD 29913
17-03-18 01:56:27.433 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:27.433 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:27.433 -07 000000502 INF: FPGA: Recv ZSGSRD 29922
17-03-18 01:56:27.443 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:27.443 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:27.443 -07 000000561 INF: FPGA: Recv ZSGSRD 29917
17-03-18 01:56:27.453 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:27.453 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:27.453 -07 000000606 INF: FPGA: Recv ZSGSRD 29919
17-03-18 01:56:27.463 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:27.463 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:27.463 -07 000000561 INF: FPGA: Recv ZSGSRD 29920
17-03-18 01:56:27.473 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:27.473 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:27.473 -07 000000461 INF: FPGA: Recv ZSGSRD 29918
17-03-18 01:56:27.483 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:27.483 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:27.483 -07 000000608 INF: FPGA: Recv ZSGSRD 29916
17-03-18 01:56:27.493 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:27.493 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:27.493 -07 000000502 INF: FPGA: Recv ZSGSRD 29916
17-03-18 01:56:27.502 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:27.502 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:56:27.502 -07 000000502 INF: FPGA: Recv ZPIEZORD 25413
17-03-18 01:56:27.512 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:27.512 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.417 V. Piezo Error = -9.9 V.
17-03-18 01:56:27.512 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29917 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29917 (-131.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29913 (-131.7 uncal um), Max = 29922 (-131.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:56:27.512 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29917, posNoise = 5, negNoise = 4
17-03-18 01:56:27.512 -07 000000610 INF: Z Motor: After move to -0.132515, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:56:27.512 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:56:27.512 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:56:27.512 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:56:27.512 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:56:27.512 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:56:27.512 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:56:27.512 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:56:27.512 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:56:27.512 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:56:27.512 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:56:27.512 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:56:27.512 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:56:27.512 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:56:27.522 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:56:27.522 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:56:27.522 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 01:56:27.522 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:56:27.532 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 01:56:27.532 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:56:27.532 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:56:27.532 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 01:56:27.532 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 29125 150\n [Camera]
17-03-18 01:56:27.732 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:56:28.132 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:56:28.132 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:56:28.132 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:56:28.132 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:56:28.132 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:56:28.132 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:56:28.132 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:56:28.132 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:56:28.132 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:56:28.132 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:56:28.322 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29125 777
17-03-18 01:56:28.472 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:56:28.582 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 447 ms.
17-03-18 01:56:28.582 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 447 ms.
17-03-18 01:56:28.582 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:28.582 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 449 ms.
17-03-18 01:56:28.582 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 450 ms.
17-03-18 01:56:28.582 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:28.582 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:56:28.582 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:56:28.582 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 455 ms.
17-03-18 01:56:28.592 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 459 ms.
17-03-18 01:56:28.662 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:56:28.662 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:56:28.662 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:56:28.662 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:56:28.662 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:56:28.662 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:56:28.672 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:56:28.672 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:56:28.672 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:56:28.672 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:56:28.852 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:56:28.852 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:56:28.852 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 29125 150' command took 2 ms to send, 1304 ms to get response, and 1314 ms overall
17-03-18 01:56:28.852 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:56:28.852 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.132516506656198. ------
17-03-18 01:56:28.852 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:56:28.852 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13920 mm
17-03-18 01:56:28.852 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:56:28.862 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 01:56:28.862 -07 000000608 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-18 01:56:28.862 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:29.071 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 01:56:29.071 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:56:29.071 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:29.071 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:56:29.071 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:56:29.071 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:29.071 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:56:29.071 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 01:56:29.071 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:56:29.081 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 01:56:29.081 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 30408, sync = True, waitForSettling = False)
17-03-18 01:56:29.081 -07 000000461 INF: Z Motor: Moving to -0.139199 mm, started at -0.132517 mm, distance = -6.68 um
17-03-18 01:56:29.081 -07 000000461 INF: FPGA: Xmit ZDACW 30408\n [Z Motor]
17-03-18 01:56:29.091 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:56:29.091 -07 000000561 INF: FPGA: Recv YRDPOS 124382
17-03-18 01:56:29.091 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 234 ms to get response, and 235 ms overall
17-03-18 01:56:29.091 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 224 ms to get response, and 230 ms overall
17-03-18 01:56:29.091 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 01:56:29.091 -07 000000461 INF: FPGA: 'ZDACW 30408' command took 0 ms to send, 5 ms to get response, and 7 ms overall
17-03-18 01:56:29.091 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:56:29.091 -07 000000608 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:29.091 -07 000000561 INF: FPGA: Recv ZDACR 30408
17-03-18 01:56:29.101 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:56:29.101 -07 000000461 INF: Z Motor: MoveAbsStepped took 12 ms (did NOT wait for settling yet))
17-03-18 01:56:29.101 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:56:29.101 -07 000000608 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:56:29.101 -07 000000608 INF: Y Motor: Moving 1343 steps-20
17-03-18 01:56:29.111 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:56:29.301 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:56:29.301 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 207 ms overall
17-03-18 01:56:29.491 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 01:56:29.491 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 371 ms to get response, and 389 ms overall
17-03-18 01:56:29.531 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:29.531 -07 000000502 INF: FPGA: Recv YRDPOS 126082
17-03-18 01:56:29.541 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:56:29.541 -07 000000608 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:29.541 -07 000000608 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 01:56:29.541 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.840 mm, average velocity = 2.153 mm/sec
17-03-18 01:56:30.490 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:30.490 -07 000000502 INF: FPGA: Recv YRDPOS 126083
17-03-18 01:56:30.500 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:56:30.500 -07 000000608 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:30.520 -07 000000608 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:56:30.520 -07 000000608 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:56:30.520 -07 000000608 INF: Y Motor: Moved to 61.5640 after 1663 ms (table move)
17-03-18 01:56:30.530 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139199 mm (DAC = 30408)
17-03-18 01:56:30.530 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:30.530 -07 000000626 INF: FPGA: Recv ZSGSRD 30965
17-03-18 01:56:30.540 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:30.550 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:30.550 -07 000000438 INF: FPGA: Recv ZSGSRD 30962
17-03-18 01:56:30.560 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:56:30.560 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:30.560 -07 000000585 INF: FPGA: Recv ZSGSRD 30957
17-03-18 01:56:30.570 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:30.570 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:30.570 -07 000000438 INF: FPGA: Recv ZSGSRD 30952
17-03-18 01:56:30.580 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:30.580 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:30.580 -07 000000461 INF: FPGA: Recv ZSGSRD 30953
17-03-18 01:56:30.590 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:30.590 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:30.590 -07 000000461 INF: FPGA: Recv ZSGSRD 30958
17-03-18 01:56:30.600 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:30.600 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:30.600 -07 000000561 INF: FPGA: Recv ZSGSRD 30966
17-03-18 01:56:30.610 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:30.610 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:30.610 -07 000000438 INF: FPGA: Recv ZSGSRD 30966
17-03-18 01:56:30.620 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:30.620 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:30.620 -07 000000561 INF: FPGA: Recv ZSGSRD 30957
17-03-18 01:56:30.630 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:30.630 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:30.630 -07 000000438 INF: FPGA: Recv ZSGSRD 30958
17-03-18 01:56:30.640 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:30.640 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:56:30.640 -07 000000561 INF: FPGA: Recv ZPIEZORD 26780
17-03-18 01:56:30.650 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:30.650 -07 000000606 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.640 V. Piezo Error = -9.2 V.
17-03-18 01:56:30.650 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30959 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30958 (-138.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30952 (-138.4 uncal um), Max = 30966 (-138.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:56:30.650 -07 000000606 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30959, posNoise = 7, negNoise = 7
17-03-18 01:56:30.650 -07 000000606 INF: Z Motor: After move to -0.139199, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:56:30.650 -07 000000606 INF: Z Motor: Settle wait time = 1442 ms, measure time = 120 ms (allowed 150 ms), total time = 1562 ms
17-03-18 01:56:30.650 -07 000000606 INF: Z Motor: Waiting extra 30 ms after reading position to reach expected total of 150 ms
17-03-18 01:56:30.680 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1820 ms
17-03-18 01:56:30.680 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:56:30.680 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:56:30.680 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:56:30.680 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:56:30.680 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:56:30.680 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:56:30.680 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:56:30.680 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:56:30.680 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:56:30.690 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:56:30.690 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:56:30.700 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 01:56:30.700 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 01:56:30.700 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:56:30.750 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:56:31.050 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:56:31.050 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:56:31.050 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:56:31.050 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 01:56:31.090 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:56:31.090 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 01:56:31.090 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 388 ms overall
17-03-18 01:56:31.160 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:56:31.160 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:31.170 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:56:31.170 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:56:31.190 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:56:31.190 -07 000000608 INF: Autofocus start
17-03-18 01:56:31.190 -07 000000608 INF: MeasureProfile start
17-03-18 01:56:31.190 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:56:31.200 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:56:31.200 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:56:31.210 -07 000000608 INF: MeasureProfile done
17-03-18 01:56:31.210 -07 000000608 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:56:31.210 -07 000000608 INF: Autofocus finished
17-03-18 01:56:31.400 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:56:31.400 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:56:31.400 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139210535707912. ----------
17-03-18 01:56:31.400 -07 000000610 INF: Cycle	93	Tile	3	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:56:31.400 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28915, sync = True, waitForSettling = True)
17-03-18 01:56:31.400 -07 000000610 INF: Z Motor: Moving to -0.132364 mm, started at -0.139211 mm, distance = 6.85 um
17-03-18 01:56:31.410 -07 000000610 INF: FPGA: Xmit ZDACW 28915\n [Z Motor]
17-03-18 01:56:31.410 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 01:56:31.420 -07 000000610 INF: FPGA: 'ZDACW 28915' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:31.420 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:56:31.420 -07 000000438 INF: FPGA: Recv ZDACR 28915
17-03-18 01:56:31.430 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:31.430 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:56:31.580 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:31.580 -07 000000626 INF: FPGA: Recv ZSGSRD 29892
17-03-18 01:56:31.590 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:56:31.590 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:31.590 -07 000000438 INF: FPGA: Recv ZSGSRD 29899
17-03-18 01:56:31.600 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:31.600 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:31.600 -07 000000561 INF: FPGA: Recv ZSGSRD 29890
17-03-18 01:56:31.610 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:31.610 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:31.610 -07 000000461 INF: FPGA: Recv ZSGSRD 29896
17-03-18 01:56:31.620 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:31.620 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:31.620 -07 000000561 INF: FPGA: Recv ZSGSRD 29892
17-03-18 01:56:31.630 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:31.630 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:31.630 -07 000000626 INF: FPGA: Recv ZSGSRD 29896
17-03-18 01:56:31.640 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:31.640 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:31.640 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:56:31.640 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:56:31.640 -07 000000438 INF: FPGA: Recv ZSGSRD 29894
17-03-18 01:56:31.650 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:31.650 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:31.650 -07 000000502 INF: FPGA: Recv ZSGSRD 29886
17-03-18 01:56:31.660 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:31.660 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:31.660 -07 000000561 INF: FPGA: Recv ZSGSRD 29898
17-03-18 01:56:31.670 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:31.670 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:31.670 -07 000000629 INF: FPGA: Recv ZSGSRD 29896
17-03-18 01:56:31.680 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:31.680 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:56:31.680 -07 000000444 INF: FPGA: Recv ZPIEZORD 25410
17-03-18 01:56:31.690 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:31.690 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.412 V. Piezo Error = -9.8 V.
17-03-18 01:56:31.690 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29894 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29895 (-131.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29886 (-131.5 uncal um), Max = 29899 (-131.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:56:31.690 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29894, posNoise = 5, negNoise = 8
17-03-18 01:56:31.690 -07 000000610 INF: Z Motor: After move to -0.132364, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:56:31.690 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:56:31.690 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:56:31.690 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:56:31.690 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:56:31.690 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:56:31.690 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:56:31.690 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:56:31.690 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:56:31.690 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:56:31.690 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:56:31.690 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:56:31.690 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:56:31.700 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:56:31.700 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:56:31.700 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:56:31.700 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:56:31.700 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:56:31.710 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:56:31.710 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 01:56:31.710 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:56:31.710 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 01:56:31.710 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 29092 150\n [Camera]
17-03-18 01:56:31.910 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:56:32.299 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:56:32.299 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:56:32.299 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:56:32.299 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:56:32.299 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 01:56:32.309 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:56:32.309 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:56:32.309 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:56:32.309 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:56:32.309 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 01:56:32.419 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.014009,
17-03-18 01:56:32.489 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29092 777
17-03-18 01:56:32.639 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:56:32.699 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 01:56:32.699 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:56:32.699 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:32.699 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:56:32.699 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:56:32.699 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:32.709 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:56:32.709 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:56:32.709 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:56:32.709 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 01:56:32.829 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:56:32.829 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:56:32.829 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:56:32.829 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:56:32.829 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 01:56:32.839 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:56:32.839 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:56:32.839 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:56:32.839 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:56:32.839 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 01:56:33.019 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 01:56:33.019 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:56:33.019 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 29092 150' command took 2 ms to send, 1309 ms to get response, and 1315 ms overall
17-03-18 01:56:33.029 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:56:33.029 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132368749776937. ------
17-03-18 01:56:33.029 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:56:33.029 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13873 mm
17-03-18 01:56:33.029 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:56:33.029 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 01:56:33.029 -07 000000502 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-18 01:56:33.039 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:33.229 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 01:56:33.229 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 01:56:33.229 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:33.229 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:56:33.229 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:56:33.229 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:33.239 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:56:33.239 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:56:33.239 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 01:56:33.239 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 01:56:33.249 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 30306, sync = True, waitForSettling = False)
17-03-18 01:56:33.249 -07 000000444 INF: Z Motor: Moving to -0.138732 mm, started at -0.132369 mm, distance = -6.36 um
17-03-18 01:56:33.249 -07 000000444 INF: FPGA: Xmit ZDACW 30306\n [Z Motor]
17-03-18 01:56:33.249 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:56:33.249 -07 000000626 INF: FPGA: Recv YRDPOS 126083
17-03-18 01:56:33.249 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 217 ms to get response, and 223 ms overall
17-03-18 01:56:33.249 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 207 ms to get response, and 220 ms overall
17-03-18 01:56:33.249 -07 000000502 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:33.249 -07 000000502 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:56:33.249 -07 000000502 INF: Y Motor: Moving 1342 steps-19
17-03-18 01:56:33.249 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:56:33.259 -07 000000444 INF: FPGA: 'ZDACW 30306' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:56:33.259 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:56:33.269 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:56:33.279 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:56:33.279 -07 000000626 INF: FPGA: Recv ZDACR 30306
17-03-18 01:56:33.289 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:56:33.289 -07 000000444 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 01:56:33.459 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:56:33.459 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 205 ms overall
17-03-18 01:56:33.638 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 01:56:33.638 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 389 ms overall
17-03-18 01:56:33.688 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:33.688 -07 000000626 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:56:33.698 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:56:33.698 -07 000000502 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:33.698 -07 000000502 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 01:56:33.698 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.839 mm, average velocity = 2.156 mm/sec
17-03-18 01:56:34.648 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:34.648 -07 000000561 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:56:34.658 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:34.658 -07 000000502 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:34.678 -07 000000502 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:56:34.678 -07 000000502 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:56:34.678 -07 000000502 INF: Y Motor: Moved to 62.3955 after 1648 ms (table move)
17-03-18 01:56:34.678 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138732 mm (DAC = 30306)
17-03-18 01:56:34.678 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:34.688 -07 000000561 INF: FPGA: Recv ZSGSRD 30888
17-03-18 01:56:34.688 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 3 ms overall
17-03-18 01:56:34.688 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:34.688 -07 000000502 INF: FPGA: Recv ZSGSRD 30893
17-03-18 01:56:34.698 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:56:34.698 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:34.698 -07 000000444 INF: FPGA: Recv ZSGSRD 30895
17-03-18 01:56:34.708 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:34.708 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:34.708 -07 000000444 INF: FPGA: Recv ZSGSRD 30890
17-03-18 01:56:34.718 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:34.718 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:34.718 -07 000000561 INF: FPGA: Recv ZSGSRD 30890
17-03-18 01:56:34.728 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:34.728 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:34.728 -07 000000502 INF: FPGA: Recv ZSGSRD 30884
17-03-18 01:56:34.738 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:34.738 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:34.738 -07 000000626 INF: FPGA: Recv ZSGSRD 30883
17-03-18 01:56:34.748 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:34.748 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:34.748 -07 000000561 INF: FPGA: Recv ZSGSRD 30884
17-03-18 01:56:34.758 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:34.758 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:34.758 -07 000000561 INF: FPGA: Recv ZSGSRD 30886
17-03-18 01:56:34.768 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:34.768 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:34.768 -07 000000444 INF: FPGA: Recv ZSGSRD 30891
17-03-18 01:56:34.778 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:34.778 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:56:34.778 -07 000000502 INF: FPGA: Recv ZPIEZORD 26755
17-03-18 01:56:34.788 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:34.788 -07 000000585 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.624 V. Piezo Error = -9.1 V.
17-03-18 01:56:34.788 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30888 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30889 (-138.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30883 (-137.9 uncal um), Max = 30895 (-138.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:56:34.788 -07 000000585 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30888, posNoise = 7, negNoise = 5
17-03-18 01:56:34.788 -07 000000585 INF: Z Motor: After move to -0.138732, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:56:34.788 -07 000000585 INF: Z Motor: Settle wait time = 1433 ms, measure time = 101 ms (allowed 150 ms), total time = 1534 ms
17-03-18 01:56:34.788 -07 000000585 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 01:56:34.838 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1805 ms
17-03-18 01:56:34.838 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:56:34.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:56:34.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:56:34.838 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:56:34.838 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:56:34.838 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:56:34.838 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:56:34.838 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:56:34.838 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:56:34.848 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:56:34.848 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:56:34.858 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:56:34.858 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:56:34.858 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:56:34.908 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-18 01:56:35.207 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 01:56:35.207 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 01:56:35.207 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:56:35.207 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1170533816, 0x0, 559484976) start.
17-03-18 01:56:35.247 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:56:35.247 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 01:56:35.247 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 01:56:35.327 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1170533816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 01:56:35.327 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:35.327 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:56:35.327 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 01:56:35.347 -07 000000626 INF: Autofocus start
17-03-18 01:56:35.347 -07 000000626 INF: MeasureProfile start
17-03-18 01:56:35.347 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:56:35.347 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:56:35.357 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:56:35.357 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:56:35.357 -07 000000626 INF: MeasureProfile done
17-03-18 01:56:35.357 -07 000000626 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:56:35.357 -07 000000626 INF: Autofocus finished
17-03-18 01:56:35.557 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:56:35.557 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:56:35.557 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.138754416645847. ----------
17-03-18 01:56:35.557 -07 000000610 INF: Cycle	93	Tile	4	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:56:35.567 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28831, sync = True, waitForSettling = True)
17-03-18 01:56:35.567 -07 000000610 INF: Z Motor: Moving to -0.131980 mm, started at -0.138754 mm, distance = 6.77 um
17-03-18 01:56:35.567 -07 000000610 INF: FPGA: Xmit ZDACW 28831\n [Z Motor]
17-03-18 01:56:35.567 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 01:56:35.577 -07 000000610 INF: FPGA: 'ZDACW 28831' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:56:35.577 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:56:35.577 -07 000000444 INF: FPGA: Recv ZDACR 28831
17-03-18 01:56:35.587 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:35.587 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:56:35.737 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:35.737 -07 000000561 INF: FPGA: Recv ZSGSRD 29834
17-03-18 01:56:35.747 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:56:35.747 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:35.747 -07 000000611 INF: FPGA: Recv ZSGSRD 29839
17-03-18 01:56:35.757 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:35.757 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:35.757 -07 000000561 INF: FPGA: Recv ZSGSRD 29831
17-03-18 01:56:35.767 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:35.767 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:35.767 -07 000000467 INF: FPGA: Recv ZSGSRD 29833
17-03-18 01:56:35.777 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:35.777 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:35.777 -07 000000561 INF: FPGA: Recv ZSGSRD 29837
17-03-18 01:56:35.787 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:35.787 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:35.787 -07 000000467 INF: FPGA: Recv ZSGSRD 29833
17-03-18 01:56:35.797 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:35.797 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:35.797 -07 000000561 INF: FPGA: Recv ZSGSRD 29836
17-03-18 01:56:35.807 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:35.807 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:35.807 -07 000000467 INF: FPGA: Recv ZSGSRD 29832
17-03-18 01:56:35.817 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:35.817 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:35.817 -07 000000455 INF: FPGA: Recv ZSGSRD 29835
17-03-18 01:56:35.827 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:35.827 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:35.827 -07 000000467 INF: FPGA: Recv ZSGSRD 29832
17-03-18 01:56:35.837 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:35.837 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:56:35.837 -07 000000455 INF: FPGA: Recv ZPIEZORD 25368
17-03-18 01:56:35.847 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:35.847 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.399 V. Piezo Error = -9.8 V.
17-03-18 01:56:35.847 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29834 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29834 (-131.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29831 (-131.2 uncal um), Max = 29839 (-131.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:56:35.847 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29834, posNoise = 5, negNoise = 3
17-03-18 01:56:35.847 -07 000000610 INF: Z Motor: After move to -0.131980, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:56:35.847 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:56:35.847 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:56:35.847 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:56:35.847 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:56:35.847 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:56:35.847 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:56:35.847 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:56:35.847 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:56:35.847 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:56:35.847 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:56:35.847 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:56:35.847 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:56:35.847 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:56:35.857 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:56:35.857 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:56:35.857 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:56:35.857 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:56:35.857 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:56:35.857 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 01:56:35.867 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:56:35.867 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:56:35.867 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 29007 150\n [Camera]
17-03-18 01:56:36.067 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:56:36.456 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:56:36.456 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:56:36.456 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:56:36.456 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:56:36.456 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 01:56:36.456 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:56:36.456 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:56:36.456 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:56:36.456 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:56:36.456 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 01:56:36.636 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:56:36.636 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:56:36.646 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29007 777
17-03-18 01:56:36.796 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:56:36.846 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 01:56:36.846 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 01:56:36.846 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:36.846 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:56:36.846 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 01:56:36.846 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 01:56:36.846 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:36.846 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:56:36.846 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:56:36.856 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:56:36.986 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:56:36.986 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:56:36.986 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:56:36.986 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:56:36.986 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 01:56:36.986 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1116
17-03-18 01:56:36.986 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1116
17-03-18 01:56:36.986 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:56:36.986 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:56:36.986 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 01:56:37.176 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:56:37.176 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:56:37.176 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 29007 150' command took 2 ms to send, 1307 ms to get response, and 1314 ms overall
17-03-18 01:56:37.176 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:56:37.176 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.131983297048431. ------
17-03-18 01:56:37.186 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:56:37.186 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13868 mm
17-03-18 01:56:37.186 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:56:37.186 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 01:56:37.186 -07 000000569 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 01:56:37.186 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 30294, sync = True, waitForSettling = False)
17-03-18 01:56:37.186 -07 000000444 INF: Z Motor: Moving to -0.138677 mm, started at -0.131983 mm, distance = -6.69 um
17-03-18 01:56:37.186 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:56:37.196 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:56:37.196 -07 000000444 INF: FPGA: Xmit ZDACW 30294\n [Z Motor]
17-03-18 01:56:37.196 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 01:56:37.206 -07 000000444 INF: FPGA: 'ZDACW 30294' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:56:37.206 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:56:37.216 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:37.226 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:56:37.396 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 01:56:37.396 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:56:37.396 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:37.396 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 01:56:37.396 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:56:37.396 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:37.396 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:56:37.396 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:56:37.396 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 01:56:37.406 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 01:56:37.416 -07 000000561 INF: FPGA: Recv YRDPOS 127786
17-03-18 01:56:37.416 -07 000000561 INF: FPGA: Recv ZDACR 30294
17-03-18 01:56:37.416 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 192 ms to get response, and 224 ms overall
17-03-18 01:56:37.416 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 182 ms to get response, and 212 ms overall
17-03-18 01:56:37.416 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:56:37.416 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 203 ms to get response, and 222 ms overall
17-03-18 01:56:37.416 -07 000000444 INF: Z Motor: MoveAbsStepped took 225 ms (did NOT wait for settling yet))
17-03-18 01:56:37.416 -07 000000569 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:37.416 -07 000000569 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:56:37.416 -07 000000569 INF: Y Motor: Moving 1339 steps-15
17-03-18 01:56:37.416 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:56:37.776 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.008536,
17-03-18 01:56:37.796 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 01:56:37.796 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 376 ms to get response, and 380 ms overall
17-03-18 01:56:37.846 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:37.846 -07 000000467 INF: FPGA: Recv YRDPOS 129483
17-03-18 01:56:37.856 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:37.856 -07 000000569 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:37.856 -07 000000569 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 01:56:37.856 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.837 mm, average velocity = 2.191 mm/sec
17-03-18 01:56:38.805 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:38.805 -07 000000444 INF: FPGA: Recv YRDPOS 129483
17-03-18 01:56:38.815 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:56:38.815 -07 000000569 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:38.835 -07 000000569 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:56:38.835 -07 000000569 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:56:38.835 -07 000000569 INF: Y Motor: Moved to 63.2241 after 1649 ms (table move)
17-03-18 01:56:38.845 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138677 mm (DAC = 30294)
17-03-18 01:56:38.845 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:38.845 -07 000000467 INF: FPGA: Recv ZSGSRD 30878
17-03-18 01:56:38.855 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:38.855 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:38.855 -07 000000467 INF: FPGA: Recv ZSGSRD 30883
17-03-18 01:56:38.865 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:38.865 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:38.865 -07 000000569 INF: FPGA: Recv ZSGSRD 30875
17-03-18 01:56:38.875 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:38.875 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:38.875 -07 000000444 INF: FPGA: Recv ZSGSRD 30882
17-03-18 01:56:38.885 -07 000000502 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:38.885 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:38.885 -07 000000569 INF: FPGA: Recv ZSGSRD 30884
17-03-18 01:56:38.895 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:38.895 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:38.895 -07 000000467 INF: FPGA: Recv ZSGSRD 30870
17-03-18 01:56:38.905 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:38.905 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:38.905 -07 000000561 INF: FPGA: Recv ZSGSRD 30874
17-03-18 01:56:38.915 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:38.915 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:38.915 -07 000000467 INF: FPGA: Recv ZSGSRD 30873
17-03-18 01:56:38.925 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:38.925 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:38.925 -07 000000444 INF: FPGA: Recv ZSGSRD 30882
17-03-18 01:56:38.935 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:38.935 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:38.935 -07 000000569 INF: FPGA: Recv ZSGSRD 30881
17-03-18 01:56:38.945 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:38.945 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:56:38.945 -07 000000444 INF: FPGA: Recv ZPIEZORD 26755
17-03-18 01:56:38.955 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:38.955 -07 000000502 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.623 V. Piezo Error = -9.1 V.
17-03-18 01:56:38.955 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30878 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30880 (-137.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30870 (-137.8 uncal um), Max = 30884 (-137.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:56:38.955 -07 000000502 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30878, posNoise = 6, negNoise = 8
17-03-18 01:56:38.955 -07 000000502 INF: Z Motor: After move to -0.138677, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:56:38.955 -07 000000502 INF: Z Motor: Settle wait time = 1652 ms, measure time = 110 ms (allowed 150 ms), total time = 1762 ms
17-03-18 01:56:38.955 -07 000000502 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:56:38.995 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1804 ms
17-03-18 01:56:38.995 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:56:38.995 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:56:38.995 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:56:38.995 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:56:38.995 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:56:38.995 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:56:38.995 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:56:38.995 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:56:38.995 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:56:39.005 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:56:39.005 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:56:39.015 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 01:56:39.015 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:56:39.015 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:56:39.055 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:56:39.355 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:56:39.355 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:56:39.365 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:56:39.365 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 01:56:39.395 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:56:39.395 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 01:56:39.395 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 01:56:39.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 01:56:39.474 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:39.474 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:56:39.474 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 01:56:39.494 -07 000000606 INF: Autofocus start
17-03-18 01:56:39.494 -07 000000606 INF: MeasureProfile start
17-03-18 01:56:39.494 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:56:39.494 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:56:39.504 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:56:39.504 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:56:39.504 -07 000000606 INF: MeasureProfile done
17-03-18 01:56:39.504 -07 000000606 INF: X=32  Z correction [um]=0.1299841
17-03-18 01:56:39.504 -07 000000606 INF: Autofocus finished
17-03-18 01:56:39.704 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:56:39.704 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 198 ms to get response, and 202 ms overall
17-03-18 01:56:39.714 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.13869017452443. ----------
17-03-18 01:56:39.714 -07 000000610 INF: Cycle	93	Tile	5	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:56:39.714 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28835, sync = True, waitForSettling = True)
17-03-18 01:56:39.714 -07 000000610 INF: Z Motor: Moving to -0.131998 mm, started at -0.138690 mm, distance = 6.69 um
17-03-18 01:56:39.714 -07 000000610 INF: FPGA: Xmit ZDACW 28835\n [Z Motor]
17-03-18 01:56:39.724 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 01:56:39.724 -07 000000610 INF: FPGA: 'ZDACW 28835' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:56:39.724 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:56:39.724 -07 000000606 INF: FPGA: Recv ZDACR 28835
17-03-18 01:56:39.734 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:39.734 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:56:39.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:39.884 -07 000000444 INF: FPGA: Recv ZSGSRD 29835
17-03-18 01:56:39.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:56:39.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:39.894 -07 000000569 INF: FPGA: Recv ZSGSRD 29840
17-03-18 01:56:39.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:39.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:39.904 -07 000000438 INF: FPGA: Recv ZSGSRD 29834
17-03-18 01:56:39.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:39.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:39.914 -07 000000606 INF: FPGA: Recv ZSGSRD 29835
17-03-18 01:56:39.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:39.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:39.924 -07 000000444 INF: FPGA: Recv ZSGSRD 29839
17-03-18 01:56:39.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:39.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:39.934 -07 000000569 INF: FPGA: Recv ZSGSRD 29837
17-03-18 01:56:39.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:39.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:39.944 -07 000000467 INF: FPGA: Recv ZSGSRD 29845
17-03-18 01:56:39.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:39.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:39.954 -07 000000629 INF: FPGA: Recv ZSGSRD 29838
17-03-18 01:56:39.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:39.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:39.964 -07 000000444 INF: FPGA: Recv ZSGSRD 29837
17-03-18 01:56:39.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:39.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:39.974 -07 000000585 INF: FPGA: Recv ZSGSRD 29845
17-03-18 01:56:39.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:39.984 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:56:39.984 -07 000000438 INF: FPGA: Recv ZPIEZORD 25387
17-03-18 01:56:39.994 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:39.994 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.400 V. Piezo Error = -9.8 V.
17-03-18 01:56:39.994 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29838 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29838 (-131.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29834 (-131.2 uncal um), Max = 29845 (-131.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:56:39.994 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29838, posNoise = 7, negNoise = 4
17-03-18 01:56:39.994 -07 000000610 INF: Z Motor: After move to -0.131998, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:56:39.994 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 01:56:39.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:56:39.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:56:39.994 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:56:39.994 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:56:39.994 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:56:39.994 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:56:39.994 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:56:39.994 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:56:39.994 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 01:56:39.994 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:56:39.994 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:56:39.994 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:56:40.004 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:56:40.004 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:56:40.004 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:56:40.004 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:56:40.014 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:56:40.014 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:56:40.014 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:56:40.014 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:56:40.014 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 29012 150\n [Camera]
17-03-18 01:56:40.214 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:56:40.604 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 01:56:40.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 01:56:40.604 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:56:40.604 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:56:40.604 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 01:56:40.614 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 01:56:40.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 01:56:40.614 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:56:40.614 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:56:40.614 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 01:56:40.794 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29012 777
17-03-18 01:56:40.943 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:56:41.003 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:56:41.003 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:56:41.003 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:41.003 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:56:41.003 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:56:41.013 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:56:41.013 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:56:41.013 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:41.013 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:56:41.023 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:56:41.133 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:56:41.133 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:56:41.133 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:56:41.133 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:56:41.133 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 01:56:41.133 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:56:41.133 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:56:41.143 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:56:41.143 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:56:41.143 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:56:41.323 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:56:41.323 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:56:41.323 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 29012 150' command took 2 ms to send, 1308 ms to get response, and 1315 ms overall
17-03-18 01:56:41.333 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:56:41.333 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.132008993896998. ------
17-03-18 01:56:41.333 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:56:41.333 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13848 mm
17-03-18 01:56:41.333 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:56:41.333 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 01:56:41.333 -07 000000461 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 01:56:41.333 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 30251, sync = True, waitForSettling = False)
17-03-18 01:56:41.333 -07 000000444 INF: Z Motor: Moving to -0.138480 mm, started at -0.132009 mm, distance = -6.47 um
17-03-18 01:56:41.333 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:56:41.343 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:56:41.343 -07 000000444 INF: FPGA: Xmit ZDACW 30251\n [Z Motor]
17-03-18 01:56:41.343 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 01:56:41.353 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:41.353 -07 000000444 INF: FPGA: 'ZDACW 30251' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:56:41.353 -07 000000585 INF: FPGA: Recv YRDPOS 129484
17-03-18 01:56:41.363 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:56:41.363 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:56:41.363 -07 000000461 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:41.363 -07 000000461 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:56:41.363 -07 000000461 INF: Y Motor: Moving 1341 steps-17
17-03-18 01:56:41.373 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:56:41.373 -07 000000569 INF: FPGA: Recv ZDACR 30251
17-03-18 01:56:41.383 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:56:41.383 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:56:41.383 -07 000000444 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 01:56:41.533 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 01:56:41.533 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:56:41.533 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:41.543 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:56:41.543 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:56:41.543 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:41.543 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:56:41.543 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:56:41.543 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 01:56:41.553 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:56:41.563 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:56:41.563 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 225 ms overall
17-03-18 01:56:41.633 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:56:41.633 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:56:41.753 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 01:56:41.753 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 393 ms overall
17-03-18 01:56:41.803 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:41.803 -07 000000502 INF: FPGA: Recv YRDPOS 131188
17-03-18 01:56:41.813 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:56:41.813 -07 000000461 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:41.813 -07 000000461 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-18 01:56:41.813 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.838 mm, average velocity = 2.128 mm/sec
17-03-18 01:56:42.762 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:42.762 -07 000000569 INF: FPGA: Recv YRDPOS 131189
17-03-18 01:56:42.772 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:42.772 -07 000000461 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:42.792 -07 000000461 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:56:42.792 -07 000000461 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:56:42.792 -07 000000461 INF: Y Motor: Moved to 64.0571 after 1456 ms (table move)
17-03-18 01:56:42.792 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138480 mm (DAC = 30251)
17-03-18 01:56:42.792 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:42.802 -07 000000629 INF: FPGA: Recv ZSGSRD 30844
17-03-18 01:56:42.802 -07 000000626 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:56:42.802 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:42.802 -07 000000461 INF: FPGA: Recv ZSGSRD 30841
17-03-18 01:56:42.812 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:42.822 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:42.822 -07 000000569 INF: FPGA: Recv ZSGSRD 30842
17-03-18 01:56:42.832 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:56:42.832 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:42.832 -07 000000569 INF: FPGA: Recv ZSGSRD 30844
17-03-18 01:56:42.842 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:42.842 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:42.842 -07 000000502 INF: FPGA: Recv ZSGSRD 30847
17-03-18 01:56:42.852 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:42.852 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:42.852 -07 000000629 INF: FPGA: Recv ZSGSRD 30850
17-03-18 01:56:42.862 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:42.862 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:42.862 -07 000000569 INF: FPGA: Recv ZSGSRD 30847
17-03-18 01:56:42.872 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:42.872 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:42.872 -07 000000629 INF: FPGA: Recv ZSGSRD 30847
17-03-18 01:56:42.882 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:42.882 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:42.882 -07 000000461 INF: FPGA: Recv ZSGSRD 30842
17-03-18 01:56:42.892 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:42.892 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:42.892 -07 000000502 INF: FPGA: Recv ZSGSRD 30849
17-03-18 01:56:42.902 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:42.902 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:56:42.902 -07 000000569 INF: FPGA: Recv ZPIEZORD 26727
17-03-18 01:56:42.912 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:42.912 -07 000000626 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.616 V. Piezo Error = -9.1 V.
17-03-18 01:56:42.912 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30845 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30846 (-137.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30841 (-137.7 uncal um), Max = 30850 (-137.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:56:42.912 -07 000000626 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30845, posNoise = 5, negNoise = 4
17-03-18 01:56:42.912 -07 000000626 INF: Z Motor: After move to -0.138480, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:56:42.912 -07 000000626 INF: Z Motor: Settle wait time = 1459 ms, measure time = 114 ms (allowed 150 ms), total time = 1573 ms
17-03-18 01:56:42.912 -07 000000626 INF: Z Motor: Waiting extra 36 ms after reading position to reach expected total of 150 ms
17-03-18 01:56:42.952 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 01:56:42.952 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:56:42.952 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:56:42.952 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:56:42.952 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:56:42.952 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:56:42.952 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:56:42.952 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:56:42.952 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:56:42.952 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:56:42.962 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:56:42.962 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:56:42.972 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:56:42.972 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:56:42.972 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:56:43.022 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:56:43.132 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 3.996267,
17-03-18 01:56:43.322 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:56:43.322 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:56:43.322 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:56:43.322 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-18 01:56:43.362 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:56:43.362 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 01:56:43.362 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 386 ms to get response, and 388 ms overall
17-03-18 01:56:43.442 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 01:56:43.442 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:43.442 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:56:43.442 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 01:56:43.462 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:56:43.462 -07 000000502 INF: Autofocus start
17-03-18 01:56:43.462 -07 000000502 INF: MeasureProfile start
17-03-18 01:56:43.462 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:56:43.472 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:56:43.472 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:56:43.482 -07 000000502 INF: MeasureProfile done
17-03-18 01:56:43.482 -07 000000502 INF: X=-64  Z correction [um]=-0.3149434
17-03-18 01:56:43.482 -07 000000502 INF: Autofocus finished
17-03-18 01:56:43.672 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:56:43.672 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:56:43.672 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138478175523752. ----------
17-03-18 01:56:43.682 -07 000000610 INF: Cycle	93	Tile	6	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:56:43.682 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28694, sync = True, waitForSettling = True)
17-03-18 01:56:43.682 -07 000000610 INF: Z Motor: Moving to -0.131353 mm, started at -0.138478 mm, distance = 7.13 um
17-03-18 01:56:43.682 -07 000000610 INF: FPGA: Xmit ZDACW 28694\n [Z Motor]
17-03-18 01:56:43.682 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 01:56:43.692 -07 000000610 INF: FPGA: 'ZDACW 28694' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:56:43.692 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:56:43.692 -07 000000461 INF: FPGA: Recv ZDACR 28694
17-03-18 01:56:43.702 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:43.702 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:56:43.852 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:43.852 -07 000000502 INF: FPGA: Recv ZSGSRD 29730
17-03-18 01:56:43.862 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:43.862 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:43.862 -07 000000626 INF: FPGA: Recv ZSGSRD 29738
17-03-18 01:56:43.872 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:43.872 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:43.872 -07 000000502 INF: FPGA: Recv ZSGSRD 29736
17-03-18 01:56:43.882 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:43.882 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:43.882 -07 000000629 INF: FPGA: Recv ZSGSRD 29736
17-03-18 01:56:43.892 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:43.892 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:43.892 -07 000000502 INF: FPGA: Recv ZSGSRD 29743
17-03-18 01:56:43.902 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:43.902 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:43.902 -07 000000629 INF: FPGA: Recv ZSGSRD 29739
17-03-18 01:56:43.911 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:43.911 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:43.911 -07 000000502 INF: FPGA: Recv ZSGSRD 29729
17-03-18 01:56:43.921 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:43.921 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:43.921 -07 000000629 INF: FPGA: Recv ZSGSRD 29736
17-03-18 01:56:43.931 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:43.931 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:43.931 -07 000000502 INF: FPGA: Recv ZSGSRD 29736
17-03-18 01:56:43.941 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:43.941 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:43.941 -07 000000629 INF: FPGA: Recv ZSGSRD 29743
17-03-18 01:56:43.951 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:43.951 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:56:43.951 -07 000000502 INF: FPGA: Recv ZPIEZORD 25306
17-03-18 01:56:43.961 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:43.961 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.378 V. Piezo Error = -9.7 V.
17-03-18 01:56:43.961 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29737 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29736 (-130.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29729 (-130.5 uncal um), Max = 29743 (-130.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:56:43.961 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29737, posNoise = 6, negNoise = 8
17-03-18 01:56:43.961 -07 000000610 INF: Z Motor: After move to -0.131353, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:56:43.961 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:56:43.961 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:56:43.961 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:56:43.961 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:56:43.961 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:56:43.961 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:56:43.961 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:56:43.961 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:56:43.961 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:56:43.961 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:56:43.961 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:56:43.961 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:56:43.961 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:56:43.971 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:56:43.971 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:56:43.971 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:56:43.971 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:56:43.981 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:56:43.981 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:56:43.981 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:56:43.981 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:56:43.981 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28871 150\n [Camera]
17-03-18 01:56:44.181 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:56:44.571 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:56:44.571 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:56:44.571 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:56:44.571 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:56:44.571 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 01:56:44.571 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:56:44.571 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:56:44.571 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:56:44.571 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:56:44.571 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 01:56:44.761 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28871 777
17-03-18 01:56:44.911 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:56:44.971 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:56:44.971 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:56:44.971 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:44.971 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:56:44.971 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:56:44.971 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:44.981 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:56:44.981 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:56:44.981 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:56:44.981 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:56:45.101 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1116
17-03-18 01:56:45.101 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1116
17-03-18 01:56:45.101 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:56:45.101 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:56:45.101 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 01:56:45.111 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1116
17-03-18 01:56:45.111 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1116
17-03-18 01:56:45.111 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:56:45.251 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:56:45.251 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 01:56:45.291 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 01:56:45.291 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:56:45.291 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28871 150' command took 2 ms to send, 1308 ms to get response, and 1314 ms overall
17-03-18 01:56:45.301 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:56:45.301 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131360148470681. ------
17-03-18 01:56:45.301 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:56:45.301 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13798 mm
17-03-18 01:56:45.301 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:56:45.301 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 01:56:45.301 -07 000000444 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 01:56:45.301 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 30142, sync = True, waitForSettling = False)
17-03-18 01:56:45.301 -07 000000467 INF: Z Motor: Moving to -0.137981 mm, started at -0.131360 mm, distance = -6.62 um
17-03-18 01:56:45.301 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:56:45.311 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:56:45.311 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:45.311 -07 000000592 INF: FPGA: Recv YRDPOS 131189
17-03-18 01:56:45.321 -07 000000467 INF: FPGA: Xmit ZDACW 30142\n [Z Motor]
17-03-18 01:56:45.321 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:56:45.321 -07 000000444 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:45.321 -07 000000444 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:56:45.321 -07 000000444 INF: Y Motor: Moving 1337 steps-12
17-03-18 01:56:45.321 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 01:56:45.331 -07 000000467 INF: FPGA: 'ZDACW 30142' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 01:56:45.331 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:56:45.341 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:56:45.351 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:56:45.351 -07 000000592 INF: FPGA: Recv ZDACR 30142
17-03-18 01:56:45.361 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:56:45.361 -07 000000467 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 01:56:45.520 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 411 ms.
17-03-18 01:56:45.520 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 01:56:45.520 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:45.520 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:56:45.520 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 418 ms.
17-03-18 01:56:45.530 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:56:45.530 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 01:56:45.640 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 01:56:45.640 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:56:45.640 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:45.640 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:56:45.650 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 544 ms.
17-03-18 01:56:45.710 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 01:56:45.710 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:56:45.760 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:45.760 -07 000000592 INF: FPGA: Recv YRDPOS 132872
17-03-18 01:56:45.770 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:45.770 -07 000000444 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:45.770 -07 000000444 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:56:45.770 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-18 01:56:46.630 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:56:46.630 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:56:46.720 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:46.720 -07 000000455 INF: FPGA: Recv YRDPOS 132872
17-03-18 01:56:46.730 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:56:46.730 -07 000000444 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:46.750 -07 000000444 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:56:46.750 -07 000000444 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:56:46.750 -07 000000444 INF: Y Motor: Moved to 64.8789 after 1450 ms (table move)
17-03-18 01:56:46.760 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137981 mm (DAC = 30142)
17-03-18 01:56:46.760 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:46.760 -07 000000502 INF: FPGA: Recv ZSGSRD 30778
17-03-18 01:56:46.770 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:56:46.770 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:46.770 -07 000000502 INF: FPGA: Recv ZSGSRD 30765
17-03-18 01:56:46.780 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:46.780 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:46.780 -07 000000626 INF: FPGA: Recv ZSGSRD 30764
17-03-18 01:56:46.790 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:46.790 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:46.790 -07 000000626 INF: FPGA: Recv ZSGSRD 30772
17-03-18 01:56:46.800 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:46.800 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:46.800 -07 000000502 INF: FPGA: Recv ZSGSRD 30761
17-03-18 01:56:46.810 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:46.810 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:46.810 -07 000000502 INF: FPGA: Recv ZSGSRD 30768
17-03-18 01:56:46.820 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:46.820 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:46.820 -07 000000502 INF: FPGA: Recv ZSGSRD 30765
17-03-18 01:56:46.830 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:46.830 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:46.830 -07 000000585 INF: FPGA: Recv ZSGSRD 30765
17-03-18 01:56:46.840 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:46.840 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:46.840 -07 000000502 INF: FPGA: Recv ZSGSRD 30767
17-03-18 01:56:46.850 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:46.850 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:46.850 -07 000000585 INF: FPGA: Recv ZSGSRD 30772
17-03-18 01:56:46.860 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:46.860 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:56:46.860 -07 000000467 INF: FPGA: Recv ZPIEZORD 26674
17-03-18 01:56:46.870 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:46.870 -07 000000629 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.599 V. Piezo Error = -9.0 V.
17-03-18 01:56:46.870 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30768 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30766 (-137.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30761 (-137.1 uncal um), Max = 30778 (-137.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:56:46.870 -07 000000629 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30768, posNoise = 10, negNoise = 7
17-03-18 01:56:46.870 -07 000000629 INF: Z Motor: After move to -0.137981, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:56:46.870 -07 000000629 INF: Z Motor: Settle wait time = 1454 ms, measure time = 109 ms (allowed 150 ms), total time = 1563 ms
17-03-18 01:56:46.870 -07 000000629 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:56:46.919 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 01:56:46.919 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:56:46.919 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:56:46.919 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:56:46.919 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:56:46.929 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:56:46.929 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:56:46.929 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:56:46.929 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:56:46.929 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:56:46.929 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:56:46.929 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:56:46.939 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:56:46.939 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:56:46.969 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:56:47.009 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:56:47.309 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:56:47.309 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:56:47.309 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:56:47.309 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 01:56:47.349 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:56:47.349 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 01:56:47.349 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 405 ms overall
17-03-18 01:56:47.429 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:56:47.429 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:47.429 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:56:47.429 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 01:56:47.449 -07 000000502 INF: Autofocus start
17-03-18 01:56:47.449 -07 000000502 INF: MeasureProfile start
17-03-18 01:56:47.449 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:56:47.449 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:56:47.459 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:56:47.459 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:56:47.459 -07 000000502 INF: MeasureProfile done
17-03-18 01:56:47.459 -07 000000502 INF: X=-25  Z correction [um]=-0.1250985
17-03-18 01:56:47.459 -07 000000502 INF: Autofocus finished
17-03-18 01:56:47.659 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:56:47.659 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 01:56:47.669 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.137983511188836. ----------
17-03-18 01:56:47.669 -07 000000610 INF: Cycle	93	Tile	7	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:56:47.669 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28627, sync = True, waitForSettling = True)
17-03-18 01:56:47.669 -07 000000610 INF: Z Motor: Moving to -0.131046 mm, started at -0.137984 mm, distance = 6.94 um
17-03-18 01:56:47.669 -07 000000610 INF: FPGA: Xmit ZDACW 28627\n [Z Motor]
17-03-18 01:56:47.669 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 01:56:47.679 -07 000000610 INF: FPGA: 'ZDACW 28627' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:56:47.679 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:56:47.679 -07 000000629 INF: FPGA: Recv ZDACR 28627
17-03-18 01:56:47.689 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:47.689 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:56:47.839 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:47.839 -07 000000629 INF: FPGA: Recv ZSGSRD 29686
17-03-18 01:56:47.849 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:56:47.849 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:47.849 -07 000000629 INF: FPGA: Recv ZSGSRD 29694
17-03-18 01:56:47.859 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:47.859 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:47.859 -07 000000467 INF: FPGA: Recv ZSGSRD 29690
17-03-18 01:56:47.869 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:47.869 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:47.869 -07 000000502 INF: FPGA: Recv ZSGSRD 29685
17-03-18 01:56:47.879 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:47.879 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:47.879 -07 000000467 INF: FPGA: Recv ZSGSRD 29695
17-03-18 01:56:47.889 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:47.889 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:47.889 -07 000000629 INF: FPGA: Recv ZSGSRD 29691
17-03-18 01:56:47.899 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:47.899 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:47.899 -07 000000585 INF: FPGA: Recv ZSGSRD 29688
17-03-18 01:56:47.909 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:47.909 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:47.909 -07 000000629 INF: FPGA: Recv ZSGSRD 29694
17-03-18 01:56:47.919 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:47.919 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:47.919 -07 000000629 INF: FPGA: Recv ZSGSRD 29685
17-03-18 01:56:47.929 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:47.929 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:47.929 -07 000000611 INF: FPGA: Recv ZSGSRD 29690
17-03-18 01:56:47.939 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:47.939 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:56:47.939 -07 000000611 INF: FPGA: Recv ZPIEZORD 25272
17-03-18 01:56:47.949 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:47.949 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.368 V. Piezo Error = -9.7 V.
17-03-18 01:56:47.949 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29690 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29690 (-130.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29685 (-130.2 uncal um), Max = 29695 (-130.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:56:47.949 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29690, posNoise = 5, negNoise = 5
17-03-18 01:56:47.949 -07 000000610 INF: Z Motor: After move to -0.131046, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:56:47.949 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 01:56:47.949 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:56:47.949 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:56:47.949 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:56:47.949 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:56:47.949 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:56:47.949 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:56:47.949 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:56:47.949 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:56:47.949 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:56:47.949 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:56:47.949 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:56:47.949 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:56:47.959 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:56:47.959 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:56:47.959 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:56:47.959 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:56:47.969 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:56:47.969 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:56:47.969 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:56:47.969 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:56:47.969 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28804 150\n [Camera]
17-03-18 01:56:48.169 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:56:48.488 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 3.956714,
17-03-18 01:56:48.558 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:56:48.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:56:48.558 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:56:48.558 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:56:48.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:56:48.558 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:56:48.568 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:56:48.568 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 01:56:48.568 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:56:48.568 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 01:56:48.748 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28804 777
17-03-18 01:56:48.898 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:56:48.958 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 01:56:48.958 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 01:56:48.958 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:48.958 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:56:48.958 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:56:48.968 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 01:56:48.968 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:56:48.968 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:48.968 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:56:48.978 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:56:49.088 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:56:49.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:56:49.088 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:56:49.088 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:56:49.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:56:49.098 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:56:49.208 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:56:49.208 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 01:56:49.208 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:56:49.208 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 01:56:49.278 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 01:56:49.278 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:56:49.278 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28804 150' command took 2 ms to send, 1309 ms to get response, and 1316 ms overall
17-03-18 01:56:49.288 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:56:49.288 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.131058210500018. ------
17-03-18 01:56:49.288 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:56:49.288 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13765 mm
17-03-18 01:56:49.288 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:56:49.288 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:56:49.288 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 01:56:49.288 -07 000000569 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 01:56:49.288 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 30069, sync = True, waitForSettling = False)
17-03-18 01:56:49.288 -07 000000438 INF: Z Motor: Moving to -0.137647 mm, started at -0.131058 mm, distance = -6.59 um
17-03-18 01:56:49.298 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:56:49.298 -07 000000438 INF: FPGA: Xmit ZDACW 30069\n [Z Motor]
17-03-18 01:56:49.298 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 01:56:49.308 -07 000000438 INF: FPGA: 'ZDACW 30069' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:56:49.308 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:56:49.318 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:49.318 -07 000000502 INF: FPGA: Recv YRDPOS 132872
17-03-18 01:56:49.328 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 01:56:49.328 -07 000000569 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:49.328 -07 000000569 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:56:49.328 -07 000000569 INF: Y Motor: Moving 1350 steps-28
17-03-18 01:56:49.328 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:56:49.328 -07 000000611 INF: FPGA: Recv ZDACR 30069
17-03-18 01:56:49.338 -07 000000438 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:56:49.338 -07 000000438 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 01:56:49.338 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:56:49.508 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:56:49.508 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 01:56:49.608 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 01:56:49.608 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:56:49.608 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:49.608 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:56:49.608 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:56:49.608 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:49.618 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:56:49.618 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 526 ms.
17-03-18 01:56:49.618 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:56:49.628 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 530 ms.
17-03-18 01:56:49.718 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 01:56:49.718 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 370 ms to get response, and 389 ms overall
17-03-18 01:56:49.758 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:49.758 -07 000000585 INF: FPGA: Recv YRDPOS 134582
17-03-18 01:56:49.768 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:56:49.768 -07 000000569 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:49.768 -07 000000569 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 01:56:49.768 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.844 mm, average velocity = 2.169 mm/sec
17-03-18 01:56:50.717 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:50.717 -07 000000502 INF: FPGA: Recv YRDPOS 134583
17-03-18 01:56:50.727 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:56:50.727 -07 000000569 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:50.757 -07 000000569 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:56:50.757 -07 000000569 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 01:56:50.757 -07 000000569 INF: Y Motor: Moved to 65.7144 after 1462 ms (table move)
17-03-18 01:56:50.757 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137647 mm (DAC = 30069)
17-03-18 01:56:50.757 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:50.757 -07 000000569 INF: FPGA: Recv ZSGSRD 30718
17-03-18 01:56:50.767 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:56:50.767 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:50.767 -07 000000569 INF: FPGA: Recv ZSGSRD 30718
17-03-18 01:56:50.777 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:50.777 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:50.777 -07 000000467 INF: FPGA: Recv ZSGSRD 30709
17-03-18 01:56:50.787 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:50.787 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:50.787 -07 000000467 INF: FPGA: Recv ZSGSRD 30714
17-03-18 01:56:50.797 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:50.797 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:50.797 -07 000000455 INF: FPGA: Recv ZSGSRD 30716
17-03-18 01:56:50.807 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:50.807 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:50.807 -07 000000611 INF: FPGA: Recv ZSGSRD 30714
17-03-18 01:56:50.817 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:50.817 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:50.817 -07 000000611 INF: FPGA: Recv ZSGSRD 30719
17-03-18 01:56:50.827 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:50.827 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:50.827 -07 000000611 INF: FPGA: Recv ZSGSRD 30721
17-03-18 01:56:50.837 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:50.837 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:50.837 -07 000000462 INF: FPGA: Recv ZSGSRD 30723
17-03-18 01:56:50.847 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:50.847 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:50.847 -07 000000462 INF: FPGA: Recv ZSGSRD 30713
17-03-18 01:56:50.857 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:50.857 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:56:50.857 -07 000000462 INF: FPGA: Recv ZPIEZORD 26624
17-03-18 01:56:50.867 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:50.867 -07 000000629 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.588 V. Piezo Error = -9.0 V.
17-03-18 01:56:50.867 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30716 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30717 (-136.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30709 (-136.8 uncal um), Max = 30723 (-136.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:56:50.867 -07 000000629 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30716, posNoise = 7, negNoise = 7
17-03-18 01:56:50.867 -07 000000629 INF: Z Motor: After move to -0.137647, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:56:50.867 -07 000000629 INF: Z Motor: Settle wait time = 1465 ms, measure time = 106 ms (allowed 150 ms), total time = 1571 ms
17-03-18 01:56:50.867 -07 000000629 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 01:56:50.917 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 01:56:50.917 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:56:50.917 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:56:50.917 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:56:50.917 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:56:50.917 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:56:50.917 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:56:50.917 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:56:50.917 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:56:50.917 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:56:50.927 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:56:50.927 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:56:50.937 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:56:50.937 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:56:50.937 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:56:50.987 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:56:51.287 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:56:51.287 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:56:51.287 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:56:51.287 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1109425880, 0x0, 559484976) start.
17-03-18 01:56:51.327 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:56:51.327 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 01:56:51.327 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 01:56:51.406 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1109425880, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 01:56:51.406 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:51.406 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:56:51.406 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 01:56:51.426 -07 000000585 INF: Autofocus start
17-03-18 01:56:51.426 -07 000000585 INF: MeasureProfile start
17-03-18 01:56:51.426 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:56:51.426 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:56:51.436 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:56:51.436 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:56:51.436 -07 000000585 INF: MeasureProfile done
17-03-18 01:56:51.436 -07 000000585 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:56:51.436 -07 000000585 INF: Autofocus finished
17-03-18 01:56:51.626 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:56:51.626 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:56:51.636 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:56:51.636 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:56:51.636 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.137649452157465. ----------
17-03-18 01:56:51.636 -07 000000610 INF: Cycle	93	Tile	8	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:56:51.646 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28593, sync = True, waitForSettling = True)
17-03-18 01:56:51.646 -07 000000610 INF: Z Motor: Moving to -0.130890 mm, started at -0.137649 mm, distance = 6.76 um
17-03-18 01:56:51.646 -07 000000610 INF: FPGA: Xmit ZDACW 28593\n [Z Motor]
17-03-18 01:56:51.646 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 01:56:51.656 -07 000000610 INF: FPGA: 'ZDACW 28593' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:56:51.656 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:56:51.656 -07 000000629 INF: FPGA: Recv ZDACR 28593
17-03-18 01:56:51.666 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:51.666 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:56:51.816 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:51.816 -07 000000585 INF: FPGA: Recv ZSGSRD 29670
17-03-18 01:56:51.826 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:56:51.826 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:51.826 -07 000000585 INF: FPGA: Recv ZSGSRD 29664
17-03-18 01:56:51.836 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:51.836 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:51.836 -07 000000629 INF: FPGA: Recv ZSGSRD 29664
17-03-18 01:56:51.846 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:51.846 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:51.846 -07 000000585 INF: FPGA: Recv ZSGSRD 29668
17-03-18 01:56:51.856 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:51.856 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:51.856 -07 000000629 INF: FPGA: Recv ZSGSRD 29659
17-03-18 01:56:51.866 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:51.866 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:51.866 -07 000000629 INF: FPGA: Recv ZSGSRD 29665
17-03-18 01:56:51.876 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:51.876 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:51.876 -07 000000629 INF: FPGA: Recv ZSGSRD 29663
17-03-18 01:56:51.886 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:51.886 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:51.886 -07 000000585 INF: FPGA: Recv ZSGSRD 29666
17-03-18 01:56:51.896 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:51.896 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:51.896 -07 000000585 INF: FPGA: Recv ZSGSRD 29668
17-03-18 01:56:51.906 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:51.906 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:51.906 -07 000000462 INF: FPGA: Recv ZSGSRD 29662
17-03-18 01:56:51.916 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:51.916 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:56:51.916 -07 000000444 INF: FPGA: Recv ZPIEZORD 25259
17-03-18 01:56:51.926 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:51.926 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.363 V. Piezo Error = -9.7 V.
17-03-18 01:56:51.926 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29665 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29664 (-130.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29659 (-130.1 uncal um), Max = 29670 (-130.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:56:51.926 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29665, posNoise = 5, negNoise = 6
17-03-18 01:56:51.926 -07 000000610 INF: Z Motor: After move to -0.130890, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:56:51.926 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:56:51.926 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:56:51.926 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:56:51.926 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:56:51.926 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:56:51.926 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:56:51.926 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:56:51.936 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:56:51.936 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:56:51.936 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:56:51.936 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:56:51.936 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:56:51.936 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:56:51.936 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:56:51.936 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:56:51.936 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:56:51.936 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:56:51.946 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:56:51.946 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:56:51.946 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 01:56:51.946 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:56:51.946 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28770 150\n [Camera]
17-03-18 01:56:52.146 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:56:52.536 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:56:52.536 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:56:52.546 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:56:52.546 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:56:52.546 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:56:52.546 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:56:52.546 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:56:52.546 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 01:56:52.546 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:56:52.546 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 01:56:52.736 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28770 777
17-03-18 01:56:52.885 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:56:52.945 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:56:52.945 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:56:52.945 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:52.945 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:56:52.945 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:56:52.945 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:52.945 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:56:52.945 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:56:52.945 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:56:52.955 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:56:53.075 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:56:53.075 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:56:53.075 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:56:53.075 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:56:53.075 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:56:53.075 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:56:53.075 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:56:53.075 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:56:53.075 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:56:53.075 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 01:56:53.265 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 01:56:53.265 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:56:53.265 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28770 150' command took 2 ms to send, 1312 ms to get response, and 1315 ms overall
17-03-18 01:56:53.265 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:56:53.265 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.130897605196474. ------
17-03-18 01:56:53.265 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:56:53.265 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13727 mm
17-03-18 01:56:53.265 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:56:53.275 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:56:53.275 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 01:56:53.275 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29987, sync = True, waitForSettling = False)
17-03-18 01:56:53.275 -07 000000626 INF: Z Motor: Moving to -0.137272 mm, started at -0.130898 mm, distance = -6.37 um
17-03-18 01:56:53.275 -07 000000592 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:56:53.275 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 01:56:53.275 -07 000000585 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-18 01:56:53.285 -07 000000626 INF: FPGA: Xmit ZDACW 29987\n [Z Motor]
17-03-18 01:56:53.285 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 01:56:53.295 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:53.295 -07 000000626 INF: FPGA: 'ZDACW 29987' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 01:56:53.295 -07 000000629 INF: FPGA: Recv YRDPOS 134583
17-03-18 01:56:53.305 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 01:56:53.305 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:56:53.305 -07 000000585 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:53.305 -07 000000585 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:56:53.305 -07 000000585 INF: Y Motor: Moving 1341 steps-18
17-03-18 01:56:53.305 -07 000000629 INF: FPGA: Recv ZDACR 29987
17-03-18 01:56:53.315 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:56:53.315 -07 000000626 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 01:56:53.315 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:56:53.465 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 01:56:53.465 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 01:56:53.465 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:53.465 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:56:53.465 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:56:53.475 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:53.475 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:56:53.475 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:56:53.475 -07 000000592 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 01:56:53.475 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:56:53.475 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:56:53.475 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 01:56:53.685 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 01:56:53.685 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 01:56:53.735 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:53.735 -07 000000626 INF: FPGA: Recv YRDPOS 136272
17-03-18 01:56:53.745 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:56:53.745 -07 000000585 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:53.745 -07 000000585 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:56:53.745 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.166 mm/sec
17-03-18 01:56:53.845 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 3.978563,
17-03-18 01:56:54.694 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:54.694 -07 000000569 INF: FPGA: Recv YRDPOS 136272
17-03-18 01:56:54.704 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:56:54.704 -07 000000585 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:54.724 -07 000000585 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:56:54.724 -07 000000585 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:56:54.724 -07 000000585 INF: Y Motor: Moved to 66.5391 after 1455 ms (table move)
17-03-18 01:56:54.734 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137272 mm (DAC = 29987)
17-03-18 01:56:54.734 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:54.734 -07 000000592 INF: FPGA: Recv ZSGSRD 30653
17-03-18 01:56:54.744 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:56:54.744 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:54.744 -07 000000569 INF: FPGA: Recv ZSGSRD 30660
17-03-18 01:56:54.754 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:54.754 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:54.754 -07 000000585 INF: FPGA: Recv ZSGSRD 30660
17-03-18 01:56:54.764 -07 000000444 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:54.764 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:54.764 -07 000000592 INF: FPGA: Recv ZSGSRD 30652
17-03-18 01:56:54.774 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:54.774 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:54.774 -07 000000585 INF: FPGA: Recv ZSGSRD 30664
17-03-18 01:56:54.784 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:54.784 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:54.784 -07 000000592 INF: FPGA: Recv ZSGSRD 30653
17-03-18 01:56:54.794 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:54.794 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:54.794 -07 000000438 INF: FPGA: Recv ZSGSRD 30654
17-03-18 01:56:54.804 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:54.804 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:54.804 -07 000000462 INF: FPGA: Recv ZSGSRD 30662
17-03-18 01:56:54.814 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:54.814 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:54.814 -07 000000629 INF: FPGA: Recv ZSGSRD 30653
17-03-18 01:56:54.824 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:54.824 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:54.824 -07 000000592 INF: FPGA: Recv ZSGSRD 30665
17-03-18 01:56:54.834 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:54.834 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:56:54.834 -07 000000462 INF: FPGA: Recv ZPIEZORD 26553
17-03-18 01:56:54.844 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:54.844 -07 000000444 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.576 V. Piezo Error = -9.0 V.
17-03-18 01:56:54.844 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30658 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30657 (-136.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30652 (-136.4 uncal um), Max = 30665 (-136.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:56:54.844 -07 000000444 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30658, posNoise = 7, negNoise = 6
17-03-18 01:56:54.844 -07 000000444 INF: Z Motor: After move to -0.137272, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:56:54.844 -07 000000444 INF: Z Motor: Settle wait time = 1459 ms, measure time = 109 ms (allowed 150 ms), total time = 1568 ms
17-03-18 01:56:54.844 -07 000000444 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:56:54.894 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 01:56:54.894 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:56:54.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:56:54.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:56:54.894 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:56:54.894 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:56:54.894 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:56:54.894 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:56:54.894 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:56:54.894 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:56:54.904 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:56:54.904 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:56:54.904 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 01:56:54.904 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 01:56:54.914 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:56:54.954 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:56:55.254 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:56:55.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:56:55.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:56:55.374 -07 000000569 INF: FPGA: Recv @CAMSNAP 383
17-03-18 01:56:55.374 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 01:56:55.374 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 01:56:55.374 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 453 ms to get response, and 462 ms overall
17-03-18 01:56:55.494 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 01:56:55.494 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:55.494 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:56:55.494 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 234 ms.
17-03-18 01:56:55.574 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:56:55.574 -07 000000438 INF: Autofocus start
17-03-18 01:56:55.574 -07 000000438 INF: MeasureProfile start
17-03-18 01:56:55.574 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:56:55.584 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:56:55.584 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:56:55.584 -07 000000438 INF: MeasureProfile done
17-03-18 01:56:55.584 -07 000000438 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 01:56:55.584 -07 000000438 INF: Autofocus finished
17-03-18 01:56:55.784 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:56:55.784 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 01:56:55.784 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.137276847853242. ----------
17-03-18 01:56:55.794 -07 000000610 INF: Cycle	93	Tile	9	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:56:55.794 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28482, sync = True, waitForSettling = True)
17-03-18 01:56:55.794 -07 000000610 INF: Z Motor: Moving to -0.130382 mm, started at -0.137277 mm, distance = 6.89 um
17-03-18 01:56:55.794 -07 000000610 INF: FPGA: Xmit ZDACW 28482\n [Z Motor]
17-03-18 01:56:55.794 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 01:56:55.804 -07 000000610 INF: FPGA: 'ZDACW 28482' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:56:55.804 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:56:55.804 -07 000000438 INF: FPGA: Recv ZDACR 28482
17-03-18 01:56:55.814 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:55.814 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:56:55.963 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:55.963 -07 000000608 INF: FPGA: Recv ZSGSRD 29583
17-03-18 01:56:55.973 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:56:55.973 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:55.973 -07 000000438 INF: FPGA: Recv ZSGSRD 29588
17-03-18 01:56:55.983 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:55.983 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:55.983 -07 000000569 INF: FPGA: Recv ZSGSRD 29581
17-03-18 01:56:55.993 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:55.993 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:55.993 -07 000000592 INF: FPGA: Recv ZSGSRD 29591
17-03-18 01:56:56.003 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:56.003 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:56.003 -07 000000561 INF: FPGA: Recv ZSGSRD 29590
17-03-18 01:56:56.013 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:56.013 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:56.013 -07 000000561 INF: FPGA: Recv ZSGSRD 29588
17-03-18 01:56:56.023 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:56.023 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:56.023 -07 000000585 INF: FPGA: Recv ZSGSRD 29584
17-03-18 01:56:56.033 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:56.033 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:56.033 -07 000000561 INF: FPGA: Recv ZSGSRD 29583
17-03-18 01:56:56.043 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:56.043 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:56.043 -07 000000585 INF: FPGA: Recv ZSGSRD 29588
17-03-18 01:56:56.053 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:56.053 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:56.053 -07 000000438 INF: FPGA: Recv ZSGSRD 29584
17-03-18 01:56:56.063 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:56.063 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:56:56.063 -07 000000462 INF: FPGA: Recv ZPIEZORD 25127
17-03-18 01:56:56.073 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:56.073 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.346 V. Piezo Error = -9.8 V.
17-03-18 01:56:56.073 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29586 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29586 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29581 (-129.6 uncal um), Max = 29591 (-129.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:56:56.073 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29586, posNoise = 5, negNoise = 5
17-03-18 01:56:56.073 -07 000000610 INF: Z Motor: After move to -0.130382, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:56:56.073 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:56:56.073 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:56:56.073 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:56:56.073 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:56:56.073 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:56:56.073 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:56:56.073 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:56:56.073 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:56:56.073 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:56:56.073 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:56:56.073 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:56:56.073 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:56:56.073 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:56:56.083 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:56:56.083 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:56:56.083 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:56:56.083 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:56:56.093 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:56:56.093 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:56:56.093 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 01:56:56.093 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:56:56.093 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28659 150\n [Camera]
17-03-18 01:56:56.293 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:56:56.623 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:56:56.623 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:56:56.683 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:56:56.683 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:56:56.683 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:56:56.683 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:56:56.683 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:56:56.683 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:56:56.693 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:56:56.693 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1088145512, 0x0, 418435064) start.
17-03-18 01:56:56.693 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:56:56.693 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:56:56.883 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28659 780
17-03-18 01:56:57.023 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:56:57.083 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1088145512, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 01:56:57.083 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:56:57.083 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:57.093 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:56:57.093 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:56:57.093 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:57.093 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:56:57.093 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:56:57.093 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 01:56:57.093 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 01:56:57.213 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:56:57.213 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:56:57.213 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:56:57.213 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:56:57.223 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:56:57.223 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:56:57.223 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:56:57.223 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:56:57.332 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:56:57.332 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 01:56:57.402 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:56:57.402 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:56:57.402 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28659 150' command took 2 ms to send, 1308 ms to get response, and 1314 ms overall
17-03-18 01:56:57.412 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:56:57.412 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.130390092437275. ------
17-03-18 01:56:57.412 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:56:57.412 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13725 mm
17-03-18 01:56:57.412 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:56:57.412 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 01:56:57.412 -07 000000438 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 01:56:57.412 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29981, sync = True, waitForSettling = False)
17-03-18 01:56:57.412 -07 000000462 INF: Z Motor: Moving to -0.137244 mm, started at -0.130390 mm, distance = -6.85 um
17-03-18 01:56:57.412 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:56:57.422 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:56:57.422 -07 000000462 INF: FPGA: Xmit ZDACW 29981\n [Z Motor]
17-03-18 01:56:57.422 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:56:57.432 -07 000000462 INF: FPGA: 'ZDACW 29981' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:56:57.432 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:56:57.442 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:57.442 -07 000000444 INF: FPGA: Recv YRDPOS 136273
17-03-18 01:56:57.452 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:56:57.452 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 01:56:57.452 -07 000000438 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:57.452 -07 000000569 INF: FPGA: Recv ZDACR 29981
17-03-18 01:56:57.452 -07 000000438 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:56:57.452 -07 000000438 INF: Y Motor: Moving 1349 steps-28
17-03-18 01:56:57.462 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:56:57.462 -07 000000462 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 01:56:57.462 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:56:57.612 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 01:56:57.612 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 01:56:57.612 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:57.612 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:56:57.622 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:56:57.632 -07 000000592 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:56:57.632 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 01:56:57.722 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 01:56:57.722 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:56:57.722 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:57.732 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:56:57.732 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms.
17-03-18 01:56:57.832 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 01:56:57.832 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-18 01:56:57.882 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:57.882 -07 000000569 INF: FPGA: Recv YRDPOS 137978
17-03-18 01:56:57.892 -07 000000438 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:56:57.892 -07 000000438 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:57.892 -07 000000438 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 01:56:57.892 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.844 mm, average velocity = 2.214 mm/sec
17-03-18 01:56:58.841 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:56:58.841 -07 000000569 INF: FPGA: Recv YRDPOS 137978
17-03-18 01:56:58.851 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:58.851 -07 000000438 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:56:58.871 -07 000000438 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:56:58.871 -07 000000438 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:56:58.871 -07 000000438 INF: Y Motor: Moved to 67.3721 after 1460 ms (table move)
17-03-18 01:56:58.881 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137244 mm (DAC = 29981)
17-03-18 01:56:58.881 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:58.881 -07 000000461 INF: FPGA: Recv ZSGSRD 30650
17-03-18 01:56:58.891 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:58.891 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:58.891 -07 000000438 INF: FPGA: Recv ZSGSRD 30660
17-03-18 01:56:58.901 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:58.901 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:58.901 -07 000000502 INF: FPGA: Recv ZSGSRD 30658
17-03-18 01:56:58.911 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:58.911 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:58.911 -07 000000569 INF: FPGA: Recv ZSGSRD 30655
17-03-18 01:56:58.921 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:58.921 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:58.921 -07 000000629 INF: FPGA: Recv ZSGSRD 30653
17-03-18 01:56:58.931 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:58.931 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:58.931 -07 000000569 INF: FPGA: Recv ZSGSRD 30647
17-03-18 01:56:58.941 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:58.941 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:58.941 -07 000000629 INF: FPGA: Recv ZSGSRD 30655
17-03-18 01:56:58.951 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:58.951 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:58.951 -07 000000438 INF: FPGA: Recv ZSGSRD 30651
17-03-18 01:56:58.961 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:58.961 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:58.961 -07 000000629 INF: FPGA: Recv ZSGSRD 30656
17-03-18 01:56:58.971 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:58.971 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:58.971 -07 000000569 INF: FPGA: Recv ZSGSRD 30657
17-03-18 01:56:58.981 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:58.981 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:56:58.981 -07 000000502 INF: FPGA: Recv ZPIEZORD 26559
17-03-18 01:56:58.991 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:58.991 -07 000000561 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.575 V. Piezo Error = -9.0 V.
17-03-18 01:56:58.991 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30654 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30655 (-136.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30647 (-136.4 uncal um), Max = 30660 (-136.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:56:58.991 -07 000000561 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30654, posNoise = 6, negNoise = 7
17-03-18 01:56:58.991 -07 000000561 INF: Z Motor: After move to -0.137244, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:56:58.991 -07 000000561 INF: Z Motor: Settle wait time = 1463 ms, measure time = 109 ms (allowed 150 ms), total time = 1572 ms
17-03-18 01:56:58.991 -07 000000561 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:56:59.041 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 01:56:59.041 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:56:59.041 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:56:59.041 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:56:59.041 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:56:59.041 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:56:59.041 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:56:59.041 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:56:59.041 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:56:59.051 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:56:59.051 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:56:59.051 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:56:59.061 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:56:59.061 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:56:59.061 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:56:59.111 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:56:59.411 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:56:59.411 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:56:59.411 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:56:59.411 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 613074248, 0x0, 559484976) start.
17-03-18 01:56:59.451 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:56:59.451 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 01:56:59.451 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 01:56:59.521 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 613074248, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:56:59.521 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:56:59.531 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:56:59.531 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:56:59.551 -07 000000467 INF: Autofocus start
17-03-18 01:56:59.551 -07 000000467 INF: MeasureProfile start
17-03-18 01:56:59.551 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:56:59.551 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:56:59.561 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:56:59.561 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:56:59.561 -07 000000467 INF: MeasureProfile done
17-03-18 01:56:59.561 -07 000000467 INF: X=-10  Z correction [um]=-0.05208117
17-03-18 01:56:59.561 -07 000000467 INF: Autofocus finished
17-03-18 01:56:59.761 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:56:59.761 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:56:59.761 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137251151004675. ----------
17-03-18 01:56:59.761 -07 000000610 INF: Cycle	93	Tile	10	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:56:59.771 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28483, sync = True, waitForSettling = True)
17-03-18 01:56:59.771 -07 000000610 INF: Z Motor: Moving to -0.130387 mm, started at -0.137251 mm, distance = 6.86 um
17-03-18 01:56:59.771 -07 000000610 INF: FPGA: Xmit ZDACW 28483\n [Z Motor]
17-03-18 01:56:59.771 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 01:56:59.781 -07 000000610 INF: FPGA: 'ZDACW 28483' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:59.781 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:56:59.781 -07 000000438 INF: FPGA: Recv ZDACR 28483
17-03-18 01:56:59.791 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:59.791 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:56:59.841 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 3.981281,
17-03-18 01:56:59.941 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:59.941 -07 000000592 INF: FPGA: Recv ZSGSRD 29589
17-03-18 01:56:59.951 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:56:59.951 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:59.951 -07 000000444 INF: FPGA: Recv ZSGSRD 29586
17-03-18 01:56:59.961 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:59.961 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:59.961 -07 000000455 INF: FPGA: Recv ZSGSRD 29582
17-03-18 01:56:59.971 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:59.971 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:59.971 -07 000000585 INF: FPGA: Recv ZSGSRD 29582
17-03-18 01:56:59.981 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:59.981 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:59.981 -07 000000462 INF: FPGA: Recv ZSGSRD 29581
17-03-18 01:56:59.991 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:56:59.991 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:56:59.991 -07 000000592 INF: FPGA: Recv ZSGSRD 29589
17-03-18 01:57:00.001 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:00.001 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:00.001 -07 000000592 INF: FPGA: Recv ZSGSRD 29593
17-03-18 01:57:00.011 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:00.011 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:00.011 -07 000000462 INF: FPGA: Recv ZSGSRD 29590
17-03-18 01:57:00.021 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:00.021 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:00.021 -07 000000444 INF: FPGA: Recv ZSGSRD 29589
17-03-18 01:57:00.031 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:00.031 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:00.031 -07 000000461 INF: FPGA: Recv ZSGSRD 29583
17-03-18 01:57:00.041 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:00.041 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:57:00.041 -07 000000608 INF: FPGA: Recv ZPIEZORD 25166
17-03-18 01:57:00.051 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:00.051 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.346 V. Piezo Error = -9.7 V.
17-03-18 01:57:00.051 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29586 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29588 (-129.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29581 (-129.6 uncal um), Max = 29593 (-129.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:57:00.051 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29586, posNoise = 7, negNoise = 5
17-03-18 01:57:00.051 -07 000000610 INF: Z Motor: After move to -0.130387, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:57:00.051 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 01:57:00.051 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:57:00.051 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:57:00.051 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:57:00.051 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:57:00.051 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:57:00.051 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:57:00.051 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:57:00.051 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:57:00.051 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:57:00.051 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:57:00.051 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:57:00.051 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:57:00.061 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:57:00.061 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 01:57:00.061 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:57:00.061 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:57:00.071 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:57:00.071 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:57:00.071 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:57:00.071 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:57:00.071 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28659 150\n [Camera]
17-03-18 01:57:00.271 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:57:00.660 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:57:00.660 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:57:00.660 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:57:00.670 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:57:00.670 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:57:00.670 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:57:00.670 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:57:00.670 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 01:57:00.670 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:57:00.670 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1082280040, 0x0, 391868352) start.
17-03-18 01:57:00.860 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28659 777
17-03-18 01:57:01.000 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:57:01.060 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 01:57:01.060 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 01:57:01.060 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:01.060 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1082280040, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 01:57:01.060 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:57:01.060 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:57:01.060 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:01.070 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:57:01.070 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:57:01.070 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:57:01.200 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 01:57:01.200 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 01:57:01.200 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:57:01.200 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:57:01.200 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 01:57:01.200 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 01:57:01.200 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 01:57:01.200 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:57:01.200 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:57:01.200 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 01:57:01.380 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:57:01.390 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:57:01.390 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28659 150' command took 2 ms to send, 1310 ms to get response, and 1315 ms overall
17-03-18 01:57:01.390 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:57:01.390 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.130390092437275. ------
17-03-18 01:57:01.390 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:57:01.390 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13675 mm
17-03-18 01:57:01.390 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:57:01.400 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:57:01.400 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 01:57:01.400 -07 000000455 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 01:57:01.400 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:57:01.400 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:57:01.400 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 29872, sync = True, waitForSettling = False)
17-03-18 01:57:01.400 -07 000000444 INF: Z Motor: Moving to -0.136745 mm, started at -0.130390 mm, distance = -6.36 um
17-03-18 01:57:01.400 -07 000000608 INF: FPGA: Recv YRDPOS 137979
17-03-18 01:57:01.410 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:01.410 -07 000000444 INF: FPGA: Xmit ZDACW 29872\n [Z Motor]
17-03-18 01:57:01.410 -07 000000455 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:57:01.410 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 01:57:01.410 -07 000000455 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:57:01.410 -07 000000455 INF: Y Motor: Moving 1344 steps-22
17-03-18 01:57:01.420 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:57:01.420 -07 000000444 INF: FPGA: 'ZDACW 29872' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:57:01.430 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:57:01.440 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:57:01.440 -07 000000502 INF: FPGA: Recv ZDACR 29872
17-03-18 01:57:01.450 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:57:01.450 -07 000000444 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 01:57:01.600 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 01:57:01.600 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:57:01.600 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:01.600 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:57:01.600 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:57:01.600 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:01.610 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:57:01.610 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:57:01.610 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 01:57:01.610 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 01:57:01.620 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:57:01.620 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:57:01.620 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 01:57:01.620 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:57:01.800 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 01:57:01.800 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 01:57:01.849 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:57:01.849 -07 000000592 INF: FPGA: Recv YRDPOS 139685
17-03-18 01:57:01.859 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:57:01.859 -07 000000455 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:57:01.859 -07 000000455 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 01:57:01.859 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.841 mm, average velocity = 2.133 mm/sec
17-03-18 01:57:02.809 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:57:02.809 -07 000000462 INF: FPGA: Recv YRDPOS 139685
17-03-18 01:57:02.819 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:57:02.819 -07 000000455 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:57:02.839 -07 000000455 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:57:02.839 -07 000000455 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:57:02.839 -07 000000455 INF: Y Motor: Moved to 68.2056 after 1445 ms (table move)
17-03-18 01:57:02.839 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136745 mm (DAC = 29872)
17-03-18 01:57:02.839 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:02.849 -07 000000585 INF: FPGA: Recv ZSGSRD 30582
17-03-18 01:57:02.849 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 01:57:02.849 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:02.849 -07 000000455 INF: FPGA: Recv ZSGSRD 30572
17-03-18 01:57:02.859 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:57:02.859 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:02.859 -07 000000502 INF: FPGA: Recv ZSGSRD 30581
17-03-18 01:57:02.869 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:02.869 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:02.869 -07 000000502 INF: FPGA: Recv ZSGSRD 30573
17-03-18 01:57:02.879 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:57:02.879 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:02.879 -07 000000608 INF: FPGA: Recv ZSGSRD 30578
17-03-18 01:57:02.889 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:02.889 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:02.889 -07 000000502 INF: FPGA: Recv ZSGSRD 30580
17-03-18 01:57:02.899 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:02.899 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:02.899 -07 000000592 INF: FPGA: Recv ZSGSRD 30572
17-03-18 01:57:02.909 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:02.909 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:02.909 -07 000000608 INF: FPGA: Recv ZSGSRD 30572
17-03-18 01:57:02.919 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:02.919 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:02.919 -07 000000444 INF: FPGA: Recv ZSGSRD 30577
17-03-18 01:57:02.929 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:02.929 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:02.929 -07 000000502 INF: FPGA: Recv ZSGSRD 30578
17-03-18 01:57:02.939 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:02.939 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:57:02.939 -07 000000444 INF: FPGA: Recv ZPIEZORD 26420
17-03-18 01:57:02.949 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:02.949 -07 000000461 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.558 V. Piezo Error = -9.1 V.
17-03-18 01:57:02.949 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.7 um, Read 10 ADC samples: Avg = 30576 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30578 (-136.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30572 (-135.9 uncal um), Max = 30582 (-136.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:57:02.949 -07 000000461 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30576, posNoise = 6, negNoise = 4
17-03-18 01:57:02.949 -07 000000461 INF: Z Motor: After move to -0.136745, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:57:02.949 -07 000000461 INF: Z Motor: Settle wait time = 1447 ms, measure time = 102 ms (allowed 150 ms), total time = 1549 ms
17-03-18 01:57:02.949 -07 000000461 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 01:57:02.999 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-18 01:57:02.999 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:57:02.999 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:57:02.999 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:57:02.999 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:57:02.999 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:57:02.999 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:57:02.999 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:57:03.009 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 01:57:03.009 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:57:03.009 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:57:03.009 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:57:03.019 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 01:57:03.019 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:57:03.039 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:57:03.079 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:57:03.378 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:57:03.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:57:03.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:57:03.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1117702304, 0x0, 559484976) start.
17-03-18 01:57:03.418 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:57:03.418 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 01:57:03.418 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 398 ms overall
17-03-18 01:57:03.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1117702304, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:57:03.498 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:03.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:57:03.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:57:03.518 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:57:03.518 -07 000000502 INF: Autofocus start
17-03-18 01:57:03.518 -07 000000502 INF: MeasureProfile start
17-03-18 01:57:03.518 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:57:03.528 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:57:03.528 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:57:03.538 -07 000000502 INF: MeasureProfile done
17-03-18 01:57:03.538 -07 000000502 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:57:03.538 -07 000000502 INF: Autofocus finished
17-03-18 01:57:03.728 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:57:03.728 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:57:03.728 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.136750062457618. ----------
17-03-18 01:57:03.728 -07 000000610 INF: Cycle	93	Tile	11	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:57:03.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28396, sync = True, waitForSettling = True)
17-03-18 01:57:03.738 -07 000000610 INF: Z Motor: Moving to -0.129989 mm, started at -0.136750 mm, distance = 6.76 um
17-03-18 01:57:03.738 -07 000000610 INF: FPGA: Xmit ZDACW 28396\n [Z Motor]
17-03-18 01:57:03.738 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 01:57:03.748 -07 000000610 INF: FPGA: 'ZDACW 28396' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:57:03.748 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:57:03.748 -07 000000611 INF: FPGA: Recv ZDACR 28396
17-03-18 01:57:03.758 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:03.758 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:57:03.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:03.908 -07 000000585 INF: FPGA: Recv ZSGSRD 29519
17-03-18 01:57:03.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:57:03.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:03.918 -07 000000462 INF: FPGA: Recv ZSGSRD 29524
17-03-18 01:57:03.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:03.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:03.928 -07 000000585 INF: FPGA: Recv ZSGSRD 29524
17-03-18 01:57:03.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:03.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:03.938 -07 000000608 INF: FPGA: Recv ZSGSRD 29528
17-03-18 01:57:03.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:03.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:03.948 -07 000000585 INF: FPGA: Recv ZSGSRD 29522
17-03-18 01:57:03.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:03.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:03.958 -07 000000438 INF: FPGA: Recv ZSGSRD 29526
17-03-18 01:57:03.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:03.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:03.968 -07 000000608 INF: FPGA: Recv ZSGSRD 29527
17-03-18 01:57:03.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:03.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:03.978 -07 000000462 INF: FPGA: Recv ZSGSRD 29526
17-03-18 01:57:03.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:03.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:03.988 -07 000000608 INF: FPGA: Recv ZSGSRD 29519
17-03-18 01:57:03.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:03.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:03.998 -07 000000438 INF: FPGA: Recv ZSGSRD 29519
17-03-18 01:57:04.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:04.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:57:04.008 -07 000000608 INF: FPGA: Recv ZPIEZORD 25079
17-03-18 01:57:04.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:04.018 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.333 V. Piezo Error = -9.8 V.
17-03-18 01:57:04.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29523 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29524 (-129.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29519 (-129.2 uncal um), Max = 29528 (-129.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:57:04.018 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29523, posNoise = 5, negNoise = 4
17-03-18 01:57:04.018 -07 000000610 INF: Z Motor: After move to -0.129989, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:57:04.018 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:57:04.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:57:04.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:57:04.018 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:57:04.018 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:57:04.018 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:57:04.018 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:57:04.018 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:57:04.018 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:57:04.018 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:57:04.018 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:57:04.018 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:57:04.018 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:57:04.028 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:57:04.028 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:57:04.028 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:57:04.028 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:57:04.028 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:57:04.028 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:57:04.038 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:57:04.038 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:57:04.038 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28573 150\n [Camera]
17-03-18 01:57:04.238 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:57:04.628 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:57:04.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:57:04.628 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:57:04.628 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:57:04.628 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 01:57:04.638 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:57:04.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:57:04.638 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:57:04.638 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:57:04.638 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 01:57:04.827 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28573 777
17-03-18 01:57:04.977 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:57:05.027 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:57:05.027 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:57:05.027 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:05.037 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:57:05.037 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:57:05.037 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:05.037 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:57:05.037 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 01:57:05.037 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:57:05.047 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:57:05.157 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:57:05.157 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:57:05.157 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:57:05.157 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:57:05.157 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 01:57:05.167 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:57:05.167 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:57:05.167 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:57:05.167 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:57:05.167 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 01:57:05.197 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.009895,
17-03-18 01:57:05.347 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:57:05.357 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:57:05.357 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28573 150' command took 2 ms to send, 1310 ms to get response, and 1315 ms overall
17-03-18 01:57:05.357 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:57:05.357 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.129985367072344. ------
17-03-18 01:57:05.357 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:57:05.357 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13661 mm
17-03-18 01:57:05.357 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:57:05.357 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 01:57:05.357 -07 000000608 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-18 01:57:05.357 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29843, sync = True, waitForSettling = False)
17-03-18 01:57:05.357 -07 000000626 INF: Z Motor: Moving to -0.136612 mm, started at -0.129985 mm, distance = -6.63 um
17-03-18 01:57:05.367 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:57:05.367 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:57:05.367 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:57:05.367 -07 000000606 INF: FPGA: Recv YRDPOS 139685
17-03-18 01:57:05.377 -07 000000608 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:57:05.377 -07 000000608 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:57:05.377 -07 000000608 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:57:05.377 -07 000000608 INF: Y Motor: Moving 1339 steps-14
17-03-18 01:57:05.377 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:57:05.387 -07 000000626 INF: FPGA: Xmit ZDACW 29843\n [Z Motor]
17-03-18 01:57:05.387 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 01:57:05.397 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:57:05.397 -07 000000626 INF: FPGA: 'ZDACW 29843' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:57:05.407 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:57:05.407 -07 000000606 INF: FPGA: Recv ZDACR 29843
17-03-18 01:57:05.417 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:57:05.417 -07 000000626 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 01:57:05.557 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 01:57:05.557 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 01:57:05.557 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:05.557 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:57:05.557 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:57:05.557 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:05.557 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:57:05.567 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:57:05.567 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:57:05.567 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 01:57:05.577 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:57:05.577 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 01:57:05.777 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 01:57:05.777 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 401 ms overall
17-03-18 01:57:05.817 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:57:05.827 -07 000000462 INF: FPGA: Recv YRDPOS 141368
17-03-18 01:57:05.827 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:57:05.827 -07 000000608 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:57:05.827 -07 000000608 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 01:57:05.827 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 403 ms, distance = 0.837 mm, average velocity = 2.077 mm/sec
17-03-18 01:57:06.616 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:57:06.616 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:57:06.776 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:57:06.776 -07 000000455 INF: FPGA: Recv YRDPOS 141368
17-03-18 01:57:06.786 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:57:06.786 -07 000000608 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:57:06.806 -07 000000608 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:57:06.806 -07 000000608 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:57:06.806 -07 000000608 INF: Y Motor: Moved to 69.0273 after 1450 ms (table move)
17-03-18 01:57:06.816 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136612 mm (DAC = 29843)
17-03-18 01:57:06.816 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:06.816 -07 000000438 INF: FPGA: Recv ZSGSRD 30557
17-03-18 01:57:06.826 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:06.826 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:06.826 -07 000000606 INF: FPGA: Recv ZSGSRD 30560
17-03-18 01:57:06.836 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:06.836 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:06.836 -07 000000608 INF: FPGA: Recv ZSGSRD 30561
17-03-18 01:57:06.846 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:06.846 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:06.846 -07 000000606 INF: FPGA: Recv ZSGSRD 30554
17-03-18 01:57:06.856 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:06.856 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:06.856 -07 000000455 INF: FPGA: Recv ZSGSRD 30551
17-03-18 01:57:06.866 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:06.866 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:06.866 -07 000000438 INF: FPGA: Recv ZSGSRD 30558
17-03-18 01:57:06.876 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:06.876 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:06.876 -07 000000455 INF: FPGA: Recv ZSGSRD 30554
17-03-18 01:57:06.886 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:06.886 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:06.886 -07 000000606 INF: FPGA: Recv ZSGSRD 30552
17-03-18 01:57:06.896 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:06.896 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:06.896 -07 000000608 INF: FPGA: Recv ZSGSRD 30552
17-03-18 01:57:06.906 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:06.906 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:06.906 -07 000000462 INF: FPGA: Recv ZSGSRD 30559
17-03-18 01:57:06.916 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:06.916 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:57:06.916 -07 000000606 INF: FPGA: Recv ZPIEZORD 26416
17-03-18 01:57:06.926 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:06.926 -07 000000592 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.554 V. Piezo Error = -9.1 V.
17-03-18 01:57:06.926 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30556 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30556 (-135.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30551 (-135.8 uncal um), Max = 30561 (-135.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:57:06.926 -07 000000592 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30556, posNoise = 5, negNoise = 5
17-03-18 01:57:06.926 -07 000000592 INF: Z Motor: After move to -0.136612, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:57:06.926 -07 000000592 INF: Z Motor: Settle wait time = 1450 ms, measure time = 110 ms (allowed 150 ms), total time = 1560 ms
17-03-18 01:57:06.926 -07 000000592 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:57:06.966 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-18 01:57:06.966 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:57:06.966 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:57:06.966 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:57:06.966 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:57:06.966 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:57:06.966 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:57:06.966 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:57:06.966 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:57:06.966 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:57:06.976 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:57:06.976 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:57:06.986 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 01:57:06.986 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 01:57:06.986 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:57:07.036 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:57:07.336 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:57:07.336 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:57:07.336 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:57:07.336 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 01:57:07.376 -07 000000455 INF: FPGA: Recv @CAMSNAP 381
17-03-18 01:57:07.376 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 01:57:07.376 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 383 ms to get response, and 388 ms overall
17-03-18 01:57:07.456 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 121 ms.
17-03-18 01:57:07.456 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:07.456 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:57:07.456 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-18 01:57:07.476 -07 000000438 INF: Autofocus start
17-03-18 01:57:07.476 -07 000000438 INF: MeasureProfile start
17-03-18 01:57:07.476 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:57:07.476 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:57:07.486 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:57:07.486 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:57:07.486 -07 000000438 INF: MeasureProfile done
17-03-18 01:57:07.486 -07 000000438 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:57:07.486 -07 000000438 INF: Autofocus finished
17-03-18 01:57:07.686 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:57:07.686 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:57:07.686 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.136621578214783. ----------
17-03-18 01:57:07.696 -07 000000610 INF: Cycle	93	Tile	12	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:57:07.696 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28350, sync = True, waitForSettling = True)
17-03-18 01:57:07.696 -07 000000610 INF: Z Motor: Moving to -0.129778 mm, started at -0.136622 mm, distance = 6.84 um
17-03-18 01:57:07.696 -07 000000610 INF: FPGA: Xmit ZDACW 28350\n [Z Motor]
17-03-18 01:57:07.696 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 01:57:07.706 -07 000000610 INF: FPGA: 'ZDACW 28350' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:57:07.706 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:57:07.706 -07 000000608 INF: FPGA: Recv ZDACR 28350
17-03-18 01:57:07.716 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:07.716 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:57:07.865 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:07.865 -07 000000462 INF: FPGA: Recv ZSGSRD 29492
17-03-18 01:57:07.875 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:57:07.875 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:07.875 -07 000000626 INF: FPGA: Recv ZSGSRD 29495
17-03-18 01:57:07.885 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:07.885 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:07.885 -07 000000462 INF: FPGA: Recv ZSGSRD 29490
17-03-18 01:57:07.895 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:07.895 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:07.895 -07 000000608 INF: FPGA: Recv ZSGSRD 29491
17-03-18 01:57:07.905 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:07.905 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:07.905 -07 000000462 INF: FPGA: Recv ZSGSRD 29493
17-03-18 01:57:07.915 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:07.915 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:07.915 -07 000000608 INF: FPGA: Recv ZSGSRD 29491
17-03-18 01:57:07.925 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:07.925 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:07.925 -07 000000455 INF: FPGA: Recv ZSGSRD 29495
17-03-18 01:57:07.935 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:07.935 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:07.935 -07 000000462 INF: FPGA: Recv ZSGSRD 29494
17-03-18 01:57:07.945 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:07.945 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:07.945 -07 000000455 INF: FPGA: Recv ZSGSRD 29490
17-03-18 01:57:07.955 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:07.955 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:07.955 -07 000000462 INF: FPGA: Recv ZSGSRD 29492
17-03-18 01:57:07.965 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:07.965 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:57:07.965 -07 000000455 INF: FPGA: Recv ZPIEZORD 25021
17-03-18 01:57:07.975 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:07.975 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.326 V. Piezo Error = -9.8 V.
17-03-18 01:57:07.975 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29492 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29492 (-129.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29490 (-129.0 uncal um), Max = 29495 (-129.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 01:57:07.975 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29492, posNoise = 3, negNoise = 2
17-03-18 01:57:07.975 -07 000000610 INF: Z Motor: After move to -0.129778, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:57:07.975 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:57:07.975 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:57:07.975 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:57:07.975 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:57:07.975 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:57:07.975 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:57:07.975 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:57:07.975 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:57:07.975 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:57:07.975 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:57:07.975 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:57:07.975 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:57:07.975 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:57:07.985 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:57:07.985 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:57:07.985 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:57:07.985 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:57:07.995 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:57:07.995 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:57:07.995 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:57:07.995 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:57:07.995 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28527 150\n [Camera]
17-03-18 01:57:08.195 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:57:08.595 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:57:08.595 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:57:08.595 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:57:08.595 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:57:08.595 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 01:57:08.595 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:57:08.595 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:57:08.595 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:57:08.595 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:57:08.595 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 01:57:08.785 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28527 777
17-03-18 01:57:08.935 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:57:08.975 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 01:57:08.975 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 01:57:08.975 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:08.985 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:57:08.985 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 01:57:08.985 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:57:08.985 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:08.985 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:57:08.985 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:57:08.985 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 01:57:09.115 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:57:09.115 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:57:09.125 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:57:09.125 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:57:09.125 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 01:57:09.125 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:57:09.125 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:57:09.125 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:57:09.125 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:57:09.125 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 01:57:09.314 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 01:57:09.314 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:57:09.314 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28527 150' command took 2 ms to send, 1311 ms to get response, and 1315 ms overall
17-03-18 01:57:09.314 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:57:09.314 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.129786216495949. ------
17-03-18 01:57:09.314 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:57:09.314 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13623 mm
17-03-18 01:57:09.314 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:57:09.324 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 01:57:09.324 -07 000000467 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 01:57:09.324 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29759, sync = True, waitForSettling = False)
17-03-18 01:57:09.324 -07 000000626 INF: Z Motor: Moving to -0.136228 mm, started at -0.129786 mm, distance = -6.44 um
17-03-18 01:57:09.324 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:57:09.324 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:57:09.324 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:57:09.324 -07 000000606 INF: FPGA: Recv YRDPOS 141369
17-03-18 01:57:09.334 -07 000000467 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:57:09.334 -07 000000467 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:57:09.334 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:57:09.334 -07 000000467 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:57:09.334 -07 000000467 INF: Y Motor: Moving 1352 steps-31
17-03-18 01:57:09.344 -07 000000626 INF: FPGA: Xmit ZDACW 29759\n [Z Motor]
17-03-18 01:57:09.344 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 01:57:09.354 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:57:09.354 -07 000000626 INF: FPGA: 'ZDACW 29759' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 01:57:09.364 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:57:09.364 -07 000000629 INF: FPGA: Recv ZDACR 29759
17-03-18 01:57:09.374 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:57:09.374 -07 000000626 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 01:57:09.524 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:57:09.524 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:57:09.524 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:09.524 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:57:09.524 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:57:09.524 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:09.524 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:57:09.524 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 01:57:09.524 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:57:09.534 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 01:57:09.534 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:57:09.534 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 01:57:09.724 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 01:57:09.724 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 01:57:09.774 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:57:09.774 -07 000000606 INF: FPGA: Recv YRDPOS 143080
17-03-18 01:57:09.784 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:57:09.784 -07 000000467 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:57:09.784 -07 000000467 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 01:57:09.784 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.845 mm, average velocity = 2.151 mm/sec
17-03-18 01:57:10.554 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.039839,
17-03-18 01:57:10.734 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:57:10.734 -07 000000626 INF: FPGA: Recv YRDPOS 143080
17-03-18 01:57:10.744 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:57:10.744 -07 000000467 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:57:10.763 -07 000000467 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:57:10.763 -07 000000467 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:57:10.763 -07 000000467 INF: Y Motor: Moved to 69.8633 after 1447 ms (table move)
17-03-18 01:57:10.773 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136228 mm (DAC = 29759)
17-03-18 01:57:10.773 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:10.773 -07 000000467 INF: FPGA: Recv ZSGSRD 30501
17-03-18 01:57:10.783 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:57:10.783 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:10.783 -07 000000467 INF: FPGA: Recv ZSGSRD 30498
17-03-18 01:57:10.793 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:10.793 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:10.793 -07 000000467 INF: FPGA: Recv ZSGSRD 30499
17-03-18 01:57:10.803 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:10.803 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:10.803 -07 000000467 INF: FPGA: Recv ZSGSRD 30499
17-03-18 01:57:10.813 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:10.813 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:10.813 -07 000000561 INF: FPGA: Recv ZSGSRD 30494
17-03-18 01:57:10.823 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:10.823 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:10.823 -07 000000606 INF: FPGA: Recv ZSGSRD 30490
17-03-18 01:57:10.833 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:10.833 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:10.833 -07 000000592 INF: FPGA: Recv ZSGSRD 30498
17-03-18 01:57:10.843 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:10.843 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:10.843 -07 000000606 INF: FPGA: Recv ZSGSRD 30493
17-03-18 01:57:10.853 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:10.853 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:10.853 -07 000000592 INF: FPGA: Recv ZSGSRD 30491
17-03-18 01:57:10.863 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:10.863 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:10.863 -07 000000608 INF: FPGA: Recv ZSGSRD 30501
17-03-18 01:57:10.873 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:10.873 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:57:10.873 -07 000000569 INF: FPGA: Recv ZPIEZORD 26329
17-03-18 01:57:10.883 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:10.883 -07 000000462 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.541 V. Piezo Error = -9.2 V.
17-03-18 01:57:10.883 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.2 um, Read 10 ADC samples: Avg = 30496 (-135.4 uncal um), Error = 0.8 uncal um, Median = 30498 (-135.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30490 (-135.4 uncal um), Max = 30501 (-135.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:57:10.883 -07 000000462 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30496, posNoise = 5, negNoise = 6
17-03-18 01:57:10.883 -07 000000462 INF: Z Motor: After move to -0.136228, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:57:10.883 -07 000000462 INF: Z Motor: Settle wait time = 1451 ms, measure time = 108 ms (allowed 150 ms), total time = 1559 ms
17-03-18 01:57:10.883 -07 000000462 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:57:10.933 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 01:57:10.933 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:57:10.933 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:57:10.933 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:57:10.933 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:57:10.933 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:57:10.933 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:57:10.933 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:57:10.933 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:57:10.933 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:57:10.943 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:57:10.943 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:57:10.953 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 01:57:10.953 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 01:57:10.953 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:57:10.993 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:57:11.293 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:57:11.293 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:57:11.293 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:57:11.303 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-18 01:57:11.333 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:57:11.333 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 01:57:11.333 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 01:57:11.423 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 01:57:11.423 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:11.423 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:57:11.423 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 01:57:11.433 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:57:11.433 -07 000000561 INF: Autofocus start
17-03-18 01:57:11.433 -07 000000561 INF: MeasureProfile start
17-03-18 01:57:11.433 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:57:11.443 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:57:11.443 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:57:11.453 -07 000000561 INF: MeasureProfile done
17-03-18 01:57:11.453 -07 000000561 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:57:11.453 -07 000000561 INF: Autofocus finished
17-03-18 01:57:11.613 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:57:11.613 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:57:11.643 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:57:11.643 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:57:11.643 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.136236125486277. ----------
17-03-18 01:57:11.643 -07 000000610 INF: Cycle	93	Tile	13	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:57:11.653 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28283, sync = True, waitForSettling = True)
17-03-18 01:57:11.653 -07 000000610 INF: Z Motor: Moving to -0.129471 mm, started at -0.136236 mm, distance = 6.76 um
17-03-18 01:57:11.653 -07 000000610 INF: FPGA: Xmit ZDACW 28283\n [Z Motor]
17-03-18 01:57:11.653 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 01:57:11.663 -07 000000610 INF: FPGA: 'ZDACW 28283' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:57:11.663 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:57:11.663 -07 000000592 INF: FPGA: Recv ZDACR 28283
17-03-18 01:57:11.673 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:11.673 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:57:11.823 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:11.823 -07 000000606 INF: FPGA: Recv ZSGSRD 29443
17-03-18 01:57:11.833 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:57:11.833 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:11.833 -07 000000467 INF: FPGA: Recv ZSGSRD 29449
17-03-18 01:57:11.843 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:11.843 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:11.843 -07 000000606 INF: FPGA: Recv ZSGSRD 29444
17-03-18 01:57:11.853 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:11.853 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:11.853 -07 000000561 INF: FPGA: Recv ZSGSRD 29437
17-03-18 01:57:11.863 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:11.863 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:11.863 -07 000000608 INF: FPGA: Recv ZSGSRD 29444
17-03-18 01:57:11.873 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:11.873 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:11.873 -07 000000561 INF: FPGA: Recv ZSGSRD 29446
17-03-18 01:57:11.883 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:11.883 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:11.883 -07 000000592 INF: FPGA: Recv ZSGSRD 29446
17-03-18 01:57:11.893 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:11.893 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:11.893 -07 000000608 INF: FPGA: Recv ZSGSRD 29439
17-03-18 01:57:11.903 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:11.903 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:11.903 -07 000000592 INF: FPGA: Recv ZSGSRD 29439
17-03-18 01:57:11.913 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:11.913 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:11.913 -07 000000462 INF: FPGA: Recv ZSGSRD 29449
17-03-18 01:57:11.923 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:11.923 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:57:11.923 -07 000000569 INF: FPGA: Recv ZPIEZORD 24987
17-03-18 01:57:11.933 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:11.933 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.316 V. Piezo Error = -9.8 V.
17-03-18 01:57:11.933 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29444 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29444 (-128.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29437 (-128.7 uncal um), Max = 29449 (-128.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:57:11.933 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29444, posNoise = 5, negNoise = 7
17-03-18 01:57:11.933 -07 000000610 INF: Z Motor: After move to -0.129471, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:57:11.933 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:57:11.933 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:57:11.933 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:57:11.933 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:57:11.933 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:57:11.933 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:57:11.933 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:57:11.933 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:57:11.933 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:57:11.933 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:57:11.933 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:57:11.933 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:57:11.933 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:57:11.943 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:57:11.943 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:57:11.943 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:57:11.943 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:57:11.953 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:57:11.953 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:57:11.953 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:57:11.953 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:57:11.953 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28460 150\n [Camera]
17-03-18 01:57:12.153 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:57:12.542 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:57:12.542 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:57:12.542 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:57:12.542 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:57:12.542 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 01:57:12.542 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:57:12.542 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:57:12.542 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:57:12.542 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:57:12.542 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 01:57:12.732 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28460 777
17-03-18 01:57:12.882 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:57:12.942 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 01:57:12.942 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:57:12.942 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:12.942 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 01:57:12.942 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 01:57:12.942 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:12.942 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:57:12.942 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 01:57:12.952 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:57:12.952 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:57:13.072 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1116
17-03-18 01:57:13.072 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1116
17-03-18 01:57:13.072 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:57:13.072 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:57:13.072 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 01:57:13.072 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1116
17-03-18 01:57:13.072 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1116
17-03-18 01:57:13.082 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:57:13.082 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:57:13.082 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 01:57:13.262 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 01:57:13.262 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:57:13.262 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28460 150' command took 2 ms to send, 1307 ms to get response, and 1314 ms overall
17-03-18 01:57:13.262 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:57:13.262 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.129477854313145. ------
17-03-18 01:57:13.272 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:57:13.272 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13536 mm
17-03-18 01:57:13.272 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:57:13.272 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:57:13.282 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:57:13.282 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29570, sync = True, waitForSettling = False)
17-03-18 01:57:13.282 -07 000000462 INF: Z Motor: Moving to -0.135363 mm, started at -0.129478 mm, distance = -5.88 um
17-03-18 01:57:13.282 -07 000000462 INF: FPGA: Xmit ZDACW 29570\n [Z Motor]
17-03-18 01:57:13.282 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 01:57:13.282 -07 000000561 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-18 01:57:13.282 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:57:13.292 -07 000000462 INF: FPGA: 'ZDACW 29570' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:13.292 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:57:13.292 -07 000000444 INF: FPGA: Recv YRDPOS 143080
17-03-18 01:57:13.302 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 01:57:13.302 -07 000000561 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:57:13.302 -07 000000561 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:57:13.302 -07 000000561 INF: Y Motor: Moving 1343 steps-19
17-03-18 01:57:13.302 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:57:13.312 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:57:13.312 -07 000000626 INF: FPGA: Recv ZDACR 29570
17-03-18 01:57:13.322 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:57:13.322 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:57:13.322 -07 000000462 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 01:57:13.462 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 01:57:13.462 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 01:57:13.462 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:13.462 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:57:13.472 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 01:57:13.472 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:57:13.472 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:13.472 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:57:13.472 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:57:13.472 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 01:57:13.502 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:57:13.502 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 01:57:13.692 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 01:57:13.692 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:57:13.751 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:57:13.751 -07 000000569 INF: FPGA: Recv YRDPOS 144770
17-03-18 01:57:13.761 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 01:57:13.761 -07 000000561 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:57:13.761 -07 000000561 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 01:57:13.761 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-18 01:57:14.711 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:57:14.711 -07 000000626 INF: FPGA: Recv YRDPOS 144770
17-03-18 01:57:14.721 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:57:14.721 -07 000000561 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:57:14.741 -07 000000561 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:57:14.741 -07 000000561 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:57:14.741 -07 000000561 INF: Y Motor: Moved to 70.6885 after 1466 ms (table move)
17-03-18 01:57:14.751 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135363 mm (DAC = 29570)
17-03-18 01:57:14.751 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:14.751 -07 000000629 INF: FPGA: Recv ZSGSRD 30364
17-03-18 01:57:14.761 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:57:14.761 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:14.761 -07 000000444 INF: FPGA: Recv ZSGSRD 30361
17-03-18 01:57:14.771 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:14.771 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:14.771 -07 000000611 INF: FPGA: Recv ZSGSRD 30362
17-03-18 01:57:14.781 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:14.781 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:14.781 -07 000000626 INF: FPGA: Recv ZSGSRD 30364
17-03-18 01:57:14.791 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:14.791 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:14.791 -07 000000592 INF: FPGA: Recv ZSGSRD 30361
17-03-18 01:57:14.801 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:14.801 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:14.801 -07 000000467 INF: FPGA: Recv ZSGSRD 30360
17-03-18 01:57:14.811 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:14.811 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:14.811 -07 000000462 INF: FPGA: Recv ZSGSRD 30357
17-03-18 01:57:14.821 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:14.821 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:14.821 -07 000000626 INF: FPGA: Recv ZSGSRD 30360
17-03-18 01:57:14.831 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:14.831 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:14.831 -07 000000629 INF: FPGA: Recv ZSGSRD 30362
17-03-18 01:57:14.841 -07 000000606 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:14.841 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:14.841 -07 000000611 INF: FPGA: Recv ZSGSRD 30363
17-03-18 01:57:14.851 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:14.851 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:57:14.851 -07 000000592 INF: FPGA: Recv ZPIEZORD 26203
17-03-18 01:57:14.861 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:14.861 -07 000000606 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.512 V. Piezo Error = -9.1 V.
17-03-18 01:57:14.861 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30361 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30362 (-134.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30357 (-134.6 uncal um), Max = 30364 (-134.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:57:14.861 -07 000000606 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30361, posNoise = 3, negNoise = 4
17-03-18 01:57:14.861 -07 000000606 INF: Z Motor: After move to -0.135363, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:57:14.861 -07 000000606 INF: Z Motor: Settle wait time = 1470 ms, measure time = 110 ms (allowed 150 ms), total time = 1580 ms
17-03-18 01:57:14.861 -07 000000606 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:57:14.901 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 01:57:14.901 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:57:14.901 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:57:14.901 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:57:14.901 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:57:14.901 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:57:14.901 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:57:14.901 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:57:14.901 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:57:14.901 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:57:14.911 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:57:14.911 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:57:14.921 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:57:14.921 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 01:57:14.921 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:57:14.971 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-18 01:57:15.270 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 01:57:15.270 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 01:57:15.270 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:57:15.270 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-18 01:57:15.310 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:57:15.310 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 01:57:15.310 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 01:57:15.400 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:57:15.400 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:15.400 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 01:57:15.400 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:57:15.410 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:57:15.410 -07 000000585 INF: Autofocus start
17-03-18 01:57:15.410 -07 000000585 INF: MeasureProfile start
17-03-18 01:57:15.410 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:57:15.420 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:57:15.420 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:57:15.420 -07 000000585 INF: MeasureProfile done
17-03-18 01:57:15.420 -07 000000585 INF: X=128  Z correction [um]=0.5917814
17-03-18 01:57:15.420 -07 000000585 INF: Autofocus finished
17-03-18 01:57:15.620 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:57:15.620 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 01:57:15.620 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.135368856847139. ----------
17-03-18 01:57:15.620 -07 000000610 INF: Cycle	93	Tile	14	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:57:15.630 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28212, sync = True, waitForSettling = True)
17-03-18 01:57:15.630 -07 000000610 INF: Z Motor: Moving to -0.129146 mm, started at -0.135369 mm, distance = 6.22 um
17-03-18 01:57:15.630 -07 000000610 INF: FPGA: Xmit ZDACW 28212\n [Z Motor]
17-03-18 01:57:15.630 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 01:57:15.640 -07 000000610 INF: FPGA: 'ZDACW 28212' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:57:15.640 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:57:15.640 -07 000000561 INF: FPGA: Recv ZDACR 28212
17-03-18 01:57:15.650 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:15.650 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:57:15.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:15.800 -07 000000585 INF: FPGA: Recv ZSGSRD 29397
17-03-18 01:57:15.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:57:15.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:15.810 -07 000000569 INF: FPGA: Recv ZSGSRD 29396
17-03-18 01:57:15.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:15.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:15.820 -07 000000629 INF: FPGA: Recv ZSGSRD 29395
17-03-18 01:57:15.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:15.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:15.830 -07 000000626 INF: FPGA: Recv ZSGSRD 29394
17-03-18 01:57:15.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:15.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:15.840 -07 000000592 INF: FPGA: Recv ZSGSRD 29394
17-03-18 01:57:15.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:15.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:15.850 -07 000000569 INF: FPGA: Recv ZSGSRD 29390
17-03-18 01:57:15.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:15.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:15.860 -07 000000461 INF: FPGA: Recv ZSGSRD 29392
17-03-18 01:57:15.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:15.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:15.870 -07 000000438 INF: FPGA: Recv ZSGSRD 29393
17-03-18 01:57:15.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:15.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:15.880 -07 000000462 INF: FPGA: Recv ZSGSRD 29394
17-03-18 01:57:15.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:15.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:15.890 -07 000000626 INF: FPGA: Recv ZSGSRD 29395
17-03-18 01:57:15.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:15.910 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:57:15.910 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.050752,
17-03-18 01:57:15.910 -07 000000467 INF: FPGA: Recv ZPIEZORD 24950
17-03-18 01:57:15.920 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:57:15.920 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.305 V. Piezo Error = -9.7 V.
17-03-18 01:57:15.920 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29394 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29394 (-128.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29390 (-128.4 uncal um), Max = 29397 (-128.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:57:15.920 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29394, posNoise = 3, negNoise = 4
17-03-18 01:57:15.920 -07 000000610 INF: Z Motor: After move to -0.129146, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:57:15.920 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 01:57:15.920 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:57:15.920 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:57:15.920 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:57:15.920 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:57:15.920 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:57:15.920 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:57:15.920 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:57:15.920 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:57:15.920 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:57:15.920 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:57:15.920 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 01:57:15.920 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:57:15.930 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:57:15.930 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:57:15.930 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:57:15.930 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:57:15.940 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:57:15.940 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:57:15.940 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 01:57:15.940 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:57:15.960 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28389 150\n [Camera]
17-03-18 01:57:16.150 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:57:16.550 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:57:16.550 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:57:16.550 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:57:16.550 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:57:16.550 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 01:57:16.550 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:57:16.550 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:57:16.550 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:57:16.550 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:57:16.550 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 01:57:16.610 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:57:16.610 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:57:16.739 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28389 777
17-03-18 01:57:16.889 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 01:57:16.939 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:57:16.939 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:57:16.939 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:16.949 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 01:57:16.949 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 01:57:16.949 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:16.949 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:57:16.949 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:57:16.949 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:57:16.959 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 01:57:17.079 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:57:17.079 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:57:17.079 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:57:17.209 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:57:17.209 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:57:17.219 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:57:17.219 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:57:17.219 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 01:57:17.219 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:57:17.219 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:57:17.269 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 01:57:17.269 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:57:17.269 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28389 150' command took 2 ms to send, 1307 ms to get response, and 1333 ms overall
17-03-18 01:57:17.269 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:57:17.269 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.129156643706057. ------
17-03-18 01:57:17.279 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:57:17.279 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13585 mm
17-03-18 01:57:17.279 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:57:17.279 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:57:17.279 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 01:57:17.279 -07 000000629 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 01:57:17.279 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 29677, sync = True, waitForSettling = False)
17-03-18 01:57:17.279 -07 000000611 INF: Z Motor: Moving to -0.135853 mm, started at -0.129157 mm, distance = -6.70 um
17-03-18 01:57:17.289 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:57:17.289 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:57:17.289 -07 000000626 INF: FPGA: Recv YRDPOS 144770
17-03-18 01:57:17.299 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:57:17.299 -07 000000629 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:57:17.299 -07 000000629 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:57:17.299 -07 000000629 INF: Y Motor: Moving 1351 steps-29
17-03-18 01:57:17.299 -07 000000611 INF: FPGA: Xmit ZDACW 29677\n [Z Motor]
17-03-18 01:57:17.299 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:57:17.309 -07 000000611 INF: FPGA: 'ZDACW 29677' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 01:57:17.309 -07 000000592 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:57:17.319 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:57:17.329 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:57:17.329 -07 000000626 INF: FPGA: Recv ZDACR 29677
17-03-18 01:57:17.339 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:57:17.339 -07 000000611 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 01:57:17.509 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:57:17.509 -07 000000592 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 01:57:17.609 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 01:57:17.609 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 01:57:17.609 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:17.609 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:57:17.609 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:57:17.619 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:17.619 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:57:17.619 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:57:17.619 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 539 ms.
17-03-18 01:57:17.629 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 01:57:17.689 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 01:57:17.689 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-18 01:57:17.739 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:57:17.739 -07 000000462 INF: FPGA: Recv YRDPOS 146471
17-03-18 01:57:17.749 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:57:17.749 -07 000000629 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:57:17.749 -07 000000629 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 01:57:17.749 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 01:57:18.698 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:57:18.698 -07 000000438 INF: FPGA: Recv YRDPOS 146471
17-03-18 01:57:18.708 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:57:18.708 -07 000000629 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:57:18.728 -07 000000629 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:57:18.728 -07 000000629 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:57:18.728 -07 000000629 INF: Y Motor: Moved to 71.5190 after 1448 ms (table move)
17-03-18 01:57:18.738 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135853 mm (DAC = 29677)
17-03-18 01:57:18.738 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:18.738 -07 000000462 INF: FPGA: Recv ZSGSRD 30436
17-03-18 01:57:18.748 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:57:18.748 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:18.748 -07 000000629 INF: FPGA: Recv ZSGSRD 30433
17-03-18 01:57:18.758 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:18.758 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:18.758 -07 000000592 INF: FPGA: Recv ZSGSRD 30440
17-03-18 01:57:18.768 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:18.768 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:18.768 -07 000000611 INF: FPGA: Recv ZSGSRD 30429
17-03-18 01:57:18.778 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:18.788 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:18.788 -07 000000438 INF: FPGA: Recv ZSGSRD 30449
17-03-18 01:57:18.798 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:57:18.798 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:18.798 -07 000000592 INF: FPGA: Recv ZSGSRD 30432
17-03-18 01:57:18.808 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:18.808 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:18.808 -07 000000626 INF: FPGA: Recv ZSGSRD 30433
17-03-18 01:57:18.818 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:18.818 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:18.818 -07 000000462 INF: FPGA: Recv ZSGSRD 30435
17-03-18 01:57:18.828 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:18.828 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:18.828 -07 000000611 INF: FPGA: Recv ZSGSRD 30442
17-03-18 01:57:18.838 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:18.838 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:18.838 -07 000000462 INF: FPGA: Recv ZSGSRD 30439
17-03-18 01:57:18.848 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:18.848 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:57:18.848 -07 000000611 INF: FPGA: Recv ZPIEZORD 26333
17-03-18 01:57:18.858 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:18.858 -07 000000467 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.528 V. Piezo Error = -9.0 V.
17-03-18 01:57:18.858 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.9 um, Read 10 ADC samples: Avg = 30437 (-135.1 uncal um), Error = 0.8 uncal um, Median = 30436 (-135.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30429 (-135.0 uncal um), Max = 30449 (-135.1 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 01:57:18.858 -07 000000467 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30437, posNoise = 12, negNoise = 8
17-03-18 01:57:18.858 -07 000000467 INF: Z Motor: After move to -0.135853, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:57:18.858 -07 000000467 INF: Z Motor: Settle wait time = 1452 ms, measure time = 119 ms (allowed 150 ms), total time = 1571 ms
17-03-18 01:57:18.858 -07 000000467 INF: Z Motor: Waiting extra 31 ms after reading position to reach expected total of 150 ms
17-03-18 01:57:18.898 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 01:57:18.898 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:57:18.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:57:18.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:57:18.898 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:57:18.898 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:57:18.898 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:57:18.898 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:57:18.898 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:57:18.898 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:57:18.908 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:57:18.908 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:57:18.918 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 01:57:18.918 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 01:57:18.918 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:57:18.958 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:57:19.258 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:57:19.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:57:19.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:57:19.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) start.
17-03-18 01:57:19.298 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:57:19.298 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 01:57:19.298 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 01:57:19.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) end. Duration was 124 ms.
17-03-18 01:57:19.388 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:19.388 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:57:19.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 01:57:19.498 -07 000000626 INF: Autofocus start
17-03-18 01:57:19.498 -07 000000626 INF: MeasureProfile start
17-03-18 01:57:19.498 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:57:19.498 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:57:19.508 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:57:19.508 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:57:19.508 -07 000000626 INF: MeasureProfile done
17-03-18 01:57:19.508 -07 000000626 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:57:19.508 -07 000000626 INF: Autofocus finished
17-03-18 01:57:19.707 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:57:19.707 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:57:19.707 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.135857096969913. ----------
17-03-18 01:57:19.717 -07 000000610 INF: Cycle	93	Tile	15	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:57:19.717 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28184, sync = True, waitForSettling = True)
17-03-18 01:57:19.717 -07 000000610 INF: Z Motor: Moving to -0.129018 mm, started at -0.135857 mm, distance = 6.84 um
17-03-18 01:57:19.717 -07 000000610 INF: FPGA: Xmit ZDACW 28184\n [Z Motor]
17-03-18 01:57:19.717 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 01:57:19.727 -07 000000610 INF: FPGA: 'ZDACW 28184' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:57:19.727 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:57:19.727 -07 000000592 INF: FPGA: Recv ZDACR 28184
17-03-18 01:57:19.737 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:19.737 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:57:19.887 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:19.887 -07 000000455 INF: FPGA: Recv ZSGSRD 29375
17-03-18 01:57:19.897 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:57:19.897 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:19.897 -07 000000629 INF: FPGA: Recv ZSGSRD 29377
17-03-18 01:57:19.907 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:19.907 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:19.907 -07 000000455 INF: FPGA: Recv ZSGSRD 29372
17-03-18 01:57:19.917 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:19.917 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:19.917 -07 000000611 INF: FPGA: Recv ZSGSRD 29373
17-03-18 01:57:19.927 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:19.927 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:19.927 -07 000000455 INF: FPGA: Recv ZSGSRD 29377
17-03-18 01:57:19.937 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:19.937 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:19.937 -07 000000626 INF: FPGA: Recv ZSGSRD 29369
17-03-18 01:57:19.947 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:19.947 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:19.947 -07 000000455 INF: FPGA: Recv ZSGSRD 29372
17-03-18 01:57:19.957 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:19.957 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:19.957 -07 000000626 INF: FPGA: Recv ZSGSRD 29376
17-03-18 01:57:19.967 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:19.967 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:19.967 -07 000000455 INF: FPGA: Recv ZSGSRD 29368
17-03-18 01:57:19.977 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:19.977 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:19.977 -07 000000626 INF: FPGA: Recv ZSGSRD 29372
17-03-18 01:57:19.987 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:19.987 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:57:19.987 -07 000000467 INF: FPGA: Recv ZPIEZORD 24928
17-03-18 01:57:19.997 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:19.997 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.301 V. Piezo Error = -9.8 V.
17-03-18 01:57:19.997 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.0 um, Read 10 ADC samples: Avg = 29373 (-128.2 uncal um), Error = 0.8 uncal um, Median = 29372 (-128.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29368 (-128.2 uncal um), Max = 29377 (-128.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:57:19.997 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29373, posNoise = 4, negNoise = 5
17-03-18 01:57:19.997 -07 000000610 INF: Z Motor: After move to -0.129018, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:57:19.997 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:57:19.997 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:57:19.997 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:57:19.997 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:57:19.997 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:57:19.997 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:57:19.997 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:57:19.997 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:57:19.997 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:57:19.997 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:57:19.997 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:57:19.997 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:57:19.997 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:57:20.007 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:57:20.007 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:57:20.007 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:57:20.007 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:57:20.017 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 01:57:20.017 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 01:57:20.017 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:57:20.017 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 01:57:20.027 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28361 150\n [Camera]
17-03-18 01:57:20.227 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:57:20.617 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:57:20.617 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:57:20.617 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:57:20.617 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:57:20.617 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:57:20.617 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:57:20.617 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:57:20.617 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 01:57:20.627 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:57:20.627 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 01:57:20.807 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28361 777
17-03-18 01:57:20.967 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 01:57:21.017 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 01:57:21.017 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 01:57:21.017 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:21.017 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:57:21.017 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 01:57:21.027 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 01:57:21.027 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:57:21.027 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:21.027 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:57:21.037 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 01:57:21.147 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:57:21.147 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:57:21.147 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:57:21.266 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:57:21.266 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:57:21.266 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:57:21.276 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:57:21.276 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:57:21.276 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:57:21.276 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:57:21.276 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.043918,
17-03-18 01:57:21.336 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:57:21.336 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:57:21.336 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28361 150' command took 2 ms to send, 1306 ms to get response, and 1314 ms overall
17-03-18 01:57:21.336 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:57:21.336 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.12902173525108. ------
17-03-18 01:57:21.346 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:57:21.346 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13536 mm
17-03-18 01:57:21.346 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:57:21.346 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29569, sync = True, waitForSettling = False)
17-03-18 01:57:21.346 -07 000000626 INF: Z Motor: Moving to -0.135358 mm, started at -0.129022 mm, distance = -6.34 um
17-03-18 01:57:21.346 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 01:57:21.346 -07 000000438 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 01:57:21.356 -07 000000626 INF: FPGA: Xmit ZDACW 29569\n [Z Motor]
17-03-18 01:57:21.366 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:57:21.666 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 01:57:21.666 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:57:21.666 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:57:21.666 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:21.666 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:57:21.666 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:21.676 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:57:21.676 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:57:21.676 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 529 ms.
17-03-18 01:57:21.686 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 01:57:21.686 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:57:21.686 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 01:57:21.686 -07 000000467 INF: FPGA: Recv YRDPOS 146471
17-03-18 01:57:21.686 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:57:21.686 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 313 ms to get response, and 338 ms overall
17-03-18 01:57:21.686 -07 000000438 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:57:21.686 -07 000000438 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:57:21.686 -07 000000438 INF: Y Motor: Moving 1350 steps-28
17-03-18 01:57:21.686 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 333 ms to get response, and 341 ms overall
17-03-18 01:57:21.686 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:57:21.686 -07 000000626 INF: FPGA: 'ZDACW 29569' command took 0 ms to send, 323 ms to get response, and 338 ms overall
17-03-18 01:57:21.686 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:57:21.696 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:57:21.696 -07 000000462 INF: FPGA: Recv ZDACR 29569
17-03-18 01:57:21.706 -07 000000592 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:57:21.706 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 01:57:21.706 -07 000000626 INF: Z Motor: MoveAbsStepped took 355 ms (did NOT wait for settling yet))
17-03-18 01:57:21.906 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:57:21.906 -07 000000592 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 217 ms overall
17-03-18 01:57:22.066 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 01:57:22.066 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 376 ms to get response, and 381 ms overall
17-03-18 01:57:22.106 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:57:22.116 -07 000000462 INF: FPGA: Recv YRDPOS 148172
17-03-18 01:57:22.126 -07 000000438 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:57:22.126 -07 000000438 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:57:22.126 -07 000000438 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 01:57:22.126 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.844 mm, average velocity = 2.214 mm/sec
17-03-18 01:57:23.075 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:57:23.075 -07 000000462 INF: FPGA: Recv YRDPOS 148172
17-03-18 01:57:23.085 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:57:23.085 -07 000000438 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:57:23.105 -07 000000438 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:57:23.105 -07 000000438 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:57:23.105 -07 000000438 INF: Y Motor: Moved to 72.3496 after 1762 ms (table move)
17-03-18 01:57:23.115 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135358 mm (DAC = 29569)
17-03-18 01:57:23.115 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:23.115 -07 000000438 INF: FPGA: Recv ZSGSRD 30359
17-03-18 01:57:23.125 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:23.125 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:23.125 -07 000000592 INF: FPGA: Recv ZSGSRD 30365
17-03-18 01:57:23.135 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:23.135 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:23.135 -07 000000462 INF: FPGA: Recv ZSGSRD 30357
17-03-18 01:57:23.145 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:23.145 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:23.145 -07 000000626 INF: FPGA: Recv ZSGSRD 30366
17-03-18 01:57:23.155 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:23.155 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:23.155 -07 000000467 INF: FPGA: Recv ZSGSRD 30359
17-03-18 01:57:23.165 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:23.165 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:23.165 -07 000000626 INF: FPGA: Recv ZSGSRD 30358
17-03-18 01:57:23.175 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:23.175 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:23.175 -07 000000626 INF: FPGA: Recv ZSGSRD 30364
17-03-18 01:57:23.185 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:23.185 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:23.185 -07 000000592 INF: FPGA: Recv ZSGSRD 30359
17-03-18 01:57:23.195 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:23.195 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:23.195 -07 000000467 INF: FPGA: Recv ZSGSRD 30363
17-03-18 01:57:23.205 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:23.205 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:23.205 -07 000000592 INF: FPGA: Recv ZSGSRD 30361
17-03-18 01:57:23.215 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:23.215 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:57:23.215 -07 000000626 INF: FPGA: Recv ZPIEZORD 26231
17-03-18 01:57:23.225 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:23.225 -07 000000455 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.512 V. Piezo Error = -9.1 V.
17-03-18 01:57:23.225 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30361 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30360 (-134.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30357 (-134.6 uncal um), Max = 30366 (-134.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:57:23.225 -07 000000455 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30361, posNoise = 5, negNoise = 4
17-03-18 01:57:23.225 -07 000000455 INF: Z Motor: After move to -0.135358, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:57:23.225 -07 000000455 INF: Z Motor: Settle wait time = 1765 ms, measure time = 110 ms (allowed 150 ms), total time = 1875 ms
17-03-18 01:57:23.225 -07 000000455 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 01:57:23.265 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1917 ms
17-03-18 01:57:23.265 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:57:23.265 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:57:23.265 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:57:23.265 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:57:23.265 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:57:23.265 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:57:23.265 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:57:23.265 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:57:23.265 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:57:23.275 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:57:23.275 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:57:23.285 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:57:23.285 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:57:23.285 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:57:23.335 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:57:23.635 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:57:23.635 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:57:23.635 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:57:23.635 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1163922192, 0x0, 559484976) start.
17-03-18 01:57:23.675 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:57:23.675 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 01:57:23.675 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 01:57:23.745 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1163922192, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 01:57:23.745 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:23.755 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:57:23.755 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 01:57:23.775 -07 000000592 INF: Autofocus start
17-03-18 01:57:23.775 -07 000000592 INF: MeasureProfile start
17-03-18 01:57:23.775 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:57:23.775 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:57:23.785 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:57:23.785 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:57:23.785 -07 000000592 INF: MeasureProfile done
17-03-18 01:57:23.785 -07 000000592 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:57:23.785 -07 000000592 INF: Autofocus finished
17-03-18 01:57:23.985 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:57:23.985 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-18 01:57:23.995 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.135368856847139. ----------
17-03-18 01:57:23.995 -07 000000610 INF: Cycle	93	Tile	16	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:57:23.995 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28093, sync = True, waitForSettling = True)
17-03-18 01:57:23.995 -07 000000610 INF: Z Motor: Moving to -0.128602 mm, started at -0.135369 mm, distance = 6.77 um
17-03-18 01:57:23.995 -07 000000610 INF: FPGA: Xmit ZDACW 28093\n [Z Motor]
17-03-18 01:57:23.995 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 01:57:24.005 -07 000000610 INF: FPGA: 'ZDACW 28093' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:57:24.005 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:57:24.005 -07 000000462 INF: FPGA: Recv ZDACR 28093
17-03-18 01:57:24.015 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:24.015 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:57:24.165 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:24.165 -07 000000626 INF: FPGA: Recv ZSGSRD 29307
17-03-18 01:57:24.175 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:24.175 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:24.175 -07 000000592 INF: FPGA: Recv ZSGSRD 29310
17-03-18 01:57:24.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:24.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:24.184 -07 000000455 INF: FPGA: Recv ZSGSRD 29304
17-03-18 01:57:24.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:24.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:24.194 -07 000000592 INF: FPGA: Recv ZSGSRD 29307
17-03-18 01:57:24.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:24.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:24.204 -07 000000467 INF: FPGA: Recv ZSGSRD 29309
17-03-18 01:57:24.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:24.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:24.214 -07 000000462 INF: FPGA: Recv ZSGSRD 29303
17-03-18 01:57:24.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:24.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:24.224 -07 000000561 INF: FPGA: Recv ZSGSRD 29313
17-03-18 01:57:24.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:24.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:24.234 -07 000000467 INF: FPGA: Recv ZSGSRD 29316
17-03-18 01:57:24.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:24.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:24.244 -07 000000561 INF: FPGA: Recv ZSGSRD 29306
17-03-18 01:57:24.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:24.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:24.254 -07 000000438 INF: FPGA: Recv ZSGSRD 29301
17-03-18 01:57:24.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:24.264 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:57:24.264 -07 000000462 INF: FPGA: Recv ZPIEZORD 24834
17-03-18 01:57:24.274 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:24.274 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.287 V. Piezo Error = -9.8 V.
17-03-18 01:57:24.274 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29308 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29307 (-127.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29301 (-127.8 uncal um), Max = 29316 (-127.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:57:24.274 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29308, posNoise = 8, negNoise = 7
17-03-18 01:57:24.274 -07 000000610 INF: Z Motor: After move to -0.128602, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:57:24.274 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:57:24.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:57:24.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:57:24.274 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:57:24.274 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:57:24.274 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:57:24.274 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:57:24.274 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:57:24.274 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:57:24.274 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:57:24.274 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:57:24.274 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:57:24.274 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:57:24.284 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:57:24.284 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:57:24.284 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:57:24.284 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:57:24.294 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 01:57:24.294 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:57:24.294 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 01:57:24.294 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 01:57:24.294 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28270 150\n [Camera]
17-03-18 01:57:24.494 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:57:24.894 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:57:24.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:57:24.894 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:57:24.894 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:57:24.894 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:57:24.894 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:57:24.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:57:24.894 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:57:24.894 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:57:24.894 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:57:25.084 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28270 777
17-03-18 01:57:25.234 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:57:25.274 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 01:57:25.274 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 01:57:25.284 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:25.284 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:57:25.284 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 01:57:25.284 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:57:25.284 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:25.284 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:57:25.284 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:57:25.294 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:57:25.424 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:57:25.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:57:25.424 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:57:25.534 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:57:25.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:57:25.534 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:57:25.544 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:57:25.544 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:57:25.544 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:57:25.544 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:57:25.614 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:57:25.614 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:57:25.614 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28270 150' command took 2 ms to send, 1303 ms to get response, and 1315 ms overall
17-03-18 01:57:25.614 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:57:25.614 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.128604161461865. ------
17-03-18 01:57:25.614 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:57:25.614 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13516 mm
17-03-18 01:57:25.614 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:57:25.624 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 01:57:25.624 -07 000000444 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-18 01:57:25.624 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:57:25.624 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:57:25.624 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:57:25.624 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29525, sync = True, waitForSettling = False)
17-03-18 01:57:25.624 -07 000000438 INF: Z Motor: Moving to -0.135157 mm, started at -0.128604 mm, distance = -6.55 um
17-03-18 01:57:25.624 -07 000000561 INF: FPGA: Recv YRDPOS 148173
17-03-18 01:57:25.634 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:57:25.634 -07 000000444 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:57:25.634 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:57:25.634 -07 000000444 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:57:25.634 -07 000000444 INF: Y Motor: Moving 1348 steps-27
17-03-18 01:57:25.644 -07 000000438 INF: FPGA: Xmit ZDACW 29525\n [Z Motor]
17-03-18 01:57:25.644 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:57:25.654 -07 000000438 INF: FPGA: 'ZDACW 29525' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 01:57:25.654 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:57:25.664 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:57:25.664 -07 000000592 INF: FPGA: Recv ZDACR 29525
17-03-18 01:57:25.673 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:57:25.673 -07 000000438 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 01:57:25.833 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:57:25.833 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-18 01:57:25.943 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:57:25.943 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 01:57:25.943 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:57:25.943 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:25.943 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 01:57:25.943 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:25.943 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:57:25.943 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-18 01:57:25.943 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:57:25.953 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 01:57:26.023 -07 000000592 INF: FPGA: Recv YMVTILE
17-03-18 01:57:26.023 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 389 ms overall
17-03-18 01:57:26.073 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:57:26.073 -07 000000502 INF: FPGA: Recv YRDPOS 149865
17-03-18 01:57:26.083 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:57:26.083 -07 000000444 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:57:26.083 -07 000000444 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 01:57:26.083 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.843 mm, average velocity = 2.167 mm/sec
17-03-18 01:57:26.603 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:57:26.603 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:57:26.633 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.023489,
17-03-18 01:57:27.033 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:57:27.033 -07 000000438 INF: FPGA: Recv YRDPOS 149865
17-03-18 01:57:27.043 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:57:27.043 -07 000000444 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:57:27.063 -07 000000444 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:57:27.063 -07 000000444 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:57:27.063 -07 000000444 INF: Y Motor: Moved to 73.1763 after 1446 ms (table move)
17-03-18 01:57:27.073 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135157 mm (DAC = 29525)
17-03-18 01:57:27.073 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:27.073 -07 000000606 INF: FPGA: Recv ZSGSRD 30327
17-03-18 01:57:27.083 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:27.083 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:27.083 -07 000000444 INF: FPGA: Recv ZSGSRD 30326
17-03-18 01:57:27.093 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:27.093 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:27.093 -07 000000467 INF: FPGA: Recv ZSGSRD 30329
17-03-18 01:57:27.103 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:27.103 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:27.103 -07 000000444 INF: FPGA: Recv ZSGSRD 30336
17-03-18 01:57:27.113 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:27.113 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:27.113 -07 000000438 INF: FPGA: Recv ZSGSRD 30330
17-03-18 01:57:27.123 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:27.123 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:27.123 -07 000000467 INF: FPGA: Recv ZSGSRD 30325
17-03-18 01:57:27.133 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:27.133 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:27.133 -07 000000438 INF: FPGA: Recv ZSGSRD 30324
17-03-18 01:57:27.143 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:27.143 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:27.143 -07 000000444 INF: FPGA: Recv ZSGSRD 30332
17-03-18 01:57:27.153 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:27.153 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:27.153 -07 000000561 INF: FPGA: Recv ZSGSRD 30327
17-03-18 01:57:27.163 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:27.163 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:27.163 -07 000000444 INF: FPGA: Recv ZSGSRD 30328
17-03-18 01:57:27.172 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:27.172 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:57:27.172 -07 000000444 INF: FPGA: Recv ZPIEZORD 26207
17-03-18 01:57:27.182 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:27.182 -07 000000585 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.505 V. Piezo Error = -9.1 V.
17-03-18 01:57:27.182 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.2 um, Read 10 ADC samples: Avg = 30328 (-134.4 uncal um), Error = 0.8 uncal um, Median = 30328 (-134.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30324 (-134.3 uncal um), Max = 30336 (-134.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:57:27.182 -07 000000585 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30328, posNoise = 8, negNoise = 4
17-03-18 01:57:27.182 -07 000000585 INF: Z Motor: After move to -0.135157, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:57:27.182 -07 000000585 INF: Z Motor: Settle wait time = 1448 ms, measure time = 111 ms (allowed 150 ms), total time = 1559 ms
17-03-18 01:57:27.182 -07 000000585 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 01:57:27.222 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-18 01:57:27.222 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:57:27.222 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:57:27.222 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:57:27.222 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:57:27.222 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:57:27.222 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:57:27.222 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:57:27.222 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:57:27.222 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:57:27.222 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:57:27.232 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:57:27.242 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:57:27.242 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:57:27.242 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:57:27.292 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:57:27.592 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:57:27.592 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:57:27.592 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:57:27.592 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 01:57:27.632 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:57:27.632 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 01:57:27.632 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 01:57:27.702 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 01:57:27.702 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:27.712 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:57:27.712 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 01:57:27.732 -07 000000467 INF: Autofocus start
17-03-18 01:57:27.732 -07 000000467 INF: MeasureProfile start
17-03-18 01:57:27.732 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:57:27.732 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:57:27.742 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:57:27.742 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:57:27.742 -07 000000467 INF: MeasureProfile done
17-03-18 01:57:27.742 -07 000000467 INF: X=0  Z correction [um]=-0.02394831
17-03-18 01:57:27.742 -07 000000467 INF: Autofocus finished
17-03-18 01:57:27.942 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:57:27.942 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:57:27.942 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.135156857846461. ----------
17-03-18 01:57:27.952 -07 000000610 INF: Cycle	93	Tile	17	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:57:27.952 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28032, sync = True, waitForSettling = True)
17-03-18 01:57:27.952 -07 000000610 INF: Z Motor: Moving to -0.128322 mm, started at -0.135157 mm, distance = 6.83 um
17-03-18 01:57:27.952 -07 000000610 INF: FPGA: Xmit ZDACW 28032\n [Z Motor]
17-03-18 01:57:27.952 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:57:27.962 -07 000000610 INF: FPGA: 'ZDACW 28032' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:57:27.962 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:57:27.962 -07 000000561 INF: FPGA: Recv ZDACR 28032
17-03-18 01:57:27.972 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:27.972 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:57:28.122 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:28.122 -07 000000606 INF: FPGA: Recv ZSGSRD 29265
17-03-18 01:57:28.132 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:28.132 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:28.132 -07 000000438 INF: FPGA: Recv ZSGSRD 29266
17-03-18 01:57:28.142 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:28.142 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:28.142 -07 000000438 INF: FPGA: Recv ZSGSRD 29269
17-03-18 01:57:28.152 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:28.152 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:28.152 -07 000000444 INF: FPGA: Recv ZSGSRD 29260
17-03-18 01:57:28.162 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:28.162 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:28.162 -07 000000561 INF: FPGA: Recv ZSGSRD 29264
17-03-18 01:57:28.172 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:28.172 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:28.172 -07 000000585 INF: FPGA: Recv ZSGSRD 29271
17-03-18 01:57:28.182 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:28.182 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:28.182 -07 000000467 INF: FPGA: Recv ZSGSRD 29262
17-03-18 01:57:28.192 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:28.192 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:28.192 -07 000000629 INF: FPGA: Recv ZSGSRD 29261
17-03-18 01:57:28.202 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:28.202 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:28.202 -07 000000561 INF: FPGA: Recv ZSGSRD 29264
17-03-18 01:57:28.212 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:28.212 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:28.212 -07 000000629 INF: FPGA: Recv ZSGSRD 29266
17-03-18 01:57:28.222 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:28.222 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:57:28.222 -07 000000438 INF: FPGA: Recv ZPIEZORD 24826
17-03-18 01:57:28.232 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:28.232 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.277 V. Piezo Error = -9.7 V.
17-03-18 01:57:28.232 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29265 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29264 (-127.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29260 (-127.5 uncal um), Max = 29271 (-127.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:57:28.232 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29265, posNoise = 6, negNoise = 5
17-03-18 01:57:28.232 -07 000000610 INF: Z Motor: After move to -0.128322, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:57:28.232 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:57:28.232 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:57:28.232 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:57:28.232 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:57:28.232 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:57:28.232 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:57:28.232 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:57:28.232 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:57:28.232 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:57:28.232 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:57:28.232 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:57:28.232 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:57:28.232 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:57:28.242 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:57:28.242 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:57:28.242 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:57:28.242 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:57:28.252 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:57:28.252 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 01:57:28.252 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 01:57:28.252 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 01:57:28.252 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28209 150\n [Camera]
17-03-18 01:57:28.452 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:57:28.841 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:57:28.841 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:57:28.841 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:57:28.841 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:57:28.841 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:57:28.851 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:57:28.851 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:57:28.851 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:57:28.851 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:57:28.851 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:57:29.041 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28209 777
17-03-18 01:57:29.181 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:57:29.241 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:57:29.241 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:57:29.241 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:29.251 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:57:29.251 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 01:57:29.251 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 01:57:29.251 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 01:57:29.251 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:29.251 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:57:29.261 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 01:57:29.371 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:57:29.371 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:57:29.371 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:57:29.491 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:57:29.491 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:57:29.491 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:57:29.501 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:57:29.501 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:57:29.501 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:57:29.501 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:57:29.561 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 01:57:29.571 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:57:29.571 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28209 150' command took 2 ms to send, 1310 ms to get response, and 1315 ms overall
17-03-18 01:57:29.571 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:57:29.571 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128327920339769. ------
17-03-18 01:57:29.571 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:57:29.571 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13466 mm
17-03-18 01:57:29.571 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:57:29.581 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 01:57:29.581 -07 000000608 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 01:57:29.581 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:57:29.581 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 01:57:29.581 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:57:29.581 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 29417, sync = True, waitForSettling = False)
17-03-18 01:57:29.581 -07 000000606 INF: Z Motor: Moving to -0.134662 mm, started at -0.128328 mm, distance = -6.33 um
17-03-18 01:57:29.581 -07 000000585 INF: FPGA: Recv YRDPOS 149865
17-03-18 01:57:29.591 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:29.591 -07 000000608 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:57:29.591 -07 000000608 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:57:29.591 -07 000000608 INF: Y Motor: Moving 1354 steps-33
17-03-18 01:57:29.591 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:57:29.601 -07 000000606 INF: FPGA: Xmit ZDACW 29417\n [Z Motor]
17-03-18 01:57:29.601 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 01:57:29.611 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:57:29.611 -07 000000606 INF: FPGA: 'ZDACW 29417' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 01:57:29.621 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:57:29.621 -07 000000585 INF: FPGA: Recv ZDACR 29417
17-03-18 01:57:29.631 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 01:57:29.631 -07 000000606 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 01:57:29.791 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:57:29.791 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 4 ms to send, 196 ms to get response, and 215 ms overall
17-03-18 01:57:29.891 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 01:57:29.891 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:57:29.891 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:29.891 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 01:57:29.891 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:57:29.891 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:29.901 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:57:29.901 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:57:29.901 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms.
17-03-18 01:57:29.911 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 01:57:29.981 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 01:57:29.981 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 01:57:30.021 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:57:30.021 -07 000000606 INF: FPGA: Recv YRDPOS 151569
17-03-18 01:57:30.031 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:57:30.031 -07 000000608 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:57:30.031 -07 000000608 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 01:57:30.031 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.846 mm, average velocity = 2.148 mm/sec
17-03-18 01:57:30.980 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:57:30.980 -07 000000629 INF: FPGA: Recv YRDPOS 151569
17-03-18 01:57:30.990 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:57:30.990 -07 000000608 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:57:31.010 -07 000000608 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:57:31.010 -07 000000608 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:57:31.010 -07 000000608 INF: Y Motor: Moved to 74.0083 after 1430 ms (table move)
17-03-18 01:57:31.010 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134662 mm (DAC = 29417)
17-03-18 01:57:31.010 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:31.010 -07 000000608 INF: FPGA: Recv ZSGSRD 30256
17-03-18 01:57:31.020 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 01:57:31.020 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:31.020 -07 000000455 INF: FPGA: Recv ZSGSRD 30249
17-03-18 01:57:31.030 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:31.030 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:31.030 -07 000000455 INF: FPGA: Recv ZSGSRD 30249
17-03-18 01:57:31.040 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:31.040 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:31.040 -07 000000455 INF: FPGA: Recv ZSGSRD 30253
17-03-18 01:57:31.050 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:31.050 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:31.050 -07 000000467 INF: FPGA: Recv ZSGSRD 30257
17-03-18 01:57:31.060 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:31.060 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:31.060 -07 000000608 INF: FPGA: Recv ZSGSRD 30250
17-03-18 01:57:31.070 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:31.070 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:31.070 -07 000000629 INF: FPGA: Recv ZSGSRD 30252
17-03-18 01:57:31.080 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:31.080 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:31.080 -07 000000611 INF: FPGA: Recv ZSGSRD 30249
17-03-18 01:57:31.090 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:31.090 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:31.090 -07 000000569 INF: FPGA: Recv ZSGSRD 30250
17-03-18 01:57:31.100 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:31.100 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:31.100 -07 000000569 INF: FPGA: Recv ZSGSRD 30247
17-03-18 01:57:31.110 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:31.110 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:57:31.110 -07 000000561 INF: FPGA: Recv ZPIEZORD 26163
17-03-18 01:57:31.120 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:31.120 -07 000000444 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.489 V. Piezo Error = -9.0 V.
17-03-18 01:57:31.120 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30251 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30250 (-133.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30247 (-133.8 uncal um), Max = 30257 (-133.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 01:57:31.120 -07 000000444 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30251, posNoise = 6, negNoise = 4
17-03-18 01:57:31.120 -07 000000444 INF: Z Motor: After move to -0.134662, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:57:31.120 -07 000000444 INF: Z Motor: Settle wait time = 1432 ms, measure time = 107 ms (allowed 150 ms), total time = 1539 ms
17-03-18 01:57:31.120 -07 000000444 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 01:57:31.170 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-18 01:57:31.170 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:57:31.170 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:57:31.170 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:57:31.170 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:57:31.170 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:57:31.170 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:57:31.170 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:57:31.170 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:57:31.170 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:57:31.180 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:57:31.180 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:57:31.190 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 14 ms.
17-03-18 01:57:31.190 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:57:31.190 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:57:31.240 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:57:31.540 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:57:31.540 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:57:31.540 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:57:31.540 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 01:57:31.580 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:57:31.580 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 01:57:31.580 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 01:57:31.600 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:57:31.669 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 01:57:31.669 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:31.669 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:57:31.669 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 01:57:31.669 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:57:31.679 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:57:31.679 -07 000000561 INF: Autofocus start
17-03-18 01:57:31.679 -07 000000561 INF: MeasureProfile start
17-03-18 01:57:31.679 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:57:31.689 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:57:31.689 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:57:31.689 -07 000000561 INF: MeasureProfile done
17-03-18 01:57:31.689 -07 000000561 INF: X=16  Z correction [um]=0.0530179
17-03-18 01:57:31.689 -07 000000561 INF: Autofocus finished
17-03-18 01:57:31.889 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:57:31.889 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:57:31.889 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.134662193511546. ----------
17-03-18 01:57:31.889 -07 000000610 INF: Cycle	93	Tile	18	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:57:31.899 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27941, sync = True, waitForSettling = True)
17-03-18 01:57:31.899 -07 000000610 INF: Z Motor: Moving to -0.127906 mm, started at -0.134662 mm, distance = 6.76 um
17-03-18 01:57:31.899 -07 000000610 INF: FPGA: Xmit ZDACW 27941\n [Z Motor]
17-03-18 01:57:31.899 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 01:57:31.909 -07 000000610 INF: FPGA: 'ZDACW 27941' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:57:31.909 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:57:31.909 -07 000000561 INF: FPGA: Recv ZDACR 27941
17-03-18 01:57:31.919 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:31.919 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:57:31.989 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.000345,
17-03-18 01:57:32.069 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:32.069 -07 000000561 INF: FPGA: Recv ZSGSRD 29207
17-03-18 01:57:32.079 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:57:32.079 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:32.079 -07 000000455 INF: FPGA: Recv ZSGSRD 29197
17-03-18 01:57:32.089 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:32.089 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:32.089 -07 000000438 INF: FPGA: Recv ZSGSRD 29203
17-03-18 01:57:32.099 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:32.099 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:32.099 -07 000000455 INF: FPGA: Recv ZSGSRD 29199
17-03-18 01:57:32.109 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:32.109 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:32.109 -07 000000629 INF: FPGA: Recv ZSGSRD 29196
17-03-18 01:57:32.119 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:32.119 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:32.119 -07 000000444 INF: FPGA: Recv ZSGSRD 29202
17-03-18 01:57:32.129 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:32.129 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:32.129 -07 000000438 INF: FPGA: Recv ZSGSRD 29194
17-03-18 01:57:32.139 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:32.139 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:32.139 -07 000000444 INF: FPGA: Recv ZSGSRD 29206
17-03-18 01:57:32.149 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:32.149 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:32.149 -07 000000455 INF: FPGA: Recv ZSGSRD 29200
17-03-18 01:57:32.159 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:32.159 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:32.159 -07 000000467 INF: FPGA: Recv ZSGSRD 29202
17-03-18 01:57:32.169 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:32.169 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:57:32.169 -07 000000444 INF: FPGA: Recv ZPIEZORD 24791
17-03-18 01:57:32.179 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:32.179 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.264 V. Piezo Error = -9.7 V.
17-03-18 01:57:32.179 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29201 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29201 (-127.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29194 (-127.1 uncal um), Max = 29207 (-127.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:57:32.179 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29201, posNoise = 6, negNoise = 7
17-03-18 01:57:32.179 -07 000000610 INF: Z Motor: After move to -0.127906, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:57:32.179 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:57:32.179 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:57:32.179 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:57:32.179 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:57:32.179 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:57:32.179 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:57:32.179 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:57:32.179 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:57:32.179 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:57:32.179 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 01:57:32.179 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:57:32.179 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 01:57:32.179 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:57:32.189 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:57:32.189 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:57:32.189 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:57:32.189 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:57:32.189 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 01:57:32.189 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 01:57:32.199 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:57:32.199 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 01:57:32.199 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28118 150\n [Camera]
17-03-18 01:57:32.399 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:57:32.789 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:57:32.789 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:57:32.789 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:57:32.789 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:57:32.789 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:57:32.789 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:57:32.789 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:57:32.789 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:57:32.789 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:57:32.789 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:57:32.989 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28118 779
17-03-18 01:57:33.129 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:57:33.188 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 01:57:33.188 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 01:57:33.188 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:33.188 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 01:57:33.188 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 01:57:33.188 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:33.188 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:57:33.188 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:57:33.198 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:57:33.198 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 01:57:33.318 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:57:33.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:57:33.318 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:57:33.428 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:57:33.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:57:33.428 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:57:33.438 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:57:33.438 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:57:33.438 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:57:33.438 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:57:33.508 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:57:33.508 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:57:33.508 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28118 150' command took 2 ms to send, 1307 ms to get response, and 1314 ms overall
17-03-18 01:57:33.518 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 01:57:33.518 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.127916770762697. ------
17-03-18 01:57:33.518 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:57:33.518 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13386 mm
17-03-18 01:57:33.518 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:57:33.518 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 01:57:33.518 -07 000000444 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 01:57:33.518 -07 000000592 INF: Z Motor: Entering MoveAbsStepped (DAC = 29242, sync = True, waitForSettling = False)
17-03-18 01:57:33.518 -07 000000592 INF: Z Motor: Moving to -0.133861 mm, started at -0.127917 mm, distance = -5.94 um
17-03-18 01:57:33.518 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:57:33.528 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:57:33.528 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:57:33.528 -07 000000585 INF: FPGA: Recv YRDPOS 151570
17-03-18 01:57:33.538 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 01:57:33.538 -07 000000444 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:57:33.538 -07 000000592 INF: FPGA: Xmit ZDACW 29242\n [Z Motor]
17-03-18 01:57:33.538 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:57:33.538 -07 000000444 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:57:33.538 -07 000000444 INF: Y Motor: Moving 1350 steps-29
17-03-18 01:57:33.548 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:57:33.548 -07 000000592 INF: FPGA: 'ZDACW 29242' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:57:33.558 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:57:33.568 -07 000000592 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:57:33.568 -07 000000611 INF: FPGA: Recv ZDACR 29242
17-03-18 01:57:33.578 -07 000000592 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:57:33.578 -07 000000592 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 01:57:33.748 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:57:33.748 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:57:33.828 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 01:57:33.828 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 01:57:33.828 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:33.828 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:57:33.828 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 01:57:33.828 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 01:57:33.828 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:33.838 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:57:33.838 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-18 01:57:33.838 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 01:57:33.928 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-18 01:57:33.928 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 01:57:33.958 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:57:33.968 -07 000000438 INF: FPGA: Recv YRDPOS 153256
17-03-18 01:57:33.968 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:57:33.968 -07 000000444 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:57:33.968 -07 000000444 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-18 01:57:33.968 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.159 mm/sec
17-03-18 01:57:34.917 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:57:34.917 -07 000000502 INF: FPGA: Recv YRDPOS 153256
17-03-18 01:57:34.927 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:34.927 -07 000000444 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:57:34.937 -07 000000444 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:57:34.937 -07 000000444 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:57:34.937 -07 000000444 INF: Y Motor: Moved to 74.8320 after 1423 ms (table move)
17-03-18 01:57:34.947 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133861 mm (DAC = 29242)
17-03-18 01:57:34.947 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:34.947 -07 000000467 INF: FPGA: Recv ZSGSRD 30126
17-03-18 01:57:34.957 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:57:34.957 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:34.957 -07 000000462 INF: FPGA: Recv ZSGSRD 30128
17-03-18 01:57:34.967 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:34.967 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:34.967 -07 000000561 INF: FPGA: Recv ZSGSRD 30119
17-03-18 01:57:34.977 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:34.977 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:34.977 -07 000000608 INF: FPGA: Recv ZSGSRD 30124
17-03-18 01:57:34.987 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:34.987 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:34.987 -07 000000467 INF: FPGA: Recv ZSGSRD 30128
17-03-18 01:57:34.997 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:34.997 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:34.997 -07 000000592 INF: FPGA: Recv ZSGSRD 30128
17-03-18 01:57:35.007 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:35.007 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:35.007 -07 000000455 INF: FPGA: Recv ZSGSRD 30130
17-03-18 01:57:35.017 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:35.017 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:35.017 -07 000000606 INF: FPGA: Recv ZSGSRD 30125
17-03-18 01:57:35.027 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:35.027 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:35.027 -07 000000467 INF: FPGA: Recv ZSGSRD 30124
17-03-18 01:57:35.037 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:35.037 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:35.037 -07 000000502 INF: FPGA: Recv ZSGSRD 30123
17-03-18 01:57:35.047 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:35.047 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:57:35.047 -07 000000611 INF: FPGA: Recv ZPIEZORD 25994
17-03-18 01:57:35.057 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:35.057 -07 000000461 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.462 V. Piezo Error = -9.1 V.
17-03-18 01:57:35.057 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.9 um, Read 10 ADC samples: Avg = 30126 (-133.1 uncal um), Error = 0.8 uncal um, Median = 30126 (-133.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30119 (-133.0 uncal um), Max = 30130 (-133.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:57:35.057 -07 000000461 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30126, posNoise = 4, negNoise = 7
17-03-18 01:57:35.057 -07 000000461 INF: Z Motor: After move to -0.133861, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:57:35.057 -07 000000461 INF: Z Motor: Settle wait time = 1426 ms, measure time = 108 ms (allowed 150 ms), total time = 1534 ms
17-03-18 01:57:35.057 -07 000000461 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:57:35.107 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-18 01:57:35.107 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:57:35.107 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:57:35.107 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:57:35.107 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:57:35.107 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:57:35.107 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:57:35.107 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:57:35.117 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:57:35.117 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:57:35.117 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 01:57:35.117 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:57:35.127 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:57:35.127 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:57:35.137 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:57:35.177 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 01:57:35.477 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 01:57:35.477 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 01:57:35.487 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:57:35.487 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 01:57:35.517 -07 000000438 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:57:35.517 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 01:57:35.517 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 01:57:35.607 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 01:57:35.607 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:35.617 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:57:35.617 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:57:35.717 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:57:35.717 -07 000000592 INF: Autofocus start
17-03-18 01:57:35.717 -07 000000592 INF: MeasureProfile start
17-03-18 01:57:35.717 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:57:35.727 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:57:35.727 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:57:35.727 -07 000000592 INF: MeasureProfile done
17-03-18 01:57:35.727 -07 000000592 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 01:57:35.727 -07 000000592 INF: Autofocus finished
17-03-18 01:57:35.927 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:57:35.927 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:57:35.927 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.133859166993826. ----------
17-03-18 01:57:35.927 -07 000000610 INF: Cycle	93	Tile	19	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:57:35.937 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27720, sync = True, waitForSettling = True)
17-03-18 01:57:35.937 -07 000000610 INF: Z Motor: Moving to -0.126894 mm, started at -0.133859 mm, distance = 6.97 um
17-03-18 01:57:35.937 -07 000000610 INF: FPGA: Xmit ZDACW 27720\n [Z Motor]
17-03-18 01:57:35.937 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 01:57:35.947 -07 000000610 INF: FPGA: 'ZDACW 27720' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:35.947 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:57:35.947 -07 000000455 INF: FPGA: Recv ZDACR 27720
17-03-18 01:57:35.957 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:35.957 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:57:36.107 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:36.107 -07 000000629 INF: FPGA: Recv ZSGSRD 29046
17-03-18 01:57:36.116 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:57:36.116 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:36.116 -07 000000629 INF: FPGA: Recv ZSGSRD 29044
17-03-18 01:57:36.126 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:36.126 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:36.126 -07 000000629 INF: FPGA: Recv ZSGSRD 29042
17-03-18 01:57:36.136 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:36.136 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:36.136 -07 000000626 INF: FPGA: Recv ZSGSRD 29044
17-03-18 01:57:36.146 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:36.146 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:36.146 -07 000000608 INF: FPGA: Recv ZSGSRD 29046
17-03-18 01:57:36.156 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:36.156 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:36.156 -07 000000629 INF: FPGA: Recv ZSGSRD 29038
17-03-18 01:57:36.166 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:36.166 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:36.166 -07 000000629 INF: FPGA: Recv ZSGSRD 29038
17-03-18 01:57:36.176 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:36.176 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:36.176 -07 000000626 INF: FPGA: Recv ZSGSRD 29048
17-03-18 01:57:36.186 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:36.186 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:36.186 -07 000000608 INF: FPGA: Recv ZSGSRD 29040
17-03-18 01:57:36.196 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:36.196 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:57:36.196 -07 000000626 INF: FPGA: Recv ZSGSRD 29045
17-03-18 01:57:36.206 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:36.206 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:57:36.206 -07 000000608 INF: FPGA: Recv ZPIEZORD 24606
17-03-18 01:57:36.216 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:36.216 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.230 V. Piezo Error = -9.7 V.
17-03-18 01:57:36.216 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.9 um, Read 10 ADC samples: Avg = 29043 (-126.1 uncal um), Error = 0.8 uncal um, Median = 29044 (-126.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29038 (-126.1 uncal um), Max = 29048 (-126.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:57:36.216 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29043, posNoise = 5, negNoise = 5
17-03-18 01:57:36.216 -07 000000610 INF: Z Motor: After move to -0.126894, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:57:36.216 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:57:36.216 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:57:36.216 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:57:36.216 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:57:36.216 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:57:36.216 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:57:36.216 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:57:36.216 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:57:36.216 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:57:36.216 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 01:57:36.216 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:57:36.216 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 01:57:36.216 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:57:36.226 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:57:36.226 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:57:36.226 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 01:57:36.226 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:57:36.236 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 01:57:36.236 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:57:36.236 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 01:57:36.236 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 01:57:36.236 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 27896 150\n [Camera]
17-03-18 01:57:36.436 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:57:36.596 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:57:36.596 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 92. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:57:36.826 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:57:36.826 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:57:36.826 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:57:36.826 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:57:36.826 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:57:36.826 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:57:36.826 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:57:36.826 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:57:36.826 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:57:36.826 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:57:37.016 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27896 777
17-03-18 01:57:37.166 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:57:37.226 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 01:57:37.226 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 01:57:37.226 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 01:57:37.226 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 01:57:37.226 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:37.226 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:37.236 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:57:37.236 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:57:37.236 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 01:57:37.246 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 01:57:37.366 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:57:37.366 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:57:37.366 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:57:37.366 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:57:37.366 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:57:37.366 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:57:37.376 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:57:37.376 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:57:37.376 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.007176,
17-03-18 01:57:37.376 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:57:37.376 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:57:37.546 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 01:57:37.546 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:57:37.546 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 27896 150' command took 2 ms to send, 1308 ms to get response, and 1314 ms overall
17-03-18 01:57:37.755 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 01:57:37.755 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 01:57:37.755 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:37.765 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:57:37.765 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 01:57:37.765 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:57:37.765 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:57:37.765 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 01:57:37.775 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:57:37.775 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 01:57:37.775 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 01:57:37.815 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 01:57:37.815 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 01:57:37.855 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 01:57:37.875 -07 000000610 INF: Enabling Skipping AutoFocus in the next 4 cycles.
17-03-18 01:57:37.875 -07 000000610 INF: Imaging Cycle 93: ScanTilesCommand Cycle 93 time end. Duration was 164442 ms.
17-03-18 01:57:37.875 -07 000000610 INF: =================== Cycle #93 ===================
17-03-18 01:57:37.875 -07 000000610 INF: ===================  ===================
17-03-18 01:57:37.875 -07 000000462 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 01:57:37.875 -07 000000467 INF: FPGA: Recv EXLED1ADCR 25
17-03-18 01:57:37.885 -07 000000462 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:57:37.885 -07 000000462 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW
17-03-18 01:57:37.885 -07 000000462 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 93, FrontChillerTemperature: 4.007176, FrontChillerHeatSinkTemperature: 0.250547, AmbientTemperature: 18.83269, FlowCellCompartmentTemperature: 21.99981, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.58962, GreenLEDSensorTemperature: 26.633, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864
17-03-18 01:57:37.955 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.