17-03-18 01:57:38.005 -07 000000610 INF: =================== Cycle #94 ===================
17-03-18 01:57:38.005 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 01:57:38.005 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-18 01:57:38.005 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:57:38.015 -07 000000592 INF: FPGA: Recv YRDPOS 153256
17-03-18 01:57:38.015 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 01:57:38.015 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:57:38.015 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 01:57:38.015 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 01:57:38.015 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 01:57:38.135 -07 000000462 INF: FPGA: Recv YMVTO 154378 878
17-03-18 01:57:38.135 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 110 ms to get response, and 118 ms overall
17-03-18 01:57:38.135 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 01:57:38.135 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 878 steps (0.549 mm). Slippage = 0.001 mm (0.00%).
17-03-18 01:57:38.135 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 118 ms, distance = 0.549 mm, average velocity = 4.649 mm/sec
17-03-18 01:57:41.133 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:57:41.133 -07 000000629 INF: FPGA: Recv YRDPOS 154387
17-03-18 01:57:41.143 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:41.143 -07 000000610 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:57:41.163 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.003697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:57:41.163 -07 000000610 INF: Y Motor: Position error after settling = 8 encoder counts (0.004 mm), Delta during settling = 9 counts (0.004 mm)
17-03-18 01:57:41.163 -07 000000610 INF: Y Motor: Moved to 75.3843 after 3156 ms
17-03-18 01:57:41.173 -07 000000610 INF: =================== Cycle #94, Flow Cell Temp 60° ===================
17-03-18 01:57:41.173 -07 000000610 INF: =================== Cycle #94, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 01:57:41.173 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 01:57:41.173 -07 000000438 INF: FPGA: Recv TEC2TEMP 
17-03-18 01:57:41.183 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:41.183 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 01:57:41.183 -07 000000444 INF: FPGA: Recv TEC2EN 
17-03-18 01:57:41.193 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:57:41.193 -07 000000610 INF: =================== Cycle #94, Flow Cell Temp 60° ===================
17-03-18 01:57:41.193 -07 000000610 INF: =================== Cycle #94 ===================
17-03-18 01:57:41.193 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:57:41.193 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:57:41.223 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 01:57:41.223 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 01:57:41.223 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 01:57:41.523 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:57:41.543 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 01:57:41.543 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 01:57:41.593 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:57:41.593 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:57:41.593 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1427, R2=1483, Total=2910. Warn if over 250 bubbles per interval.
17-03-18 01:57:41.613 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:57:41.613 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:57:41.713 -07 000000610 INF: =================== Cycle #94, Pumping Reagent PR2 (3) ===================
17-03-18 01:57:41.713 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 01:57:41.713 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:57:41.743 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 01:57:41.743 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 01:57:41.743 -07 000000610 INF: =================== Cycle #94, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:57:41.873 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 01:57:41.913 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:57:42.732 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 3.986717,
17-03-18 01:57:45.041 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:57:45.070 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:57:45.490 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:57:45.520 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:57:45.940 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:57:45.970 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:57:45.970 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 01:57:45.970 -07 000000610 INF: =================== Cycle #94, Pumping Reagent PR2 (3) ===================
17-03-18 01:57:46.100 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:57:46.130 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:57:46.130 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:57:46.260 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:57:46.290 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:57:46.290 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:57:46.290 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:57:46.420 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:57:46.460 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:57:46.589 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 5
17-03-18 01:57:46.589 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=5, R2=3, Total=8. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1432, R2=1486, Total=2918. Warn if over 250 bubbles per interval.
17-03-18 01:57:46.889 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:57:46.919 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:57:46.919 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:57:46.919 -07 000000610 INF: =================== Cycle #94 ===================
17-03-18 01:57:48.088 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 3.993549,
17-03-18 01:57:48.128 -07 000000610 INF: AsyncDelayTimer waited 1208ms
17-03-18 01:57:48.128 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 01:57:48.128 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:57:48.148 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:57:48.148 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 01:57:48.148 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 01:57:48.278 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:57:48.298 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 01:57:48.298 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 01:57:48.348 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:57:48.368 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 01:57:48.368 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:57:48.468 -07 000000610 INF: =================== Cycle #94, Pumping Reagent CMS (4) ===================
17-03-18 01:57:48.468 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 01:57:48.468 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:57:48.498 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:57:48.498 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:57:48.498 -07 000000610 INF: =================== Cycle #94, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 01:57:48.628 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 01:57:48.668 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:57:50.107 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:57:50.137 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:57:50.557 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:57:50.587 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:57:50.587 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 01:57:50.587 -07 000000610 INF: =================== Cycle #94, Pumping Reagent CMS (4) ===================
17-03-18 01:57:50.717 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:57:50.747 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:57:50.747 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:57:50.877 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:57:50.907 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:57:50.907 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:57:50.907 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:57:51.036 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:57:51.066 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:57:51.496 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:57:51.526 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:57:51.526 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:57:51.526 -07 000000610 INF: =================== Cycle #94 ===================
17-03-18 01:57:51.586 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 5 R1 2
17-03-18 01:57:51.586 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=2, R2=5, Total=7. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1434, R2=1491, Total=2925. Warn if over 250 bubbles per interval.
17-03-18 01:57:52.745 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 01:57:52.745 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:57:52.745 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:57:52.765 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 01:57:52.765 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 01:57:52.765 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 01:57:52.915 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:57:52.935 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 01:57:52.935 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 01:57:52.985 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:57:53.005 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:57:53.005 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:57:53.105 -07 000000610 INF: =================== Cycle #94, Pumping Reagent PR2 (3) ===================
17-03-18 01:57:53.105 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 01:57:53.105 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:57:53.135 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:57:53.135 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:57:53.135 -07 000000610 INF: =================== Cycle #94, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:57:53.265 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 01:57:53.305 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:57:53.445 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 3.952638,
17-03-18 01:57:54.174 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:57:54.204 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:57:54.204 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 01:57:54.204 -07 000000610 INF: =================== Cycle #94, Pumping Reagent PR2 (3) ===================
17-03-18 01:57:54.334 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:57:54.364 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:57:54.364 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:57:54.494 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:57:54.524 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:57:54.524 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:57:54.524 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:57:54.654 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:57:54.684 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:57:55.114 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:57:55.144 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:57:55.144 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:57:55.144 -07 000000610 INF: =================== Cycle #94 ===================
17-03-18 01:57:55.144 -07 000000502 INF: WaitCommand(10000) start
17-03-18 01:57:55.144 -07 000000608 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:57:55.144 -07 000000608 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 01:57:56.363 -07 000000608 INF: AsyncDelayTimer waited 1216ms
17-03-18 01:57:56.363 -07 000000608 INF: LanePump: Xmit /1?\r
17-03-18 01:57:56.393 -07 000000608 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:57:56.393 -07 000000608 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:57:56.523 -07 000000608 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 01:57:56.563 -07 000000608 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:57:56.583 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:57:56.583 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1434, R2=1491, Total=2925. Warn if over 250 bubbles per interval.
17-03-18 01:57:58.092 -07 000000608 INF: LanePump: Xmit /1Q\r
17-03-18 01:57:58.122 -07 000000608 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:57:58.541 -07 000000608 INF: LanePump: Xmit /1Q\r
17-03-18 01:57:58.571 -07 000000608 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:57:58.571 -07 000000608 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 01:57:58.571 -07 000000608 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:57:58.571 -07 000000608 INF: ===================  ===================
17-03-18 01:57:58.801 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 3.974486,
17-03-18 01:58:01.579 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:58:01.579 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1434, R2=1491, Total=2925. Warn if over 250 bubbles per interval.
17-03-18 01:58:04.158 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 4.000345,
17-03-18 01:58:05.147 -07 000000502 INF: WaitCommand(10000) end
17-03-18 01:58:05.147 -07 000000610 INF: =================== Cycle #94, Pumping Reagent PR2 (3) ===================
17-03-18 01:58:05.147 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 01:58:05.147 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:58:05.187 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 01:58:05.187 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 01:58:05.187 -07 000000610 INF: =================== Cycle #94, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:58:05.317 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 01:58:05.357 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:58:06.576 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:58:06.576 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1434, R2=1491, Total=2925. Warn if over 250 bubbles per interval.
17-03-18 01:58:09.514 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 4.003063,
17-03-18 01:58:11.483 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:58:11.513 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:58:11.573 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:58:11.573 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1434, R2=1491, Total=2925. Warn if over 250 bubbles per interval.
17-03-18 01:58:11.932 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:58:11.962 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:58:12.382 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:58:12.412 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:58:12.832 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:58:12.862 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:58:13.282 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:58:13.312 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:58:13.312 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 01:58:13.312 -07 000000610 INF: =================== Cycle #94, Pumping Reagent PR2 (3) ===================
17-03-18 01:58:13.441 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:58:13.471 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 01:58:13.471 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 01:58:13.601 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:58:13.631 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 01:58:13.631 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 01:58:13.631 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:58:13.761 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:58:13.791 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:58:14.221 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:58:14.251 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:58:14.251 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:58:14.251 -07 000000610 INF: =================== Cycle #94 ===================
17-03-18 01:58:14.871 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 4.026244,
17-03-18 01:58:15.470 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:58:15.470 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 01:58:15.470 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:58:15.490 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:58:15.490 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 01:58:15.490 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 01:58:15.700 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:58:15.720 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 01:58:15.720 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 01:58:15.770 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:58:15.790 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 01:58:15.790 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:58:15.890 -07 000000610 INF: =================== Cycle #94, Pumping Reagent IMT (1) ===================
17-03-18 01:58:15.890 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 01:58:15.890 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:58:15.920 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 01:58:15.920 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 01:58:15.920 -07 000000610 INF: =================== Cycle #94, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 01:58:16.050 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 01:58:16.090 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:58:16.569 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 3
17-03-18 01:58:16.569 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=3, R2=1, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1437, R2=1492, Total=2929. Warn if over 250 bubbles per interval.
17-03-18 01:58:17.529 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:58:17.559 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:58:17.978 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:58:18.008 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:58:18.008 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 01:58:18.008 -07 000000610 INF: =================== Cycle #94, Pumping Reagent IMT (1) ===================
17-03-18 01:58:18.138 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:58:18.168 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 01:58:18.168 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 01:58:18.298 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:58:18.328 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 01:58:18.328 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 01:58:18.328 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:58:18.458 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:58:18.488 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:58:18.918 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:58:18.948 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:58:18.948 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:58:18.948 -07 000000610 INF: =================== Cycle #94 ===================
17-03-18 01:58:20.167 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 01:58:20.167 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:58:20.167 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:58:20.187 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 01:58:20.187 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 01:58:20.187 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 01:58:20.227 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 3.994908,
17-03-18 01:58:20.417 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:58:20.437 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 01:58:20.437 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 01:58:20.487 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:58:20.507 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:58:20.507 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:58:20.607 -07 000000610 INF: =================== Cycle #94, Pumping Reagent PR2 (3) ===================
17-03-18 01:58:20.607 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 01:58:20.607 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:58:20.647 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 01:58:20.647 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 01:58:20.647 -07 000000610 INF: =================== Cycle #94, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:58:20.777 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 01:58:20.817 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:58:21.566 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 01:58:21.566 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1437, R2=1493, Total=2930. Warn if over 250 bubbles per interval.
17-03-18 01:58:21.686 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:58:21.716 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:58:21.716 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 01:58:21.716 -07 000000610 INF: =================== Cycle #94, Pumping Reagent PR2 (3) ===================
17-03-18 01:58:21.846 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:58:21.876 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 01:58:21.876 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 01:58:22.006 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:58:22.036 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 01:58:22.036 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 01:58:22.036 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:58:22.166 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:58:22.196 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:58:22.625 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:58:22.655 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:58:22.655 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:58:22.655 -07 000000610 INF: =================== Cycle #94 ===================
17-03-18 01:58:22.655 -07 000000610 INF: =================== Cycle #94, Flow Cell Temp 65° ===================
17-03-18 01:58:22.655 -07 000000610 INF: =================== Cycle #94, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 01:58:22.655 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 01:58:22.655 -07 000000629 INF: FPGA: Recv TEC2TEMP 
17-03-18 01:58:22.665 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:58:22.665 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 01:58:22.665 -07 000000629 INF: FPGA: Recv TEC2EN 
17-03-18 01:58:22.675 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:58:22.675 -07 000000610 INF: =================== Cycle #94, Flow Cell Temp 65° ===================
17-03-18 01:58:22.675 -07 000000610 INF: =================== Cycle #94 ===================
17-03-18 01:58:22.675 -07 000000610 INF: WaitCommand(30000) start
17-03-18 01:58:25.583 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 4.007176,
17-03-18 01:58:26.563 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:58:26.563 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1437, R2=1493, Total=2930. Warn if over 250 bubbles per interval.
17-03-18 01:58:30.940 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 4.011254,
17-03-18 01:58:31.559 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:58:31.559 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1437, R2=1493, Total=2930. Warn if over 250 bubbles per interval.
17-03-18 01:58:36.296 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 4.019446,
17-03-18 01:58:36.556 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:58:36.566 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1437, R2=1493, Total=2930. Warn if over 250 bubbles per interval.
17-03-18 01:58:41.553 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:58:41.553 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1437, R2=1493, Total=2930. Warn if over 250 bubbles per interval.
17-03-18 01:58:41.653 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 4.003063,
17-03-18 01:58:46.549 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:58:46.549 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1437, R2=1493, Total=2930. Warn if over 250 bubbles per interval.
17-03-18 01:58:47.009 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 3.993549,
17-03-18 01:58:51.547 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:58:51.547 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1437, R2=1493, Total=2930. Warn if over 250 bubbles per interval.
17-03-18 01:58:52.367 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 3.973092,
17-03-18 01:58:52.667 -07 000000610 INF: WaitCommand(30000) end
17-03-18 01:58:52.667 -07 000000610 INF: =================== Cycle #94, Pumping Reagent PR2 (3) ===================
17-03-18 01:58:52.667 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 01:58:52.787 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:58:52.817 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 01:58:52.817 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 01:58:52.817 -07 000000610 INF: =================== Cycle #94, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:58:52.947 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 01:58:52.987 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:58:53.527 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:58:53.557 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:58:53.557 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 01:58:53.557 -07 000000610 INF: =================== Cycle #94, Pumping Reagent PR2 (3) ===================
17-03-18 01:58:53.687 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:58:53.717 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 01:58:53.717 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 01:58:53.847 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:58:53.877 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 01:58:53.877 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 01:58:53.877 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:58:54.007 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:58:54.036 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:58:54.466 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:58:54.496 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:58:54.496 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:58:54.496 -07 000000610 INF: =================== Cycle #94 ===================
17-03-18 01:58:54.496 -07 000000629 INF: WaitCommand(30000) start
17-03-18 01:58:54.496 -07 000000569 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:58:54.496 -07 000000569 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 01:58:55.716 -07 000000569 INF: AsyncDelayTimer waited 1216ms
17-03-18 01:58:55.716 -07 000000569 INF: LanePump: Xmit /1?\r
17-03-18 01:58:55.746 -07 000000569 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 01:58:55.746 -07 000000569 INF: LanePump: Current Position of Pump is: 1920
17-03-18 01:58:55.876 -07 000000569 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 01:58:55.916 -07 000000569 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:58:56.546 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:58:56.546 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1437, R2=1493, Total=2930. Warn if over 250 bubbles per interval.
17-03-18 01:58:57.726 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 3.955391,
17-03-18 01:58:58.255 -07 000000569 INF: LanePump: Xmit /1Q\r
17-03-18 01:58:58.285 -07 000000569 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:58:58.705 -07 000000569 INF: LanePump: Xmit /1Q\r
17-03-18 01:58:58.735 -07 000000569 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:58:58.735 -07 000000569 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 01:58:58.735 -07 000000569 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:58:58.735 -07 000000569 INF: ===================  ===================
17-03-18 01:59:01.545 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:59:01.545 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1437, R2=1493, Total=2930. Warn if over 250 bubbles per interval.
17-03-18 01:59:03.084 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 3.979922,
17-03-18 01:59:06.543 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:59:06.543 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1437, R2=1493, Total=2930. Warn if over 250 bubbles per interval.
17-03-18 01:59:08.443 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 3.997626,
17-03-18 01:59:11.542 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:59:11.542 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1437, R2=1493, Total=2930. Warn if over 250 bubbles per interval.
17-03-18 01:59:13.802 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 4.007176,
17-03-18 01:59:16.541 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:59:16.541 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1437, R2=1493, Total=2930. Warn if over 250 bubbles per interval.
17-03-18 01:59:19.160 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 3.988112,
17-03-18 01:59:21.540 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:59:21.540 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1437, R2=1493, Total=2930. Warn if over 250 bubbles per interval.
17-03-18 01:59:24.499 -07 000000629 INF: WaitCommand(30000) end
17-03-18 01:59:24.499 -07 000000610 INF: =================== Cycle #94, Flow Cell Temp 22° ===================
17-03-18 01:59:24.499 -07 000000610 INF: =================== Cycle #94, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 01:59:24.499 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 01:59:24.499 -07 000000437 INF: FPGA: Recv TEC2TEMP 
17-03-18 01:59:24.509 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:59:24.519 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 3.974486,
17-03-18 01:59:24.529 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 01:59:24.529 -07 000000424 INF: FPGA: Recv TEC2EN 
17-03-18 01:59:24.539 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:59:24.539 -07 000000610 INF: =================== Cycle #94, Flow Cell Temp 22° ===================
17-03-18 01:59:24.539 -07 000000610 INF: =================== Cycle #94 ===================
17-03-18 01:59:24.539 -07 000000610 INF: =================== Cycle #94, Pumping Reagent PR2 (3) ===================
17-03-18 01:59:24.539 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 01:59:24.539 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:59:24.579 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 01:59:24.579 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 01:59:24.579 -07 000000610 INF: =================== Cycle #94, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:59:24.709 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 01:59:24.749 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:59:26.539 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:59:26.539 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1437, R2=1493, Total=2930. Warn if over 250 bubbles per interval.
17-03-18 01:59:27.878 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:59:27.908 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:59:28.328 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:59:28.358 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:59:28.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:59:28.808 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:59:28.808 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 01:59:28.808 -07 000000610 INF: =================== Cycle #94, Pumping Reagent PR2 (3) ===================
17-03-18 01:59:28.938 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:59:28.968 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:59:28.968 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:59:29.098 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:59:29.128 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:59:29.128 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:59:29.128 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:59:29.258 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:59:29.288 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:59:29.718 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:59:29.748 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:59:29.748 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:59:29.748 -07 000000610 INF: =================== Cycle #94 ===================
17-03-18 01:59:29.888 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 4.004458,
17-03-18 01:59:30.968 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 01:59:30.968 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 01:59:30.968 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:59:30.988 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:59:30.988 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 01:59:30.988 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 01:59:31.138 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:59:31.158 -07 000000610 INF: ReagentValve: Recv 00E2\r
17-03-18 01:59:31.158 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 226 steps, expected 204. Error = 22 steps (10.8%)
17-03-18 01:59:31.208 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:59:31.228 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 01:59:31.228 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:59:31.328 -07 000000610 INF: =================== Cycle #94, Pumping Reagent USM (2) ===================
17-03-18 01:59:31.328 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 01:59:31.328 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:59:31.358 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 01:59:31.358 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 01:59:31.358 -07 000000610 INF: =================== Cycle #94, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 01:59:31.488 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 01:59:31.527 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:59:31.537 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 01:59:31.537 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1439, R2=1495, Total=2934. Warn if over 250 bubbles per interval.
17-03-18 01:59:32.967 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:59:32.997 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:59:33.417 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:59:33.447 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:59:33.447 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 01:59:33.447 -07 000000610 INF: =================== Cycle #94, Pumping Reagent USM (2) ===================
17-03-18 01:59:33.577 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:59:33.607 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:59:33.607 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:59:33.737 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:59:33.767 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:59:33.767 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:59:33.767 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:59:33.897 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:59:33.927 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:59:34.357 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:59:34.387 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:59:34.387 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 01:59:34.387 -07 000000610 INF: =================== Cycle #94 ===================
17-03-18 01:59:35.247 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 4.008536,
17-03-18 01:59:35.607 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 01:59:35.607 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 01:59:35.607 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:59:35.627 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 01:59:35.627 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 01:59:35.627 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 01:59:35.776 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:59:35.796 -07 000000610 INF: ReagentValve: Recv 00E2\r
17-03-18 01:59:35.796 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 226 steps, expected 204. Error = 22 steps (10.8%)
17-03-18 01:59:35.846 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:59:35.866 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:59:35.866 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 01:59:35.966 -07 000000610 INF: =================== Cycle #94, Pumping Reagent PR2 (3) ===================
17-03-18 01:59:35.966 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 01:59:35.966 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:59:35.996 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 01:59:35.996 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 01:59:35.996 -07 000000610 INF: =================== Cycle #94, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 01:59:36.126 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 01:59:36.166 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:59:36.536 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 01:59:36.536 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1440, R2=1496, Total=2936. Warn if over 250 bubbles per interval.
17-03-18 01:59:37.036 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:59:37.066 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:59:37.066 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 01:59:37.066 -07 000000610 INF: =================== Cycle #94, Pumping Reagent PR2 (3) ===================
17-03-18 01:59:37.196 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:59:37.226 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:59:37.226 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:59:37.356 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 01:59:37.386 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:59:37.386 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:59:37.386 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 01:59:37.516 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 01:59:37.546 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:59:37.976 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 01:59:38.006 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:59:38.006 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 01:59:38.006 -07 000000610 INF: =================== Cycle #94 ===================
17-03-18 01:59:38.006 -07 000000437 INF: WaitCommand(10000) start
17-03-18 01:59:38.006 -07 000000462 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:59:38.006 -07 000000462 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 01:59:39.226 -07 000000462 INF: AsyncDelayTimer waited 1216ms
17-03-18 01:59:39.226 -07 000000462 INF: LanePump: Xmit /1?\r
17-03-18 01:59:39.256 -07 000000462 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 01:59:39.256 -07 000000462 INF: LanePump: Current Position of Pump is: 1110
17-03-18 01:59:39.386 -07 000000462 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 01:59:39.426 -07 000000462 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:59:40.605 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 4.02213,
17-03-18 01:59:40.955 -07 000000462 INF: LanePump: Xmit /1Q\r
17-03-18 01:59:41.445 -07 000000462 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 01:59:41.535 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 01:59:41.535 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 01:59:41.865 -07 000000462 INF: LanePump: Xmit /1Q\r
17-03-18 01:59:41.895 -07 000000462 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 01:59:41.895 -07 000000462 INF: LanePump: Waited 2469 ms for pump motion to complete
17-03-18 01:59:41.895 -07 000000462 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 01:59:41.895 -07 000000462 INF: ===================  ===================
17-03-18 01:59:46.534 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:59:46.534 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 01:59:46.754 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 3.979922,
17-03-18 01:59:48.014 -07 000000437 INF: WaitCommand(10000) end
17-03-18 01:59:48.014 -07 000000610 INF: =================== Cycle #94, Imaging ===================
17-03-18 01:59:48.014 -07 000000610 INF: Imaging Cycle 94: ScanTilesCommand Cycle 94 time start.
17-03-18 01:59:48.024 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 01:59:48.024 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:59:48.044 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 01:59:48.044 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 01:59:48.044 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 01:59:48.343 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 01:59:48.363 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 01:59:48.363 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 01:59:48.413 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 01:59:48.433 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 01:59:48.433 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:59:48.433 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:59:48.433 -07 000000629 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 01:59:48.433 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:59:48.433 -07 000000629 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 01:59:48.443 -07 000000569 INF: FPGA: Recv EXLED1ON 
17-03-18 01:59:48.443 -07 000000629 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 01:59:48.443 -07 000000629 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 01:59:48.443 -07 000000592 INF: FPGA: Recv EXLED1ADCR 23181
17-03-18 01:59:48.453 -07 000000629 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:48.453 -07 000000629 INF: RedLED: Using Red data: Photodiode ADC 23181 --> 7.4 mW (old method), or 205.4 mW (new method). Difference = 198.0 mW
17-03-18 01:59:48.453 -07 000000629 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 01:59:48.453 -07 000000592 INF: FPGA: Recv EXLED1OFF 
17-03-18 01:59:48.463 -07 000000629 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:48.463 -07 000000629 INF: RedLED: LED was on for 19 ms
17-03-18 01:59:48.463 -07 000000629 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-18 01:59:48.463 -07 000000629 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 01:59:48.463 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:59:48.463 -07 000000629 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 01:59:48.463 -07 000000437 INF: FPGA: Recv EXLED2ON 
17-03-18 01:59:48.473 -07 000000629 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:59:48.473 -07 000000629 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 01:59:48.473 -07 000000592 INF: FPGA: Recv EXLED1ADCR 2104
17-03-18 01:59:48.483 -07 000000629 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:48.483 -07 000000629 INF: GreenLED: Using Green data: Photodiode ADC 2104 --> 0.9 mW (old method), or 182.8 mW (new method). Difference = 181.9 mW
17-03-18 01:59:48.483 -07 000000629 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 01:59:48.483 -07 000000611 INF: FPGA: Recv EXLED2OFF 
17-03-18 01:59:48.493 -07 000000629 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:48.493 -07 000000629 INF: GreenLED: LED was on for 19 ms
17-03-18 01:59:48.493 -07 000000629 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 01:59:48.493 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 01:59:48.493 -07 000000462 INF: FPGA: Recv EMCUR 
17-03-18 01:59:48.503 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:59:48.503 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 01:59:49.003 -07 000000611 INF: FPGA: Recv EMOUT
17-03-18 01:59:49.003 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 494 ms to get response, and 502 ms overall
17-03-18 01:59:49.003 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 01:59:49.003 -07 000000437 INF: FPGA: Recv EMCUR 
17-03-18 01:59:49.013 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:59:49.013 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:59:49.013 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38427734375, Z-Position -0.126901745244298. ------
17-03-18 01:59:49.013 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:59:49.013 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17900 mm
17-03-18 01:59:49.013 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:59:49.013 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 01:59:49.013 -07 000000437 INF: Y Motor: Moving to 59.9126 mm, started at 75.3843 mm, delta = -15.4717 mm
17-03-18 01:59:49.013 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:59:49.013 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 39102, sync = True, waitForSettling = False)
17-03-18 01:59:49.013 -07 000000462 INF: Z Motor: Moving to -0.178997 mm, started at -0.126902 mm, distance = -52.10 um
17-03-18 01:59:49.023 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:59:49.023 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:59:49.023 -07 000000424 INF: FPGA: Recv YRDPOS 154387
17-03-18 01:59:49.033 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 01:59:49.033 -07 000000437 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:59:49.033 -07 000000437 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 01:59:49.033 -07 000000437 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 01:59:49.033 -07 000000462 INF: FPGA: Xmit ZDACW 39102\n [Z Motor]
17-03-18 01:59:49.033 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 01:59:49.043 -07 000000462 INF: FPGA: 'ZDACW 39102' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 01:59:49.043 -07 000000592 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:59:49.053 -07 000000437 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 01:59:49.063 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:59:49.063 -07 000000611 INF: FPGA: Recv ZDACR 39102
17-03-18 01:59:49.073 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:59:49.073 -07 000000462 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 01:59:49.243 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:59:49.243 -07 000000592 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 224 ms overall
17-03-18 01:59:50.733 -07 000000579 INF: FPGA: Recv YMVTO 122703 24783
17-03-18 01:59:50.733 -07 000000437 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1706 ms overall
17-03-18 01:59:50.733 -07 000000437 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 01:59:50.733 -07 000000437 INF: Y Motor: To move from 75.384 to 59.913 (-15.472 mm) should take 24755 steps, but required 24783 steps (15.489 mm). Slippage = 0.018 mm (0.00%).
17-03-18 01:59:50.733 -07 000000437 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1706 ms, distance = 15.472 mm, average velocity = 9.069 mm/sec
17-03-18 01:59:51.533 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:59:51.533 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 01:59:52.113 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 3.979922,
17-03-18 01:59:53.582 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:59:53.582 -07 000000611 INF: FPGA: Recv YRDPOS 122696
17-03-18 01:59:53.592 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:59:53.592 -07 000000437 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:59:53.612 -07 000000437 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:59:53.612 -07 000000437 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 01:59:53.612 -07 000000437 INF: Y Motor: Moved to 59.9102 after 4600 ms
17-03-18 01:59:53.622 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178997 mm (DAC = 39102)
17-03-18 01:59:53.622 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:53.622 -07 000000611 INF: FPGA: Recv ZSGSRD 37153
17-03-18 01:59:53.632 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:59:53.632 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:53.632 -07 000000592 INF: FPGA: Recv ZSGSRD 37154
17-03-18 01:59:53.642 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:53.642 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:53.642 -07 000000592 INF: FPGA: Recv ZSGSRD 37150
17-03-18 01:59:53.652 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:53.652 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:53.652 -07 000000592 INF: FPGA: Recv ZSGSRD 37153
17-03-18 01:59:53.662 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:53.662 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:53.662 -07 000000592 INF: FPGA: Recv ZSGSRD 37150
17-03-18 01:59:53.672 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:53.672 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:53.672 -07 000000592 INF: FPGA: Recv ZSGSRD 37152
17-03-18 01:59:53.682 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:53.682 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:53.682 -07 000000592 INF: FPGA: Recv ZSGSRD 37154
17-03-18 01:59:53.692 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:53.692 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:53.692 -07 000000592 INF: FPGA: Recv ZSGSRD 37156
17-03-18 01:59:53.702 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:53.702 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:53.702 -07 000000591 INF: FPGA: Recv ZSGSRD 37154
17-03-18 01:59:53.712 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:53.712 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:53.712 -07 000000591 INF: FPGA: Recv ZSGSRD 37154
17-03-18 01:59:53.722 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:53.722 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:59:53.722 -07 000000592 INF: FPGA: Recv ZPIEZORD 33500
17-03-18 01:59:53.732 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:53.732 -07 000000569 INF: Z Motor: Piezo is near 51.6 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.967 V. Piezo Error = -8.1 V.
17-03-18 01:59:53.732 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.0 um, Read 10 ADC samples: Avg = 37153 (-178.1 uncal um), Error = 0.9 uncal um, Median = 37154 (-178.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 37150 (-178.1 uncal um), Max = 37156 (-178.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 01:59:53.732 -07 000000569 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37153, posNoise = 3, negNoise = 3
17-03-18 01:59:53.732 -07 000000569 INF: Z Motor: After move to -0.178997, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:59:53.732 -07 000000569 INF: Z Motor: Settle wait time = 4602 ms, measure time = 109 ms (allowed 150 ms), total time = 4711 ms
17-03-18 01:59:53.732 -07 000000569 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 01:59:53.782 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4764 ms
17-03-18 01:59:53.782 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:59:53.782 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:59:53.782 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:59:53.782 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:59:53.782 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:59:53.782 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:59:53.782 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:59:53.782 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:59:53.782 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 01:59:53.812 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 01:59:53.812 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:59:53.812 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 01:59:53.812 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:59:53.822 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 01:59:53.822 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 01:59:53.832 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:59:53.872 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:59:54.172 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:59:54.172 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:59:54.172 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:59:54.172 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 01:59:54.212 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:59:54.212 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 01:59:54.212 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 01:59:54.302 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 01:59:54.302 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:59:54.302 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:59:54.302 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 01:59:54.412 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:59:54.412 -07 000000512 INF: Image SNR check: start
17-03-18 01:59:54.412 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:59:54.422 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 01:59:54.422 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:59:54.422 -07 000000512 INF: Image SNR check: pass  [peak (Max-Min)=153.30]
17-03-18 01:59:54.422 -07 000000512 INF: Autofocus start
17-03-18 01:59:54.422 -07 000000512 INF: MeasureProfile start
17-03-18 01:59:54.442 -07 000000512 INF: MeasureProfile done
17-03-18 01:59:54.442 -07 000000512 INF: X=32  Z correction [um]=0.09220707
17-03-18 01:59:54.442 -07 000000512 INF: Autofocus finished
17-03-18 01:59:54.622 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:59:54.622 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:59:54.622 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.17900210571398. ----------
17-03-18 01:59:54.622 -07 000000610 INF: Cycle	94	Tile	1	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:59:54.632 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37635, sync = True, waitForSettling = True)
17-03-18 01:59:54.632 -07 000000610 INF: Z Motor: Moving to -0.172282 mm, started at -0.179002 mm, distance = 6.72 um
17-03-18 01:59:54.632 -07 000000610 INF: FPGA: Xmit ZDACW 37635\n [Z Motor]
17-03-18 01:59:54.632 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 01:59:54.642 -07 000000610 INF: FPGA: 'ZDACW 37635' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:59:54.642 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:59:54.642 -07 000000611 INF: FPGA: Recv ZDACR 37635
17-03-18 01:59:54.652 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:54.652 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:59:54.802 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:54.802 -07 000000611 INF: FPGA: Recv ZSGSRD 36103
17-03-18 01:59:54.812 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:59:54.812 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:54.812 -07 000000591 INF: FPGA: Recv ZSGSRD 36109
17-03-18 01:59:54.822 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:54.822 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:54.822 -07 000000512 INF: FPGA: Recv ZSGSRD 36112
17-03-18 01:59:54.832 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:54.832 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:54.832 -07 000000512 INF: FPGA: Recv ZSGSRD 36108
17-03-18 01:59:54.842 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:54.842 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:54.842 -07 000000591 INF: FPGA: Recv ZSGSRD 36105
17-03-18 01:59:54.852 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:54.852 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:54.852 -07 000000592 INF: FPGA: Recv ZSGSRD 36108
17-03-18 01:59:54.862 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:54.862 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:54.862 -07 000000512 INF: FPGA: Recv ZSGSRD 36118
17-03-18 01:59:54.872 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:54.872 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:54.872 -07 000000591 INF: FPGA: Recv ZSGSRD 36107
17-03-18 01:59:54.882 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:54.882 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:54.882 -07 000000579 INF: FPGA: Recv ZSGSRD 36106
17-03-18 01:59:54.892 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:54.892 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:54.892 -07 000000579 INF: FPGA: Recv ZSGSRD 36111
17-03-18 01:59:54.902 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:54.902 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:59:54.902 -07 000000512 INF: FPGA: Recv ZPIEZORD 32079
17-03-18 01:59:54.912 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:54.912 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.743 V. Piezo Error = -8.9 V.
17-03-18 01:59:54.912 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36109 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36108 (-171.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36103 (-171.4 uncal um), Max = 36118 (-171.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 01:59:54.912 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36109, posNoise = 9, negNoise = 6
17-03-18 01:59:54.912 -07 000000610 INF: Z Motor: After move to -0.172282, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:59:54.912 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 01:59:54.912 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:59:54.912 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:59:54.912 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:59:54.912 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:59:54.912 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:59:54.912 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:59:54.912 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:59:54.912 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:59:54.912 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:59:54.912 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:59:54.912 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:59:54.912 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 01:59:54.922 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 01:59:54.922 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:59:54.932 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 01:59:54.932 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:59:54.942 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 01:59:54.942 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:59:54.942 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:59:54.942 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:59:54.952 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 01:59:54.952 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-18 01:59:54.952 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37811 150\n [Camera]
17-03-18 01:59:55.162 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 01:59:55.552 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:59:55.552 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:59:55.552 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:59:55.552 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:59:55.552 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 01:59:55.552 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:59:55.552 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:59:55.552 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:59:55.662 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:59:55.662 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 01:59:55.742 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37811 777
17-03-18 01:59:55.892 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:59:55.942 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 01:59:55.942 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 01:59:55.942 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:59:55.952 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 01:59:55.952 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 01:59:56.062 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 01:59:56.062 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:59:56.062 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:59:56.062 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 01:59:56.072 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 518 ms.
17-03-18 01:59:56.082 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 01:59:56.082 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 01:59:56.082 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:59:56.082 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 01:59:56.082 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 01:59:56.082 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:59:56.092 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:59:56.092 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 01:59:56.092 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:59:56.092 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 01:59:56.272 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 01:59:56.272 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 01:59:56.272 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37811 150' command took 2 ms to send, 1304 ms to get response, and 1315 ms overall
17-03-18 01:59:56.272 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 01:59:56.272 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.172295228237981. ------
17-03-18 01:59:56.282 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:59:56.282 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17831 mm
17-03-18 01:59:56.282 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 01:59:56.282 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:59:56.282 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 01:59:56.282 -07 000000437 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 01:59:56.282 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38952, sync = True, waitForSettling = False)
17-03-18 01:59:56.282 -07 000000462 INF: Z Motor: Moving to -0.178311 mm, started at -0.172295 mm, distance = -6.02 um
17-03-18 01:59:56.292 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:56.292 -07 000000462 INF: FPGA: Xmit ZDACW 38952\n [Z Motor]
17-03-18 01:59:56.292 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 01:59:56.302 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:59:56.302 -07 000000462 INF: FPGA: 'ZDACW 38952' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 01:59:56.302 -07 000000592 INF: FPGA: Recv YRDPOS 122696
17-03-18 01:59:56.312 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 01:59:56.312 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 01:59:56.312 -07 000000437 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:59:56.312 -07 000000437 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 01:59:56.312 -07 000000437 INF: Y Motor: Moving 1332 steps2
17-03-18 01:59:56.322 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:59:56.322 -07 000000424 INF: FPGA: Recv ZDACR 38952
17-03-18 01:59:56.332 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 01:59:56.332 -07 000000462 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 01:59:56.332 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 01:59:56.482 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 01:59:56.482 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 01:59:56.482 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:59:56.482 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 01:59:56.482 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 01:59:56.482 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:59:56.492 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:59:56.492 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 01:59:56.492 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 01:59:56.492 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 01:59:56.511 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 01:59:56.511 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 01:59:56.531 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 01:59:56.531 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 01:59:56.701 -07 000000592 INF: FPGA: Recv YMVTILE
17-03-18 01:59:56.701 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 01:59:56.741 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:59:56.741 -07 000000447 INF: FPGA: Recv YRDPOS 124380
17-03-18 01:59:56.751 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:59:56.751 -07 000000437 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:59:56.751 -07 000000437 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 01:59:56.751 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.832 mm, average velocity = 2.092 mm/sec
17-03-18 01:59:57.471 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 4.014009,
17-03-18 01:59:57.701 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 01:59:57.701 -07 000000591 INF: FPGA: Recv YRDPOS 124380
17-03-18 01:59:57.711 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:59:57.711 -07 000000437 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 01:59:57.731 -07 000000437 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 01:59:57.731 -07 000000437 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 01:59:57.731 -07 000000437 INF: Y Motor: Moved to 60.7324 after 1452 ms (table move)
17-03-18 01:59:57.741 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178311 mm (DAC = 38952)
17-03-18 01:59:57.741 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:57.741 -07 000000592 INF: FPGA: Recv ZSGSRD 37046
17-03-18 01:59:57.751 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 01:59:57.751 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:57.751 -07 000000447 INF: FPGA: Recv ZSGSRD 37050
17-03-18 01:59:57.761 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:57.761 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:57.761 -07 000000591 INF: FPGA: Recv ZSGSRD 37050
17-03-18 01:59:57.771 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:57.771 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:57.771 -07 000000611 INF: FPGA: Recv ZSGSRD 37049
17-03-18 01:59:57.781 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:57.781 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:57.781 -07 000000569 INF: FPGA: Recv ZSGSRD 37049
17-03-18 01:59:57.791 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:57.791 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:57.791 -07 000000447 INF: FPGA: Recv ZSGSRD 37041
17-03-18 01:59:57.801 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:57.801 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:57.801 -07 000000592 INF: FPGA: Recv ZSGSRD 37044
17-03-18 01:59:57.811 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:57.811 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:57.811 -07 000000424 INF: FPGA: Recv ZSGSRD 37051
17-03-18 01:59:57.821 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:57.821 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:57.821 -07 000000592 INF: FPGA: Recv ZSGSRD 37040
17-03-18 01:59:57.831 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:57.831 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:57.831 -07 000000437 INF: FPGA: Recv ZSGSRD 37052
17-03-18 01:59:57.841 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:57.841 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:59:57.841 -07 000000611 INF: FPGA: Recv ZPIEZORD 33333
17-03-18 01:59:57.851 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:57.851 -07 000000512 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.944 V. Piezo Error = -8.2 V.
17-03-18 01:59:57.851 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.3 um, Read 10 ADC samples: Avg = 37047 (-177.4 uncal um), Error = 0.9 uncal um, Median = 37049 (-177.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37040 (-177.4 uncal um), Max = 37052 (-177.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 01:59:57.851 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37047, posNoise = 5, negNoise = 7
17-03-18 01:59:57.851 -07 000000512 INF: Z Motor: After move to -0.178311, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:59:57.851 -07 000000512 INF: Z Motor: Settle wait time = 1455 ms, measure time = 108 ms (allowed 150 ms), total time = 1563 ms
17-03-18 01:59:57.851 -07 000000512 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 01:59:57.901 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 01:59:57.901 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 01:59:57.901 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:59:57.901 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:59:57.901 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:59:57.901 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:59:57.901 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 01:59:57.901 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:59:57.901 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:59:57.901 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 01:59:57.911 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 01:59:57.911 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 01:59:57.921 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 01:59:57.921 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 01:59:57.921 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 01:59:57.971 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 01:59:58.271 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 01:59:58.271 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 01:59:58.271 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 01:59:58.271 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 01:59:58.311 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 01:59:58.311 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 01:59:58.311 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-18 01:59:58.401 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 128 ms.
17-03-18 01:59:58.401 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:59:58.401 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 01:59:58.401 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-18 01:59:58.411 -07 000000462 INF: Autofocus start
17-03-18 01:59:58.411 -07 000000462 INF: MeasureProfile start
17-03-18 01:59:58.411 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 01:59:58.411 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 01:59:58.421 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 01:59:58.421 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 01:59:58.421 -07 000000462 INF: MeasureProfile done
17-03-18 01:59:58.421 -07 000000462 INF: X=0  Z correction [um]=-0.0713522
17-03-18 01:59:58.421 -07 000000462 INF: Autofocus finished
17-03-18 01:59:58.621 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 01:59:58.621 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 01:59:58.621 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.178321139226953. ----------
17-03-18 01:59:58.621 -07 000000610 INF: Cycle	94	Tile	2	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 01:59:58.631 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37449, sync = True, waitForSettling = True)
17-03-18 01:59:58.631 -07 000000610 INF: Z Motor: Moving to -0.171431 mm, started at -0.178321 mm, distance = 6.89 um
17-03-18 01:59:58.631 -07 000000610 INF: FPGA: Xmit ZDACW 37449\n [Z Motor]
17-03-18 01:59:58.631 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 01:59:58.641 -07 000000610 INF: FPGA: 'ZDACW 37449' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 01:59:58.641 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 01:59:58.641 -07 000000592 INF: FPGA: Recv ZDACR 37449
17-03-18 01:59:58.651 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:58.651 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 01:59:58.801 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:58.801 -07 000000512 INF: FPGA: Recv ZSGSRD 35980
17-03-18 01:59:58.811 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 01:59:58.811 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:58.811 -07 000000512 INF: FPGA: Recv ZSGSRD 35978
17-03-18 01:59:58.821 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:58.821 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:58.821 -07 000000569 INF: FPGA: Recv ZSGSRD 35978
17-03-18 01:59:58.831 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:58.831 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:58.831 -07 000000512 INF: FPGA: Recv ZSGSRD 35971
17-03-18 01:59:58.841 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:58.841 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:58.841 -07 000000512 INF: FPGA: Recv ZSGSRD 35974
17-03-18 01:59:58.851 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:58.851 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:58.851 -07 000000512 INF: FPGA: Recv ZSGSRD 35980
17-03-18 01:59:58.861 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:58.861 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:58.861 -07 000000569 INF: FPGA: Recv ZSGSRD 35975
17-03-18 01:59:58.871 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:58.871 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:58.871 -07 000000447 INF: FPGA: Recv ZSGSRD 35972
17-03-18 01:59:58.881 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:58.881 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:58.881 -07 000000569 INF: FPGA: Recv ZSGSRD 35978
17-03-18 01:59:58.891 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:58.891 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 01:59:58.891 -07 000000462 INF: FPGA: Recv ZSGSRD 35978
17-03-18 01:59:58.901 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:58.901 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 01:59:58.901 -07 000000462 INF: FPGA: Recv ZPIEZORD 31888
17-03-18 01:59:58.911 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 01:59:58.911 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.714 V. Piezo Error = -9.0 V.
17-03-18 01:59:58.911 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35976 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35978 (-170.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35971 (-170.5 uncal um), Max = 35980 (-170.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 01:59:58.911 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35976, posNoise = 4, negNoise = 5
17-03-18 01:59:58.911 -07 000000610 INF: Z Motor: After move to -0.171431, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 01:59:58.911 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 01:59:58.911 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 01:59:58.911 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 01:59:58.911 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 01:59:58.911 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 01:59:58.911 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 01:59:58.911 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 01:59:58.911 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 01:59:58.911 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 01:59:58.911 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 01:59:58.911 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 01:59:58.911 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 01:59:58.911 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 01:59:58.921 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 01:59:58.921 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 01:59:58.921 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 01:59:58.921 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 01:59:58.931 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 01:59:58.931 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:59:58.931 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 01:59:58.931 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 01:59:58.931 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37626 150\n [Camera]
17-03-18 01:59:59.131 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 01:59:59.521 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 01:59:59.531 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 01:59:59.531 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 01:59:59.531 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 01:59:59.531 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1170533816, 0x0, 391868352) start.
17-03-18 01:59:59.531 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 01:59:59.531 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 01:59:59.531 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 01:59:59.531 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 01:59:59.531 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 01:59:59.721 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37626 777
17-03-18 01:59:59.871 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 01:59:59.921 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 01:59:59.921 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 01:59:59.921 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:59:59.921 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1170533816, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 01:59:59.921 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 01:59:59.921 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 01:59:59.921 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:59:59.931 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 01:59:59.931 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 01:59:59.931 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:00:00.061 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:00:00.061 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:00:00.061 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:00:00.061 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:00:00.061 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:00:00.061 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:00:00.061 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:00:00.061 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:00:00.181 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:00:00.181 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 02:00:00.251 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 02:00:00.251 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:00:00.251 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37626 150' command took 2 ms to send, 1303 ms to get response, and 1314 ms overall
17-03-18 02:00:00.251 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:00:00.251 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.171440808023127. ------
17-03-18 02:00:00.251 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:00:00.261 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17811 mm
17-03-18 02:00:00.261 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:00:00.261 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 02:00:00.261 -07 000000462 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 02:00:00.271 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:00.461 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 02:00:00.461 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:00:00.461 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:00.471 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:00:00.471 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:00:00.491 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38909, sync = True, waitForSettling = False)
17-03-18 02:00:00.491 -07 000000569 INF: Z Motor: Moving to -0.178114 mm, started at -0.171441 mm, distance = -6.67 um
17-03-18 02:00:00.501 -07 000000569 INF: FPGA: Xmit ZDACW 38909\n [Z Motor]
17-03-18 02:00:00.581 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 02:00:00.581 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:00:00.581 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:00.581 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:00:00.591 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 524 ms.
17-03-18 02:00:00.601 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:00:00.601 -07 000000579 INF: FPGA: Recv YRDPOS 124380
17-03-18 02:00:00.601 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:00:00.601 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 322 ms to get response, and 339 ms overall
17-03-18 02:00:00.601 -07 000000569 INF: FPGA: 'ZDACW 38909' command took 0 ms to send, 92 ms to get response, and 102 ms overall
17-03-18 02:00:00.601 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:00:00.601 -07 000000462 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:00.601 -07 000000462 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:00:00.601 -07 000000462 INF: Y Motor: Moving 1344 steps-21
17-03-18 02:00:00.601 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 332 ms to get response, and 342 ms overall
17-03-18 02:00:00.601 -07 000000579 INF: FPGA: Recv ZDACR 38909
17-03-18 02:00:00.611 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:00:00.611 -07 000000569 INF: Z Motor: MoveAbsStepped took 110 ms (did NOT wait for settling yet))
17-03-18 02:00:00.611 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:00:00.621 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:00:00.820 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:00:00.820 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 219 ms overall
17-03-18 02:00:00.980 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 02:00:00.980 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 02:00:01.030 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:01.030 -07 000000579 INF: FPGA: Recv YRDPOS 126081
17-03-18 02:00:01.040 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:00:01.040 -07 000000462 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:01.040 -07 000000462 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 02:00:01.040 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.840 mm, average velocity = 2.182 mm/sec
17-03-18 02:00:01.530 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:00:01.530 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:00:01.990 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:01.990 -07 000000579 INF: FPGA: Recv YRDPOS 126081
17-03-18 02:00:02.000 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:02.000 -07 000000462 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:02.030 -07 000000462 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:00:02.030 -07 000000462 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:00:02.030 -07 000000462 INF: Y Motor: Moved to 61.5630 after 1771 ms (table move)
17-03-18 02:00:02.030 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178114 mm (DAC = 38909)
17-03-18 02:00:02.030 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:02.040 -07 000000629 INF: FPGA: Recv ZSGSRD 37026
17-03-18 02:00:02.040 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 02:00:02.040 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:02.040 -07 000000611 INF: FPGA: Recv ZSGSRD 37013
17-03-18 02:00:02.050 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:00:02.050 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:02.050 -07 000000579 INF: FPGA: Recv ZSGSRD 37018
17-03-18 02:00:02.060 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:02.060 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:02.060 -07 000000611 INF: FPGA: Recv ZSGSRD 37021
17-03-18 02:00:02.070 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:02.070 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:02.070 -07 000000579 INF: FPGA: Recv ZSGSRD 37013
17-03-18 02:00:02.080 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:02.080 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:02.080 -07 000000611 INF: FPGA: Recv ZSGSRD 37017
17-03-18 02:00:02.090 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:02.090 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:02.090 -07 000000579 INF: FPGA: Recv ZSGSRD 37009
17-03-18 02:00:02.100 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:02.100 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:02.100 -07 000000629 INF: FPGA: Recv ZSGSRD 37007
17-03-18 02:00:02.110 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:02.110 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:02.110 -07 000000579 INF: FPGA: Recv ZSGSRD 37015
17-03-18 02:00:02.120 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:02.120 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:02.120 -07 000000611 INF: FPGA: Recv ZSGSRD 37018
17-03-18 02:00:02.130 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:02.130 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:00:02.130 -07 000000579 INF: FPGA: Recv ZPIEZORD 33305
17-03-18 02:00:02.140 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:02.140 -07 000000592 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.937 V. Piezo Error = -8.2 V.
17-03-18 02:00:02.140 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.1 um, Read 10 ADC samples: Avg = 37016 (-177.2 uncal um), Error = 0.9 uncal um, Median = 37016 (-177.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 37007 (-177.2 uncal um), Max = 37026 (-177.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:00:02.140 -07 000000592 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37016, posNoise = 10, negNoise = 9
17-03-18 02:00:02.140 -07 000000592 INF: Z Motor: After move to -0.178114, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:00:02.140 -07 000000592 INF: Z Motor: Settle wait time = 1538 ms, measure time = 102 ms (allowed 150 ms), total time = 1640 ms
17-03-18 02:00:02.140 -07 000000592 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 02:00:02.190 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1930 ms
17-03-18 02:00:02.190 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:00:02.190 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:00:02.190 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:00:02.190 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:00:02.190 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:00:02.190 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:00:02.190 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:00:02.190 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:00:02.190 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:00:02.200 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:00:02.200 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:00:02.200 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:00:02.200 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:00:02.210 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:00:02.250 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:00:02.550 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:00:02.550 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:00:02.550 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:00:02.550 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 02:00:02.590 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:00:02.590 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 02:00:02.590 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:00:02.670 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:00:02.670 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:02.670 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:00:02.670 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:00:02.690 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:00:02.690 -07 000000569 INF: Autofocus start
17-03-18 02:00:02.690 -07 000000569 INF: MeasureProfile start
17-03-18 02:00:02.690 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:00:02.700 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:00:02.700 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:00:02.710 -07 000000569 INF: MeasureProfile done
17-03-18 02:00:02.710 -07 000000569 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:00:02.710 -07 000000569 INF: Autofocus finished
17-03-18 02:00:02.830 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 3.994908,
17-03-18 02:00:02.900 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:00:02.900 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:00:02.900 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.178121988650559. ----------
17-03-18 02:00:02.900 -07 000000610 INF: Cycle	94	Tile	3	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:00:02.910 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37423, sync = True, waitForSettling = True)
17-03-18 02:00:02.910 -07 000000610 INF: Z Motor: Moving to -0.171312 mm, started at -0.178122 mm, distance = 6.81 um
17-03-18 02:00:02.910 -07 000000610 INF: FPGA: Xmit ZDACW 37423\n [Z Motor]
17-03-18 02:00:02.910 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:00:02.920 -07 000000610 INF: FPGA: 'ZDACW 37423' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:02.920 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:00:02.920 -07 000000437 INF: FPGA: Recv ZDACR 37423
17-03-18 02:00:02.930 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:02.930 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:00:03.080 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:03.080 -07 000000424 INF: FPGA: Recv ZSGSRD 35954
17-03-18 02:00:03.090 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:03.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:03.090 -07 000000462 INF: FPGA: Recv ZSGSRD 35959
17-03-18 02:00:03.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:03.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:03.100 -07 000000579 INF: FPGA: Recv ZSGSRD 35952
17-03-18 02:00:03.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:03.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:03.110 -07 000000437 INF: FPGA: Recv ZSGSRD 35959
17-03-18 02:00:03.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:03.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:03.120 -07 000000424 INF: FPGA: Recv ZSGSRD 35957
17-03-18 02:00:03.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:03.130 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:03.130 -07 000000437 INF: FPGA: Recv ZSGSRD 35955
17-03-18 02:00:03.140 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:03.140 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:03.140 -07 000000424 INF: FPGA: Recv ZSGSRD 35962
17-03-18 02:00:03.150 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:03.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:03.150 -07 000000462 INF: FPGA: Recv ZSGSRD 35953
17-03-18 02:00:03.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:03.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:03.160 -07 000000424 INF: FPGA: Recv ZSGSRD 35957
17-03-18 02:00:03.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:03.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:03.170 -07 000000629 INF: FPGA: Recv ZSGSRD 35954
17-03-18 02:00:03.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:03.180 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:00:03.180 -07 000000462 INF: FPGA: Recv ZPIEZORD 31874
17-03-18 02:00:03.190 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:03.190 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.710 V. Piezo Error = -9.0 V.
17-03-18 02:00:03.190 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.3 um, Read 10 ADC samples: Avg = 35956 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35956 (-170.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35952 (-170.4 uncal um), Max = 35962 (-170.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:00:03.190 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35956, posNoise = 6, negNoise = 4
17-03-18 02:00:03.190 -07 000000610 INF: Z Motor: After move to -0.171312, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:00:03.190 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:00:03.190 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:00:03.190 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:00:03.190 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:00:03.190 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:00:03.190 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:00:03.190 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:00:03.190 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:00:03.190 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:00:03.190 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:00:03.190 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:00:03.190 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:00:03.190 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:00:03.190 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:00:03.190 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:00:03.200 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:00:03.200 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:00:03.200 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:00:03.200 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:00:03.210 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:00:03.210 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:00:03.210 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37600 150\n [Camera]
17-03-18 02:00:03.410 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:00:03.800 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:00:03.800 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:00:03.800 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:00:03.810 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:00:03.810 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:00:03.810 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:00:03.810 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:00:03.810 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:00:03.810 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:00:03.810 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:00:03.990 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37600 777
17-03-18 02:00:04.150 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:00:04.200 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:00:04.200 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:00:04.200 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:04.210 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:00:04.210 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:00:04.210 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 02:00:04.210 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:00:04.210 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:04.210 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:00:04.220 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:00:04.330 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:00:04.330 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:00:04.330 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:00:04.340 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:00:04.340 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:00:04.340 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:00:04.340 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:00:04.340 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 02:00:04.460 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:00:04.460 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 02:00:04.520 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 02:00:04.530 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:00:04.530 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37600 150' command took 2 ms to send, 1309 ms to get response, and 1315 ms overall
17-03-18 02:00:04.530 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:00:04.530 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.171312323780292. ------
17-03-18 02:00:04.530 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:00:04.530 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17759 mm
17-03-18 02:00:04.530 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:00:04.530 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 02:00:04.530 -07 000000512 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 02:00:04.540 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:04.730 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 02:00:04.730 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:00:04.730 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:04.740 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:00:04.740 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 02:00:04.750 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 38794, sync = True, waitForSettling = False)
17-03-18 02:00:04.750 -07 000000447 INF: Z Motor: Moving to -0.177588 mm, started at -0.171312 mm, distance = -6.28 um
17-03-18 02:00:04.750 -07 000000447 INF: FPGA: Xmit ZDACW 38794\n [Z Motor]
17-03-18 02:00:04.849 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 02:00:04.849 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:00:04.849 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:04.849 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:00:04.849 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-18 02:00:04.859 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:00:04.859 -07 000000569 INF: FPGA: Recv YRDPOS 126082
17-03-18 02:00:04.859 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:00:04.859 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 316 ms to get response, and 328 ms overall
17-03-18 02:00:04.859 -07 000000512 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:04.859 -07 000000447 INF: FPGA: 'ZDACW 38794' command took 0 ms to send, 106 ms to get response, and 108 ms overall
17-03-18 02:00:04.859 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:00:04.859 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 326 ms to get response, and 331 ms overall
17-03-18 02:00:04.859 -07 000000569 INF: FPGA: Recv ZDACR 38794
17-03-18 02:00:04.869 -07 000000512 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:00:04.869 -07 000000512 INF: Y Motor: Moving 1343 steps-20
17-03-18 02:00:04.869 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:00:04.869 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 02:00:04.869 -07 000000447 INF: Z Motor: MoveAbsStepped took 112 ms (did NOT wait for settling yet))
17-03-18 02:00:04.879 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:00:05.069 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:00:05.069 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 205 ms overall
17-03-18 02:00:05.249 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 02:00:05.249 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:00:05.299 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:05.299 -07 000000591 INF: FPGA: Recv YRDPOS 127785
17-03-18 02:00:05.309 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:00:05.309 -07 000000512 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:05.309 -07 000000512 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 02:00:05.309 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.840 mm, average velocity = 2.164 mm/sec
17-03-18 02:00:06.259 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:06.259 -07 000000591 INF: FPGA: Recv YRDPOS 127785
17-03-18 02:00:06.269 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:00:06.269 -07 000000512 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:06.289 -07 000000512 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:00:06.289 -07 000000512 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:00:06.289 -07 000000512 INF: Y Motor: Moved to 62.3950 after 1760 ms (table move)
17-03-18 02:00:06.299 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177588 mm (DAC = 38794)
17-03-18 02:00:06.299 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:06.299 -07 000000512 INF: FPGA: Recv ZSGSRD 36932
17-03-18 02:00:06.309 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:00:06.309 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:06.309 -07 000000447 INF: FPGA: Recv ZSGSRD 36936
17-03-18 02:00:06.319 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:06.319 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:06.319 -07 000000512 INF: FPGA: Recv ZSGSRD 36940
17-03-18 02:00:06.329 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:06.329 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:06.329 -07 000000447 INF: FPGA: Recv ZSGSRD 36935
17-03-18 02:00:06.339 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:06.339 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:06.339 -07 000000447 INF: FPGA: Recv ZSGSRD 36928
17-03-18 02:00:06.349 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:06.349 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:06.349 -07 000000447 INF: FPGA: Recv ZSGSRD 36929
17-03-18 02:00:06.359 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:06.359 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:06.359 -07 000000512 INF: FPGA: Recv ZSGSRD 36932
17-03-18 02:00:06.369 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:06.369 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:06.369 -07 000000569 INF: FPGA: Recv ZSGSRD 36941
17-03-18 02:00:06.379 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:06.379 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:06.379 -07 000000512 INF: FPGA: Recv ZSGSRD 36939
17-03-18 02:00:06.389 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:06.389 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:06.389 -07 000000591 INF: FPGA: Recv ZSGSRD 36934
17-03-18 02:00:06.399 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:06.399 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:00:06.399 -07 000000591 INF: FPGA: Recv ZPIEZORD 33209
17-03-18 02:00:06.409 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:06.409 -07 000000592 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.920 V. Piezo Error = -8.3 V.
17-03-18 02:00:06.409 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.6 um, Read 10 ADC samples: Avg = 36935 (-176.7 uncal um), Error = 0.9 uncal um, Median = 36934 (-176.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36928 (-176.7 uncal um), Max = 36941 (-176.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:00:06.409 -07 000000592 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36935, posNoise = 6, negNoise = 7
17-03-18 02:00:06.409 -07 000000592 INF: Z Motor: After move to -0.177588, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:00:06.409 -07 000000592 INF: Z Motor: Settle wait time = 1543 ms, measure time = 109 ms (allowed 150 ms), total time = 1652 ms
17-03-18 02:00:06.409 -07 000000592 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:00:06.459 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1925 ms
17-03-18 02:00:06.459 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:00:06.459 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:00:06.459 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:00:06.459 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:00:06.459 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:00:06.459 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:00:06.459 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:00:06.459 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:00:06.459 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:00:06.469 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:00:06.469 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:00:06.469 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:00:06.469 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:00:06.479 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:00:06.519 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:00:06.539 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:00:06.539 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:00:06.819 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:00:06.819 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:00:06.819 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:00:06.819 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 02:00:06.859 -07 000000592 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:00:06.859 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 02:00:06.859 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 385 ms overall
17-03-18 02:00:06.949 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 122 ms.
17-03-18 02:00:06.949 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:06.949 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:00:06.949 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-18 02:00:06.959 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:00:06.959 -07 000000629 INF: Autofocus start
17-03-18 02:00:06.959 -07 000000629 INF: MeasureProfile start
17-03-18 02:00:06.959 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:00:06.969 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:00:06.969 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:00:06.969 -07 000000629 INF: MeasureProfile done
17-03-18 02:00:06.969 -07 000000629 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:00:06.969 -07 000000629 INF: Autofocus finished
17-03-18 02:00:07.169 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:00:07.169 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:00:07.169 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.177601627467076. ----------
17-03-18 02:00:07.169 -07 000000610 INF: Cycle	94	Tile	4	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:00:07.179 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37309, sync = True, waitForSettling = True)
17-03-18 02:00:07.179 -07 000000610 INF: Z Motor: Moving to -0.170790 mm, started at -0.177602 mm, distance = 6.81 um
17-03-18 02:00:07.179 -07 000000610 INF: FPGA: Xmit ZDACW 37309\n [Z Motor]
17-03-18 02:00:07.179 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:00:07.189 -07 000000610 INF: FPGA: 'ZDACW 37309' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:07.189 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:00:07.189 -07 000000512 INF: FPGA: Recv ZDACR 37309
17-03-18 02:00:07.199 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:07.199 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:00:07.349 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:07.349 -07 000000579 INF: FPGA: Recv ZSGSRD 35877
17-03-18 02:00:07.359 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:00:07.359 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:07.359 -07 000000462 INF: FPGA: Recv ZSGSRD 35881
17-03-18 02:00:07.369 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:07.369 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:07.369 -07 000000592 INF: FPGA: Recv ZSGSRD 35871
17-03-18 02:00:07.379 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:07.379 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:07.379 -07 000000629 INF: FPGA: Recv ZSGSRD 35873
17-03-18 02:00:07.389 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:07.389 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:07.389 -07 000000579 INF: FPGA: Recv ZSGSRD 35883
17-03-18 02:00:07.399 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:07.399 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:07.399 -07 000000629 INF: FPGA: Recv ZSGSRD 35872
17-03-18 02:00:07.409 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:07.409 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:07.409 -07 000000569 INF: FPGA: Recv ZSGSRD 35875
17-03-18 02:00:07.419 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:07.419 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:07.419 -07 000000629 INF: FPGA: Recv ZSGSRD 35879
17-03-18 02:00:07.429 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:07.429 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:07.429 -07 000000462 INF: FPGA: Recv ZSGSRD 35884
17-03-18 02:00:07.439 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:07.439 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:07.439 -07 000000512 INF: FPGA: Recv ZSGSRD 35875
17-03-18 02:00:07.449 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:07.449 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:00:07.449 -07 000000462 INF: FPGA: Recv ZPIEZORD 31790
17-03-18 02:00:07.459 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:07.459 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.693 V. Piezo Error = -9.0 V.
17-03-18 02:00:07.459 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35877 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35876 (-169.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35871 (-169.9 uncal um), Max = 35884 (-170.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:00:07.459 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35877, posNoise = 7, negNoise = 6
17-03-18 02:00:07.459 -07 000000610 INF: Z Motor: After move to -0.170790, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:00:07.459 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:00:07.459 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:00:07.459 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:00:07.459 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:00:07.459 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:00:07.459 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:00:07.459 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:00:07.459 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:00:07.459 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:00:07.459 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:00:07.459 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:00:07.459 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:00:07.459 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:00:07.469 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:00:07.469 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:00:07.469 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:00:07.469 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:00:07.479 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:00:07.479 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:00:07.479 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 02:00:07.479 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:00:07.489 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37486 150\n [Camera]
17-03-18 02:00:07.689 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:00:08.079 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:00:08.079 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:00:08.079 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:00:08.079 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:00:08.079 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:00:08.079 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:00:08.079 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:00:08.079 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:00:08.089 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:00:08.089 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:00:08.189 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 3.996267,
17-03-18 02:00:08.269 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37486 777
17-03-18 02:00:08.419 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:00:08.479 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:00:08.479 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:00:08.479 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:08.479 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 02:00:08.479 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:00:08.479 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:08.479 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:00:08.479 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:00:08.479 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:00:08.489 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 02:00:08.609 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:00:08.609 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:00:08.609 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:00:08.609 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:00:08.609 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:00:08.609 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:00:08.609 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:00:08.609 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:00:08.609 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:00:08.609 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:00:08.799 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 02:00:08.799 -07 000000592 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:00:08.799 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37486 150' command took 2 ms to send, 1305 ms to get response, and 1315 ms overall
17-03-18 02:00:08.799 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:00:08.799 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.170804811021093. ------
17-03-18 02:00:08.809 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:00:08.809 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17738 mm
17-03-18 02:00:08.809 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:00:08.809 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 02:00:08.809 -07 000000591 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 02:00:08.819 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:09.018 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 02:00:09.018 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:00:09.018 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:09.018 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 02:00:09.018 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 02:00:09.018 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:09.018 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:00:09.018 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 02:00:09.018 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:00:09.028 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 02:00:09.028 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 38748, sync = True, waitForSettling = False)
17-03-18 02:00:09.028 -07 000000629 INF: Z Motor: Moving to -0.177377 mm, started at -0.170805 mm, distance = -6.57 um
17-03-18 02:00:09.028 -07 000000629 INF: FPGA: Xmit ZDACW 38748\n [Z Motor]
17-03-18 02:00:09.038 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:00:09.038 -07 000000447 INF: FPGA: Recv YRDPOS 127785
17-03-18 02:00:09.038 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 225 ms to get response, and 233 ms overall
17-03-18 02:00:09.038 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 215 ms to get response, and 230 ms overall
17-03-18 02:00:09.038 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 02:00:09.038 -07 000000629 INF: FPGA: 'ZDACW 38748' command took 0 ms to send, 6 ms to get response, and 8 ms overall
17-03-18 02:00:09.038 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:00:09.038 -07 000000591 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:09.038 -07 000000591 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:00:09.038 -07 000000591 INF: Y Motor: Moving 1340 steps-16
17-03-18 02:00:09.048 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:00:09.048 -07 000000447 INF: FPGA: Recv ZDACR 38748
17-03-18 02:00:09.048 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:00:09.048 -07 000000629 INF: Z Motor: MoveAbsStepped took 12 ms (did NOT wait for settling yet))
17-03-18 02:00:09.058 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:00:09.258 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:00:09.258 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 217 ms overall
17-03-18 02:00:09.418 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 02:00:09.418 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-18 02:00:09.468 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:09.468 -07 000000447 INF: FPGA: Recv YRDPOS 129481
17-03-18 02:00:09.478 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:00:09.478 -07 000000591 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:09.478 -07 000000591 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:00:09.478 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.838 mm, average velocity = 2.198 mm/sec
17-03-18 02:00:10.428 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:10.428 -07 000000629 INF: FPGA: Recv YRDPOS 129482
17-03-18 02:00:10.438 -07 000000591 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:10.438 -07 000000591 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:10.458 -07 000000591 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:00:10.458 -07 000000591 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:00:10.458 -07 000000591 INF: Y Motor: Moved to 63.2236 after 1653 ms (table move)
17-03-18 02:00:10.468 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177377 mm (DAC = 38748)
17-03-18 02:00:10.468 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:10.468 -07 000000462 INF: FPGA: Recv ZSGSRD 36910
17-03-18 02:00:10.478 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:00:10.478 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:10.478 -07 000000447 INF: FPGA: Recv ZSGSRD 36904
17-03-18 02:00:10.488 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:10.488 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:10.488 -07 000000462 INF: FPGA: Recv ZSGSRD 36910
17-03-18 02:00:10.498 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:10.498 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:10.498 -07 000000447 INF: FPGA: Recv ZSGSRD 36903
17-03-18 02:00:10.508 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:10.508 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:10.508 -07 000000591 INF: FPGA: Recv ZSGSRD 36906
17-03-18 02:00:10.518 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:10.518 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:10.518 -07 000000462 INF: FPGA: Recv ZSGSRD 36898
17-03-18 02:00:10.528 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:10.528 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:10.528 -07 000000462 INF: FPGA: Recv ZSGSRD 36896
17-03-18 02:00:10.538 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:10.538 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:10.538 -07 000000447 INF: FPGA: Recv ZSGSRD 36900
17-03-18 02:00:10.548 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:10.548 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:10.548 -07 000000462 INF: FPGA: Recv ZSGSRD 36894
17-03-18 02:00:10.558 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:10.558 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:10.558 -07 000000629 INF: FPGA: Recv ZSGSRD 36897
17-03-18 02:00:10.568 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:10.568 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:00:10.568 -07 000000462 INF: FPGA: Recv ZPIEZORD 33173
17-03-18 02:00:10.578 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:10.578 -07 000000592 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.913 V. Piezo Error = -8.3 V.
17-03-18 02:00:10.578 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.4 um, Read 10 ADC samples: Avg = 36902 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36902 (-176.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36894 (-176.4 uncal um), Max = 36910 (-176.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:00:10.578 -07 000000592 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36902, posNoise = 8, negNoise = 8
17-03-18 02:00:10.578 -07 000000592 INF: Z Motor: After move to -0.177377, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:00:10.578 -07 000000592 INF: Z Motor: Settle wait time = 1435 ms, measure time = 107 ms (allowed 150 ms), total time = 1542 ms
17-03-18 02:00:10.578 -07 000000592 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:00:10.628 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1817 ms
17-03-18 02:00:10.628 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:00:10.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:00:10.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:00:10.628 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:00:10.628 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:00:10.628 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:00:10.628 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:00:10.638 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:00:10.638 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:00:10.638 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:00:10.638 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:00:10.648 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:00:10.648 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 02:00:10.648 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:00:10.688 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:00:10.988 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:00:10.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:00:10.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:00:10.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 02:00:11.028 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:00:11.028 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 02:00:11.028 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:00:11.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:00:11.108 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:11.108 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:00:11.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:00:11.128 -07 000000592 INF: Autofocus start
17-03-18 02:00:11.128 -07 000000592 INF: MeasureProfile start
17-03-18 02:00:11.128 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:00:11.128 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:00:11.138 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:00:11.138 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:00:11.138 -07 000000592 INF: MeasureProfile done
17-03-18 02:00:11.138 -07 000000592 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:00:11.138 -07 000000592 INF: Autofocus finished
17-03-18 02:00:11.338 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:00:11.338 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:00:11.338 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.177389628466398. ----------
17-03-18 02:00:11.338 -07 000000610 INF: Cycle	94	Tile	5	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:00:11.348 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37263, sync = True, waitForSettling = True)
17-03-18 02:00:11.348 -07 000000610 INF: Z Motor: Moving to -0.170579 mm, started at -0.177390 mm, distance = 6.81 um
17-03-18 02:00:11.348 -07 000000610 INF: FPGA: Xmit ZDACW 37263\n [Z Motor]
17-03-18 02:00:11.348 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 02:00:11.358 -07 000000610 INF: FPGA: 'ZDACW 37263' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:00:11.358 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:00:11.358 -07 000000591 INF: FPGA: Recv ZDACR 37263
17-03-18 02:00:11.368 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:11.368 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:00:11.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:11.518 -07 000000561 INF: FPGA: Recv ZSGSRD 35841
17-03-18 02:00:11.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:00:11.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:11.528 -07 000000447 INF: FPGA: Recv ZSGSRD 35848
17-03-18 02:00:11.528 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:00:11.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:00:11.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:11.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:11.538 -07 000000462 INF: FPGA: Recv ZSGSRD 35846
17-03-18 02:00:11.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:11.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:11.548 -07 000000591 INF: FPGA: Recv ZSGSRD 35840
17-03-18 02:00:11.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:11.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:11.558 -07 000000629 INF: FPGA: Recv ZSGSRD 35844
17-03-18 02:00:11.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:11.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:11.568 -07 000000591 INF: FPGA: Recv ZSGSRD 35843
17-03-18 02:00:11.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:11.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:11.578 -07 000000437 INF: FPGA: Recv ZSGSRD 35850
17-03-18 02:00:11.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:11.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:11.588 -07 000000561 INF: FPGA: Recv ZSGSRD 35844
17-03-18 02:00:11.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:11.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:11.598 -07 000000629 INF: FPGA: Recv ZSGSRD 35841
17-03-18 02:00:11.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:11.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:11.608 -07 000000591 INF: FPGA: Recv ZSGSRD 35845
17-03-18 02:00:11.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:11.618 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:00:11.618 -07 000000629 INF: FPGA: Recv ZPIEZORD 31729
17-03-18 02:00:11.628 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:11.628 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.686 V. Piezo Error = -9.1 V.
17-03-18 02:00:11.628 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35844 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35844 (-169.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35840 (-169.7 uncal um), Max = 35850 (-169.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:00:11.628 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35844, posNoise = 6, negNoise = 4
17-03-18 02:00:11.628 -07 000000610 INF: Z Motor: After move to -0.170579, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:00:11.628 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:00:11.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:00:11.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:00:11.628 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:00:11.628 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:00:11.628 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:00:11.628 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:00:11.628 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:00:11.628 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:00:11.628 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:00:11.628 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:00:11.628 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:00:11.628 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:00:11.638 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:00:11.638 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:00:11.638 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:00:11.638 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:00:11.648 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:00:11.648 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:00:11.648 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:00:11.648 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:00:11.648 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37440 150\n [Camera]
17-03-18 02:00:11.848 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:00:12.248 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:00:12.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:00:12.248 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:00:12.248 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:00:12.248 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:00:12.248 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:00:12.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:00:12.248 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:00:12.248 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:00:12.248 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:00:12.438 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37440 777
17-03-18 02:00:12.588 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:00:12.628 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 02:00:12.628 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 02:00:12.628 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:12.628 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:00:12.638 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 02:00:12.638 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:00:12.638 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:12.638 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:00:12.638 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:00:12.638 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:00:12.778 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:00:12.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:00:12.778 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:00:12.898 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:00:12.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:00:12.898 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:00:12.898 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:00:12.898 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 02:00:12.898 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:00:12.908 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:00:12.968 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 02:00:12.968 -07 000000592 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:00:12.968 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37440 150' command took 2 ms to send, 1304 ms to get response, and 1316 ms overall
17-03-18 02:00:12.968 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:00:12.968 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.170592812020415. ------
17-03-18 02:00:12.978 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:00:12.978 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17709 mm
17-03-18 02:00:12.978 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:00:12.978 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:00:12.978 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 02:00:12.978 -07 000000591 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-18 02:00:12.978 -07 000000592 INF: Z Motor: Entering MoveAbsStepped (DAC = 38685, sync = True, waitForSettling = False)
17-03-18 02:00:12.978 -07 000000592 INF: Z Motor: Moving to -0.177089 mm, started at -0.170593 mm, distance = -6.50 um
17-03-18 02:00:12.988 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:12.988 -07 000000592 INF: FPGA: Xmit ZDACW 38685\n [Z Motor]
17-03-18 02:00:12.988 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 02:00:12.998 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:12.998 -07 000000592 INF: FPGA: 'ZDACW 38685' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:00:12.998 -07 000000579 INF: FPGA: Recv YRDPOS 129482
17-03-18 02:00:13.008 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:00:13.008 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:00:13.008 -07 000000591 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:13.008 -07 000000591 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:00:13.008 -07 000000591 INF: Y Motor: Moving 1342 steps-19
17-03-18 02:00:13.018 -07 000000592 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:00:13.018 -07 000000579 INF: FPGA: Recv ZDACR 38685
17-03-18 02:00:13.028 -07 000000592 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:00:13.028 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:00:13.028 -07 000000592 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 02:00:13.207 -07 000000592 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:00:13.207 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:00:13.297 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 02:00:13.297 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:00:13.297 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:13.297 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 02:00:13.297 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:00:13.297 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:13.297 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:00:13.307 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:00:13.307 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-18 02:00:13.307 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:00:13.397 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 02:00:13.397 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:00:13.447 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:13.447 -07 000000462 INF: FPGA: Recv YRDPOS 131187
17-03-18 02:00:13.457 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:00:13.457 -07 000000591 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:13.457 -07 000000591 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 02:00:13.457 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-18 02:00:13.547 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 3.986717,
17-03-18 02:00:14.407 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:14.407 -07 000000579 INF: FPGA: Recv YRDPOS 131188
17-03-18 02:00:14.417 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:00:14.417 -07 000000591 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:14.437 -07 000000591 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:00:14.437 -07 000000591 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:00:14.437 -07 000000591 INF: Y Motor: Moved to 64.0566 after 1460 ms (table move)
17-03-18 02:00:14.437 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177089 mm (DAC = 38685)
17-03-18 02:00:14.437 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:14.447 -07 000000579 INF: FPGA: Recv ZSGSRD 36869
17-03-18 02:00:14.447 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 02:00:14.447 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:14.447 -07 000000569 INF: FPGA: Recv ZSGSRD 36850
17-03-18 02:00:14.457 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:00:14.457 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:14.457 -07 000000561 INF: FPGA: Recv ZSGSRD 36851
17-03-18 02:00:14.467 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:14.467 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:14.467 -07 000000591 INF: FPGA: Recv ZSGSRD 36857
17-03-18 02:00:14.477 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:14.477 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:14.477 -07 000000592 INF: FPGA: Recv ZSGSRD 36855
17-03-18 02:00:14.487 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:14.487 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:14.487 -07 000000561 INF: FPGA: Recv ZSGSRD 36856
17-03-18 02:00:14.497 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:14.497 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:14.497 -07 000000569 INF: FPGA: Recv ZSGSRD 36858
17-03-18 02:00:14.507 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:14.507 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:14.507 -07 000000592 INF: FPGA: Recv ZSGSRD 36850
17-03-18 02:00:14.517 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:14.517 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:14.517 -07 000000591 INF: FPGA: Recv ZSGSRD 36858
17-03-18 02:00:14.527 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:14.527 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:14.527 -07 000000591 INF: FPGA: Recv ZSGSRD 36856
17-03-18 02:00:14.537 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:14.537 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:00:14.537 -07 000000569 INF: FPGA: Recv ZPIEZORD 33125
17-03-18 02:00:14.547 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:14.547 -07 000000424 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.903 V. Piezo Error = -8.3 V.
17-03-18 02:00:14.547 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36856 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36856 (-176.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36850 (-176.2 uncal um), Max = 36869 (-176.3 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:00:14.547 -07 000000424 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36856, posNoise = 13, negNoise = 6
17-03-18 02:00:14.547 -07 000000424 INF: Z Motor: After move to -0.177089, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:00:14.547 -07 000000424 INF: Z Motor: Settle wait time = 1464 ms, measure time = 101 ms (allowed 150 ms), total time = 1565 ms
17-03-18 02:00:14.547 -07 000000424 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 02:00:14.597 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 02:00:14.597 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:00:14.597 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:00:14.597 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:00:14.597 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:00:14.597 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:00:14.597 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:00:14.597 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:00:14.597 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:00:14.597 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:00:14.607 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:00:14.607 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:00:14.617 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 02:00:14.617 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 02:00:14.617 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:00:14.657 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:00:14.957 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:00:14.957 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:00:14.957 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:00:14.967 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) start.
17-03-18 02:00:14.997 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:00:14.997 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 02:00:14.997 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:00:15.077 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:00:15.077 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:15.077 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:00:15.077 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:00:15.097 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:00:15.097 -07 000000579 INF: Autofocus start
17-03-18 02:00:15.097 -07 000000579 INF: MeasureProfile start
17-03-18 02:00:15.097 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:00:15.107 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:00:15.107 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:00:15.107 -07 000000579 INF: MeasureProfile done
17-03-18 02:00:15.107 -07 000000579 INF: X=-64  Z correction [um]=-0.4038377
17-03-18 02:00:15.107 -07 000000579 INF: Autofocus finished
17-03-18 02:00:15.307 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:00:15.307 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:00:15.307 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.177094114707877. ----------
17-03-18 02:00:15.307 -07 000000610 INF: Cycle	94	Tile	6	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:00:15.317 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37109, sync = True, waitForSettling = True)
17-03-18 02:00:15.317 -07 000000610 INF: Z Motor: Moving to -0.169874 mm, started at -0.177094 mm, distance = 7.22 um
17-03-18 02:00:15.317 -07 000000610 INF: FPGA: Xmit ZDACW 37109\n [Z Motor]
17-03-18 02:00:15.317 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 02:00:15.327 -07 000000610 INF: FPGA: 'ZDACW 37109' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:00:15.327 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:00:15.327 -07 000000579 INF: FPGA: Recv ZDACR 37109
17-03-18 02:00:15.337 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:15.337 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:00:15.487 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:15.487 -07 000000424 INF: FPGA: Recv ZSGSRD 35733
17-03-18 02:00:15.497 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:00:15.497 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:15.497 -07 000000569 INF: FPGA: Recv ZSGSRD 35737
17-03-18 02:00:15.507 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:15.507 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:15.507 -07 000000579 INF: FPGA: Recv ZSGSRD 35731
17-03-18 02:00:15.517 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:15.517 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:15.517 -07 000000561 INF: FPGA: Recv ZSGSRD 35731
17-03-18 02:00:15.527 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:15.527 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:15.527 -07 000000591 INF: FPGA: Recv ZSGSRD 35733
17-03-18 02:00:15.537 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:15.537 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:15.537 -07 000000592 INF: FPGA: Recv ZSGSRD 35734
17-03-18 02:00:15.547 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:15.547 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:15.547 -07 000000561 INF: FPGA: Recv ZSGSRD 35729
17-03-18 02:00:15.557 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:15.557 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:15.557 -07 000000592 INF: FPGA: Recv ZSGSRD 35732
17-03-18 02:00:15.567 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:15.567 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:15.567 -07 000000561 INF: FPGA: Recv ZSGSRD 35728
17-03-18 02:00:15.577 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:15.577 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:15.577 -07 000000424 INF: FPGA: Recv ZSGSRD 35734
17-03-18 02:00:15.587 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:15.587 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:00:15.587 -07 000000569 INF: FPGA: Recv ZPIEZORD 31642
17-03-18 02:00:15.597 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:15.597 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.662 V. Piezo Error = -9.0 V.
17-03-18 02:00:15.597 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35732 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35732 (-169.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35728 (-169.0 uncal um), Max = 35737 (-169.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:00:15.597 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35732, posNoise = 5, negNoise = 4
17-03-18 02:00:15.597 -07 000000610 INF: Z Motor: After move to -0.169874, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:00:15.597 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:00:15.597 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:00:15.597 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:00:15.597 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:00:15.597 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:00:15.597 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:00:15.597 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:00:15.597 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:00:15.597 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:00:15.597 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:00:15.597 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:00:15.607 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 02:00:15.607 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:00:15.607 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:00:15.607 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:00:15.607 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:00:15.607 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:00:15.617 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:00:15.617 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:00:15.617 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:00:15.617 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:00:15.617 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37286 150\n [Camera]
17-03-18 02:00:15.817 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:00:16.207 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:00:16.207 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:00:16.207 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:00:16.207 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:00:16.207 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 02:00:16.217 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:00:16.217 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:00:16.217 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:00:16.217 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:00:16.217 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 02:00:16.407 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37286 777
17-03-18 02:00:16.527 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:00:16.527 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:00:16.557 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:00:16.607 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:00:16.607 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:00:16.607 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:16.607 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:00:16.607 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:00:16.617 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 02:00:16.617 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:00:16.617 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:16.617 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:00:16.627 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 02:00:16.747 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:00:16.747 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:00:16.747 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:00:16.857 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:00:16.857 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:00:16.857 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:00:16.857 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:00:16.867 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:00:16.867 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:00:16.867 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:00:16.937 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 02:00:16.937 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:00:16.937 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37286 150' command took 2 ms to send, 1311 ms to get response, and 1315 ms overall
17-03-18 02:00:16.937 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:00:16.937 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.169873300260537. ------
17-03-18 02:00:16.937 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:00:16.937 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17637 mm
17-03-18 02:00:16.937 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:00:16.937 -07 000000592 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 02:00:16.937 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38527, sync = True, waitForSettling = False)
17-03-18 02:00:16.937 -07 000000579 INF: Z Motor: Moving to -0.176365 mm, started at -0.169873 mm, distance = -6.49 um
17-03-18 02:00:16.937 -07 000000592 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-18 02:00:16.947 -07 000000579 INF: FPGA: Xmit ZDACW 38527\n [Z Motor]
17-03-18 02:00:16.947 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:00:16.947 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-18 02:00:16.947 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 02:00:16.957 -07 000000579 INF: FPGA: 'ZDACW 38527' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:00:16.957 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:16.957 -07 000000424 INF: FPGA: Recv YRDPOS 131188
17-03-18 02:00:16.967 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:00:16.967 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 02:00:16.967 -07 000000592 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:16.967 -07 000000592 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:00:16.967 -07 000000592 INF: Y Motor: Moving 1338 steps-13
17-03-18 02:00:16.977 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:00:16.977 -07 000000424 INF: FPGA: Recv ZDACR 38527
17-03-18 02:00:16.987 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 02:00:16.987 -07 000000579 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 02:00:16.987 -07 000000592 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:00:17.167 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:00:17.167 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-18 02:00:17.257 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 02:00:17.257 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:00:17.257 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:17.257 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 02:00:17.257 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:00:17.257 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:17.267 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:00:17.267 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-18 02:00:17.267 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:00:17.277 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 02:00:17.356 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:00:17.356 -07 000000592 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 02:00:17.406 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:17.406 -07 000000437 INF: FPGA: Recv YRDPOS 132871
17-03-18 02:00:17.416 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:00:17.416 -07 000000592 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:17.416 -07 000000592 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:00:17.416 -07 000000592 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.836 mm, average velocity = 2.116 mm/sec
17-03-18 02:00:18.366 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:18.366 -07 000000561 INF: FPGA: Recv YRDPOS 132871
17-03-18 02:00:18.376 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:00:18.376 -07 000000592 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:18.396 -07 000000592 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:00:18.396 -07 000000592 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:00:18.396 -07 000000592 INF: Y Motor: Moved to 64.8784 after 1458 ms (table move)
17-03-18 02:00:18.406 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176365 mm (DAC = 38527)
17-03-18 02:00:18.406 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:18.406 -07 000000462 INF: FPGA: Recv ZSGSRD 36742
17-03-18 02:00:18.416 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:18.416 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:18.416 -07 000000444 INF: FPGA: Recv ZSGSRD 36742
17-03-18 02:00:18.426 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:18.426 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:18.426 -07 000000569 INF: FPGA: Recv ZSGSRD 36752
17-03-18 02:00:18.436 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:18.436 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:18.436 -07 000000444 INF: FPGA: Recv ZSGSRD 36748
17-03-18 02:00:18.446 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:18.446 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:18.446 -07 000000447 INF: FPGA: Recv ZSGSRD 36741
17-03-18 02:00:18.456 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:18.456 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:18.456 -07 000000512 INF: FPGA: Recv ZSGSRD 36747
17-03-18 02:00:18.466 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:18.466 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:18.466 -07 000000424 INF: FPGA: Recv ZSGSRD 36738
17-03-18 02:00:18.476 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:18.476 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:18.476 -07 000000447 INF: FPGA: Recv ZSGSRD 36742
17-03-18 02:00:18.486 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:18.486 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:18.486 -07 000000437 INF: FPGA: Recv ZSGSRD 36741
17-03-18 02:00:18.496 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:18.496 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:18.496 -07 000000444 INF: FPGA: Recv ZSGSRD 36746
17-03-18 02:00:18.506 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:18.506 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:00:18.506 -07 000000512 INF: FPGA: Recv ZPIEZORD 32921
17-03-18 02:00:18.516 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:18.516 -07 000000591 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.879 V. Piezo Error = -8.5 V.
17-03-18 02:00:18.516 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36744 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36742 (-175.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36738 (-175.4 uncal um), Max = 36752 (-175.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:00:18.516 -07 000000591 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36744, posNoise = 8, negNoise = 6
17-03-18 02:00:18.516 -07 000000591 INF: Z Motor: After move to -0.176365, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:00:18.516 -07 000000591 INF: Z Motor: Settle wait time = 1461 ms, measure time = 110 ms (allowed 150 ms), total time = 1571 ms
17-03-18 02:00:18.516 -07 000000591 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:00:18.556 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 02:00:18.556 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:00:18.556 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:00:18.556 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:00:18.556 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:00:18.556 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:00:18.556 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:00:18.556 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:00:18.556 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:00:18.556 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:00:18.566 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:00:18.566 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:00:18.576 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:00:18.576 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:00:18.576 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:00:18.626 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:00:18.906 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 4.024884,
17-03-18 02:00:18.926 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:00:18.926 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:00:18.926 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:00:18.926 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1094749800, 0x0, 559484976) start.
17-03-18 02:00:18.956 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:00:18.966 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 02:00:18.966 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:00:19.056 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1094749800, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:00:19.056 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:19.056 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:00:19.056 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:00:19.066 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:00:19.066 -07 000000608 INF: Autofocus start
17-03-18 02:00:19.066 -07 000000608 INF: MeasureProfile start
17-03-18 02:00:19.066 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:00:19.076 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:00:19.076 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:00:19.076 -07 000000608 INF: MeasureProfile done
17-03-18 02:00:19.076 -07 000000608 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 02:00:19.076 -07 000000608 INF: Autofocus finished
17-03-18 02:00:19.276 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:00:19.276 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:00:19.276 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.176374602948. ----------
17-03-18 02:00:19.276 -07 000000610 INF: Cycle	94	Tile	7	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:00:19.286 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37007, sync = True, waitForSettling = True)
17-03-18 02:00:19.286 -07 000000610 INF: Z Motor: Moving to -0.169407 mm, started at -0.176375 mm, distance = 6.97 um
17-03-18 02:00:19.286 -07 000000610 INF: FPGA: Xmit ZDACW 37007\n [Z Motor]
17-03-18 02:00:19.286 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:00:19.296 -07 000000610 INF: FPGA: 'ZDACW 37007' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:19.296 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:00:19.296 -07 000000592 INF: FPGA: Recv ZDACR 37007
17-03-18 02:00:19.306 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:19.306 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:00:19.456 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:19.456 -07 000000608 INF: FPGA: Recv ZSGSRD 35664
17-03-18 02:00:19.466 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:00:19.466 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:19.466 -07 000000579 INF: FPGA: Recv ZSGSRD 35661
17-03-18 02:00:19.476 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:19.476 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:19.476 -07 000000462 INF: FPGA: Recv ZSGSRD 35655
17-03-18 02:00:19.486 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:19.486 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:19.486 -07 000000592 INF: FPGA: Recv ZSGSRD 35659
17-03-18 02:00:19.496 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:19.496 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:19.496 -07 000000608 INF: FPGA: Recv ZSGSRD 35664
17-03-18 02:00:19.506 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:19.506 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:19.506 -07 000000579 INF: FPGA: Recv ZSGSRD 35668
17-03-18 02:00:19.516 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:19.516 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:19.516 -07 000000437 INF: FPGA: Recv ZSGSRD 35656
17-03-18 02:00:19.526 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:19.526 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:19.526 -07 000000569 INF: FPGA: Recv ZSGSRD 35658
17-03-18 02:00:19.536 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:19.536 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:19.536 -07 000000608 INF: FPGA: Recv ZSGSRD 35665
17-03-18 02:00:19.546 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:19.546 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:19.546 -07 000000462 INF: FPGA: Recv ZSGSRD 35662
17-03-18 02:00:19.556 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:19.556 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:00:19.556 -07 000000579 INF: FPGA: Recv ZPIEZORD 31479
17-03-18 02:00:19.566 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:19.566 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.647 V. Piezo Error = -9.2 V.
17-03-18 02:00:19.566 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35661 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35662 (-168.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35655 (-168.5 uncal um), Max = 35668 (-168.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:00:19.566 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35661, posNoise = 7, negNoise = 6
17-03-18 02:00:19.566 -07 000000610 INF: Z Motor: After move to -0.169407, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:00:19.566 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:00:19.566 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:00:19.566 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:00:19.566 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:00:19.566 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:00:19.566 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:00:19.566 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:00:19.566 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:00:19.566 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:00:19.566 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:00:19.566 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:00:19.566 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:00:19.566 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:00:19.566 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:00:19.566 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:00:19.576 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:00:19.576 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:00:19.576 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:00:19.576 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:00:19.576 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:00:19.576 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:00:19.586 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37184 150\n [Camera]
17-03-18 02:00:19.786 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:00:20.176 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:00:20.176 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:00:20.176 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:00:20.176 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:00:20.176 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 02:00:20.176 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:00:20.176 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:00:20.176 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:00:20.176 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:00:20.176 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:00:20.366 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37184 777
17-03-18 02:00:20.516 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:00:20.576 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 02:00:20.576 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:00:20.576 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:20.576 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:00:20.576 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:00:20.576 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:20.576 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:00:20.576 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:00:20.586 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:00:20.586 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 02:00:20.706 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:00:20.706 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:00:20.706 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:00:20.816 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:00:20.816 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:00:20.816 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:00:20.826 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:00:20.826 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:00:20.826 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:00:20.826 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:00:20.896 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 02:00:20.896 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:00:20.896 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37184 150' command took 2 ms to send, 1308 ms to get response, and 1314 ms overall
17-03-18 02:00:20.906 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:00:20.906 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.169417181198472. ------
17-03-18 02:00:20.906 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:00:20.906 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17603 mm
17-03-18 02:00:20.906 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:00:20.906 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:00:20.906 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 02:00:20.906 -07 000000591 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 02:00:20.906 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38454, sync = True, waitForSettling = False)
17-03-18 02:00:20.906 -07 000000608 INF: Z Motor: Moving to -0.176031 mm, started at -0.169417 mm, distance = -6.61 um
17-03-18 02:00:20.916 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:00:20.916 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:20.916 -07 000000592 INF: FPGA: Recv YRDPOS 132871
17-03-18 02:00:20.926 -07 000000608 INF: FPGA: Xmit ZDACW 38454\n [Z Motor]
17-03-18 02:00:20.926 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:00:20.926 -07 000000591 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:20.926 -07 000000591 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:00:20.926 -07 000000591 INF: Y Motor: Moving 1351 steps-29
17-03-18 02:00:20.926 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:00:20.936 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:00:20.936 -07 000000608 INF: FPGA: 'ZDACW 38454' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:00:20.946 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:00:20.956 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:00:20.956 -07 000000461 INF: FPGA: Recv ZDACR 38454
17-03-18 02:00:20.966 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:00:20.966 -07 000000608 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 02:00:21.136 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:00:21.136 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:00:21.216 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 02:00:21.216 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:00:21.216 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:00:21.216 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:21.216 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:00:21.226 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:21.226 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:00:21.226 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-18 02:00:21.226 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:00:21.236 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:00:21.316 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 02:00:21.316 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-18 02:00:21.366 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:21.366 -07 000000462 INF: FPGA: Recv YRDPOS 134581
17-03-18 02:00:21.376 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:00:21.376 -07 000000591 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:21.376 -07 000000591 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:00:21.376 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-18 02:00:21.525 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:00:21.525 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:00:22.325 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:22.325 -07 000000462 INF: FPGA: Recv YRDPOS 134581
17-03-18 02:00:22.335 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:00:22.335 -07 000000591 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:22.365 -07 000000591 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:00:22.365 -07 000000591 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:00:22.365 -07 000000591 INF: Y Motor: Moved to 65.7134 after 1454 ms (table move)
17-03-18 02:00:22.365 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176031 mm (DAC = 38454)
17-03-18 02:00:22.365 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:22.365 -07 000000561 INF: FPGA: Recv ZSGSRD 36702
17-03-18 02:00:22.375 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:00:22.375 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:22.375 -07 000000502 INF: FPGA: Recv ZSGSRD 36697
17-03-18 02:00:22.385 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:22.385 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:22.385 -07 000000462 INF: FPGA: Recv ZSGSRD 36689
17-03-18 02:00:22.395 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:22.395 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:22.395 -07 000000461 INF: FPGA: Recv ZSGSRD 36688
17-03-18 02:00:22.405 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:22.405 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:22.405 -07 000000444 INF: FPGA: Recv ZSGSRD 36684
17-03-18 02:00:22.415 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:22.415 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:22.415 -07 000000579 INF: FPGA: Recv ZSGSRD 36692
17-03-18 02:00:22.425 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:22.425 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:22.425 -07 000000608 INF: FPGA: Recv ZSGSRD 36688
17-03-18 02:00:22.435 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:00:22.435 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:22.435 -07 000000424 INF: FPGA: Recv ZSGSRD 36690
17-03-18 02:00:22.445 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:22.445 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:22.445 -07 000000444 INF: FPGA: Recv ZSGSRD 36691
17-03-18 02:00:22.455 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:22.455 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:22.455 -07 000000611 INF: FPGA: Recv ZSGSRD 36693
17-03-18 02:00:22.465 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:22.465 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:00:22.465 -07 000000502 INF: FPGA: Recv ZPIEZORD 32893
17-03-18 02:00:22.475 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:22.475 -07 000000512 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.868 V. Piezo Error = -8.4 V.
17-03-18 02:00:22.475 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36691 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36690 (-175.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36684 (-175.1 uncal um), Max = 36702 (-175.2 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:00:22.475 -07 000000512 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36691, posNoise = 11, negNoise = 7
17-03-18 02:00:22.475 -07 000000512 INF: Z Motor: After move to -0.176031, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:00:22.475 -07 000000512 INF: Z Motor: Settle wait time = 1457 ms, measure time = 105 ms (allowed 150 ms), total time = 1562 ms
17-03-18 02:00:22.475 -07 000000512 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 02:00:22.525 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 02:00:22.525 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:00:22.525 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:00:22.525 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:00:22.525 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:00:22.525 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:00:22.525 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:00:22.525 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:00:22.525 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:00:22.525 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:00:22.535 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:00:22.535 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:00:22.545 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 02:00:22.545 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:00:22.545 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:00:22.585 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:00:22.885 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:00:22.885 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:00:22.885 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:00:22.895 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1094749800, 0x0, 559484976) start.
17-03-18 02:00:22.925 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:00:22.925 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 02:00:22.925 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 02:00:23.015 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1094749800, 0x0, 559484976) end. Duration was 124 ms.
17-03-18 02:00:23.015 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:23.015 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:00:23.015 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 02:00:23.125 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:00:23.125 -07 000000424 INF: Autofocus start
17-03-18 02:00:23.125 -07 000000424 INF: MeasureProfile start
17-03-18 02:00:23.125 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:00:23.135 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:00:23.135 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:00:23.135 -07 000000424 INF: MeasureProfile done
17-03-18 02:00:23.135 -07 000000424 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:00:23.135 -07 000000424 INF: Autofocus finished
17-03-18 02:00:23.335 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:00:23.335 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:00:23.345 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.176034119704486. ----------
17-03-18 02:00:23.345 -07 000000610 INF: Cycle	94	Tile	8	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:00:23.355 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36968, sync = True, waitForSettling = True)
17-03-18 02:00:23.355 -07 000000610 INF: Z Motor: Moving to -0.169229 mm, started at -0.176034 mm, distance = 6.81 um
17-03-18 02:00:23.355 -07 000000610 INF: FPGA: Xmit ZDACW 36968\n [Z Motor]
17-03-18 02:00:23.355 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:00:23.365 -07 000000610 INF: FPGA: 'ZDACW 36968' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:23.365 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:00:23.365 -07 000000591 INF: FPGA: Recv ZDACR 36968
17-03-18 02:00:23.375 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:23.375 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:00:23.525 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:23.525 -07 000000611 INF: FPGA: Recv ZSGSRD 35633
17-03-18 02:00:23.535 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:00:23.535 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:23.535 -07 000000561 INF: FPGA: Recv ZSGSRD 35637
17-03-18 02:00:23.545 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:23.545 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:23.545 -07 000000585 INF: FPGA: Recv ZSGSRD 35630
17-03-18 02:00:23.555 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:23.555 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:23.555 -07 000000424 INF: FPGA: Recv ZSGSRD 35630
17-03-18 02:00:23.565 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:23.565 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:23.565 -07 000000611 INF: FPGA: Recv ZSGSRD 35636
17-03-18 02:00:23.575 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:23.575 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:23.575 -07 000000444 INF: FPGA: Recv ZSGSRD 35633
17-03-18 02:00:23.585 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:23.585 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:23.585 -07 000000561 INF: FPGA: Recv ZSGSRD 35632
17-03-18 02:00:23.595 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:23.595 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:23.595 -07 000000592 INF: FPGA: Recv ZSGSRD 35634
17-03-18 02:00:23.605 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:23.605 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:23.605 -07 000000512 INF: FPGA: Recv ZSGSRD 35631
17-03-18 02:00:23.615 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:23.615 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:23.615 -07 000000444 INF: FPGA: Recv ZSGSRD 35635
17-03-18 02:00:23.625 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:23.625 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:00:23.625 -07 000000512 INF: FPGA: Recv ZPIEZORD 31477
17-03-18 02:00:23.635 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:23.635 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.641 V. Piezo Error = -9.2 V.
17-03-18 02:00:23.635 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35633 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35633 (-168.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35630 (-168.3 uncal um), Max = 35637 (-168.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:00:23.635 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35633, posNoise = 4, negNoise = 3
17-03-18 02:00:23.635 -07 000000610 INF: Z Motor: After move to -0.169229, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:00:23.635 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:00:23.635 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:00:23.635 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:00:23.635 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:00:23.635 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:00:23.635 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:00:23.635 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:00:23.635 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:00:23.635 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:00:23.635 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 02:00:23.635 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:00:23.635 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:00:23.635 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:00:23.645 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:00:23.645 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:00:23.645 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:00:23.645 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:00:23.655 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:00:23.655 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:00:23.655 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:00:23.655 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:00:23.655 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37145 150\n [Camera]
17-03-18 02:00:23.855 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:00:24.245 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:00:24.245 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:00:24.245 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:00:24.245 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:00:24.245 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 02:00:24.245 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:00:24.245 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:00:24.255 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:00:24.255 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:00:24.255 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:00:24.265 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 4.005817,
17-03-18 02:00:24.435 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37145 777
17-03-18 02:00:24.585 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:00:24.645 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 02:00:24.645 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:00:24.645 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:24.645 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 02:00:24.645 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:00:24.645 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:24.755 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 109 ms.
17-03-18 02:00:24.755 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 508 ms.
17-03-18 02:00:24.755 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 109 ms.
17-03-18 02:00:24.765 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-18 02:00:24.775 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:00:24.775 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:00:24.775 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:00:24.785 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:00:24.785 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:00:24.785 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:00:24.785 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:00:24.785 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:00:24.785 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:00:24.785 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:00:24.965 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 02:00:24.965 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:00:24.965 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37145 150' command took 2 ms to send, 1309 ms to get response, and 1315 ms overall
17-03-18 02:00:24.975 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:00:24.975 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.169237303258503. ------
17-03-18 02:00:24.975 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:00:24.975 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17559 mm
17-03-18 02:00:24.975 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:00:24.975 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 02:00:24.985 -07 000000444 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 02:00:24.985 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:24.985 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38358, sync = True, waitForSettling = False)
17-03-18 02:00:24.985 -07 000000462 INF: Z Motor: Moving to -0.175592 mm, started at -0.169237 mm, distance = -6.35 um
17-03-18 02:00:24.995 -07 000000462 INF: FPGA: Xmit ZDACW 38358\n [Z Motor]
17-03-18 02:00:25.185 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:00:25.185 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:00:25.185 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:25.185 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:00:25.185 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:00:25.185 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:25.195 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:00:25.195 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:00:25.195 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 02:00:25.195 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 02:00:25.205 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:00:25.205 -07 000000561 INF: FPGA: Recv YRDPOS 134582
17-03-18 02:00:25.205 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 221 ms to get response, and 228 ms overall
17-03-18 02:00:25.205 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:00:25.205 -07 000000462 INF: FPGA: 'ZDACW 38358' command took 0 ms to send, 202 ms to get response, and 221 ms overall
17-03-18 02:00:25.205 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:00:25.205 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 212 ms to get response, and 221 ms overall
17-03-18 02:00:25.205 -07 000000444 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:25.205 -07 000000561 INF: FPGA: Recv ZDACR 38358
17-03-18 02:00:25.205 -07 000000444 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:00:25.215 -07 000000444 INF: Y Motor: Moving 1342 steps-19
17-03-18 02:00:25.215 -07 000000592 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:00:25.215 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:00:25.215 -07 000000462 INF: Z Motor: MoveAbsStepped took 229 ms (did NOT wait for settling yet))
17-03-18 02:00:25.225 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:00:25.415 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:00:25.415 -07 000000592 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 209 ms overall
17-03-18 02:00:25.595 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 02:00:25.595 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-18 02:00:25.645 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:25.645 -07 000000462 INF: FPGA: Recv YRDPOS 136271
17-03-18 02:00:25.655 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:00:25.655 -07 000000444 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:25.655 -07 000000444 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:00:25.655 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.163 mm/sec
17-03-18 02:00:26.524 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:00:26.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:00:26.604 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:26.604 -07 000000561 INF: FPGA: Recv YRDPOS 136271
17-03-18 02:00:26.614 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:26.614 -07 000000444 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:26.634 -07 000000444 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:00:26.634 -07 000000444 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:00:26.634 -07 000000444 INF: Y Motor: Moved to 66.5386 after 1657 ms (table move)
17-03-18 02:00:26.644 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175592 mm (DAC = 38358)
17-03-18 02:00:26.644 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:26.644 -07 000000502 INF: FPGA: Recv ZSGSRD 36625
17-03-18 02:00:26.654 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:00:26.654 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:26.654 -07 000000579 INF: FPGA: Recv ZSGSRD 36622
17-03-18 02:00:26.664 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:26.664 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:26.664 -07 000000592 INF: FPGA: Recv ZSGSRD 36623
17-03-18 02:00:26.674 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:26.674 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:26.674 -07 000000592 INF: FPGA: Recv ZSGSRD 36623
17-03-18 02:00:26.684 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:00:26.684 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:26.684 -07 000000462 INF: FPGA: Recv ZSGSRD 36623
17-03-18 02:00:26.694 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:26.694 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:26.694 -07 000000611 INF: FPGA: Recv ZSGSRD 36625
17-03-18 02:00:26.704 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:26.704 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:26.704 -07 000000579 INF: FPGA: Recv ZSGSRD 36615
17-03-18 02:00:26.714 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:26.714 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:26.714 -07 000000592 INF: FPGA: Recv ZSGSRD 36622
17-03-18 02:00:26.724 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:26.724 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:26.724 -07 000000502 INF: FPGA: Recv ZSGSRD 36624
17-03-18 02:00:26.734 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:26.734 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:26.734 -07 000000561 INF: FPGA: Recv ZSGSRD 36623
17-03-18 02:00:26.744 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:26.744 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:00:26.744 -07 000000591 INF: FPGA: Recv ZPIEZORD 32765
17-03-18 02:00:26.754 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:26.754 -07 000000512 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.853 V. Piezo Error = -8.5 V.
17-03-18 02:00:26.754 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.6 um, Read 10 ADC samples: Avg = 36622 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36623 (-174.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36615 (-174.7 uncal um), Max = 36625 (-174.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:00:26.754 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36622, posNoise = 3, negNoise = 7
17-03-18 02:00:26.754 -07 000000512 INF: Z Motor: After move to -0.175592, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:00:26.754 -07 000000512 INF: Z Motor: Settle wait time = 1660 ms, measure time = 109 ms (allowed 150 ms), total time = 1769 ms
17-03-18 02:00:26.754 -07 000000512 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:00:26.804 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1825 ms
17-03-18 02:00:26.804 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:00:26.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:00:26.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:00:26.804 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:00:26.804 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:00:26.804 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:00:26.804 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:00:26.804 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:00:26.804 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:00:26.814 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:00:26.814 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:00:26.824 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 02:00:26.824 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:00:26.824 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:00:26.874 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:00:27.174 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:00:27.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:00:27.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:00:27.174 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1094749800, 0x0, 559484976) start.
17-03-18 02:00:27.204 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:00:27.214 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 02:00:27.214 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:00:27.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1094749800, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:00:27.284 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:27.284 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:00:27.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:00:27.314 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:00:27.314 -07 000000512 INF: Autofocus start
17-03-18 02:00:27.314 -07 000000512 INF: MeasureProfile start
17-03-18 02:00:27.314 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:00:27.324 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:00:27.324 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:00:27.334 -07 000000512 INF: MeasureProfile done
17-03-18 02:00:27.334 -07 000000512 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:00:27.334 -07 000000512 INF: Autofocus finished
17-03-18 02:00:27.524 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:00:27.524 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:00:27.524 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.175590849066705. ----------
17-03-18 02:00:27.524 -07 000000610 INF: Cycle	94	Tile	9	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:00:27.534 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36873, sync = True, waitForSettling = True)
17-03-18 02:00:27.534 -07 000000610 INF: Z Motor: Moving to -0.168794 mm, started at -0.175591 mm, distance = 6.80 um
17-03-18 02:00:27.534 -07 000000610 INF: FPGA: Xmit ZDACW 36873\n [Z Motor]
17-03-18 02:00:27.534 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:00:27.544 -07 000000610 INF: FPGA: 'ZDACW 36873' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:00:27.544 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:00:27.544 -07 000000462 INF: FPGA: Recv ZDACR 36873
17-03-18 02:00:27.554 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:27.554 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:00:27.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:27.704 -07 000000447 INF: FPGA: Recv ZSGSRD 35565
17-03-18 02:00:27.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:00:27.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:27.714 -07 000000461 INF: FPGA: Recv ZSGSRD 35564
17-03-18 02:00:27.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:27.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:27.724 -07 000000629 INF: FPGA: Recv ZSGSRD 35561
17-03-18 02:00:27.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:27.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:27.734 -07 000000424 INF: FPGA: Recv ZSGSRD 35565
17-03-18 02:00:27.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:27.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:27.744 -07 000000447 INF: FPGA: Recv ZSGSRD 35560
17-03-18 02:00:27.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:27.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:27.754 -07 000000461 INF: FPGA: Recv ZSGSRD 35562
17-03-18 02:00:27.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:27.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:27.764 -07 000000592 INF: FPGA: Recv ZSGSRD 35568
17-03-18 02:00:27.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:27.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:27.774 -07 000000579 INF: FPGA: Recv ZSGSRD 35565
17-03-18 02:00:27.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:27.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:27.784 -07 000000512 INF: FPGA: Recv ZSGSRD 35567
17-03-18 02:00:27.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:27.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:27.794 -07 000000561 INF: FPGA: Recv ZSGSRD 35567
17-03-18 02:00:27.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:27.804 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:00:27.804 -07 000000629 INF: FPGA: Recv ZPIEZORD 31405
17-03-18 02:00:27.814 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:27.814 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.626 V. Piezo Error = -9.2 V.
17-03-18 02:00:27.814 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35564 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35565 (-167.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35560 (-167.9 uncal um), Max = 35568 (-167.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:00:27.814 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35564, posNoise = 4, negNoise = 4
17-03-18 02:00:27.814 -07 000000610 INF: Z Motor: After move to -0.168794, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:00:27.814 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:00:27.814 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:00:27.814 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:00:27.814 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:00:27.814 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:00:27.814 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:00:27.814 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:00:27.814 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:00:27.814 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:00:27.814 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 02:00:27.814 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:00:27.814 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-18 02:00:27.814 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:00:27.824 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:00:27.824 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:00:27.824 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:00:27.824 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:00:27.834 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:00:27.834 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:00:27.834 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:00:27.834 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:00:27.834 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37050 150\n [Camera]
17-03-18 02:00:28.034 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:00:28.424 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:00:28.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:00:28.424 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:00:28.424 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:00:28.424 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 02:00:28.434 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:00:28.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:00:28.434 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:00:28.434 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:00:28.434 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 02:00:28.624 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37050 777
17-03-18 02:00:28.764 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:00:28.834 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:00:28.834 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:00:28.834 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:28.834 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:00:28.834 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:00:28.834 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:28.834 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:00:28.834 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:00:28.834 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:00:28.844 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:00:28.964 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:00:28.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:00:28.964 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:00:28.964 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:00:28.964 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:00:28.964 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:00:28.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:00:28.964 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:00:28.964 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:00:28.964 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:00:29.144 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 02:00:29.154 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:00:29.154 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37050 150' command took 2 ms to send, 1310 ms to get response, and 1315 ms overall
17-03-18 02:00:29.154 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:00:29.154 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.168794032620722. ------
17-03-18 02:00:29.154 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:00:29.154 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17566 mm
17-03-18 02:00:29.154 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:00:29.154 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 02:00:29.154 -07 000000444 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 02:00:29.164 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:29.164 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38374, sync = True, waitForSettling = False)
17-03-18 02:00:29.164 -07 000000512 INF: Z Motor: Moving to -0.175665 mm, started at -0.168794 mm, distance = -6.87 um
17-03-18 02:00:29.174 -07 000000512 INF: FPGA: Xmit ZDACW 38374\n [Z Motor]
17-03-18 02:00:29.354 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 02:00:29.354 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:00:29.354 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:29.354 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:00:29.354 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:00:29.354 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:29.354 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:00:29.364 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:00:29.364 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:00:29.364 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:00:29.374 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:00:29.374 -07 000000447 INF: FPGA: Recv YRDPOS 136271
17-03-18 02:00:29.374 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 02:00:29.374 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 206 ms to get response, and 214 ms overall
17-03-18 02:00:29.374 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 214 ms to get response, and 220 ms overall
17-03-18 02:00:29.374 -07 000000512 INF: FPGA: 'ZDACW 38374' command took 0 ms to send, 196 ms to get response, and 214 ms overall
17-03-18 02:00:29.374 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:00:29.374 -07 000000444 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:29.374 -07 000000444 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:00:29.374 -07 000000444 INF: Y Motor: Moving 1350 steps-29
17-03-18 02:00:29.384 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:00:29.394 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:00:29.394 -07 000000592 INF: FPGA: Recv ZDACR 38374
17-03-18 02:00:29.404 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:00:29.404 -07 000000512 INF: Z Motor: MoveAbsStepped took 237 ms (did NOT wait for settling yet))
17-03-18 02:00:29.584 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:00:29.584 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 200 ms to get response, and 202 ms overall
17-03-18 02:00:29.684 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 4.016692,
17-03-18 02:00:29.764 -07 000000592 INF: FPGA: Recv YMVTILE
17-03-18 02:00:29.764 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 382 ms overall
17-03-18 02:00:29.804 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:29.804 -07 000000512 INF: FPGA: Recv YRDPOS 137977
17-03-18 02:00:29.814 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:00:29.814 -07 000000444 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:29.814 -07 000000444 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 02:00:29.814 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.844 mm, average velocity = 2.210 mm/sec
17-03-18 02:00:30.763 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:30.763 -07 000000611 INF: FPGA: Recv YRDPOS 137977
17-03-18 02:00:30.773 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:00:30.773 -07 000000444 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:30.793 -07 000000444 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:00:30.793 -07 000000444 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:00:30.793 -07 000000444 INF: Y Motor: Moved to 67.3716 after 1638 ms (table move)
17-03-18 02:00:30.803 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175665 mm (DAC = 38374)
17-03-18 02:00:30.803 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:30.803 -07 000000512 INF: FPGA: Recv ZSGSRD 36640
17-03-18 02:00:30.813 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:00:30.813 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:30.813 -07 000000512 INF: FPGA: Recv ZSGSRD 36642
17-03-18 02:00:30.823 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:30.823 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:30.823 -07 000000444 INF: FPGA: Recv ZSGSRD 36638
17-03-18 02:00:30.833 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:30.833 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:30.833 -07 000000611 INF: FPGA: Recv ZSGSRD 36630
17-03-18 02:00:30.843 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:30.843 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:30.843 -07 000000444 INF: FPGA: Recv ZSGSRD 36635
17-03-18 02:00:30.853 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:30.853 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:30.853 -07 000000611 INF: FPGA: Recv ZSGSRD 36635
17-03-18 02:00:30.863 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:30.863 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:30.863 -07 000000447 INF: FPGA: Recv ZSGSRD 36631
17-03-18 02:00:30.873 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:30.873 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:30.873 -07 000000611 INF: FPGA: Recv ZSGSRD 36639
17-03-18 02:00:30.883 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:30.883 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:30.883 -07 000000592 INF: FPGA: Recv ZSGSRD 36638
17-03-18 02:00:30.893 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:30.893 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:30.893 -07 000000592 INF: FPGA: Recv ZSGSRD 36634
17-03-18 02:00:30.903 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:30.903 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:00:30.903 -07 000000592 INF: FPGA: Recv ZPIEZORD 32851
17-03-18 02:00:30.913 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:30.913 -07 000000591 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.855 V. Piezo Error = -8.4 V.
17-03-18 02:00:30.913 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36636 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36636 (-174.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36630 (-174.8 uncal um), Max = 36642 (-174.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:00:30.913 -07 000000591 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36636, posNoise = 6, negNoise = 6
17-03-18 02:00:30.913 -07 000000591 INF: Z Motor: After move to -0.175665, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:00:30.913 -07 000000591 INF: Z Motor: Settle wait time = 1638 ms, measure time = 110 ms (allowed 150 ms), total time = 1748 ms
17-03-18 02:00:30.913 -07 000000591 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:00:30.953 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1793 ms
17-03-18 02:00:30.953 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:00:30.953 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:00:30.953 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:00:30.953 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:00:30.953 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:00:30.953 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:00:30.953 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:00:30.953 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:00:30.953 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:00:30.963 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:00:30.963 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:00:30.973 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:00:30.973 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:00:30.973 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:00:31.023 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:00:31.313 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:00:31.323 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:00:31.323 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:00:31.323 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1118236488, 0x0, 559484976) start.
17-03-18 02:00:31.363 -07 000000447 INF: FPGA: Recv @CAMSNAP 382
17-03-18 02:00:31.363 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 02:00:31.363 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 382 ms to get response, and 387 ms overall
17-03-18 02:00:31.433 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1118236488, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:00:31.433 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:31.443 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:00:31.443 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:00:31.463 -07 000000591 INF: Autofocus start
17-03-18 02:00:31.463 -07 000000591 INF: MeasureProfile start
17-03-18 02:00:31.463 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:00:31.463 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:00:31.473 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:00:31.473 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:00:31.473 -07 000000591 INF: MeasureProfile done
17-03-18 02:00:31.473 -07 000000591 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:00:31.473 -07 000000591 INF: Autofocus finished
17-03-18 02:00:31.523 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:00:31.523 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:00:31.673 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:00:31.673 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:00:31.673 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.175680788036689. ----------
17-03-18 02:00:31.673 -07 000000610 INF: Cycle	94	Tile	10	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:00:31.683 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36871, sync = True, waitForSettling = True)
17-03-18 02:00:31.683 -07 000000610 INF: Z Motor: Moving to -0.168785 mm, started at -0.175681 mm, distance = 6.90 um
17-03-18 02:00:31.683 -07 000000610 INF: FPGA: Xmit ZDACW 36871\n [Z Motor]
17-03-18 02:00:31.683 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 02:00:31.693 -07 000000610 INF: FPGA: 'ZDACW 36871' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:31.693 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:00:31.693 -07 000000591 INF: FPGA: Recv ZDACR 36871
17-03-18 02:00:31.703 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:31.703 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:00:31.853 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:31.853 -07 000000608 INF: FPGA: Recv ZSGSRD 35567
17-03-18 02:00:31.863 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:00:31.863 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:31.863 -07 000000512 INF: FPGA: Recv ZSGSRD 35569
17-03-18 02:00:31.873 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:31.873 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:31.873 -07 000000437 INF: FPGA: Recv ZSGSRD 35557
17-03-18 02:00:31.883 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:31.883 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:31.883 -07 000000591 INF: FPGA: Recv ZSGSRD 35563
17-03-18 02:00:31.893 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:31.893 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:31.893 -07 000000444 INF: FPGA: Recv ZSGSRD 35567
17-03-18 02:00:31.903 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:31.903 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:31.903 -07 000000611 INF: FPGA: Recv ZSGSRD 35562
17-03-18 02:00:31.913 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:00:31.913 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:31.913 -07 000000437 INF: FPGA: Recv ZSGSRD 35568
17-03-18 02:00:31.923 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:31.923 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:31.923 -07 000000444 INF: FPGA: Recv ZSGSRD 35561
17-03-18 02:00:31.933 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:31.933 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:31.933 -07 000000591 INF: FPGA: Recv ZSGSRD 35565
17-03-18 02:00:31.943 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:31.943 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:31.943 -07 000000447 INF: FPGA: Recv ZSGSRD 35559
17-03-18 02:00:31.953 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:31.953 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:00:31.953 -07 000000592 INF: FPGA: Recv ZPIEZORD 31437
17-03-18 02:00:31.963 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:31.963 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.626 V. Piezo Error = -9.1 V.
17-03-18 02:00:31.963 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35564 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35564 (-167.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35557 (-167.9 uncal um), Max = 35569 (-168.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:00:31.963 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35564, posNoise = 5, negNoise = 7
17-03-18 02:00:31.963 -07 000000610 INF: Z Motor: After move to -0.168785, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:00:31.963 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:00:31.963 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:00:31.963 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:00:31.963 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:00:31.963 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:00:31.963 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:00:31.963 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:00:31.963 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:00:31.963 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:00:31.963 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:00:31.963 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:00:31.963 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:00:31.963 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:00:31.973 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:00:31.973 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:00:31.973 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:00:31.973 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:00:31.983 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:00:31.983 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:00:31.983 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:00:31.983 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:00:31.983 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 37048 150\n [Camera]
17-03-18 02:00:32.183 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:00:32.573 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:00:32.573 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:00:32.573 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:00:32.573 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:00:32.573 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:00:32.583 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:00:32.583 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:00:32.583 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:00:32.583 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:00:32.583 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:00:32.763 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37048 777
17-03-18 02:00:32.913 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:00:32.973 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:00:32.973 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:00:32.973 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:32.983 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:00:32.983 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:00:32.983 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:32.983 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:00:32.983 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:00:32.983 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:00:32.993 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:00:33.103 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:00:33.103 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:00:33.103 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:00:33.103 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:00:33.103 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 02:00:33.113 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:00:33.113 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:00:33.113 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:00:33.113 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:00:33.113 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 02:00:33.293 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 02:00:33.293 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:00:33.303 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 37048 150' command took 2 ms to send, 1309 ms to get response, and 1314 ms overall
17-03-18 02:00:33.303 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:00:33.303 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.168794032620722. ------
17-03-18 02:00:33.303 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:00:33.303 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17504 mm
17-03-18 02:00:33.303 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:00:33.303 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 02:00:33.303 -07 000000608 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 02:00:33.303 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 38238, sync = True, waitForSettling = False)
17-03-18 02:00:33.303 -07 000000444 INF: Z Motor: Moving to -0.175042 mm, started at -0.168794 mm, distance = -6.25 um
17-03-18 02:00:33.313 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:00:33.313 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:00:33.313 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:33.313 -07 000000569 INF: FPGA: Recv YRDPOS 137977
17-03-18 02:00:33.323 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:00:33.323 -07 000000608 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:33.323 -07 000000608 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:00:33.323 -07 000000608 INF: Y Motor: Moving 1346 steps-23
17-03-18 02:00:33.333 -07 000000444 INF: FPGA: Xmit ZDACW 38238\n [Z Motor]
17-03-18 02:00:33.333 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:00:33.343 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:00:33.343 -07 000000444 INF: FPGA: 'ZDACW 38238' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 02:00:33.353 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:00:33.363 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:00:33.363 -07 000000569 INF: FPGA: Recv ZDACR 38238
17-03-18 02:00:33.373 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:00:33.373 -07 000000444 INF: Z Motor: MoveAbsStepped took 60 ms (did NOT wait for settling yet))
17-03-18 02:00:33.503 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 02:00:33.503 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:00:33.503 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:33.513 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 02:00:33.513 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:00:33.513 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:33.513 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:00:33.513 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 02:00:33.513 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:00:33.523 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:00:33.543 -07 000000592 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:00:33.543 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 235 ms overall
17-03-18 02:00:33.723 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 02:00:33.723 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 407 ms overall
17-03-18 02:00:33.773 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:33.773 -07 000000592 INF: FPGA: Recv YRDPOS 139683
17-03-18 02:00:33.783 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:00:33.783 -07 000000608 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:33.783 -07 000000608 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 02:00:33.783 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.841 mm, average velocity = 2.066 mm/sec
17-03-18 02:00:34.732 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:34.732 -07 000000462 INF: FPGA: Recv YRDPOS 139683
17-03-18 02:00:34.742 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:00:34.742 -07 000000608 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:34.762 -07 000000608 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:00:34.762 -07 000000608 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:00:34.762 -07 000000608 INF: Y Motor: Moved to 68.2046 after 1458 ms (table move)
17-03-18 02:00:34.772 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175042 mm (DAC = 38238)
17-03-18 02:00:34.772 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:34.772 -07 000000512 INF: FPGA: Recv ZSGSRD 36535
17-03-18 02:00:34.782 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:00:34.782 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:34.782 -07 000000608 INF: FPGA: Recv ZSGSRD 36540
17-03-18 02:00:34.792 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:34.792 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:34.792 -07 000000569 INF: FPGA: Recv ZSGSRD 36539
17-03-18 02:00:34.802 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:34.802 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:34.802 -07 000000608 INF: FPGA: Recv ZSGSRD 36534
17-03-18 02:00:34.812 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:34.812 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:34.812 -07 000000512 INF: FPGA: Recv ZSGSRD 36540
17-03-18 02:00:34.822 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:34.822 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:34.822 -07 000000462 INF: FPGA: Recv ZSGSRD 36533
17-03-18 02:00:34.832 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:34.832 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:34.832 -07 000000592 INF: FPGA: Recv ZSGSRD 36535
17-03-18 02:00:34.842 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:34.842 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:34.842 -07 000000512 INF: FPGA: Recv ZSGSRD 36541
17-03-18 02:00:34.852 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:34.852 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:34.852 -07 000000608 INF: FPGA: Recv ZSGSRD 36544
17-03-18 02:00:34.862 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:34.862 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:34.862 -07 000000608 INF: FPGA: Recv ZSGSRD 36545
17-03-18 02:00:34.872 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:34.872 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:00:34.872 -07 000000512 INF: FPGA: Recv ZPIEZORD 32683
17-03-18 02:00:34.882 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:34.882 -07 000000437 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.835 V. Piezo Error = -8.5 V.
17-03-18 02:00:34.882 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36539 (-174.2 uncal um), Error = 0.9 uncal um, Median = 36540 (-174.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36533 (-174.1 uncal um), Max = 36545 (-174.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:00:34.882 -07 000000437 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36539, posNoise = 6, negNoise = 6
17-03-18 02:00:34.882 -07 000000437 INF: Z Motor: After move to -0.175042, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:00:34.882 -07 000000437 INF: Z Motor: Settle wait time = 1462 ms, measure time = 108 ms (allowed 150 ms), total time = 1570 ms
17-03-18 02:00:34.882 -07 000000437 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:00:34.932 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 02:00:34.932 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:00:34.932 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:00:34.932 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:00:34.932 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:00:34.932 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:00:34.932 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:00:34.932 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:00:34.932 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:00:34.932 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:00:34.942 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:00:34.942 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:00:34.952 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:00:34.952 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:00:34.952 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:00:35.002 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:00:35.042 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 4.007176,
17-03-18 02:00:35.302 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:00:35.302 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:00:35.302 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:00:35.302 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 02:00:35.342 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:00:35.342 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 02:00:35.342 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 388 ms overall
17-03-18 02:00:35.412 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:00:35.412 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:35.422 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:00:35.422 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:00:35.442 -07 000000569 INF: Autofocus start
17-03-18 02:00:35.442 -07 000000569 INF: MeasureProfile start
17-03-18 02:00:35.442 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:00:35.442 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:00:35.452 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:00:35.452 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:00:35.452 -07 000000569 INF: MeasureProfile done
17-03-18 02:00:35.452 -07 000000569 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:00:35.452 -07 000000569 INF: Autofocus finished
17-03-18 02:00:35.652 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:00:35.652 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:00:35.662 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.175057639458939. ----------
17-03-18 02:00:35.662 -07 000000610 INF: Cycle	94	Tile	11	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:00:35.662 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36753, sync = True, waitForSettling = True)
17-03-18 02:00:35.662 -07 000000610 INF: Z Motor: Moving to -0.168244 mm, started at -0.175058 mm, distance = 6.81 um
17-03-18 02:00:35.662 -07 000000610 INF: FPGA: Xmit ZDACW 36753\n [Z Motor]
17-03-18 02:00:35.662 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 02:00:35.672 -07 000000610 INF: FPGA: 'ZDACW 36753' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:00:35.672 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:00:35.672 -07 000000592 INF: FPGA: Recv ZDACR 36753
17-03-18 02:00:35.682 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:35.682 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:00:35.832 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:35.832 -07 000000608 INF: FPGA: Recv ZSGSRD 35477
17-03-18 02:00:35.842 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:00:35.842 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:35.842 -07 000000592 INF: FPGA: Recv ZSGSRD 35482
17-03-18 02:00:35.852 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:35.852 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:35.852 -07 000000462 INF: FPGA: Recv ZSGSRD 35478
17-03-18 02:00:35.862 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:35.862 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:35.862 -07 000000592 INF: FPGA: Recv ZSGSRD 35477
17-03-18 02:00:35.872 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:35.872 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:35.872 -07 000000569 INF: FPGA: Recv ZSGSRD 35484
17-03-18 02:00:35.882 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:35.882 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:35.882 -07 000000592 INF: FPGA: Recv ZSGSRD 35484
17-03-18 02:00:35.892 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:35.892 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:35.892 -07 000000462 INF: FPGA: Recv ZSGSRD 35481
17-03-18 02:00:35.902 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:35.902 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:35.902 -07 000000608 INF: FPGA: Recv ZSGSRD 35479
17-03-18 02:00:35.912 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:35.912 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:35.912 -07 000000462 INF: FPGA: Recv ZSGSRD 35481
17-03-18 02:00:35.922 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:35.922 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:35.922 -07 000000512 INF: FPGA: Recv ZSGSRD 35482
17-03-18 02:00:35.932 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:35.932 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:00:35.932 -07 000000592 INF: FPGA: Recv ZPIEZORD 31298
17-03-18 02:00:35.942 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:35.942 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.608 V. Piezo Error = -9.2 V.
17-03-18 02:00:35.942 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35480 (-167.4 uncal um), Error = 0.9 uncal um, Median = 35481 (-167.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35477 (-167.4 uncal um), Max = 35484 (-167.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:00:35.942 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35480, posNoise = 4, negNoise = 3
17-03-18 02:00:35.942 -07 000000610 INF: Z Motor: After move to -0.168244, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:00:35.942 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 02:00:35.942 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:00:35.942 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:00:35.942 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:00:35.942 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:00:35.942 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:00:35.942 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:00:35.942 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:00:35.942 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:00:35.942 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:00:35.942 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:00:35.942 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:00:35.942 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:00:35.952 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:00:35.952 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:00:35.952 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:00:35.952 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:00:35.952 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:00:35.962 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 02:00:35.962 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:00:35.962 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:00:35.962 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36930 150\n [Camera]
17-03-18 02:00:36.162 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 02:00:36.522 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:00:36.522 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:00:36.552 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:00:36.552 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:00:36.552 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:00:36.552 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:00:36.552 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:00:36.552 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 02:00:36.552 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:00:36.552 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:00:36.552 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:00:36.552 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 02:00:36.752 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36930 779
17-03-18 02:00:36.892 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:00:36.952 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 02:00:36.952 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:00:36.952 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:36.952 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:00:36.952 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:00:36.952 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:36.962 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:00:36.962 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:00:36.962 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:00:36.962 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:00:37.082 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:00:37.082 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:00:37.082 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:00:37.082 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:00:37.082 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 02:00:37.082 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:00:37.082 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:00:37.082 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:00:37.082 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:00:37.082 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 02:00:37.272 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 02:00:37.272 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:00:37.272 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36930 150' command took 2 ms to send, 1307 ms to get response, and 1315 ms overall
17-03-18 02:00:37.272 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:00:37.272 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.168254398800814. ------
17-03-18 02:00:37.282 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:00:37.282 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17486 mm
17-03-18 02:00:37.282 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:00:37.282 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:00:37.282 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 02:00:37.282 -07 000000608 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 02:00:37.282 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38198, sync = True, waitForSettling = False)
17-03-18 02:00:37.282 -07 000000579 INF: Z Motor: Moving to -0.174859 mm, started at -0.168254 mm, distance = -6.60 um
17-03-18 02:00:37.292 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:00:37.292 -07 000000579 INF: FPGA: Xmit ZDACW 38198\n [Z Motor]
17-03-18 02:00:37.292 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 02:00:37.302 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:37.302 -07 000000579 INF: FPGA: 'ZDACW 38198' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:00:37.302 -07 000000561 INF: FPGA: Recv YRDPOS 139683
17-03-18 02:00:37.312 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:00:37.312 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:00:37.312 -07 000000608 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:37.312 -07 000000608 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:00:37.312 -07 000000608 INF: Y Motor: Moving 1341 steps-16
17-03-18 02:00:37.322 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:00:37.322 -07 000000569 INF: FPGA: Recv ZDACR 38198
17-03-18 02:00:37.332 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:00:37.332 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:00:37.332 -07 000000579 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 02:00:37.472 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 02:00:37.472 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:00:37.472 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:37.482 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:00:37.482 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:00:37.482 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:00:37.482 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:37.482 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:00:37.482 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:00:37.482 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:00:37.512 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:00:37.512 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:00:37.702 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 02:00:37.702 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:00:37.752 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:37.752 -07 000000437 INF: FPGA: Recv YRDPOS 141366
17-03-18 02:00:37.762 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:00:37.762 -07 000000608 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:37.762 -07 000000608 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 02:00:37.762 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-18 02:00:38.711 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:38.711 -07 000000424 INF: FPGA: Recv YRDPOS 141366
17-03-18 02:00:38.721 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:00:38.721 -07 000000608 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:38.741 -07 000000608 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:00:38.741 -07 000000608 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:00:38.741 -07 000000608 INF: Y Motor: Moved to 69.0264 after 1460 ms (table move)
17-03-18 02:00:38.751 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174859 mm (DAC = 38198)
17-03-18 02:00:38.751 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:38.751 -07 000000424 INF: FPGA: Recv ZSGSRD 36510
17-03-18 02:00:38.761 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:00:38.761 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:38.761 -07 000000424 INF: FPGA: Recv ZSGSRD 36515
17-03-18 02:00:38.771 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:38.771 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:38.771 -07 000000424 INF: FPGA: Recv ZSGSRD 36511
17-03-18 02:00:38.781 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:38.781 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:38.781 -07 000000424 INF: FPGA: Recv ZSGSRD 36509
17-03-18 02:00:38.791 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:38.791 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:38.791 -07 000000424 INF: FPGA: Recv ZSGSRD 36511
17-03-18 02:00:38.801 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:38.801 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:38.801 -07 000000561 INF: FPGA: Recv ZSGSRD 36506
17-03-18 02:00:38.811 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:38.811 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:38.811 -07 000000424 INF: FPGA: Recv ZSGSRD 36512
17-03-18 02:00:38.821 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:38.821 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:38.821 -07 000000437 INF: FPGA: Recv ZSGSRD 36510
17-03-18 02:00:38.831 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:38.831 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:38.831 -07 000000629 INF: FPGA: Recv ZSGSRD 36513
17-03-18 02:00:38.841 -07 000000462 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:38.841 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:38.841 -07 000000592 INF: FPGA: Recv ZSGSRD 36516
17-03-18 02:00:38.851 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:38.851 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:00:38.851 -07 000000461 INF: FPGA: Recv ZPIEZORD 32672
17-03-18 02:00:38.861 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:38.861 -07 000000462 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.829 V. Piezo Error = -8.5 V.
17-03-18 02:00:38.861 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36511 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36511 (-174.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36506 (-174.0 uncal um), Max = 36516 (-174.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:00:38.861 -07 000000462 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36511, posNoise = 5, negNoise = 5
17-03-18 02:00:38.861 -07 000000462 INF: Z Motor: After move to -0.174859, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:00:38.861 -07 000000462 INF: Z Motor: Settle wait time = 1463 ms, measure time = 109 ms (allowed 150 ms), total time = 1572 ms
17-03-18 02:00:38.861 -07 000000462 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:00:38.911 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 02:00:38.911 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:00:38.911 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:00:38.911 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:00:38.911 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:00:38.911 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:00:38.911 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:00:38.911 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:00:38.911 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:00:38.911 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:00:38.921 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:00:38.921 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:00:38.931 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 02:00:38.931 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 02:00:38.931 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:00:38.971 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:00:39.271 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:00:39.271 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:00:39.271 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:00:39.271 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-18 02:00:39.311 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:00:39.311 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 02:00:39.311 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:00:39.391 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:00:39.391 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:39.391 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:00:39.391 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:00:39.411 -07 000000592 INF: Autofocus start
17-03-18 02:00:39.411 -07 000000592 INF: MeasureProfile start
17-03-18 02:00:39.411 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:00:39.411 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:00:39.421 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:00:39.421 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:00:39.421 -07 000000592 INF: MeasureProfile done
17-03-18 02:00:39.421 -07 000000592 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:00:39.421 -07 000000592 INF: Autofocus finished
17-03-18 02:00:39.621 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:00:39.621 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:00:39.631 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.174877761518969. ----------
17-03-18 02:00:39.631 -07 000000610 INF: Cycle	94	Tile	12	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:00:39.631 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36730, sync = True, waitForSettling = True)
17-03-18 02:00:39.631 -07 000000610 INF: Z Motor: Moving to -0.168139 mm, started at -0.174878 mm, distance = 6.74 um
17-03-18 02:00:39.631 -07 000000610 INF: FPGA: Xmit ZDACW 36730\n [Z Motor]
17-03-18 02:00:39.631 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 02:00:39.641 -07 000000610 INF: FPGA: 'ZDACW 36730' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:00:39.641 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:00:39.641 -07 000000462 INF: FPGA: Recv ZDACR 36730
17-03-18 02:00:39.651 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:39.651 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:00:39.801 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:39.801 -07 000000592 INF: FPGA: Recv ZSGSRD 35465
17-03-18 02:00:39.811 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:39.811 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:39.811 -07 000000579 INF: FPGA: Recv ZSGSRD 35466
17-03-18 02:00:39.821 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:39.821 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:39.821 -07 000000592 INF: FPGA: Recv ZSGSRD 35470
17-03-18 02:00:39.831 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:39.831 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:39.831 -07 000000462 INF: FPGA: Recv ZSGSRD 35457
17-03-18 02:00:39.841 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:39.841 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:39.841 -07 000000592 INF: FPGA: Recv ZSGSRD 35461
17-03-18 02:00:39.851 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:39.851 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:39.851 -07 000000579 INF: FPGA: Recv ZSGSRD 35468
17-03-18 02:00:39.861 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:39.861 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:39.861 -07 000000592 INF: FPGA: Recv ZSGSRD 35471
17-03-18 02:00:39.871 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:39.871 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:39.871 -07 000000579 INF: FPGA: Recv ZSGSRD 35463
17-03-18 02:00:39.881 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:39.881 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:39.881 -07 000000512 INF: FPGA: Recv ZSGSRD 35464
17-03-18 02:00:39.891 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:39.891 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:39.891 -07 000000462 INF: FPGA: Recv ZSGSRD 35463
17-03-18 02:00:39.901 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:39.901 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:00:39.901 -07 000000462 INF: FPGA: Recv ZPIEZORD 31300
17-03-18 02:00:39.911 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:39.911 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.605 V. Piezo Error = -9.2 V.
17-03-18 02:00:39.911 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35465 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35464 (-167.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35457 (-167.2 uncal um), Max = 35471 (-167.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:00:39.911 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35465, posNoise = 6, negNoise = 8
17-03-18 02:00:39.911 -07 000000610 INF: Z Motor: After move to -0.168139, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:00:39.911 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 02:00:39.911 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:00:39.911 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:00:39.911 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:00:39.911 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:00:39.911 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:00:39.911 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:00:39.911 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:00:39.911 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:00:39.911 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:00:39.911 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:00:39.911 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-18 02:00:39.911 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:00:39.921 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:00:39.921 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:00:39.921 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:00:39.921 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:00:39.931 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:00:39.931 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:00:39.931 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:00:39.931 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:00:39.931 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36907 150\n [Camera]
17-03-18 02:00:40.131 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:00:40.401 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 3.993549,
17-03-18 02:00:40.521 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:00:40.521 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:00:40.521 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:00:40.521 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:00:40.521 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 02:00:40.521 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:00:40.521 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:00:40.521 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:00:40.521 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:00:40.521 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 02:00:40.711 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36907 777
17-03-18 02:00:40.861 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:00:40.921 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 02:00:40.921 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:00:40.921 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:40.921 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:00:40.921 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:00:40.921 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:40.921 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:00:40.931 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:00:40.931 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:00:40.931 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:00:41.051 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:00:41.051 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:00:41.051 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:00:41.051 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:00:41.051 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 02:00:41.051 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:00:41.051 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:00:41.051 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:00:41.201 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:00:41.201 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 02:00:41.241 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:00:41.251 -07 000000592 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:00:41.251 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36907 150' command took 2 ms to send, 1310 ms to get response, and 1317 ms overall
17-03-18 02:00:41.251 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:00:41.251 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.168158035618687. ------
17-03-18 02:00:41.251 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:00:41.251 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17465 mm
17-03-18 02:00:41.251 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:00:41.251 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38152, sync = True, waitForSettling = False)
17-03-18 02:00:41.251 -07 000000592 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 02:00:41.251 -07 000000592 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 02:00:41.251 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:00:41.251 -07 000000424 INF: Z Motor: Moving to -0.174649 mm, started at -0.168158 mm, distance = -6.49 um
17-03-18 02:00:41.261 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:00:41.261 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:41.261 -07 000000611 INF: FPGA: Recv YRDPOS 141367
17-03-18 02:00:41.271 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:00:41.271 -07 000000592 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:41.271 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:00:41.271 -07 000000592 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:00:41.271 -07 000000592 INF: Y Motor: Moving 1353 steps-33
17-03-18 02:00:41.281 -07 000000424 INF: FPGA: Xmit ZDACW 38152\n [Z Motor]
17-03-18 02:00:41.281 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:00:41.291 -07 000000592 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:00:41.291 -07 000000424 INF: FPGA: 'ZDACW 38152' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 02:00:41.301 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:00:41.301 -07 000000512 INF: FPGA: Recv ZDACR 38152
17-03-18 02:00:41.311 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:00:41.311 -07 000000424 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 02:00:41.461 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 409 ms.
17-03-18 02:00:41.461 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:00:41.461 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:41.471 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:00:41.471 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 02:00:41.471 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:00:41.471 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-18 02:00:41.521 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:00:41.521 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:00:41.591 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 02:00:41.591 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:00:41.591 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:41.591 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:00:41.601 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 542 ms.
17-03-18 02:00:41.671 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 02:00:41.671 -07 000000592 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 397 ms overall
17-03-18 02:00:41.711 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:41.711 -07 000000502 INF: FPGA: Recv YRDPOS 143078
17-03-18 02:00:41.721 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:00:41.721 -07 000000592 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:41.721 -07 000000592 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 02:00:41.721 -07 000000592 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-18 02:00:42.670 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:42.670 -07 000000424 INF: FPGA: Recv YRDPOS 143078
17-03-18 02:00:42.680 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:00:42.680 -07 000000592 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:42.700 -07 000000592 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:00:42.700 -07 000000592 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:00:42.700 -07 000000592 INF: Y Motor: Moved to 69.8623 after 1449 ms (table move)
17-03-18 02:00:42.710 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174649 mm (DAC = 38152)
17-03-18 02:00:42.710 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:42.710 -07 000000592 INF: FPGA: Recv ZSGSRD 36482
17-03-18 02:00:42.720 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:00:42.720 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:42.720 -07 000000447 INF: FPGA: Recv ZSGSRD 36474
17-03-18 02:00:42.730 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:42.730 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:42.730 -07 000000447 INF: FPGA: Recv ZSGSRD 36477
17-03-18 02:00:42.740 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:42.740 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:42.740 -07 000000444 INF: FPGA: Recv ZSGSRD 36474
17-03-18 02:00:42.750 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:42.750 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:42.750 -07 000000444 INF: FPGA: Recv ZSGSRD 36471
17-03-18 02:00:42.760 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:42.760 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:42.760 -07 000000424 INF: FPGA: Recv ZSGSRD 36479
17-03-18 02:00:42.770 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:42.770 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:42.770 -07 000000444 INF: FPGA: Recv ZSGSRD 36483
17-03-18 02:00:42.780 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:42.780 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:42.780 -07 000000512 INF: FPGA: Recv ZSGSRD 36476
17-03-18 02:00:42.790 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:42.790 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:42.790 -07 000000512 INF: FPGA: Recv ZSGSRD 36478
17-03-18 02:00:42.800 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:42.800 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:42.800 -07 000000444 INF: FPGA: Recv ZSGSRD 36472
17-03-18 02:00:42.810 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:42.810 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:00:42.810 -07 000000444 INF: FPGA: Recv ZPIEZORD 32653
17-03-18 02:00:42.820 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:42.820 -07 000000579 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.822 V. Piezo Error = -8.5 V.
17-03-18 02:00:42.820 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.6 um, Read 10 ADC samples: Avg = 36477 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36476 (-173.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36471 (-173.7 uncal um), Max = 36483 (-173.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:00:42.820 -07 000000579 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36477, posNoise = 6, negNoise = 6
17-03-18 02:00:42.820 -07 000000579 INF: Z Motor: After move to -0.174649, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:00:42.820 -07 000000579 INF: Z Motor: Settle wait time = 1452 ms, measure time = 109 ms (allowed 150 ms), total time = 1561 ms
17-03-18 02:00:42.820 -07 000000579 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:00:42.870 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 02:00:42.870 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:00:42.870 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:00:42.870 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:00:42.870 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:00:42.870 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:00:42.870 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:00:42.870 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:00:42.870 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:00:42.870 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:00:42.880 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:00:42.880 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:00:42.890 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:00:42.890 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:00:42.890 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:00:42.940 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:00:43.240 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:00:43.240 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:00:43.240 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:00:43.240 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 02:00:43.280 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:00:43.280 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 02:00:43.280 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 02:00:43.360 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 02:00:43.360 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:43.360 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:00:43.370 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-18 02:00:43.380 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:00:43.380 -07 000000579 INF: Autofocus start
17-03-18 02:00:43.380 -07 000000579 INF: MeasureProfile start
17-03-18 02:00:43.380 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:00:43.390 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:00:43.390 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:00:43.390 -07 000000579 INF: MeasureProfile done
17-03-18 02:00:43.390 -07 000000579 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 02:00:43.390 -07 000000579 INF: Autofocus finished
17-03-18 02:00:43.590 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:00:43.590 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:00:43.590 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.174659338306149. ----------
17-03-18 02:00:43.600 -07 000000610 INF: Cycle	94	Tile	13	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:00:43.600 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36632, sync = True, waitForSettling = True)
17-03-18 02:00:43.600 -07 000000610 INF: Z Motor: Moving to -0.167691 mm, started at -0.174659 mm, distance = 6.97 um
17-03-18 02:00:43.600 -07 000000610 INF: FPGA: Xmit ZDACW 36632\n [Z Motor]
17-03-18 02:00:43.600 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:00:43.610 -07 000000610 INF: FPGA: 'ZDACW 36632' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:00:43.610 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:00:43.610 -07 000000591 INF: FPGA: Recv ZDACR 36632
17-03-18 02:00:43.620 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:43.620 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:00:43.770 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:43.770 -07 000000424 INF: FPGA: Recv ZSGSRD 35400
17-03-18 02:00:43.780 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:00:43.780 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:43.780 -07 000000585 INF: FPGA: Recv ZSGSRD 35390
17-03-18 02:00:43.790 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:43.790 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:43.790 -07 000000611 INF: FPGA: Recv ZSGSRD 35396
17-03-18 02:00:43.800 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:43.800 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:43.800 -07 000000447 INF: FPGA: Recv ZSGSRD 35388
17-03-18 02:00:43.810 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:43.810 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:43.810 -07 000000585 INF: FPGA: Recv ZSGSRD 35397
17-03-18 02:00:43.820 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:43.820 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:43.820 -07 000000611 INF: FPGA: Recv ZSGSRD 35388
17-03-18 02:00:43.830 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:43.830 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:43.830 -07 000000585 INF: FPGA: Recv ZSGSRD 35392
17-03-18 02:00:43.840 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:43.840 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:43.840 -07 000000447 INF: FPGA: Recv ZSGSRD 35397
17-03-18 02:00:43.850 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:43.850 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:43.850 -07 000000611 INF: FPGA: Recv ZSGSRD 35392
17-03-18 02:00:43.860 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:43.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:43.860 -07 000000512 INF: FPGA: Recv ZSGSRD 35392
17-03-18 02:00:43.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:43.870 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:00:43.870 -07 000000585 INF: FPGA: Recv ZPIEZORD 31202
17-03-18 02:00:43.880 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:43.880 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.590 V. Piezo Error = -9.2 V.
17-03-18 02:00:43.880 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35393 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35392 (-166.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35388 (-166.8 uncal um), Max = 35400 (-166.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:00:43.880 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35393, posNoise = 7, negNoise = 5
17-03-18 02:00:43.880 -07 000000610 INF: Z Motor: After move to -0.167691, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:00:43.880 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:00:43.880 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:00:43.880 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:00:43.880 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:00:43.880 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:00:43.880 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:00:43.880 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:00:43.880 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:00:43.880 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:00:43.880 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:00:43.880 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:00:43.880 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:00:43.880 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:00:43.890 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:00:43.890 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:00:43.890 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:00:43.890 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:00:43.900 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:00:43.900 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:00:43.900 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:00:43.900 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:00:43.910 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36809 150\n [Camera]
17-03-18 02:00:44.110 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:00:44.500 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:00:44.500 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:00:44.500 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:00:44.500 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:00:44.500 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:00:44.500 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:00:44.500 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:00:44.500 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:00:44.510 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:00:44.510 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 02:00:44.690 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36809 777
17-03-18 02:00:44.840 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:00:44.900 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:00:44.900 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:00:44.900 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:44.900 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:00:44.900 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:00:44.910 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 02:00:44.910 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:00:44.910 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:44.910 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:00:44.920 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:00:45.030 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:00:45.030 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:00:45.030 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:00:45.030 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:00:45.030 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:00:45.030 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:00:45.150 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:00:45.150 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 02:00:45.150 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:00:45.150 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 02:00:45.220 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 02:00:45.220 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:00:45.220 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36809 150' command took 2 ms to send, 1305 ms to get response, and 1314 ms overall
17-03-18 02:00:45.220 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:00:45.220 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8623046875, Z-Position -0.167695492344481. ------
17-03-18 02:00:45.230 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:00:45.230 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17372 mm
17-03-18 02:00:45.230 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:00:45.230 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 02:00:45.230 -07 000000591 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-18 02:00:45.230 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:00:45.230 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 37948, sync = True, waitForSettling = False)
17-03-18 02:00:45.230 -07 000000611 INF: Z Motor: Moving to -0.173715 mm, started at -0.167695 mm, distance = -6.02 um
17-03-18 02:00:45.240 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:45.240 -07 000000611 INF: FPGA: Xmit ZDACW 37948\n [Z Motor]
17-03-18 02:00:45.240 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:00:45.250 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:45.250 -07 000000611 INF: FPGA: 'ZDACW 37948' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:00:45.250 -07 000000444 INF: FPGA: Recv YRDPOS 143079
17-03-18 02:00:45.260 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:00:45.260 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:00:45.260 -07 000000591 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:45.260 -07 000000591 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:00:45.260 -07 000000591 INF: Y Motor: Moving 1344 steps-21
17-03-18 02:00:45.270 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:00:45.270 -07 000000444 INF: FPGA: Recv ZDACR 37948
17-03-18 02:00:45.280 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:00:45.280 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:00:45.280 -07 000000611 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 02:00:45.460 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:00:45.460 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 224 ms overall
17-03-18 02:00:45.540 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 02:00:45.540 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:00:45.540 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:45.550 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:00:45.550 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:00:45.550 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:45.550 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:00:45.550 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:00:45.550 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-18 02:00:45.560 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 523 ms.
17-03-18 02:00:45.650 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 02:00:45.650 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 02:00:45.700 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:45.700 -07 000000512 INF: FPGA: Recv YRDPOS 144769
17-03-18 02:00:45.710 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:00:45.710 -07 000000591 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:45.710 -07 000000591 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 02:00:45.710 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.840 mm, average velocity = 2.144 mm/sec
17-03-18 02:00:45.760 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 3.997626,
17-03-18 02:00:46.519 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:00:46.519 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:00:46.659 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:46.659 -07 000000608 INF: FPGA: Recv YRDPOS 144769
17-03-18 02:00:46.669 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:00:46.669 -07 000000591 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:46.689 -07 000000591 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:00:46.689 -07 000000591 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:00:46.689 -07 000000591 INF: Y Motor: Moved to 70.6880 after 1464 ms (table move)
17-03-18 02:00:46.699 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173715 mm (DAC = 37948)
17-03-18 02:00:46.699 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:46.699 -07 000000512 INF: FPGA: Recv ZSGSRD 36334
17-03-18 02:00:46.709 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:46.709 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:46.709 -07 000000629 INF: FPGA: Recv ZSGSRD 36335
17-03-18 02:00:46.719 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:46.719 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:46.719 -07 000000447 INF: FPGA: Recv ZSGSRD 36334
17-03-18 02:00:46.729 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:46.729 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:46.729 -07 000000444 INF: FPGA: Recv ZSGSRD 36335
17-03-18 02:00:46.739 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:46.739 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:46.739 -07 000000611 INF: FPGA: Recv ZSGSRD 36329
17-03-18 02:00:46.749 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:46.749 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:46.749 -07 000000461 INF: FPGA: Recv ZSGSRD 36329
17-03-18 02:00:46.759 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:46.759 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:46.759 -07 000000561 INF: FPGA: Recv ZSGSRD 36335
17-03-18 02:00:46.769 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:46.769 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:46.769 -07 000000444 INF: FPGA: Recv ZSGSRD 36328
17-03-18 02:00:46.779 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:46.779 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:46.779 -07 000000611 INF: FPGA: Recv ZSGSRD 36337
17-03-18 02:00:46.789 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:46.789 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:46.789 -07 000000608 INF: FPGA: Recv ZSGSRD 36331
17-03-18 02:00:46.799 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:46.799 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:00:46.799 -07 000000447 INF: FPGA: Recv ZPIEZORD 32438
17-03-18 02:00:46.809 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:46.809 -07 000000502 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.790 V. Piezo Error = -8.6 V.
17-03-18 02:00:46.809 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36333 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36334 (-172.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36328 (-172.8 uncal um), Max = 36337 (-172.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:00:46.809 -07 000000502 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36333, posNoise = 4, negNoise = 5
17-03-18 02:00:46.809 -07 000000502 INF: Z Motor: After move to -0.173715, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:00:46.809 -07 000000502 INF: Z Motor: Settle wait time = 1466 ms, measure time = 109 ms (allowed 150 ms), total time = 1575 ms
17-03-18 02:00:46.809 -07 000000502 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:00:46.859 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 02:00:46.859 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:00:46.859 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:00:46.859 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:00:46.859 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:00:46.859 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:00:46.859 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:00:46.859 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:00:46.869 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:00:46.869 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:00:46.869 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:00:46.869 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:00:46.879 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:00:46.879 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:00:46.879 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:00:46.929 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:00:47.229 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:00:47.229 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:00:47.229 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:00:47.229 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 02:00:47.269 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:00:47.269 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 02:00:47.269 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 02:00:47.359 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:00:47.359 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:47.359 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:00:47.359 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:00:47.369 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:00:47.369 -07 000000512 INF: Autofocus start
17-03-18 02:00:47.369 -07 000000512 INF: MeasureProfile start
17-03-18 02:00:47.369 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:00:47.379 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:00:47.379 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:00:47.379 -07 000000512 INF: MeasureProfile done
17-03-18 02:00:47.379 -07 000000512 INF: X=128  Z correction [um]=0.5828849
17-03-18 02:00:47.379 -07 000000512 INF: Autofocus finished
17-03-18 02:00:47.579 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:00:47.579 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 02:00:47.579 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.173734251757736. ----------
17-03-18 02:00:47.579 -07 000000610 INF: Cycle	94	Tile	14	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:00:47.589 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36588, sync = True, waitForSettling = True)
17-03-18 02:00:47.589 -07 000000610 INF: Z Motor: Moving to -0.167489 mm, started at -0.173734 mm, distance = 6.25 um
17-03-18 02:00:47.589 -07 000000610 INF: FPGA: Xmit ZDACW 36588\n [Z Motor]
17-03-18 02:00:47.589 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:00:47.599 -07 000000610 INF: FPGA: 'ZDACW 36588' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:47.599 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:00:47.599 -07 000000608 INF: FPGA: Recv ZDACR 36588
17-03-18 02:00:47.609 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:47.609 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:00:47.759 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:47.759 -07 000000462 INF: FPGA: Recv ZSGSRD 35355
17-03-18 02:00:47.769 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:00:47.769 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:47.769 -07 000000561 INF: FPGA: Recv ZSGSRD 35359
17-03-18 02:00:47.779 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:47.779 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:47.779 -07 000000591 INF: FPGA: Recv ZSGSRD 35359
17-03-18 02:00:47.789 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:47.789 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:47.789 -07 000000512 INF: FPGA: Recv ZSGSRD 35359
17-03-18 02:00:47.799 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:47.799 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:47.799 -07 000000462 INF: FPGA: Recv ZSGSRD 35363
17-03-18 02:00:47.809 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:47.809 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:47.809 -07 000000585 INF: FPGA: Recv ZSGSRD 35366
17-03-18 02:00:47.819 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:47.819 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:47.819 -07 000000502 INF: FPGA: Recv ZSGSRD 35357
17-03-18 02:00:47.829 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:47.829 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:47.829 -07 000000447 INF: FPGA: Recv ZSGSRD 35362
17-03-18 02:00:47.839 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:47.839 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:47.839 -07 000000447 INF: FPGA: Recv ZSGSRD 35362
17-03-18 02:00:47.849 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:47.849 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:47.849 -07 000000444 INF: FPGA: Recv ZSGSRD 35361
17-03-18 02:00:47.859 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:47.859 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:00:47.859 -07 000000579 INF: FPGA: Recv ZPIEZORD 31164
17-03-18 02:00:47.869 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:47.869 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.583 V. Piezo Error = -9.3 V.
17-03-18 02:00:47.869 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35360 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35360 (-166.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35355 (-166.6 uncal um), Max = 35366 (-166.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:00:47.869 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35360, posNoise = 6, negNoise = 5
17-03-18 02:00:47.869 -07 000000610 INF: Z Motor: After move to -0.167489, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:00:47.869 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:00:47.869 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:00:47.869 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:00:47.869 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:00:47.869 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:00:47.869 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:00:47.869 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:00:47.869 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:00:47.869 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:00:47.869 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:00:47.869 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:00:47.869 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:00:47.869 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:00:47.879 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:00:47.879 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:00:47.879 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:00:47.879 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:00:47.879 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:00:47.879 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:00:47.889 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:00:47.889 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:00:47.889 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36765 150\n [Camera]
17-03-18 02:00:48.089 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:00:48.479 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:00:48.479 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:00:48.479 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:00:48.479 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:00:48.479 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:00:48.489 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:00:48.489 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:00:48.489 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1086685344, 0x0, 391868352) start.
17-03-18 02:00:48.489 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:00:48.489 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 02:00:48.669 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36765 777
17-03-18 02:00:48.819 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:00:48.879 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1086685344, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 02:00:48.879 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:00:48.879 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:48.889 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 02:00:48.889 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:00:48.889 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:48.889 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:00:48.889 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 02:00:48.889 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:00:48.899 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:00:49.009 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:00:49.009 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:00:49.009 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:00:49.009 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:00:49.009 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 02:00:49.019 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:00:49.019 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:00:49.019 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:00:49.019 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:00:49.019 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 02:00:49.199 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 02:00:49.199 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:00:49.199 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36765 150' command took 2 ms to send, 1309 ms to get response, and 1314 ms overall
17-03-18 02:00:49.209 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:00:49.209 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.167483493343802. ------
17-03-18 02:00:49.209 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:00:49.209 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17410 mm
17-03-18 02:00:49.209 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:00:49.209 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38031, sync = True, waitForSettling = False)
17-03-18 02:00:49.209 -07 000000502 INF: Z Motor: Moving to -0.174095 mm, started at -0.167483 mm, distance = -6.61 um
17-03-18 02:00:49.219 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:00:49.219 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:00:49.219 -07 000000502 INF: FPGA: Xmit ZDACW 38031\n [Z Motor]
17-03-18 02:00:49.219 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 02:00:49.219 -07 000000512 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 02:00:49.219 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 02:00:49.229 -07 000000502 INF: FPGA: 'ZDACW 38031' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:49.229 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:00:49.229 -07 000000444 INF: FPGA: Recv ZDACR 38031
17-03-18 02:00:49.239 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:49.239 -07 000000502 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 02:00:49.239 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:49.239 -07 000000502 INF: FPGA: Recv YRDPOS 144769
17-03-18 02:00:49.249 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:00:49.249 -07 000000512 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:49.249 -07 000000512 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:00:49.249 -07 000000512 INF: Y Motor: Moving 1351 steps-30
17-03-18 02:00:49.249 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:00:49.259 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:00:49.409 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 02:00:49.409 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:00:49.409 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:49.409 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 02:00:49.409 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:00:49.409 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:49.409 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:00:49.419 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:00:49.419 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:00:49.419 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:00:49.449 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:00:49.449 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 233 ms overall
17-03-18 02:00:49.639 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 02:00:49.639 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 390 ms overall
17-03-18 02:00:49.679 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:49.679 -07 000000502 INF: FPGA: Recv YRDPOS 146469
17-03-18 02:00:49.689 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:00:49.689 -07 000000512 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:49.689 -07 000000512 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 02:00:49.689 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.845 mm, average velocity = 2.166 mm/sec
17-03-18 02:00:50.639 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:50.639 -07 000000444 INF: FPGA: Recv YRDPOS 146470
17-03-18 02:00:50.649 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:00:50.649 -07 000000512 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:50.668 -07 000000512 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:00:50.668 -07 000000512 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:00:50.668 -07 000000512 INF: Y Motor: Moved to 71.5186 after 1457 ms (table move)
17-03-18 02:00:50.678 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174095 mm (DAC = 38031)
17-03-18 02:00:50.678 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:50.678 -07 000000444 INF: FPGA: Recv ZSGSRD 36394
17-03-18 02:00:50.688 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:00:50.688 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:50.688 -07 000000447 INF: FPGA: Recv ZSGSRD 36377
17-03-18 02:00:50.698 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:50.698 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:50.698 -07 000000444 INF: FPGA: Recv ZSGSRD 36384
17-03-18 02:00:50.708 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:50.708 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:50.708 -07 000000447 INF: FPGA: Recv ZSGSRD 36390
17-03-18 02:00:50.718 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:50.718 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:50.718 -07 000000462 INF: FPGA: Recv ZSGSRD 36389
17-03-18 02:00:50.728 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:50.728 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:50.728 -07 000000512 INF: FPGA: Recv ZSGSRD 36398
17-03-18 02:00:50.738 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:50.738 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:50.738 -07 000000462 INF: FPGA: Recv ZSGSRD 36393
17-03-18 02:00:50.748 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:50.748 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:50.748 -07 000000579 INF: FPGA: Recv ZSGSRD 36396
17-03-18 02:00:50.758 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:50.758 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:50.758 -07 000000444 INF: FPGA: Recv ZSGSRD 36389
17-03-18 02:00:50.768 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:50.768 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:50.768 -07 000000512 INF: FPGA: Recv ZSGSRD 36392
17-03-18 02:00:50.778 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:50.778 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:00:50.778 -07 000000462 INF: FPGA: Recv ZPIEZORD 32540
17-03-18 02:00:50.788 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:50.788 -07 000000424 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.803 V. Piezo Error = -8.5 V.
17-03-18 02:00:50.788 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.1 um, Read 10 ADC samples: Avg = 36390 (-173.2 uncal um), Error = 0.9 uncal um, Median = 36391 (-173.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 36377 (-173.1 uncal um), Max = 36398 (-173.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-18 02:00:50.788 -07 000000424 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36390, posNoise = 8, negNoise = 13
17-03-18 02:00:50.788 -07 000000424 INF: Z Motor: After move to -0.174095, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:00:50.788 -07 000000424 INF: Z Motor: Settle wait time = 1462 ms, measure time = 108 ms (allowed 150 ms), total time = 1570 ms
17-03-18 02:00:50.788 -07 000000424 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:00:50.838 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 02:00:50.838 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:00:50.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:00:50.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:00:50.838 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:00:50.838 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:00:50.838 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:00:50.838 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:00:50.838 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:00:50.838 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:00:50.848 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:00:50.848 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:00:50.858 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:00:50.858 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:00:50.858 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:00:50.908 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:00:51.118 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 3.983999,
17-03-18 02:00:51.208 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:00:51.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:00:51.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:00:51.318 -07 000000502 INF: FPGA: Recv @CAMSNAP 381
17-03-18 02:00:51.318 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 02:00:51.318 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 455 ms to get response, and 459 ms overall
17-03-18 02:00:51.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) start.
17-03-18 02:00:51.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) end. Duration was 129 ms.
17-03-18 02:00:51.448 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:51.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:00:51.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 244 ms.
17-03-18 02:00:51.518 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:00:51.518 -07 000000444 INF: Autofocus start
17-03-18 02:00:51.518 -07 000000444 INF: MeasureProfile start
17-03-18 02:00:51.518 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:00:51.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:00:51.518 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:00:51.528 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:00:51.528 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:00:51.538 -07 000000444 INF: MeasureProfile done
17-03-18 02:00:51.538 -07 000000444 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:00:51.538 -07 000000444 INF: Autofocus finished
17-03-18 02:00:51.728 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:00:51.728 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:00:51.728 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.174100431849816. ----------
17-03-18 02:00:51.738 -07 000000610 INF: Cycle	94	Tile	15	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:00:51.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36546, sync = True, waitForSettling = True)
17-03-18 02:00:51.738 -07 000000610 INF: Z Motor: Moving to -0.167297 mm, started at -0.174100 mm, distance = 6.80 um
17-03-18 02:00:51.738 -07 000000610 INF: FPGA: Xmit ZDACW 36546\n [Z Motor]
17-03-18 02:00:51.738 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 02:00:51.748 -07 000000610 INF: FPGA: 'ZDACW 36546' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:00:51.748 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:00:51.748 -07 000000444 INF: FPGA: Recv ZDACR 36546
17-03-18 02:00:51.758 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:51.758 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:00:51.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:51.908 -07 000000569 INF: FPGA: Recv ZSGSRD 35333
17-03-18 02:00:51.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:51.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:51.918 -07 000000444 INF: FPGA: Recv ZSGSRD 35330
17-03-18 02:00:51.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:51.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:51.928 -07 000000569 INF: FPGA: Recv ZSGSRD 35334
17-03-18 02:00:51.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:51.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:51.938 -07 000000579 INF: FPGA: Recv ZSGSRD 35331
17-03-18 02:00:51.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:51.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:51.948 -07 000000569 INF: FPGA: Recv ZSGSRD 35332
17-03-18 02:00:51.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:51.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:51.958 -07 000000569 INF: FPGA: Recv ZSGSRD 35332
17-03-18 02:00:51.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:51.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:51.968 -07 000000444 INF: FPGA: Recv ZSGSRD 35338
17-03-18 02:00:51.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:51.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:51.978 -07 000000569 INF: FPGA: Recv ZSGSRD 35341
17-03-18 02:00:51.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:51.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:51.988 -07 000000608 INF: FPGA: Recv ZSGSRD 35339
17-03-18 02:00:51.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:51.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:51.998 -07 000000512 INF: FPGA: Recv ZSGSRD 35337
17-03-18 02:00:52.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:52.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:00:52.008 -07 000000444 INF: FPGA: Recv ZPIEZORD 31166
17-03-18 02:00:52.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:52.018 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.577 V. Piezo Error = -9.2 V.
17-03-18 02:00:52.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35335 (-166.5 uncal um), Error = 0.8 uncal um, Median = 35334 (-166.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35330 (-166.4 uncal um), Max = 35341 (-166.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:00:52.018 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35335, posNoise = 6, negNoise = 5
17-03-18 02:00:52.018 -07 000000610 INF: Z Motor: After move to -0.167297, error = -0.000026, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:00:52.018 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:00:52.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:00:52.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:00:52.018 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:00:52.018 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:00:52.018 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:00:52.018 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:00:52.018 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:00:52.018 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:00:52.018 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:00:52.018 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:00:52.018 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:00:52.018 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:00:52.018 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:00:52.018 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:00:52.028 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:00:52.028 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:00:52.028 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:00:52.028 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:00:52.028 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:00:52.028 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:00:52.038 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36723 150\n [Camera]
17-03-18 02:00:52.228 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:00:52.628 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:00:52.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:00:52.628 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:00:52.628 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:00:52.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:00:52.628 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:00:52.628 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:00:52.628 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:00:52.638 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:00:52.638 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:00:52.818 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36723 777
17-03-18 02:00:52.968 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:00:53.028 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:00:53.028 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:00:53.028 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:53.028 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:00:53.028 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:00:53.028 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 02:00:53.028 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:00:53.028 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:53.038 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:00:53.038 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:00:53.158 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:00:53.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:00:53.158 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:00:53.158 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:00:53.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:00:53.158 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:00:53.158 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:00:53.168 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:00:53.278 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:00:53.278 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 02:00:53.348 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 02:00:53.348 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:00:53.348 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36723 150' command took 2 ms to send, 1305 ms to get response, and 1314 ms overall
17-03-18 02:00:53.348 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:00:53.348 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.167322888040258. ------
17-03-18 02:00:53.358 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:00:53.358 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17365 mm
17-03-18 02:00:53.358 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:00:53.358 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:00:53.358 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 02:00:53.358 -07 000000447 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-18 02:00:53.358 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 37934, sync = True, waitForSettling = False)
17-03-18 02:00:53.358 -07 000000629 INF: Z Motor: Moving to -0.173651 mm, started at -0.167323 mm, distance = -6.33 um
17-03-18 02:00:53.368 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:53.368 -07 000000629 INF: FPGA: Xmit ZDACW 37934\n [Z Motor]
17-03-18 02:00:53.368 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 02:00:53.378 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:53.378 -07 000000629 INF: FPGA: 'ZDACW 37934' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:00:53.378 -07 000000502 INF: FPGA: Recv YRDPOS 146470
17-03-18 02:00:53.388 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:00:53.388 -07 000000447 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:53.388 -07 000000447 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:00:53.388 -07 000000447 INF: Y Motor: Moving 1350 steps-30
17-03-18 02:00:53.388 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:00:53.398 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:00:53.398 -07 000000502 INF: FPGA: Recv ZDACR 37934
17-03-18 02:00:53.408 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:00:53.408 -07 000000629 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 02:00:53.408 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:00:53.548 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 02:00:53.548 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:00:53.548 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:53.558 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:00:53.558 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:00:53.588 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:00:53.588 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 02:00:53.678 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:00:53.678 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:00:53.678 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:53.678 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:00:53.678 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-18 02:00:53.778 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 02:00:53.778 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 02:00:53.828 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:53.828 -07 000000611 INF: FPGA: Recv YRDPOS 148171
17-03-18 02:00:53.838 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:00:53.838 -07 000000447 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:53.838 -07 000000447 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:00:53.838 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-18 02:00:54.788 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:54.788 -07 000000424 INF: FPGA: Recv YRDPOS 148171
17-03-18 02:00:54.798 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:00:54.798 -07 000000447 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:54.837 -07 000000447 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:00:54.837 -07 000000447 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:00:54.837 -07 000000447 INF: Y Motor: Moved to 72.3491 after 1479 ms (table move)
17-03-18 02:00:54.837 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173651 mm (DAC = 37934)
17-03-18 02:00:54.837 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:54.847 -07 000000444 INF: FPGA: Recv ZSGSRD 36323
17-03-18 02:00:54.847 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 02:00:54.847 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:54.847 -07 000000591 INF: FPGA: Recv ZSGSRD 36320
17-03-18 02:00:54.857 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:00:54.857 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:54.857 -07 000000591 INF: FPGA: Recv ZSGSRD 36320
17-03-18 02:00:54.867 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:54.867 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:54.867 -07 000000447 INF: FPGA: Recv ZSGSRD 36317
17-03-18 02:00:54.877 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:54.877 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:54.877 -07 000000437 INF: FPGA: Recv ZSGSRD 36318
17-03-18 02:00:54.887 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:54.887 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:54.887 -07 000000447 INF: FPGA: Recv ZSGSRD 36320
17-03-18 02:00:54.897 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:54.897 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:54.897 -07 000000461 INF: FPGA: Recv ZSGSRD 36321
17-03-18 02:00:54.907 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:54.907 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:54.907 -07 000000447 INF: FPGA: Recv ZSGSRD 36323
17-03-18 02:00:54.917 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:54.917 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:54.917 -07 000000437 INF: FPGA: Recv ZSGSRD 36320
17-03-18 02:00:54.927 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:54.927 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:54.927 -07 000000461 INF: FPGA: Recv ZSGSRD 36322
17-03-18 02:00:54.937 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:54.937 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:00:54.937 -07 000000461 INF: FPGA: Recv ZPIEZORD 32461
17-03-18 02:00:54.947 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:54.947 -07 000000569 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.788 V. Piezo Error = -8.5 V.
17-03-18 02:00:54.947 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36320 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36320 (-172.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36317 (-172.7 uncal um), Max = 36323 (-172.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:00:54.947 -07 000000569 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36320, posNoise = 3, negNoise = 3
17-03-18 02:00:54.947 -07 000000569 INF: Z Motor: After move to -0.173651, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:00:54.947 -07 000000569 INF: Z Motor: Settle wait time = 1485 ms, measure time = 101 ms (allowed 150 ms), total time = 1586 ms
17-03-18 02:00:54.947 -07 000000569 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 02:00:54.997 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1639 ms
17-03-18 02:00:54.997 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:00:54.997 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:00:54.997 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:00:54.997 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:00:54.997 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:00:54.997 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:00:54.997 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:00:54.997 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:00:54.997 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:00:55.007 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:00:55.007 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:00:55.007 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:00:55.007 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:00:55.017 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:00:55.057 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:00:55.357 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:00:55.357 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:00:55.357 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:00:55.367 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 613074248, 0x0, 559484976) start.
17-03-18 02:00:55.397 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:00:55.397 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 02:00:55.397 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:00:55.477 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 613074248, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 02:00:55.477 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:55.477 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:00:55.477 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 02:00:55.497 -07 000000461 INF: Autofocus start
17-03-18 02:00:55.497 -07 000000461 INF: MeasureProfile start
17-03-18 02:00:55.497 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:00:55.497 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:00:55.507 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:00:55.507 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:00:55.507 -07 000000461 INF: MeasureProfile done
17-03-18 02:00:55.507 -07 000000461 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:00:55.507 -07 000000461 INF: Autofocus finished
17-03-18 02:00:55.707 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:00:55.707 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:00:55.707 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173650736999893. ----------
17-03-18 02:00:55.717 -07 000000610 INF: Cycle	94	Tile	16	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:00:55.717 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36449, sync = True, waitForSettling = True)
17-03-18 02:00:55.717 -07 000000610 INF: Z Motor: Moving to -0.166853 mm, started at -0.173651 mm, distance = 6.80 um
17-03-18 02:00:55.717 -07 000000610 INF: FPGA: Xmit ZDACW 36449\n [Z Motor]
17-03-18 02:00:55.717 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:00:55.727 -07 000000610 INF: FPGA: 'ZDACW 36449' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:00:55.727 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:00:55.727 -07 000000569 INF: FPGA: Recv ZDACR 36449
17-03-18 02:00:55.737 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:55.737 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:00:55.887 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:55.887 -07 000000444 INF: FPGA: Recv ZSGSRD 35267
17-03-18 02:00:55.897 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:00:55.897 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:55.897 -07 000000444 INF: FPGA: Recv ZSGSRD 35262
17-03-18 02:00:55.907 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:55.907 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:55.907 -07 000000437 INF: FPGA: Recv ZSGSRD 35260
17-03-18 02:00:55.917 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:55.917 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:55.917 -07 000000447 INF: FPGA: Recv ZSGSRD 35258
17-03-18 02:00:55.927 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:55.927 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:55.927 -07 000000461 INF: FPGA: Recv ZSGSRD 35268
17-03-18 02:00:55.937 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:55.937 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:55.937 -07 000000444 INF: FPGA: Recv ZSGSRD 35267
17-03-18 02:00:55.947 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:55.947 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:55.947 -07 000000437 INF: FPGA: Recv ZSGSRD 35263
17-03-18 02:00:55.957 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:55.957 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:55.957 -07 000000447 INF: FPGA: Recv ZSGSRD 35263
17-03-18 02:00:55.967 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:55.967 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:55.967 -07 000000461 INF: FPGA: Recv ZSGSRD 35271
17-03-18 02:00:55.977 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:55.977 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:55.977 -07 000000591 INF: FPGA: Recv ZSGSRD 35269
17-03-18 02:00:55.987 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:55.987 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:00:55.987 -07 000000461 INF: FPGA: Recv ZPIEZORD 31022
17-03-18 02:00:55.997 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:55.997 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.562 V. Piezo Error = -9.3 V.
17-03-18 02:00:55.997 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35265 (-166.0 uncal um), Error = 0.8 uncal um, Median = 35265 (-166.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35258 (-166.0 uncal um), Max = 35271 (-166.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:00:55.997 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35265, posNoise = 6, negNoise = 7
17-03-18 02:00:55.997 -07 000000610 INF: Z Motor: After move to -0.166853, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:00:55.997 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:00:55.997 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:00:55.997 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:00:55.997 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:00:55.997 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:00:55.997 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:00:55.997 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:00:55.997 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:00:55.997 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:00:55.997 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:00:55.997 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:00:55.997 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:00:55.997 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:00:56.007 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:00:56.007 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:00:56.007 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:00:56.007 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:00:56.017 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:00:56.017 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:00:56.017 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 02:00:56.017 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:00:56.017 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36626 150\n [Camera]
17-03-18 02:00:56.217 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:00:56.477 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 3.981281,
17-03-18 02:00:56.517 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:00:56.517 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:00:56.617 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:00:56.617 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:00:56.617 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:00:56.617 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:00:56.617 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:00:56.617 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:00:56.617 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:00:56.617 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:00:56.617 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:00:56.617 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:00:56.807 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36626 777
17-03-18 02:00:56.957 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:00:57.017 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:00:57.017 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:00:57.017 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:57.017 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:00:57.017 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:00:57.017 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:57.017 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:00:57.017 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:00:57.027 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:00:57.027 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:00:57.147 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:00:57.147 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:00:57.147 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:00:57.147 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:00:57.147 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:00:57.147 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:00:57.147 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:00:57.147 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:00:57.147 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:00:57.147 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:00:57.337 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 02:00:57.337 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:00:57.337 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36626 150' command took 2 ms to send, 1304 ms to get response, and 1315 ms overall
17-03-18 02:00:57.337 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:00:57.337 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.166873193190335. ------
17-03-18 02:00:57.347 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17331 mm
17-03-18 02:00:57.347 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:00:57.347 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:00:57.347 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 02:00:57.347 -07 000000502 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 02:00:57.347 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:00:57.347 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 37859, sync = True, waitForSettling = False)
17-03-18 02:00:57.347 -07 000000444 INF: Z Motor: Moving to -0.173307 mm, started at -0.166873 mm, distance = -6.43 um
17-03-18 02:00:57.357 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:57.357 -07 000000444 INF: FPGA: Xmit ZDACW 37859\n [Z Motor]
17-03-18 02:00:57.357 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:00:57.367 -07 000000444 INF: FPGA: 'ZDACW 37859' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:00:57.367 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:57.367 -07 000000591 INF: FPGA: Recv YRDPOS 148171
17-03-18 02:00:57.377 -07 000000592 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:00:57.377 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:00:57.377 -07 000000502 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:57.377 -07 000000502 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:00:57.377 -07 000000502 INF: Y Motor: Moving 1350 steps-28
17-03-18 02:00:57.387 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:00:57.387 -07 000000569 INF: FPGA: Recv ZDACR 37859
17-03-18 02:00:57.397 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:00:57.397 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:00:57.397 -07 000000444 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 02:00:57.557 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:00:57.557 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:00:57.557 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:57.557 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 02:00:57.557 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:00:57.557 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:57.557 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:00:57.557 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 02:00:57.557 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:00:57.567 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:00:57.577 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:00:57.577 -07 000000592 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:00:57.767 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 02:00:57.767 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:00:57.817 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:57.817 -07 000000447 INF: FPGA: Recv YRDPOS 149864
17-03-18 02:00:57.827 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:00:57.827 -07 000000502 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:57.827 -07 000000502 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 02:00:57.827 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.125 mm/sec
17-03-18 02:00:58.777 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:00:58.777 -07 000000592 INF: FPGA: Recv YRDPOS 149864
17-03-18 02:00:58.787 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:00:58.787 -07 000000502 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:00:58.807 -07 000000502 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:00:58.807 -07 000000502 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:00:58.807 -07 000000502 INF: Y Motor: Moved to 73.1758 after 1463 ms (table move)
17-03-18 02:00:58.817 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173307 mm (DAC = 37859)
17-03-18 02:00:58.817 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:58.817 -07 000000437 INF: FPGA: Recv ZSGSRD 36266
17-03-18 02:00:58.827 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:58.827 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:58.827 -07 000000437 INF: FPGA: Recv ZSGSRD 36267
17-03-18 02:00:58.837 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:58.837 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:58.837 -07 000000437 INF: FPGA: Recv ZSGSRD 36272
17-03-18 02:00:58.847 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:58.847 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:58.847 -07 000000437 INF: FPGA: Recv ZSGSRD 36268
17-03-18 02:00:58.857 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:58.857 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:58.857 -07 000000437 INF: FPGA: Recv ZSGSRD 36268
17-03-18 02:00:58.867 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:58.867 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:58.867 -07 000000585 INF: FPGA: Recv ZSGSRD 36269
17-03-18 02:00:58.877 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:58.877 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:58.877 -07 000000585 INF: FPGA: Recv ZSGSRD 36268
17-03-18 02:00:58.887 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:58.887 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:58.887 -07 000000437 INF: FPGA: Recv ZSGSRD 36263
17-03-18 02:00:58.897 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:58.897 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:58.897 -07 000000437 INF: FPGA: Recv ZSGSRD 36264
17-03-18 02:00:58.907 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:58.907 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:58.907 -07 000000569 INF: FPGA: Recv ZSGSRD 36267
17-03-18 02:00:58.917 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:58.917 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:00:58.917 -07 000000437 INF: FPGA: Recv ZPIEZORD 32417
17-03-18 02:00:58.927 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:58.927 -07 000000561 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.777 V. Piezo Error = -8.5 V.
17-03-18 02:00:58.927 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36267 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36268 (-172.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36263 (-172.4 uncal um), Max = 36272 (-172.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:00:58.927 -07 000000561 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36267, posNoise = 5, negNoise = 4
17-03-18 02:00:58.927 -07 000000561 INF: Z Motor: After move to -0.173307, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:00:58.927 -07 000000561 INF: Z Motor: Settle wait time = 1465 ms, measure time = 110 ms (allowed 150 ms), total time = 1575 ms
17-03-18 02:00:58.927 -07 000000561 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:00:58.967 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 02:00:58.967 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:00:58.967 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:00:58.967 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:00:58.967 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:00:58.967 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:00:58.967 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:00:58.967 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:00:58.967 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:00:58.967 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:00:58.977 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:00:58.977 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:00:58.987 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 02:00:58.987 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 02:00:58.987 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:00:59.026 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:00:59.326 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:00:59.326 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:00:59.336 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:00:59.336 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 644204472, 0x0, 559484976) start.
17-03-18 02:00:59.366 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:00:59.366 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 02:00:59.366 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-18 02:00:59.456 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 644204472, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:00:59.456 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:00:59.466 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:00:59.466 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 02:00:59.566 -07 000000585 INF: Autofocus start
17-03-18 02:00:59.566 -07 000000585 INF: MeasureProfile start
17-03-18 02:00:59.566 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:00:59.566 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:00:59.576 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:00:59.576 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:00:59.576 -07 000000585 INF: MeasureProfile done
17-03-18 02:00:59.576 -07 000000585 INF: X=48  Z correction [um]=0.1739867
17-03-18 02:00:59.576 -07 000000585 INF: Autofocus finished
17-03-18 02:00:59.776 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:00:59.776 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 02:00:59.786 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.17331025375638. ----------
17-03-18 02:00:59.786 -07 000000610 INF: Cycle	94	Tile	17	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:00:59.786 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36410, sync = True, waitForSettling = True)
17-03-18 02:00:59.786 -07 000000610 INF: Z Motor: Moving to -0.166674 mm, started at -0.173310 mm, distance = 6.64 um
17-03-18 02:00:59.786 -07 000000610 INF: FPGA: Xmit ZDACW 36410\n [Z Motor]
17-03-18 02:00:59.786 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 02:00:59.796 -07 000000610 INF: FPGA: 'ZDACW 36410' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:00:59.796 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:00:59.796 -07 000000561 INF: FPGA: Recv ZDACR 36410
17-03-18 02:00:59.806 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:59.806 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:00:59.956 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:59.956 -07 000000585 INF: FPGA: Recv ZSGSRD 35236
17-03-18 02:00:59.966 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:00:59.966 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:59.966 -07 000000569 INF: FPGA: Recv ZSGSRD 35234
17-03-18 02:00:59.976 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:59.976 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:59.976 -07 000000437 INF: FPGA: Recv ZSGSRD 35235
17-03-18 02:00:59.986 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:59.986 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:59.986 -07 000000561 INF: FPGA: Recv ZSGSRD 35235
17-03-18 02:00:59.996 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:00:59.996 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:00:59.996 -07 000000437 INF: FPGA: Recv ZSGSRD 35233
17-03-18 02:01:00.006 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:00.006 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:00.006 -07 000000569 INF: FPGA: Recv ZSGSRD 35239
17-03-18 02:01:00.016 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:00.016 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:00.016 -07 000000437 INF: FPGA: Recv ZSGSRD 35239
17-03-18 02:01:00.026 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:00.026 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:00.026 -07 000000569 INF: FPGA: Recv ZSGSRD 35233
17-03-18 02:01:00.036 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:00.036 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:00.036 -07 000000569 INF: FPGA: Recv ZSGSRD 35236
17-03-18 02:01:00.046 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:00.046 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:00.046 -07 000000437 INF: FPGA: Recv ZSGSRD 35236
17-03-18 02:01:00.056 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:00.056 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:01:00.056 -07 000000569 INF: FPGA: Recv ZPIEZORD 31030
17-03-18 02:01:00.066 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:00.066 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.556 V. Piezo Error = -9.3 V.
17-03-18 02:01:00.066 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35236 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35236 (-165.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35233 (-165.8 uncal um), Max = 35239 (-165.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:01:00.066 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35236, posNoise = 3, negNoise = 3
17-03-18 02:01:00.066 -07 000000610 INF: Z Motor: After move to -0.166674, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:01:00.066 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:01:00.066 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:01:00.066 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:01:00.066 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:01:00.066 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:01:00.066 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:01:00.066 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:01:00.066 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:01:00.066 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:01:00.066 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:01:00.066 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:01:00.066 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:01:00.066 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:01:00.076 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:01:00.076 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:01:00.076 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:01:00.076 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:01:00.076 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:01:00.076 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:01:00.076 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:01:00.086 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:01:00.086 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36587 150\n [Camera]
17-03-18 02:01:00.286 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:01:00.676 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:01:00.676 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:01:00.676 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:01:00.676 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:01:00.676 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:01:00.676 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:01:00.676 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:01:00.676 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:01:00.676 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:01:00.676 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:01:00.866 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36587 777
17-03-18 02:01:01.016 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:01:01.076 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:01:01.076 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:01:01.076 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:01.076 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:01:01.076 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:01:01.076 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:01.086 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:01:01.086 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:01:01.086 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:01:01.096 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:01:01.206 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:01:01.206 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:01:01.206 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:01:01.206 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:01:01.206 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 02:01:01.206 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:01:01.206 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:01:01.216 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:01:01.216 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:01:01.216 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 02:01:01.396 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 02:01:01.406 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:01:01.406 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36587 150' command took 2 ms to send, 1310 ms to get response, and 1317 ms overall
17-03-18 02:01:01.406 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:01:01.406 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.166686891038224. ------
17-03-18 02:01:01.406 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:01:01.406 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17313 mm
17-03-18 02:01:01.406 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:01:01.416 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 02:01:01.416 -07 000000462 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-18 02:01:01.416 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:01:01.416 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:01:01.416 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:01.416 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 37820, sync = True, waitForSettling = False)
17-03-18 02:01:01.416 -07 000000512 INF: Z Motor: Moving to -0.173129 mm, started at -0.166687 mm, distance = -6.44 um
17-03-18 02:01:01.416 -07 000000579 INF: FPGA: Recv YRDPOS 149864
17-03-18 02:01:01.426 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:01.426 -07 000000512 INF: FPGA: Xmit ZDACW 37820\n [Z Motor]
17-03-18 02:01:01.426 -07 000000462 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:01.426 -07 000000462 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:01:01.426 -07 000000462 INF: Y Motor: Moving 1355 steps-34
17-03-18 02:01:01.426 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 02:01:01.436 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:01:01.436 -07 000000512 INF: FPGA: 'ZDACW 37820' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:01:01.446 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:01:01.456 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:01:01.456 -07 000000437 INF: FPGA: Recv ZDACR 37820
17-03-18 02:01:01.466 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:01:01.466 -07 000000512 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 02:01:01.526 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:01:01.526 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:01:01.606 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:01:01.606 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:01:01.606 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:01.616 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:01:01.616 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:01:01.616 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:01.616 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:01:01.616 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:01:01.616 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:01:01.626 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:01:01.636 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:01:01.636 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 02:01:01.816 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 02:01:01.816 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-18 02:01:01.836 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 3.99219,
17-03-18 02:01:01.876 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:01.876 -07 000000611 INF: FPGA: Recv YRDPOS 151568
17-03-18 02:01:01.886 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 02:01:01.886 -07 000000462 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:01.886 -07 000000462 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 02:01:01.886 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.847 mm, average velocity = 2.128 mm/sec
17-03-18 02:01:02.836 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:02.836 -07 000000512 INF: FPGA: Recv YRDPOS 151568
17-03-18 02:01:02.846 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:02.846 -07 000000462 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:02.866 -07 000000462 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:01:02.866 -07 000000462 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:01:02.866 -07 000000462 INF: Y Motor: Moved to 74.0078 after 1451 ms (table move)
17-03-18 02:01:02.866 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173129 mm (DAC = 37820)
17-03-18 02:01:02.866 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:02.866 -07 000000579 INF: FPGA: Recv ZSGSRD 36246
17-03-18 02:01:02.876 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:01:02.876 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:02.876 -07 000000579 INF: FPGA: Recv ZSGSRD 36239
17-03-18 02:01:02.886 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:02.886 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:02.886 -07 000000579 INF: FPGA: Recv ZSGSRD 36248
17-03-18 02:01:02.896 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:02.896 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:02.896 -07 000000579 INF: FPGA: Recv ZSGSRD 36235
17-03-18 02:01:02.906 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:02.906 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:02.906 -07 000000579 INF: FPGA: Recv ZSGSRD 36233
17-03-18 02:01:02.916 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:02.916 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:02.916 -07 000000579 INF: FPGA: Recv ZSGSRD 36243
17-03-18 02:01:02.926 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:02.926 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:02.926 -07 000000579 INF: FPGA: Recv ZSGSRD 36245
17-03-18 02:01:02.936 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:02.936 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:02.936 -07 000000579 INF: FPGA: Recv ZSGSRD 36247
17-03-18 02:01:02.946 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:02.946 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:02.946 -07 000000579 INF: FPGA: Recv ZSGSRD 36240
17-03-18 02:01:02.956 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:02.956 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:02.956 -07 000000579 INF: FPGA: Recv ZSGSRD 36244
17-03-18 02:01:02.966 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:02.966 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:01:02.966 -07 000000579 INF: FPGA: Recv ZPIEZORD 32384
17-03-18 02:01:02.976 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:02.976 -07 000000561 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.771 V. Piezo Error = -8.5 V.
17-03-18 02:01:02.976 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36242 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36244 (-172.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36233 (-172.2 uncal um), Max = 36248 (-172.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:01:02.976 -07 000000561 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36242, posNoise = 6, negNoise = 9
17-03-18 02:01:02.976 -07 000000561 INF: Z Motor: After move to -0.173129, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:01:02.976 -07 000000561 INF: Z Motor: Settle wait time = 1454 ms, measure time = 104 ms (allowed 150 ms), total time = 1558 ms
17-03-18 02:01:02.976 -07 000000561 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 02:01:03.026 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 02:01:03.026 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:01:03.026 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:01:03.026 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:01:03.026 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:01:03.026 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:01:03.026 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:01:03.026 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:01:03.036 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:01:03.036 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:01:03.036 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:01:03.036 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:01:03.046 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:01:03.046 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:01:03.046 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:01:03.086 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:01:03.385 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:01:03.385 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:01:03.385 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:01:03.385 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 663285856, 0x0, 559484976) start.
17-03-18 02:01:03.425 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:01:03.425 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 02:01:03.425 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:01:03.505 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 663285856, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:01:03.505 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:03.505 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:01:03.505 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:01:03.525 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:01:03.525 -07 000000579 INF: Autofocus start
17-03-18 02:01:03.525 -07 000000579 INF: MeasureProfile start
17-03-18 02:01:03.535 -07 000000579 INF: MeasureProfile done
17-03-18 02:01:03.535 -07 000000579 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:01:03.535 -07 000000579 INF: Autofocus finished
17-03-18 02:01:03.545 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:01:03.545 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 10 ms to get response, and 14 ms overall
17-03-18 02:01:03.545 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:01:03.745 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:01:03.745 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 02:01:03.755 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.173149648452836. ----------
17-03-18 02:01:03.755 -07 000000610 INF: Cycle	94	Tile	18	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:01:03.755 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36317, sync = True, waitForSettling = True)
17-03-18 02:01:03.755 -07 000000610 INF: Z Motor: Moving to -0.166249 mm, started at -0.173150 mm, distance = 6.90 um
17-03-18 02:01:03.765 -07 000000610 INF: FPGA: Xmit ZDACW 36317\n [Z Motor]
17-03-18 02:01:03.765 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:01:03.775 -07 000000610 INF: FPGA: 'ZDACW 36317' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:01:03.775 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:01:03.775 -07 000000561 INF: FPGA: Recv ZDACR 36317
17-03-18 02:01:03.785 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:03.785 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:01:03.935 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:03.935 -07 000000561 INF: FPGA: Recv ZSGSRD 35173
17-03-18 02:01:03.945 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:01:03.945 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:03.945 -07 000000591 INF: FPGA: Recv ZSGSRD 35161
17-03-18 02:01:03.955 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:03.955 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:03.955 -07 000000591 INF: FPGA: Recv ZSGSRD 35161
17-03-18 02:01:03.965 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:03.965 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:03.965 -07 000000561 INF: FPGA: Recv ZSGSRD 35173
17-03-18 02:01:03.975 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:03.975 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:03.975 -07 000000591 INF: FPGA: Recv ZSGSRD 35172
17-03-18 02:01:03.985 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:03.985 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:03.985 -07 000000561 INF: FPGA: Recv ZSGSRD 35167
17-03-18 02:01:03.995 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:03.995 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:03.995 -07 000000591 INF: FPGA: Recv ZSGSRD 35168
17-03-18 02:01:04.005 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:04.005 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:04.005 -07 000000561 INF: FPGA: Recv ZSGSRD 35167
17-03-18 02:01:04.015 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:04.015 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:04.015 -07 000000591 INF: FPGA: Recv ZSGSRD 35171
17-03-18 02:01:04.025 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:04.025 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:04.025 -07 000000591 INF: FPGA: Recv ZSGSRD 35166
17-03-18 02:01:04.035 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:04.035 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:01:04.035 -07 000000461 INF: FPGA: Recv ZPIEZORD 30916
17-03-18 02:01:04.045 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:04.045 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.542 V. Piezo Error = -9.4 V.
17-03-18 02:01:04.045 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35168 (-165.4 uncal um), Error = 0.9 uncal um, Median = 35168 (-165.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35161 (-165.3 uncal um), Max = 35173 (-165.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:01:04.045 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35168, posNoise = 5, negNoise = 7
17-03-18 02:01:04.045 -07 000000610 INF: Z Motor: After move to -0.166249, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:01:04.045 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:01:04.045 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:01:04.045 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:01:04.045 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:01:04.045 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:01:04.045 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:01:04.045 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:01:04.045 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:01:04.045 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:01:04.045 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:01:04.045 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:01:04.045 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:01:04.045 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:01:04.055 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:01:04.055 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:01:04.055 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:01:04.055 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:01:04.065 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:01:04.065 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:01:04.065 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:01:04.065 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:01:04.075 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36494 150\n [Camera]
17-03-18 02:01:04.265 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:01:04.665 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:01:04.665 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:01:04.665 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:01:04.665 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:01:04.665 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 02:01:04.665 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:01:04.665 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:01:04.665 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:01:04.665 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:01:04.665 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 02:01:04.855 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36494 777
17-03-18 02:01:05.005 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:01:05.065 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:01:05.065 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:01:05.065 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:05.075 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 02:01:05.075 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:01:05.075 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:01:05.075 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:01:05.075 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:05.075 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:01:05.085 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:01:05.195 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:01:05.195 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:01:05.195 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:01:05.195 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:01:05.195 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 02:01:05.195 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:01:05.195 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:01:05.195 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:01:05.195 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:01:05.195 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 02:01:05.385 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 02:01:05.385 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:01:05.385 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36494 150' command took 2 ms to send, 1305 ms to get response, and 1315 ms overall
17-03-18 02:01:05.385 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:01:05.385 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.166250044612584. ------
17-03-18 02:01:05.385 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:01:05.395 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17221 mm
17-03-18 02:01:05.395 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:01:05.395 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:01:05.395 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 02:01:05.395 -07 000000502 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 02:01:05.395 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 37619, sync = True, waitForSettling = False)
17-03-18 02:01:05.395 -07 000000561 INF: Z Motor: Moving to -0.172209 mm, started at -0.166250 mm, distance = -5.96 um
17-03-18 02:01:05.405 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:01:05.405 -07 000000561 INF: FPGA: Xmit ZDACW 37619\n [Z Motor]
17-03-18 02:01:05.405 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:01:05.415 -07 000000561 INF: FPGA: 'ZDACW 37619' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:01:05.415 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:05.415 -07 000000579 INF: FPGA: Recv YRDPOS 151568
17-03-18 02:01:05.425 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:01:05.425 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:01:05.425 -07 000000502 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:05.425 -07 000000502 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:01:05.425 -07 000000502 INF: Y Motor: Moving 1352 steps-30
17-03-18 02:01:05.435 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:01:05.435 -07 000000579 INF: FPGA: Recv ZDACR 37619
17-03-18 02:01:05.445 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:01:05.445 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:01:05.445 -07 000000561 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 02:01:05.585 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 02:01:05.585 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:01:05.585 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:05.595 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:01:05.595 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:01:05.595 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:05.595 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:01:05.595 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:01:05.595 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:01:05.595 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:01:05.625 -07 000000592 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:01:05.625 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:01:06.415 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 02:01:06.415 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 964 ms to get response, and 993 ms overall
17-03-18 02:01:06.445 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:06.445 -07 000000424 INF: FPGA: Recv YRDPOS 153255
17-03-18 02:01:06.455 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:01:06.455 -07 000000502 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:06.455 -07 000000502 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-18 02:01:06.455 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 993 ms, distance = 0.845 mm, average velocity = 0.851 mm/sec
17-03-18 02:01:06.515 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:01:06.515 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:01:07.195 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 4.020806,
17-03-18 02:01:07.404 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:07.404 -07 000000447 INF: FPGA: Recv YRDPOS 153255
17-03-18 02:01:07.414 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:07.414 -07 000000502 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:07.434 -07 000000502 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:01:07.434 -07 000000502 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:01:07.434 -07 000000502 INF: Y Motor: Moved to 74.8315 after 2041 ms (table move)
17-03-18 02:01:07.444 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172209 mm (DAC = 37619)
17-03-18 02:01:07.444 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:07.444 -07 000000591 INF: FPGA: Recv ZSGSRD 36101
17-03-18 02:01:07.454 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:07.454 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:07.454 -07 000000579 INF: FPGA: Recv ZSGSRD 36098
17-03-18 02:01:07.464 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:07.464 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:07.464 -07 000000424 INF: FPGA: Recv ZSGSRD 36094
17-03-18 02:01:07.474 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:07.474 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:07.474 -07 000000502 INF: FPGA: Recv ZSGSRD 36096
17-03-18 02:01:07.484 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:07.484 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:07.484 -07 000000424 INF: FPGA: Recv ZSGSRD 36103
17-03-18 02:01:07.494 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:07.494 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:07.494 -07 000000502 INF: FPGA: Recv ZSGSRD 36096
17-03-18 02:01:07.504 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:07.504 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:07.504 -07 000000447 INF: FPGA: Recv ZSGSRD 36096
17-03-18 02:01:07.514 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:07.514 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:07.514 -07 000000502 INF: FPGA: Recv ZSGSRD 36097
17-03-18 02:01:07.524 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:07.524 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:07.524 -07 000000447 INF: FPGA: Recv ZSGSRD 36099
17-03-18 02:01:07.534 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:07.534 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:07.534 -07 000000502 INF: FPGA: Recv ZSGSRD 36097
17-03-18 02:01:07.544 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:07.544 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:01:07.544 -07 000000579 INF: FPGA: Recv ZPIEZORD 32166
17-03-18 02:01:07.554 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:07.554 -07 000000461 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.740 V. Piezo Error = -8.7 V.
17-03-18 02:01:07.554 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36098 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36097 (-171.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36094 (-171.3 uncal um), Max = 36103 (-171.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:01:07.554 -07 000000461 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36098, posNoise = 5, negNoise = 4
17-03-18 02:01:07.554 -07 000000461 INF: Z Motor: After move to -0.172209, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:01:07.554 -07 000000461 INF: Z Motor: Settle wait time = 2044 ms, measure time = 110 ms (allowed 150 ms), total time = 2154 ms
17-03-18 02:01:07.554 -07 000000461 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:01:07.594 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2199 ms
17-03-18 02:01:07.594 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:01:07.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:01:07.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:01:07.594 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:01:07.594 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:01:07.594 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:01:07.594 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:01:07.594 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:01:07.594 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:01:07.604 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:01:07.604 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:01:07.604 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:01:07.604 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:01:07.614 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:01:07.654 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:01:07.954 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:01:07.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:01:07.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:01:07.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 02:01:07.994 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:01:07.994 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 02:01:07.994 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:01:08.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:01:08.084 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:08.084 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:01:08.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:01:08.194 -07 000000579 INF: Autofocus start
17-03-18 02:01:08.194 -07 000000579 INF: MeasureProfile start
17-03-18 02:01:08.194 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:01:08.194 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:01:08.204 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:01:08.204 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:01:08.204 -07 000000579 INF: MeasureProfile done
17-03-18 02:01:08.204 -07 000000579 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 02:01:08.204 -07 000000579 INF: Autofocus finished
17-03-18 02:01:08.404 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:01:08.404 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:01:08.404 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.172224561904422. ----------
17-03-18 02:01:08.404 -07 000000610 INF: Cycle	94	Tile	19	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:01:08.414 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36099, sync = True, waitForSettling = True)
17-03-18 02:01:08.414 -07 000000610 INF: Z Motor: Moving to -0.165251 mm, started at -0.172225 mm, distance = 6.97 um
17-03-18 02:01:08.414 -07 000000610 INF: FPGA: Xmit ZDACW 36099\n [Z Motor]
17-03-18 02:01:08.414 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 02:01:08.424 -07 000000610 INF: FPGA: 'ZDACW 36099' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:01:08.424 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:01:08.424 -07 000000502 INF: FPGA: Recv ZDACR 36099
17-03-18 02:01:08.434 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:08.434 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:01:08.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:08.584 -07 000000424 INF: FPGA: Recv ZSGSRD 35015
17-03-18 02:01:08.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:01:08.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:08.594 -07 000000461 INF: FPGA: Recv ZSGSRD 35011
17-03-18 02:01:08.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:08.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:08.604 -07 000000512 INF: FPGA: Recv ZSGSRD 35009
17-03-18 02:01:08.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:08.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:08.614 -07 000000579 INF: FPGA: Recv ZSGSRD 35013
17-03-18 02:01:08.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:08.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:08.624 -07 000000447 INF: FPGA: Recv ZSGSRD 35015
17-03-18 02:01:08.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:08.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:08.634 -07 000000579 INF: FPGA: Recv ZSGSRD 35012
17-03-18 02:01:08.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:08.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:08.644 -07 000000512 INF: FPGA: Recv ZSGSRD 35015
17-03-18 02:01:08.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:08.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:08.654 -07 000000591 INF: FPGA: Recv ZSGSRD 35015
17-03-18 02:01:08.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:08.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:08.664 -07 000000424 INF: FPGA: Recv ZSGSRD 35014
17-03-18 02:01:08.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:08.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:08.674 -07 000000502 INF: FPGA: Recv ZSGSRD 35013
17-03-18 02:01:08.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:08.684 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:01:08.684 -07 000000424 INF: FPGA: Recv ZPIEZORD 30712
17-03-18 02:01:08.694 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:08.694 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.508 V. Piezo Error = -9.5 V.
17-03-18 02:01:08.694 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.3 um, Read 10 ADC samples: Avg = 35013 (-164.4 uncal um), Error = 0.9 uncal um, Median = 35014 (-164.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35009 (-164.4 uncal um), Max = 35015 (-164.4 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:01:08.694 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35013, posNoise = 2, negNoise = 4
17-03-18 02:01:08.694 -07 000000610 INF: Z Motor: After move to -0.165251, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:01:08.694 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:01:08.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:01:08.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:01:08.694 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:01:08.694 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:01:08.694 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:01:08.694 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:01:08.694 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:01:08.694 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:01:08.694 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:01:08.694 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:01:08.694 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:01:08.694 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:01:08.704 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:01:08.704 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:01:08.704 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:01:08.704 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:01:08.714 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 02:01:08.714 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:01:08.714 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 02:01:08.714 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:01:08.714 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 36276 150\n [Camera]
17-03-18 02:01:08.914 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:01:09.314 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:01:09.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:01:09.314 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:01:09.314 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:01:09.314 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 02:01:09.314 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:01:09.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:01:09.314 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:01:09.314 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:01:09.314 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 02:01:09.504 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36276 777
17-03-18 02:01:09.654 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:01:09.694 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 02:01:09.694 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:01:09.694 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:09.704 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 02:01:09.704 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:01:09.704 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:09.704 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:01:09.704 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:01:09.704 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:01:09.714 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:01:09.844 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:01:09.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:01:09.844 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:01:09.844 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:01:09.844 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 02:01:09.844 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:01:09.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:01:09.844 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:01:09.844 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:01:09.844 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 02:01:10.034 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 02:01:10.034 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:01:10.034 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 36276 150' command took 2 ms to send, 1304 ms to get response, and 1315 ms overall
17-03-18 02:01:10.244 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 02:01:10.244 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:01:10.244 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:10.254 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 02:01:10.254 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:01:10.254 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:10.254 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:01:10.254 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:01:10.254 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 02:01:10.254 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 02:01:10.264 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:01:10.304 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 02:01:10.304 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 02:01:10.344 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 43 ms.
17-03-18 02:01:10.344 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 02:01:10.344 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 02:01:10.344 -07 000000502 INF: FPGA: Recv EMCUR 
17-03-18 02:01:10.354 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:01:10.354 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 02:01:10.854 -07 000000461 INF: FPGA: Recv EMIN
17-03-18 02:01:10.854 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 02:01:10.854 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 02:01:10.854 -07 000000579 INF: FPGA: Recv EMCUR 
17-03-18 02:01:10.864 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:01:10.864 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:01:10.864 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.165254291730611. ------
17-03-18 02:01:10.864 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:01:10.864 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13995 mm
17-03-18 02:01:10.864 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:01:10.864 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:01:10.864 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 30572, sync = True, waitForSettling = False)
17-03-18 02:01:10.864 -07 000000444 INF: Z Motor: Moving to -0.139950 mm, started at -0.165254 mm, distance = 25.30 um
17-03-18 02:01:10.874 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:01:10.874 -07 000000444 INF: FPGA: Xmit ZDACW 30572\n [Z Motor]
17-03-18 02:01:10.874 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 02:01:10.874 -07 000000424 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-18 02:01:10.874 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:01:10.884 -07 000000444 INF: FPGA: 'ZDACW 30572' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:01:10.884 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:10.884 -07 000000591 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:01:10.894 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:01:10.894 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:01:10.894 -07 000000424 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:10.894 -07 000000424 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 02:01:10.894 -07 000000424 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 02:01:10.904 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:01:10.904 -07 000000591 INF: FPGA: Recv ZDACR 30572
17-03-18 02:01:10.914 -07 000000424 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 02:01:10.914 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:01:10.914 -07 000000444 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 02:01:11.094 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:01:11.094 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:01:11.513 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:01:11.513 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:01:12.533 -07 000000629 INF: FPGA: Recv YMVTO 122703 23903
17-03-18 02:01:12.533 -07 000000424 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1643 ms overall
17-03-18 02:01:12.533 -07 000000424 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 02:01:12.533 -07 000000424 INF: Y Motor: To move from 74.832 to 59.913 (-14.919 mm) should take 23871 steps, but required 23903 steps (14.939 mm). Slippage = 0.020 mm (0.00%).
17-03-18 02:01:12.533 -07 000000424 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1643 ms, distance = 14.919 mm, average velocity = 9.080 mm/sec
17-03-18 02:01:12.553 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 4.024884,
17-03-18 02:01:15.383 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:15.383 -07 000000611 INF: FPGA: Recv YRDPOS 122698
17-03-18 02:01:15.393 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:01:15.393 -07 000000424 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:15.423 -07 000000424 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:01:15.423 -07 000000424 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-18 02:01:15.423 -07 000000424 INF: Y Motor: Moved to 59.9111 after 4556 ms
17-03-18 02:01:15.433 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139950 mm (DAC = 30572)
17-03-18 02:01:15.433 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:15.433 -07 000000424 INF: FPGA: Recv ZSGSRD 31080
17-03-18 02:01:15.443 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:15.443 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:16.412 -07 000000561 INF: FPGA: Recv ZSGSRD 31073
17-03-18 02:01:16.412 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 960 ms to get response, and 970 ms overall
17-03-18 02:01:16.412 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:16.412 -07 000000561 INF: FPGA: Recv ZSGSRD 31079
17-03-18 02:01:16.422 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:16.422 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:16.422 -07 000000561 INF: FPGA: Recv ZSGSRD 31078
17-03-18 02:01:16.432 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:16.432 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:16.432 -07 000000561 INF: FPGA: Recv ZSGSRD 31071
17-03-18 02:01:16.442 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:16.442 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:16.442 -07 000000561 INF: FPGA: Recv ZSGSRD 31080
17-03-18 02:01:16.452 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:16.452 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:16.452 -07 000000561 INF: FPGA: Recv ZSGSRD 31085
17-03-18 02:01:16.462 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:16.462 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:16.462 -07 000000561 INF: FPGA: Recv ZSGSRD 31070
17-03-18 02:01:16.472 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:16.472 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:16.472 -07 000000561 INF: FPGA: Recv ZSGSRD 31078
17-03-18 02:01:16.482 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:16.482 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:16.482 -07 000000561 INF: FPGA: Recv ZSGSRD 31071
17-03-18 02:01:16.492 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:16.492 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:01:16.492 -07 000000561 INF: FPGA: Recv ZPIEZORD 26620
17-03-18 02:01:16.502 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:16.502 -07 000000579 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.665 V. Piezo Error = -9.8 V.
17-03-18 02:01:16.502 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.9 um, Read 10 ADC samples: Avg = 31076 (-139.2 uncal um), Error = 0.8 uncal um, Median = 31078 (-139.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 31070 (-139.1 uncal um), Max = 31085 (-139.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:01:16.502 -07 000000579 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31076, posNoise = 9, negNoise = 6
17-03-18 02:01:16.502 -07 000000579 INF: Z Motor: After move to -0.139950, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:01:16.502 -07 000000579 INF: Z Motor: Settle wait time = 4560 ms, measure time = 1072 ms (allowed 150 ms), total time = 5632 ms
17-03-18 02:01:16.502 -07 000000579 INF: Z Motor: Warning: Actual position measuring time = 1072 ms, longer than max expected time of 150 ms
17-03-18 02:01:16.502 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 5635 ms
17-03-18 02:01:16.502 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:01:16.502 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:01:16.502 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:01:16.512 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:01:16.512 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:01:16.512 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:01:16.512 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:01:16.512 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:01:16.512 -07 000000579 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 02:01:16.512 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:01:16.512 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:01:16.532 -07 000000579 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-18 02:01:16.532 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:01:16.532 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:01:16.532 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:01:16.542 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:01:16.542 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms.
17-03-18 02:01:16.542 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:01:16.592 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:01:16.892 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:01:16.892 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:01:16.892 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:01:16.892 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-18 02:01:16.932 -07 000000592 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:01:16.932 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 02:01:16.932 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 385 ms overall
17-03-18 02:01:17.012 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:01:17.012 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:17.022 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:01:17.022 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:01:17.032 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:01:17.032 -07 000000591 INF: Image SNR check: start
17-03-18 02:01:17.032 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:01:17.042 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:01:17.042 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:01:17.042 -07 000000591 INF: Image SNR check: pass  [peak (Max-Min)=151.73]
17-03-18 02:01:17.042 -07 000000591 INF: Autofocus start
17-03-18 02:01:17.042 -07 000000591 INF: MeasureProfile start
17-03-18 02:01:17.062 -07 000000591 INF: MeasureProfile done
17-03-18 02:01:17.062 -07 000000591 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:01:17.062 -07 000000591 INF: Autofocus finished
17-03-18 02:01:17.242 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:01:17.242 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:01:17.242 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.139962168528498. ----------
17-03-18 02:01:17.242 -07 000000610 INF: Cycle	94	Tile	1	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:01:17.252 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29067, sync = True, waitForSettling = True)
17-03-18 02:01:17.252 -07 000000610 INF: Z Motor: Moving to -0.133060 mm, started at -0.139962 mm, distance = 6.90 um
17-03-18 02:01:17.252 -07 000000610 INF: FPGA: Xmit ZDACW 29067\n [Z Motor]
17-03-18 02:01:17.252 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:01:17.262 -07 000000610 INF: FPGA: 'ZDACW 29067' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:01:17.262 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:01:17.262 -07 000000592 INF: FPGA: Recv ZDACR 29067
17-03-18 02:01:17.272 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:17.272 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:01:17.422 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:17.422 -07 000000569 INF: FPGA: Recv ZSGSRD 30002
17-03-18 02:01:17.432 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:01:17.432 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:17.432 -07 000000585 INF: FPGA: Recv ZSGSRD 30002
17-03-18 02:01:17.442 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:17.442 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:17.442 -07 000000591 INF: FPGA: Recv ZSGSRD 30001
17-03-18 02:01:17.452 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:17.452 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:17.452 -07 000000444 INF: FPGA: Recv ZSGSRD 29999
17-03-18 02:01:17.462 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:17.462 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:17.462 -07 000000569 INF: FPGA: Recv ZSGSRD 30005
17-03-18 02:01:17.472 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:17.472 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:17.472 -07 000000579 INF: FPGA: Recv ZSGSRD 30006
17-03-18 02:01:17.482 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:17.482 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:17.482 -07 000000561 INF: FPGA: Recv ZSGSRD 29997
17-03-18 02:01:17.492 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:17.492 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:17.492 -07 000000592 INF: FPGA: Recv ZSGSRD 30008
17-03-18 02:01:17.502 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:17.502 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:17.502 -07 000000591 INF: FPGA: Recv ZSGSRD 30005
17-03-18 02:01:17.512 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:17.512 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:17.512 -07 000000585 INF: FPGA: Recv ZSGSRD 30002
17-03-18 02:01:17.522 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:17.522 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:01:17.522 -07 000000561 INF: FPGA: Recv ZPIEZORD 25474
17-03-18 02:01:17.532 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:17.532 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.435 V. Piezo Error = -9.9 V.
17-03-18 02:01:17.532 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30003 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30002 (-132.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29997 (-132.2 uncal um), Max = 30008 (-132.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:01:17.532 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30003, posNoise = 5, negNoise = 6
17-03-18 02:01:17.532 -07 000000610 INF: Z Motor: After move to -0.133060, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:01:17.532 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:01:17.532 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:01:17.532 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:01:17.532 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:01:17.532 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:01:17.532 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:01:17.532 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:01:17.532 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:01:17.532 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:01:17.532 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 02:01:17.532 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:01:17.532 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-18 02:01:17.532 -07 000000561 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 02:01:17.542 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:01:17.542 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:01:17.552 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:01:17.552 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:01:17.562 -07 000000561 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 02:01:17.562 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:01:17.562 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:01:17.562 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:01:17.572 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 02:01:17.572 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-18 02:01:17.572 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 29244 150\n [Camera]
17-03-18 02:01:17.772 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:01:17.912 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 4.030322,
17-03-18 02:01:18.162 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:01:18.162 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:01:18.172 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:01:18.172 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:01:18.172 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 02:01:18.562 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 02:01:18.572 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:01:18.572 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:18.572 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:01:18.572 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:01:18.582 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:01:18.582 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29244 777
17-03-18 02:01:18.582 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:01:18.582 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:01:18.582 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:01:18.582 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:01:18.582 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 02:01:18.982 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:01:18.982 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:01:18.982 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:18.982 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:01:18.992 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 02:01:19.911 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:01:19.911 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:01:19.911 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 02:01:19.911 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:01:19.911 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 29244 150' command took 2 ms to send, 2320 ms to get response, and 2333 ms overall
17-03-18 02:01:19.911 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:01:19.911 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:01:19.911 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:01:20.051 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:01:20.051 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 02:01:20.051 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:01:20.051 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.133068988900389. ------
17-03-18 02:01:20.451 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 02:01:20.451 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:01:20.451 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:20.451 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:01:20.451 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 546 ms.
17-03-18 02:01:20.461 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:01:20.471 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:01:20.471 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:01:20.871 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 02:01:20.871 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:01:20.871 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:20.871 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:01:20.881 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 02:01:20.891 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:01:21.411 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13932 mm
17-03-18 02:01:21.411 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:01:22.411 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:01:22.411 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:01:22.411 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1512 ms to get response, and 1519 ms overall
17-03-18 02:01:22.411 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:01:22.411 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:01:22.411 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 02:01:22.411 -07 000000502 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-18 02:01:22.421 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:23.411 -07 000000608 INF: FPGA: Recv YRDPOS 122698
17-03-18 02:01:23.411 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:01:23.411 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 990 ms to get response, and 995 ms overall
17-03-18 02:01:23.411 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 980 ms to get response, and 994 ms overall
17-03-18 02:01:23.411 -07 000000502 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:23.411 -07 000000502 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:01:23.411 -07 000000502 INF: Y Motor: Moving 1330 steps2
17-03-18 02:01:23.411 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30435, sync = True, waitForSettling = False)
17-03-18 02:01:23.411 -07 000000608 INF: Z Motor: Moving to -0.139322 mm, started at -0.133069 mm, distance = -6.25 um
17-03-18 02:01:23.431 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:01:23.441 -07 000000608 INF: FPGA: Xmit ZDACW 30435\n [Z Motor]
17-03-18 02:01:23.441 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 02:01:23.451 -07 000000608 INF: FPGA: 'ZDACW 30435' command took 0 ms to send, 0 ms to get response, and 37 ms overall
17-03-18 02:01:23.471 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:01:23.471 -07 000000462 INF: FPGA: Recv ZDACR 30435
17-03-18 02:01:23.481 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:01:23.481 -07 000000608 INF: Z Motor: MoveAbsStepped took 67 ms (did NOT wait for settling yet))
17-03-18 02:01:23.721 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 4.000345,
17-03-18 02:01:23.801 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 02:01:23.801 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-18 02:01:23.841 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:23.841 -07 000000611 INF: FPGA: Recv YRDPOS 124381
17-03-18 02:01:23.851 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:01:23.851 -07 000000502 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:23.851 -07 000000502 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 02:01:23.851 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.831 mm, average velocity = 2.100 mm/sec
17-03-18 02:01:24.800 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:24.800 -07 000000447 INF: FPGA: Recv YRDPOS 124381
17-03-18 02:01:24.810 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:01:24.810 -07 000000502 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:24.830 -07 000000502 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:01:24.830 -07 000000502 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:01:24.830 -07 000000502 INF: Y Motor: Moved to 60.7329 after 2422 ms (table move)
17-03-18 02:01:24.840 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139322 mm (DAC = 30435)
17-03-18 02:01:24.840 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:24.840 -07 000000462 INF: FPGA: Recv ZSGSRD 30978
17-03-18 02:01:24.850 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:01:24.850 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:24.850 -07 000000424 INF: FPGA: Recv ZSGSRD 30983
17-03-18 02:01:24.860 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:24.860 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:24.860 -07 000000502 INF: FPGA: Recv ZSGSRD 30985
17-03-18 02:01:24.870 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:24.870 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:24.870 -07 000000611 INF: FPGA: Recv ZSGSRD 30985
17-03-18 02:01:24.880 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:24.880 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:24.880 -07 000000561 INF: FPGA: Recv ZSGSRD 30978
17-03-18 02:01:24.890 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:24.890 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:24.890 -07 000000462 INF: FPGA: Recv ZSGSRD 30978
17-03-18 02:01:24.900 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:24.900 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:24.900 -07 000000502 INF: FPGA: Recv ZSGSRD 30971
17-03-18 02:01:24.910 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:24.910 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:24.910 -07 000000608 INF: FPGA: Recv ZSGSRD 30967
17-03-18 02:01:24.920 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:24.920 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:24.920 -07 000000512 INF: FPGA: Recv ZSGSRD 30979
17-03-18 02:01:24.930 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:24.930 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:24.930 -07 000000447 INF: FPGA: Recv ZSGSRD 30980
17-03-18 02:01:24.940 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:24.940 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:01:24.940 -07 000000561 INF: FPGA: Recv ZPIEZORD 26849
17-03-18 02:01:24.950 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:24.950 -07 000000461 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.644 V. Piezo Error = -9.1 V.
17-03-18 02:01:24.950 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30978 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30978 (-138.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30967 (-138.5 uncal um), Max = 30985 (-138.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 02:01:24.950 -07 000000461 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30978, posNoise = 7, negNoise = 11
17-03-18 02:01:24.950 -07 000000461 INF: Z Motor: After move to -0.139322, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:01:24.950 -07 000000461 INF: Z Motor: Settle wait time = 1429 ms, measure time = 108 ms (allowed 150 ms), total time = 1537 ms
17-03-18 02:01:24.950 -07 000000461 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:01:25.000 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3588 ms
17-03-18 02:01:25.000 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:01:25.000 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:01:25.000 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:01:25.000 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:01:25.000 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:01:25.000 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:01:25.000 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:01:25.000 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:01:25.000 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:01:25.010 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:01:25.010 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:01:25.020 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:01:25.020 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:01:25.020 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:01:25.070 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:01:25.360 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:01:25.370 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:01:25.370 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:01:25.370 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) start.
17-03-18 02:01:25.400 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:01:25.410 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 02:01:25.410 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:01:25.490 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:01:25.490 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:25.500 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:01:25.500 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 02:01:25.510 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:01:25.510 -07 000000424 INF: Autofocus start
17-03-18 02:01:25.510 -07 000000424 INF: MeasureProfile start
17-03-18 02:01:25.510 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:01:25.520 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:01:25.520 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:01:25.520 -07 000000424 INF: MeasureProfile done
17-03-18 02:01:25.520 -07 000000424 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:01:25.520 -07 000000424 INF: Autofocus finished
17-03-18 02:01:25.720 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:01:25.720 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:01:25.720 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.139332595738606. ----------
17-03-18 02:01:25.720 -07 000000610 INF: Cycle	94	Tile	2	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:01:25.730 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28943, sync = True, waitForSettling = True)
17-03-18 02:01:25.730 -07 000000610 INF: Z Motor: Moving to -0.132493 mm, started at -0.139333 mm, distance = 6.84 um
17-03-18 02:01:25.730 -07 000000610 INF: FPGA: Xmit ZDACW 28943\n [Z Motor]
17-03-18 02:01:25.730 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:01:25.740 -07 000000610 INF: FPGA: 'ZDACW 28943' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:01:25.740 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:01:25.740 -07 000000461 INF: FPGA: Recv ZDACR 28943
17-03-18 02:01:25.750 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:25.750 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:01:25.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:25.900 -07 000000611 INF: FPGA: Recv ZSGSRD 29917
17-03-18 02:01:25.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:01:25.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:25.910 -07 000000561 INF: FPGA: Recv ZSGSRD 29915
17-03-18 02:01:25.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:25.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:25.920 -07 000000608 INF: FPGA: Recv ZSGSRD 29912
17-03-18 02:01:25.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:25.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:25.930 -07 000000462 INF: FPGA: Recv ZSGSRD 29909
17-03-18 02:01:25.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:25.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:25.940 -07 000000608 INF: FPGA: Recv ZSGSRD 29918
17-03-18 02:01:25.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:25.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:25.950 -07 000000461 INF: FPGA: Recv ZSGSRD 29913
17-03-18 02:01:25.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:25.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:25.960 -07 000000608 INF: FPGA: Recv ZSGSRD 29914
17-03-18 02:01:25.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:25.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:25.970 -07 000000424 INF: FPGA: Recv ZSGSRD 29912
17-03-18 02:01:25.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:25.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:25.980 -07 000000424 INF: FPGA: Recv ZSGSRD 29912
17-03-18 02:01:25.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:25.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:25.990 -07 000000512 INF: FPGA: Recv ZSGSRD 29919
17-03-18 02:01:26.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:26.000 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:01:26.000 -07 000000424 INF: FPGA: Recv ZPIEZORD 25443
17-03-18 02:01:26.010 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:26.010 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.416 V. Piezo Error = -9.8 V.
17-03-18 02:01:26.010 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29914 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29914 (-131.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29909 (-131.7 uncal um), Max = 29919 (-131.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:01:26.010 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29914, posNoise = 5, negNoise = 5
17-03-18 02:01:26.010 -07 000000610 INF: Z Motor: After move to -0.132493, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:01:26.010 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:01:26.010 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:01:26.010 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:01:26.010 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:01:26.010 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:01:26.010 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:01:26.010 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:01:26.010 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:01:26.010 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:01:26.010 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:01:26.010 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:01:26.010 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:01:26.010 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:01:26.020 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:01:26.020 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:01:26.020 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:01:26.020 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:01:26.030 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:01:26.030 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 02:01:26.030 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:01:26.030 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:01:26.040 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 29119 150\n [Camera]
17-03-18 02:01:26.240 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:01:26.510 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:01:26.520 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:01:26.630 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:01:26.630 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:01:26.630 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:01:26.630 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:01:26.630 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:01:26.630 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:01:26.640 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:01:26.640 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 02:01:26.640 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:01:26.640 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 02:01:26.820 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29119 777
17-03-18 02:01:26.970 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:01:27.020 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 02:01:27.020 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:01:27.020 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:27.020 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 02:01:27.020 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 02:01:27.020 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:27.030 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:01:27.030 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:01:27.030 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:01:27.160 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 525 ms.
17-03-18 02:01:27.160 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:01:27.160 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:01:27.160 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:01:27.160 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:01:27.160 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:01:27.160 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:01:27.170 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:01:27.170 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:01:27.170 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:01:27.170 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:01:27.350 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 02:01:27.350 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:01:27.350 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 29119 150' command took 2 ms to send, 1305 ms to get response, and 1314 ms overall
17-03-18 02:01:27.350 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:01:27.350 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.132497234019772. ------
17-03-18 02:01:27.360 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:01:27.550 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 02:01:27.550 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 02:01:27.550 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:27.550 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 02:01:27.550 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:01:27.550 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:27.550 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:01:27.550 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:01:27.550 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:01:27.560 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:01:27.560 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13915 mm
17-03-18 02:01:27.560 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:01:27.570 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:01:27.570 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 203 ms to get response, and 211 ms overall
17-03-18 02:01:27.570 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:01:27.570 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 02:01:27.570 -07 000000512 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-18 02:01:27.580 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:28.130 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 30398, sync = True, waitForSettling = False)
17-03-18 02:01:28.130 -07 000000444 INF: Z Motor: Moving to -0.139153 mm, started at -0.132497 mm, distance = -6.66 um
17-03-18 02:01:28.130 -07 000000444 INF: FPGA: Xmit ZDACW 30398\n [Z Motor]
17-03-18 02:01:28.659 -07 000000591 INF: FPGA: Recv YRDPOS 124382
17-03-18 02:01:28.659 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:01:28.659 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:01:28.659 -07 000000444 INF: FPGA: 'ZDACW 30398' command took 0 ms to send, 520 ms to get response, and 529 ms overall
17-03-18 02:01:28.659 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1070 ms to get response, and 1086 ms overall
17-03-18 02:01:28.659 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:01:28.659 -07 000000512 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:28.659 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1080 ms to get response, and 1087 ms overall
17-03-18 02:01:28.659 -07 000000424 INF: FPGA: Recv ZDACR 30398
17-03-18 02:01:28.659 -07 000000512 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:01:28.659 -07 000000512 INF: Y Motor: Moving 1343 steps-20
17-03-18 02:01:28.669 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:01:28.669 -07 000000444 INF: Z Motor: MoveAbsStepped took 538 ms (did NOT wait for settling yet))
17-03-18 02:01:28.669 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:01:29.049 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 02:01:29.049 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 383 ms overall
17-03-18 02:01:29.089 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:29.089 -07 000000585 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:01:29.099 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:01:29.099 -07 000000512 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:29.099 -07 000000512 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 02:01:29.099 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.840 mm, average velocity = 2.192 mm/sec
17-03-18 02:01:29.279 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 4.007176,
17-03-18 02:01:30.049 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:30.049 -07 000000585 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:01:30.059 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:01:30.059 -07 000000512 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:30.079 -07 000000512 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:01:30.079 -07 000000512 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:01:30.079 -07 000000512 INF: Y Motor: Moved to 61.5640 after 2512 ms (table move)
17-03-18 02:01:30.089 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139153 mm (DAC = 30398)
17-03-18 02:01:30.089 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:30.089 -07 000000424 INF: FPGA: Recv ZSGSRD 30949
17-03-18 02:01:30.099 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:01:30.099 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:30.099 -07 000000569 INF: FPGA: Recv ZSGSRD 30955
17-03-18 02:01:30.109 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:30.109 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:30.109 -07 000000512 INF: FPGA: Recv ZSGSRD 30960
17-03-18 02:01:30.119 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:30.119 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:30.119 -07 000000444 INF: FPGA: Recv ZSGSRD 30950
17-03-18 02:01:30.129 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:30.129 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:30.129 -07 000000569 INF: FPGA: Recv ZSGSRD 30947
17-03-18 02:01:30.139 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:30.139 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:30.139 -07 000000585 INF: FPGA: Recv ZSGSRD 30944
17-03-18 02:01:30.149 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:30.149 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:30.149 -07 000000569 INF: FPGA: Recv ZSGSRD 30955
17-03-18 02:01:30.159 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:30.159 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:30.159 -07 000000512 INF: FPGA: Recv ZSGSRD 30949
17-03-18 02:01:30.169 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:30.169 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:30.169 -07 000000569 INF: FPGA: Recv ZSGSRD 30953
17-03-18 02:01:30.179 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:30.179 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:30.179 -07 000000512 INF: FPGA: Recv ZSGSRD 30962
17-03-18 02:01:30.189 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:30.189 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:01:30.189 -07 000000569 INF: FPGA: Recv ZPIEZORD 26801
17-03-18 02:01:30.199 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:30.199 -07 000000447 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.638 V. Piezo Error = -9.1 V.
17-03-18 02:01:30.199 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30952 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30952 (-138.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30944 (-138.3 uncal um), Max = 30962 (-138.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:01:30.199 -07 000000447 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30952, posNoise = 10, negNoise = 8
17-03-18 02:01:30.199 -07 000000447 INF: Z Motor: After move to -0.139153, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:01:30.199 -07 000000447 INF: Z Motor: Settle wait time = 1960 ms, measure time = 109 ms (allowed 150 ms), total time = 2069 ms
17-03-18 02:01:30.199 -07 000000447 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:01:30.249 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2682 ms
17-03-18 02:01:30.249 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:01:30.249 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:01:30.249 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:01:30.249 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:01:30.249 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:01:30.249 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:01:30.249 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:01:30.249 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:01:30.249 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:01:30.259 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:01:30.259 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:01:30.269 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 02:01:30.269 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:01:30.269 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:01:30.309 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:01:30.609 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:01:30.609 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:01:30.619 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:01:30.619 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) start.
17-03-18 02:01:30.649 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:01:30.649 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 02:01:30.649 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 02:01:30.739 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:01:30.739 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:30.749 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:01:30.749 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:01:30.849 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:01:30.849 -07 000000447 INF: Autofocus start
17-03-18 02:01:30.849 -07 000000447 INF: MeasureProfile start
17-03-18 02:01:30.849 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:01:30.859 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:01:30.859 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:01:30.859 -07 000000447 INF: MeasureProfile done
17-03-18 02:01:30.859 -07 000000447 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:01:30.859 -07 000000447 INF: Autofocus finished
17-03-18 02:01:31.059 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:01:31.059 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:01:31.059 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.13916556622292. ----------
17-03-18 02:01:31.059 -07 000000610 INF: Cycle	94	Tile	3	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:01:31.069 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28922, sync = True, waitForSettling = True)
17-03-18 02:01:31.069 -07 000000610 INF: Z Motor: Moving to -0.132396 mm, started at -0.139166 mm, distance = 6.77 um
17-03-18 02:01:31.069 -07 000000610 INF: FPGA: Xmit ZDACW 28922\n [Z Motor]
17-03-18 02:01:31.069 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:01:31.079 -07 000000610 INF: FPGA: 'ZDACW 28922' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:01:31.079 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:01:31.079 -07 000000437 INF: FPGA: Recv ZDACR 28922
17-03-18 02:01:31.089 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:31.089 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:01:31.239 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:31.239 -07 000000424 INF: FPGA: Recv ZSGSRD 29899
17-03-18 02:01:31.249 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:31.249 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:31.249 -07 000000437 INF: FPGA: Recv ZSGSRD 29900
17-03-18 02:01:31.259 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:31.259 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:31.259 -07 000000444 INF: FPGA: Recv ZSGSRD 29907
17-03-18 02:01:31.269 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:31.269 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:31.269 -07 000000447 INF: FPGA: Recv ZSGSRD 29895
17-03-18 02:01:31.279 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:31.279 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:31.279 -07 000000512 INF: FPGA: Recv ZSGSRD 29904
17-03-18 02:01:31.289 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:31.289 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:31.289 -07 000000591 INF: FPGA: Recv ZSGSRD 29902
17-03-18 02:01:31.299 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:31.299 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:31.299 -07 000000437 INF: FPGA: Recv ZSGSRD 29898
17-03-18 02:01:31.309 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:31.309 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:31.309 -07 000000591 INF: FPGA: Recv ZSGSRD 29902
17-03-18 02:01:31.319 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:31.319 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:31.319 -07 000000629 INF: FPGA: Recv ZSGSRD 29897
17-03-18 02:01:31.329 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:31.329 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:31.329 -07 000000585 INF: FPGA: Recv ZSGSRD 29899
17-03-18 02:01:31.339 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:31.339 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:01:31.339 -07 000000629 INF: FPGA: Recv ZPIEZORD 25448
17-03-18 02:01:31.349 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:31.349 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.413 V. Piezo Error = -9.8 V.
17-03-18 02:01:31.349 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29900 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29900 (-131.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29895 (-131.6 uncal um), Max = 29907 (-131.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:01:31.349 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29900, posNoise = 7, negNoise = 5
17-03-18 02:01:31.349 -07 000000610 INF: Z Motor: After move to -0.132396, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:01:31.349 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:01:31.349 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:01:31.349 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:01:31.349 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:01:31.349 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:01:31.349 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:01:31.349 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:01:31.349 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:01:31.349 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:01:31.349 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:01:31.349 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:01:31.349 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:01:31.349 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:01:31.359 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:01:31.359 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:01:31.359 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:01:31.359 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:01:31.369 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 02:01:31.369 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:01:31.369 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 02:01:31.369 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:01:31.369 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 29098 150\n [Camera]
17-03-18 02:01:31.509 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:01:31.519 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:01:31.569 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:01:31.969 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:01:31.969 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:01:31.969 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:01:31.969 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:01:31.969 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 02:01:31.969 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:01:31.969 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:01:31.969 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:01:31.969 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:01:31.969 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:01:32.159 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29098 777
17-03-18 02:01:32.309 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:01:32.358 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 02:01:32.468 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 495 ms.
17-03-18 02:01:32.468 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:32.468 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 498 ms.
17-03-18 02:01:32.468 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 499 ms.
17-03-18 02:01:32.468 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:32.468 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:01:32.468 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:01:32.468 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 504 ms.
17-03-18 02:01:32.478 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 507 ms.
17-03-18 02:01:32.498 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:01:32.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:01:32.498 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:01:32.498 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:01:32.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:01:32.498 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:01:32.508 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:01:32.508 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:01:32.508 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:01:32.508 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:01:32.688 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 02:01:32.688 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:01:32.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 29098 150' command took 2 ms to send, 1304 ms to get response, and 1315 ms overall
17-03-18 02:01:32.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:01:32.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132407295049788. ------
17-03-18 02:01:32.688 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:01:32.688 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13876 mm
17-03-18 02:01:32.688 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:01:32.908 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:01:32.908 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:01:32.908 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:32.908 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:01:32.908 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:01:32.908 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:32.918 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 02:01:32.918 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 417 ms.
17-03-18 02:01:32.918 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 02:01:32.918 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 422 ms.
17-03-18 02:01:32.928 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 02:01:32.928 -07 000000585 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-18 02:01:32.928 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:32.928 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:01:32.928 -07 000000569 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:01:32.928 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 239 ms to get response, and 239 ms overall
17-03-18 02:01:32.938 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:01:32.938 -07 000000585 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:32.938 -07 000000585 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:01:32.938 -07 000000585 INF: Y Motor: Moving 1342 steps-18
17-03-18 02:01:32.938 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:01:32.938 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30313, sync = True, waitForSettling = False)
17-03-18 02:01:32.938 -07 000000569 INF: Z Motor: Moving to -0.138764 mm, started at -0.132407 mm, distance = -6.36 um
17-03-18 02:01:32.948 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:01:32.958 -07 000000569 INF: FPGA: Xmit ZDACW 30313\n [Z Motor]
17-03-18 02:01:33.908 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:01:33.908 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:01:33.908 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 02:01:33.908 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 950 ms to get response, and 970 ms overall
17-03-18 02:01:33.908 -07 000000569 INF: FPGA: 'ZDACW 30313' command took 0 ms to send, 940 ms to get response, and 969 ms overall
17-03-18 02:01:33.908 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:01:33.908 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 960 ms to get response, and 971 ms overall
17-03-18 02:01:33.908 -07 000000579 INF: FPGA: Recv ZDACR 30313
17-03-18 02:01:33.918 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:01:33.918 -07 000000569 INF: Z Motor: MoveAbsStepped took 978 ms (did NOT wait for settling yet))
17-03-18 02:01:33.948 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:33.958 -07 000000579 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:01:33.958 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:01:33.958 -07 000000585 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:33.958 -07 000000585 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 02:01:33.958 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 970 ms, distance = 0.839 mm, average velocity = 0.865 mm/sec
17-03-18 02:01:34.648 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 4.030322,
17-03-18 02:01:34.908 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:34.908 -07 000000592 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:01:34.918 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:01:34.918 -07 000000585 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:34.938 -07 000000585 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:01:34.938 -07 000000585 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:01:34.938 -07 000000585 INF: Y Motor: Moved to 62.3955 after 2011 ms (table move)
17-03-18 02:01:34.938 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138764 mm (DAC = 30313)
17-03-18 02:01:34.948 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:34.948 -07 000000592 INF: FPGA: Recv ZSGSRD 30890
17-03-18 02:01:34.958 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:01:34.958 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:34.958 -07 000000569 INF: FPGA: Recv ZSGSRD 30893
17-03-18 02:01:34.968 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:34.968 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:34.968 -07 000000462 INF: FPGA: Recv ZSGSRD 30886
17-03-18 02:01:34.978 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:34.978 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:34.978 -07 000000579 INF: FPGA: Recv ZSGSRD 30890
17-03-18 02:01:34.988 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:34.988 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:34.988 -07 000000462 INF: FPGA: Recv ZSGSRD 30894
17-03-18 02:01:34.998 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:34.998 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:34.998 -07 000000592 INF: FPGA: Recv ZSGSRD 30892
17-03-18 02:01:35.008 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:35.008 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:35.008 -07 000000461 INF: FPGA: Recv ZSGSRD 30893
17-03-18 02:01:35.018 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:35.018 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:35.018 -07 000000592 INF: FPGA: Recv ZSGSRD 30890
17-03-18 02:01:35.028 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:35.028 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:35.028 -07 000000585 INF: FPGA: Recv ZSGSRD 30888
17-03-18 02:01:35.038 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:35.038 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:35.038 -07 000000592 INF: FPGA: Recv ZSGSRD 30888
17-03-18 02:01:35.048 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:35.048 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:01:35.048 -07 000000585 INF: FPGA: Recv ZPIEZORD 26721
17-03-18 02:01:35.058 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:35.058 -07 000000629 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.625 V. Piezo Error = -9.2 V.
17-03-18 02:01:35.058 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30890 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30890 (-138.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30886 (-137.9 uncal um), Max = 30894 (-138.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:01:35.058 -07 000000629 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30890, posNoise = 4, negNoise = 4
17-03-18 02:01:35.058 -07 000000629 INF: Z Motor: After move to -0.138764, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:01:35.058 -07 000000629 INF: Z Motor: Settle wait time = 2008 ms, measure time = 112 ms (allowed 150 ms), total time = 2120 ms
17-03-18 02:01:35.058 -07 000000629 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-18 02:01:35.098 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2400 ms
17-03-18 02:01:35.098 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:01:35.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:01:35.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:01:35.098 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:01:35.098 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:01:35.098 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:01:35.098 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:01:35.098 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:01:35.098 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:01:35.108 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:01:35.108 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:01:35.118 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:01:35.118 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:01:35.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:01:35.168 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:01:35.468 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 02:01:35.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 02:01:35.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:01:35.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 02:01:35.508 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:01:35.508 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 02:01:35.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 385 ms overall
17-03-18 02:01:35.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:01:35.598 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:35.598 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:01:35.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:01:35.608 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:01:35.608 -07 000000461 INF: Autofocus start
17-03-18 02:01:35.608 -07 000000461 INF: MeasureProfile start
17-03-18 02:01:35.608 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:01:35.618 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:01:35.618 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:01:35.618 -07 000000461 INF: MeasureProfile done
17-03-18 02:01:35.618 -07 000000461 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:01:35.618 -07 000000461 INF: Autofocus finished
17-03-18 02:01:35.818 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:01:35.818 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:01:35.818 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.138767265070131. ----------
17-03-18 02:01:35.818 -07 000000610 INF: Cycle	94	Tile	4	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:01:35.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28820, sync = True, waitForSettling = True)
17-03-18 02:01:35.828 -07 000000610 INF: Z Motor: Moving to -0.131930 mm, started at -0.138767 mm, distance = 6.84 um
17-03-18 02:01:35.828 -07 000000610 INF: FPGA: Xmit ZDACW 28820\n [Z Motor]
17-03-18 02:01:35.828 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:01:35.838 -07 000000610 INF: FPGA: 'ZDACW 28820' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:35.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:01:35.838 -07 000000585 INF: FPGA: Recv ZDACR 28820
17-03-18 02:01:35.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:35.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:01:35.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:35.998 -07 000000629 INF: FPGA: Recv ZSGSRD 29828
17-03-18 02:01:36.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:36.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:36.008 -07 000000444 INF: FPGA: Recv ZSGSRD 29832
17-03-18 02:01:36.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:36.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:36.018 -07 000000461 INF: FPGA: Recv ZSGSRD 29829
17-03-18 02:01:36.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:36.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:36.028 -07 000000592 INF: FPGA: Recv ZSGSRD 29823
17-03-18 02:01:36.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:36.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:36.038 -07 000000462 INF: FPGA: Recv ZSGSRD 29829
17-03-18 02:01:36.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:36.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:36.048 -07 000000444 INF: FPGA: Recv ZSGSRD 29828
17-03-18 02:01:36.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:36.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:36.058 -07 000000462 INF: FPGA: Recv ZSGSRD 29823
17-03-18 02:01:36.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:36.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:36.068 -07 000000592 INF: FPGA: Recv ZSGSRD 29824
17-03-18 02:01:36.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:36.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:36.078 -07 000000462 INF: FPGA: Recv ZSGSRD 29826
17-03-18 02:01:36.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:36.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:36.088 -07 000000585 INF: FPGA: Recv ZSGSRD 29831
17-03-18 02:01:36.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:36.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:01:36.098 -07 000000585 INF: FPGA: Recv ZPIEZORD 25337
17-03-18 02:01:36.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:36.108 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.398 V. Piezo Error = -9.9 V.
17-03-18 02:01:36.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29827 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29828 (-131.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29823 (-131.1 uncal um), Max = 29832 (-131.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:01:36.108 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29827, posNoise = 5, negNoise = 4
17-03-18 02:01:36.108 -07 000000610 INF: Z Motor: After move to -0.131930, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:01:36.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:01:36.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:01:36.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:01:36.108 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:01:36.108 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:01:36.108 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:01:36.108 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:01:36.108 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:01:36.108 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:01:36.108 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 02:01:36.108 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:01:36.108 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:01:36.108 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:01:36.118 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:01:36.118 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:01:36.118 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:01:36.118 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:01:36.128 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:01:36.128 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:01:36.128 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:01:36.128 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:01:36.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28997 150\n [Camera]
17-03-18 02:01:36.328 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:01:36.507 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:01:36.517 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:01:36.727 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:01:36.727 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:01:36.727 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:01:36.727 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:01:36.727 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 02:01:36.727 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:01:36.727 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:01:36.737 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:01:36.737 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:01:36.737 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 02:01:36.917 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28997 777
17-03-18 02:01:37.067 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:01:37.127 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 02:01:37.127 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:01:37.127 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:37.137 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:01:37.137 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:01:37.137 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:37.137 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:01:37.137 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 02:01:37.137 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:01:37.147 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:01:37.257 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:01:37.257 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:01:37.257 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:01:37.257 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:01:37.257 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:01:37.257 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:01:37.257 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:01:37.257 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:01:37.257 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:01:37.257 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:01:37.447 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:01:37.447 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:01:37.447 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28997 150' command took 2 ms to send, 1306 ms to get response, and 1316 ms overall
17-03-18 02:01:37.447 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:01:37.447 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.131938327563439. ------
17-03-18 02:01:37.457 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:01:37.457 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13863 mm
17-03-18 02:01:37.457 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:01:37.657 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 02:01:37.657 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:01:37.657 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:37.667 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 02:01:37.667 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 02:01:37.667 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:37.667 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:01:37.667 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:01:37.667 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 02:01:37.677 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 02:01:37.677 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:01:37.677 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 217 ms to get response, and 226 ms overall
17-03-18 02:01:37.677 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:01:37.687 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 02:01:37.687 -07 000000569 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 02:01:37.687 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 30284, sync = True, waitForSettling = False)
17-03-18 02:01:37.687 -07 000000629 INF: Z Motor: Moving to -0.138631 mm, started at -0.131938 mm, distance = -6.69 um
17-03-18 02:01:37.697 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:37.707 -07 000000629 INF: FPGA: Xmit ZDACW 30284\n [Z Motor]
17-03-18 02:01:38.407 -07 000000502 INF: FPGA: Recv YRDPOS 127787
17-03-18 02:01:38.407 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:01:38.407 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:01:38.407 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 711 ms to get response, and 723 ms overall
17-03-18 02:01:38.407 -07 000000629 INF: FPGA: 'ZDACW 30284' command took 0 ms to send, 691 ms to get response, and 717 ms overall
17-03-18 02:01:38.407 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:01:38.407 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 701 ms to get response, and 719 ms overall
17-03-18 02:01:38.407 -07 000000569 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:38.407 -07 000000502 INF: FPGA: Recv ZDACR 30284
17-03-18 02:01:38.417 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:01:38.417 -07 000000569 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:01:38.417 -07 000000569 INF: Y Motor: Moving 1339 steps-15
17-03-18 02:01:38.417 -07 000000629 INF: Z Motor: MoveAbsStepped took 726 ms (did NOT wait for settling yet))
17-03-18 02:01:38.417 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:01:38.787 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 02:01:38.787 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-18 02:01:38.837 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:38.837 -07 000000629 INF: FPGA: Recv YRDPOS 129483
17-03-18 02:01:38.847 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:01:38.847 -07 000000569 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:38.847 -07 000000569 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 02:01:38.847 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.837 mm, average velocity = 2.215 mm/sec
17-03-18 02:01:39.797 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:39.797 -07 000000611 INF: FPGA: Recv YRDPOS 129483
17-03-18 02:01:39.807 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:39.807 -07 000000569 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:39.837 -07 000000569 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:01:39.837 -07 000000569 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:01:39.837 -07 000000569 INF: Y Motor: Moved to 63.2241 after 2149 ms (table move)
17-03-18 02:01:39.837 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138631 mm (DAC = 30284)
17-03-18 02:01:39.837 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:39.837 -07 000000502 INF: FPGA: Recv ZSGSRD 30872
17-03-18 02:01:39.847 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:01:39.847 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:39.847 -07 000000444 INF: FPGA: Recv ZSGSRD 30860
17-03-18 02:01:39.857 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:39.857 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:39.857 -07 000000629 INF: FPGA: Recv ZSGSRD 30869
17-03-18 02:01:39.867 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:39.867 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:39.867 -07 000000444 INF: FPGA: Recv ZSGSRD 30871
17-03-18 02:01:39.877 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:39.877 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:39.877 -07 000000569 INF: FPGA: Recv ZSGSRD 30875
17-03-18 02:01:39.887 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:39.887 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:39.887 -07 000000561 INF: FPGA: Recv ZSGSRD 30864
17-03-18 02:01:39.897 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:39.897 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:39.897 -07 000000569 INF: FPGA: Recv ZSGSRD 30863
17-03-18 02:01:39.907 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:39.907 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:39.907 -07 000000608 INF: FPGA: Recv ZSGSRD 30870
17-03-18 02:01:39.917 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:39.917 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:39.917 -07 000000569 INF: FPGA: Recv ZSGSRD 30874
17-03-18 02:01:39.927 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:39.927 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:39.927 -07 000000629 INF: FPGA: Recv ZSGSRD 30879
17-03-18 02:01:39.937 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:39.937 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:01:39.937 -07 000000444 INF: FPGA: Recv ZPIEZORD 26748
17-03-18 02:01:39.947 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:39.947 -07 000000585 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.621 V. Piezo Error = -9.1 V.
17-03-18 02:01:39.947 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30870 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30870 (-137.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30860 (-137.8 uncal um), Max = 30879 (-137.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 02:01:39.947 -07 000000585 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30870, posNoise = 9, negNoise = 10
17-03-18 02:01:39.947 -07 000000585 INF: Z Motor: After move to -0.138631, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:01:39.947 -07 000000585 INF: Z Motor: Settle wait time = 2151 ms, measure time = 105 ms (allowed 150 ms), total time = 2256 ms
17-03-18 02:01:39.947 -07 000000585 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 02:01:39.997 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2537 ms
17-03-18 02:01:39.997 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:01:39.997 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:01:39.997 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:01:39.997 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:01:39.997 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:01:39.997 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:01:39.997 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:01:39.997 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:01:39.997 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:01:40.007 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:01:40.007 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:01:40.017 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 3.983999,
17-03-18 02:01:40.017 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 02:01:40.017 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 02:01:40.027 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:01:40.067 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:01:40.367 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:01:40.367 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:01:40.367 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:01:40.367 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) start.
17-03-18 02:01:40.407 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:01:40.407 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 02:01:40.407 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 388 ms overall
17-03-18 02:01:40.497 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 02:01:40.497 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:40.497 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:01:40.497 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 02:01:40.507 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:01:40.507 -07 000000569 INF: Autofocus start
17-03-18 02:01:40.507 -07 000000569 INF: MeasureProfile start
17-03-18 02:01:40.507 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:01:40.517 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:01:40.517 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:01:40.517 -07 000000569 INF: MeasureProfile done
17-03-18 02:01:40.517 -07 000000569 INF: X=32  Z correction [um]=0.1299841
17-03-18 02:01:40.517 -07 000000569 INF: Autofocus finished
17-03-18 02:01:40.716 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:01:40.716 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:01:40.716 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.138638780827296. ----------
17-03-18 02:01:40.716 -07 000000610 INF: Cycle	94	Tile	5	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:01:40.726 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28825, sync = True, waitForSettling = True)
17-03-18 02:01:40.726 -07 000000610 INF: Z Motor: Moving to -0.131952 mm, started at -0.138639 mm, distance = 6.69 um
17-03-18 02:01:40.726 -07 000000610 INF: FPGA: Xmit ZDACW 28825\n [Z Motor]
17-03-18 02:01:40.726 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 02:01:40.736 -07 000000610 INF: FPGA: 'ZDACW 28825' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:40.736 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:01:40.736 -07 000000444 INF: FPGA: Recv ZDACR 28825
17-03-18 02:01:40.746 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:40.746 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:01:40.896 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:40.896 -07 000000502 INF: FPGA: Recv ZSGSRD 29839
17-03-18 02:01:40.906 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:01:40.906 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:40.906 -07 000000629 INF: FPGA: Recv ZSGSRD 29829
17-03-18 02:01:40.916 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:40.916 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:40.916 -07 000000569 INF: FPGA: Recv ZSGSRD 29829
17-03-18 02:01:40.926 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:40.926 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:40.926 -07 000000561 INF: FPGA: Recv ZSGSRD 29828
17-03-18 02:01:40.936 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:40.936 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:40.936 -07 000000585 INF: FPGA: Recv ZSGSRD 29824
17-03-18 02:01:40.946 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:40.946 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:40.946 -07 000000561 INF: FPGA: Recv ZSGSRD 29824
17-03-18 02:01:40.956 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:40.956 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:40.956 -07 000000611 INF: FPGA: Recv ZSGSRD 29823
17-03-18 02:01:40.966 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:40.966 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:40.966 -07 000000585 INF: FPGA: Recv ZSGSRD 29833
17-03-18 02:01:40.976 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:40.976 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:40.976 -07 000000502 INF: FPGA: Recv ZSGSRD 29832
17-03-18 02:01:40.986 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:40.986 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:40.986 -07 000000561 INF: FPGA: Recv ZSGSRD 29829
17-03-18 02:01:40.996 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:40.996 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:01:40.996 -07 000000444 INF: FPGA: Recv ZPIEZORD 25409
17-03-18 02:01:41.006 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:41.006 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.398 V. Piezo Error = -9.7 V.
17-03-18 02:01:41.006 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29829 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29829 (-131.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29823 (-131.1 uncal um), Max = 29839 (-131.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:01:41.006 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29829, posNoise = 10, negNoise = 6
17-03-18 02:01:41.006 -07 000000610 INF: Z Motor: After move to -0.131952, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:01:41.006 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:01:41.006 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:01:41.006 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:01:41.006 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:01:41.006 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:01:41.006 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:01:41.006 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:01:41.006 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:01:41.006 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:01:41.006 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:01:41.006 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:01:41.006 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:01:41.006 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:01:41.006 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:01:41.006 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:01:41.016 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:01:41.016 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:01:41.026 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 02:01:41.026 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:01:41.026 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:01:41.026 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:01:41.026 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 29001 150\n [Camera]
17-03-18 02:01:41.226 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:01:41.506 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:01:41.516 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:01:41.626 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:01:41.626 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:01:41.626 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:01:41.626 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:01:41.626 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:01:41.626 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:01:41.626 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:01:41.626 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:01:41.626 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:01:41.626 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:01:41.816 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29001 777
17-03-18 02:01:41.966 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:01:42.026 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:01:42.026 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:01:42.026 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:42.026 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:01:42.026 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:01:42.026 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:42.026 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:01:42.026 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:01:42.036 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:01:42.036 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:01:42.156 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:01:42.156 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:01:42.156 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:01:42.156 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:01:42.156 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 02:01:42.156 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:01:42.156 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:01:42.156 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:01:42.156 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:01:42.156 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 02:01:42.346 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:01:42.346 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:01:42.346 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 29001 150' command took 2 ms to send, 1307 ms to get response, and 1317 ms overall
17-03-18 02:01:42.356 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:01:42.356 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.131951175987723. ------
17-03-18 02:01:42.356 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13843 mm
17-03-18 02:01:42.356 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:01:42.356 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:01:42.356 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 02:01:42.356 -07 000000444 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 02:01:42.356 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 30240, sync = True, waitForSettling = False)
17-03-18 02:01:42.356 -07 000000611 INF: Z Motor: Moving to -0.138430 mm, started at -0.131951 mm, distance = -6.48 um
17-03-18 02:01:42.366 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:42.376 -07 000000611 INF: FPGA: Xmit ZDACW 30240\n [Z Motor]
17-03-18 02:01:42.556 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:01:42.556 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:01:42.556 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:42.556 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:01:42.556 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:01:42.556 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:42.566 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:01:42.566 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:01:42.566 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 02:01:42.566 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:01:42.576 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:01:42.576 -07 000000502 INF: FPGA: Recv YRDPOS 129484
17-03-18 02:01:42.576 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:01:42.576 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 214 ms to get response, and 219 ms overall
17-03-18 02:01:42.576 -07 000000611 INF: FPGA: 'ZDACW 30240' command took 0 ms to send, 194 ms to get response, and 216 ms overall
17-03-18 02:01:42.576 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 204 ms to get response, and 216 ms overall
17-03-18 02:01:42.576 -07 000000444 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:42.576 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:01:42.586 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:01:42.586 -07 000000561 INF: FPGA: Recv ZDACR 30240
17-03-18 02:01:42.586 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:01:42.586 -07 000000611 INF: Z Motor: MoveAbsStepped took 223 ms (did NOT wait for settling yet))
17-03-18 02:01:42.586 -07 000000444 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:01:42.586 -07 000000444 INF: Y Motor: Moving 1341 steps-17
17-03-18 02:01:42.596 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:01:42.786 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:01:42.786 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 204 ms overall
17-03-18 02:01:42.966 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 02:01:42.966 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 02:01:43.016 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:43.016 -07 000000611 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:01:43.026 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:01:43.026 -07 000000444 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:43.026 -07 000000444 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-18 02:01:43.026 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.167 mm/sec
17-03-18 02:01:43.976 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:43.976 -07 000000611 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:01:43.986 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:01:43.986 -07 000000444 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:44.006 -07 000000444 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:01:44.006 -07 000000444 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:01:44.006 -07 000000444 INF: Y Motor: Moved to 64.0571 after 1647 ms (table move)
17-03-18 02:01:44.006 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138430 mm (DAC = 30240)
17-03-18 02:01:44.006 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:44.016 -07 000000561 INF: FPGA: Recv ZSGSRD 30838
17-03-18 02:01:44.016 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 02:01:44.016 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:44.016 -07 000000444 INF: FPGA: Recv ZSGSRD 30834
17-03-18 02:01:44.026 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:01:44.026 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:44.026 -07 000000444 INF: FPGA: Recv ZSGSRD 30844
17-03-18 02:01:44.036 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:44.036 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:44.036 -07 000000502 INF: FPGA: Recv ZSGSRD 30838
17-03-18 02:01:44.046 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:44.046 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:44.046 -07 000000611 INF: FPGA: Recv ZSGSRD 30837
17-03-18 02:01:44.056 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:44.056 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:44.056 -07 000000561 INF: FPGA: Recv ZSGSRD 30839
17-03-18 02:01:44.066 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:01:44.066 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:44.066 -07 000000611 INF: FPGA: Recv ZSGSRD 30840
17-03-18 02:01:44.076 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:01:44.076 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:44.076 -07 000000561 INF: FPGA: Recv ZSGSRD 30842
17-03-18 02:01:44.086 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:44.086 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:44.086 -07 000000629 INF: FPGA: Recv ZSGSRD 30831
17-03-18 02:01:44.096 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:44.096 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:44.096 -07 000000444 INF: FPGA: Recv ZSGSRD 30839
17-03-18 02:01:44.106 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:44.106 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:01:44.106 -07 000000561 INF: FPGA: Recv ZPIEZORD 26735
17-03-18 02:01:44.116 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:44.116 -07 000000608 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.614 V. Piezo Error = -9.0 V.
17-03-18 02:01:44.116 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30838 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30838 (-137.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30831 (-137.6 uncal um), Max = 30844 (-137.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:01:44.116 -07 000000608 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30838, posNoise = 6, negNoise = 7
17-03-18 02:01:44.116 -07 000000608 INF: Z Motor: After move to -0.138430, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:01:44.116 -07 000000608 INF: Z Motor: Settle wait time = 1650 ms, measure time = 103 ms (allowed 150 ms), total time = 1753 ms
17-03-18 02:01:44.116 -07 000000608 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 02:01:44.166 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1805 ms
17-03-18 02:01:44.166 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:01:44.166 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:01:44.166 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:01:44.166 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:01:44.166 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:01:44.166 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:01:44.166 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:01:44.166 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:01:44.166 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:01:44.176 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:01:44.176 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:01:44.186 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:01:44.186 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:01:44.186 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:01:44.236 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:01:44.526 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:01:44.526 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:01:44.536 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:01:44.536 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 02:01:44.566 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:01:44.576 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 02:01:44.576 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:01:44.656 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:01:44.656 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:44.656 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:01:44.656 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 02:01:44.676 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:01:44.676 -07 000000629 INF: Autofocus start
17-03-18 02:01:44.676 -07 000000629 INF: MeasureProfile start
17-03-18 02:01:44.676 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:01:44.686 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:01:44.686 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:01:44.686 -07 000000629 INF: MeasureProfile done
17-03-18 02:01:44.686 -07 000000629 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:01:44.686 -07 000000629 INF: Autofocus finished
17-03-18 02:01:44.885 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:01:44.885 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:01:44.885 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138433206038759. ----------
17-03-18 02:01:44.885 -07 000000610 INF: Cycle	94	Tile	6	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:01:44.895 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28735, sync = True, waitForSettling = True)
17-03-18 02:01:44.895 -07 000000610 INF: Z Motor: Moving to -0.131540 mm, started at -0.138433 mm, distance = 6.89 um
17-03-18 02:01:44.895 -07 000000610 INF: FPGA: Xmit ZDACW 28735\n [Z Motor]
17-03-18 02:01:44.895 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:01:44.905 -07 000000610 INF: FPGA: 'ZDACW 28735' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:44.905 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:01:44.905 -07 000000561 INF: FPGA: Recv ZDACR 28735
17-03-18 02:01:44.915 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:44.915 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:01:45.065 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:45.065 -07 000000512 INF: FPGA: Recv ZSGSRD 29766
17-03-18 02:01:45.075 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:45.095 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:45.095 -07 000000561 INF: FPGA: Recv ZSGSRD 29765
17-03-18 02:01:45.105 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:01:45.125 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:45.125 -07 000000629 INF: FPGA: Recv ZSGSRD 29761
17-03-18 02:01:45.135 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:01:45.145 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:45.145 -07 000000561 INF: FPGA: Recv ZSGSRD 29762
17-03-18 02:01:45.155 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:01:45.155 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:45.155 -07 000000629 INF: FPGA: Recv ZSGSRD 29765
17-03-18 02:01:45.165 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:45.165 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:45.165 -07 000000444 INF: FPGA: Recv ZSGSRD 29762
17-03-18 02:01:45.175 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:45.175 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:45.175 -07 000000611 INF: FPGA: Recv ZSGSRD 29765
17-03-18 02:01:45.185 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:45.185 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:45.185 -07 000000502 INF: FPGA: Recv ZSGSRD 29770
17-03-18 02:01:45.195 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:45.195 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:45.195 -07 000000512 INF: FPGA: Recv ZSGSRD 29767
17-03-18 02:01:45.205 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:45.205 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:45.205 -07 000000444 INF: FPGA: Recv ZSGSRD 29767
17-03-18 02:01:45.215 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:45.215 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:01:45.215 -07 000000629 INF: FPGA: Recv ZPIEZORD 25335
17-03-18 02:01:45.225 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:45.225 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.385 V. Piezo Error = -9.7 V.
17-03-18 02:01:45.225 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29765 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29765 (-130.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29761 (-130.7 uncal um), Max = 29770 (-130.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:01:45.225 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29765, posNoise = 5, negNoise = 4
17-03-18 02:01:45.225 -07 000000610 INF: Z Motor: After move to -0.131540, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:01:45.225 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms)
17-03-18 02:01:45.225 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:01:45.225 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:01:45.225 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:01:45.225 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:01:45.225 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:01:45.225 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:01:45.225 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:01:45.225 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:01:45.225 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 02:01:45.225 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:01:45.225 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 02:01:45.225 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:01:45.235 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:01:45.235 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:01:45.235 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:01:45.235 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:01:45.245 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 02:01:45.245 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:01:45.245 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:01:45.245 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:01:45.245 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28912 150\n [Camera]
17-03-18 02:01:45.395 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 3.99219,
17-03-18 02:01:45.445 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:01:45.845 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:01:45.845 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:01:45.845 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:01:45.845 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:01:45.845 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 02:01:45.845 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:01:45.845 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:01:45.845 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:01:45.845 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:01:45.845 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 02:01:46.035 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28912 777
17-03-18 02:01:46.185 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:01:46.235 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 02:01:46.235 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:01:46.235 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:46.235 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 02:01:46.235 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:01:46.245 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:46.245 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:01:46.245 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:01:46.245 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:01:46.245 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:01:46.375 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:01:46.375 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:01:46.375 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:01:46.375 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:01:46.375 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 02:01:46.375 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:01:46.375 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:01:46.375 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:01:46.375 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:01:46.375 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 02:01:46.515 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:01:46.515 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:01:46.565 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:01:46.565 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:01:46.565 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28912 150' command took 2 ms to send, 1306 ms to get response, and 1317 ms overall
17-03-18 02:01:46.565 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:01:46.565 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.13154002641065. ------
17-03-18 02:01:46.575 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13804 mm
17-03-18 02:01:46.575 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:01:46.575 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:01:46.575 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 02:01:46.575 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 30155, sync = True, waitForSettling = False)
17-03-18 02:01:46.575 -07 000000512 INF: Z Motor: Moving to -0.138041 mm, started at -0.131540 mm, distance = -6.50 um
17-03-18 02:01:46.575 -07 000000447 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 02:01:46.575 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:01:46.585 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:01:46.585 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:46.595 -07 000000512 INF: FPGA: Xmit ZDACW 30155\n [Z Motor]
17-03-18 02:01:46.605 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:01:46.775 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 02:01:46.775 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:01:46.775 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:46.775 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 02:01:46.775 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:01:46.775 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:46.785 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:01:46.785 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:01:46.785 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 02:01:46.795 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:01:46.795 -07 000000424 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:01:46.795 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:01:46.795 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 207 ms to get response, and 222 ms overall
17-03-18 02:01:46.795 -07 000000512 INF: FPGA: 'ZDACW 30155' command took 0 ms to send, 197 ms to get response, and 222 ms overall
17-03-18 02:01:46.795 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:01:46.795 -07 000000447 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:46.795 -07 000000447 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:01:46.795 -07 000000447 INF: Y Motor: Moving 1337 steps-11
17-03-18 02:01:46.805 -07 000000611 INF: FPGA: Recv ZDACR 30155
17-03-18 02:01:46.805 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:01:46.805 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 02:01:46.805 -07 000000512 INF: Z Motor: MoveAbsStepped took 226 ms (did NOT wait for settling yet))
17-03-18 02:01:46.805 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:01:46.805 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:01:47.175 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:01:47.175 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-18 02:01:47.225 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:47.225 -07 000000629 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:01:47.235 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:01:47.235 -07 000000447 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:47.235 -07 000000447 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:01:47.235 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.835 mm, average velocity = 2.199 mm/sec
17-03-18 02:01:48.185 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:48.185 -07 000000629 INF: FPGA: Recv YRDPOS 132873
17-03-18 02:01:48.195 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:01:48.195 -07 000000447 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:48.215 -07 000000447 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:01:48.215 -07 000000447 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:01:48.215 -07 000000447 INF: Y Motor: Moved to 64.8794 after 1643 ms (table move)
17-03-18 02:01:48.225 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138041 mm (DAC = 30155)
17-03-18 02:01:48.225 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:48.225 -07 000000424 INF: FPGA: Recv ZSGSRD 30773
17-03-18 02:01:48.235 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:01:48.235 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:48.235 -07 000000424 INF: FPGA: Recv ZSGSRD 30781
17-03-18 02:01:48.245 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:48.245 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:48.245 -07 000000611 INF: FPGA: Recv ZSGSRD 30786
17-03-18 02:01:48.255 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:48.255 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:48.255 -07 000000447 INF: FPGA: Recv ZSGSRD 30779
17-03-18 02:01:48.265 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:48.265 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:48.265 -07 000000611 INF: FPGA: Recv ZSGSRD 30782
17-03-18 02:01:48.275 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:48.275 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:48.275 -07 000000629 INF: FPGA: Recv ZSGSRD 30781
17-03-18 02:01:48.285 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:48.285 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:48.285 -07 000000424 INF: FPGA: Recv ZSGSRD 30775
17-03-18 02:01:48.295 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:48.295 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:48.295 -07 000000611 INF: FPGA: Recv ZSGSRD 30771
17-03-18 02:01:48.305 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:48.305 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:48.305 -07 000000611 INF: FPGA: Recv ZSGSRD 30779
17-03-18 02:01:48.315 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:48.315 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:48.315 -07 000000447 INF: FPGA: Recv ZSGSRD 30782
17-03-18 02:01:48.325 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:48.325 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:01:48.325 -07 000000447 INF: FPGA: Recv ZPIEZORD 26693
17-03-18 02:01:48.335 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:48.335 -07 000000561 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.601 V. Piezo Error = -9.0 V.
17-03-18 02:01:48.335 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30779 (-137.3 uncal um), Error = 0.8 uncal um, Median = 30780 (-137.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30771 (-137.2 uncal um), Max = 30786 (-137.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:01:48.335 -07 000000561 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30779, posNoise = 7, negNoise = 8
17-03-18 02:01:48.335 -07 000000561 INF: Z Motor: After move to -0.138041, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:01:48.335 -07 000000561 INF: Z Motor: Settle wait time = 1647 ms, measure time = 108 ms (allowed 150 ms), total time = 1755 ms
17-03-18 02:01:48.335 -07 000000561 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:01:48.385 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1807 ms
17-03-18 02:01:48.385 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:01:48.385 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:01:48.385 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:01:48.395 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:01:48.395 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:01:48.395 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:01:48.395 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:01:48.395 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:01:48.395 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:01:48.395 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:01:48.395 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:01:48.405 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 02:01:48.405 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:01:48.415 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:01:48.455 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:01:48.755 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:01:48.755 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:01:48.755 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:01:48.755 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-18 02:01:48.795 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:01:48.795 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 02:01:48.795 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 02:01:48.875 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:01:48.875 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:48.875 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:01:48.875 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:01:48.895 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:01:48.895 -07 000000424 INF: Autofocus start
17-03-18 02:01:48.895 -07 000000424 INF: MeasureProfile start
17-03-18 02:01:48.895 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:01:48.905 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:01:48.905 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:01:48.905 -07 000000424 INF: MeasureProfile done
17-03-18 02:01:48.905 -07 000000424 INF: X=32  Z correction [um]=0.1299841
17-03-18 02:01:48.905 -07 000000424 INF: Autofocus finished
17-03-18 02:01:49.104 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:01:49.104 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:01:49.114 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.138054177522395. ----------
17-03-18 02:01:49.114 -07 000000610 INF: Cycle	94	Tile	7	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:01:49.114 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28696, sync = True, waitForSettling = True)
17-03-18 02:01:49.114 -07 000000610 INF: Z Motor: Moving to -0.131362 mm, started at -0.138054 mm, distance = 6.69 um
17-03-18 02:01:49.114 -07 000000610 INF: FPGA: Xmit ZDACW 28696\n [Z Motor]
17-03-18 02:01:49.114 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:01:49.124 -07 000000610 INF: FPGA: 'ZDACW 28696' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:01:49.124 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:01:49.124 -07 000000447 INF: FPGA: Recv ZDACR 28696
17-03-18 02:01:49.134 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:49.134 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:01:49.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:49.284 -07 000000424 INF: FPGA: Recv ZSGSRD 29741
17-03-18 02:01:49.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:01:49.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:49.294 -07 000000461 INF: FPGA: Recv ZSGSRD 29742
17-03-18 02:01:49.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:49.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:49.304 -07 000000561 INF: FPGA: Recv ZSGSRD 29738
17-03-18 02:01:49.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:49.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:49.314 -07 000000461 INF: FPGA: Recv ZSGSRD 29732
17-03-18 02:01:49.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:49.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:49.324 -07 000000561 INF: FPGA: Recv ZSGSRD 29739
17-03-18 02:01:49.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:49.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:49.334 -07 000000629 INF: FPGA: Recv ZSGSRD 29739
17-03-18 02:01:49.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:49.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:49.344 -07 000000447 INF: FPGA: Recv ZSGSRD 29743
17-03-18 02:01:49.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:49.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:49.354 -07 000000611 INF: FPGA: Recv ZSGSRD 29739
17-03-18 02:01:49.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:49.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:49.364 -07 000000461 INF: FPGA: Recv ZSGSRD 29738
17-03-18 02:01:49.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:49.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:49.374 -07 000000611 INF: FPGA: Recv ZSGSRD 29736
17-03-18 02:01:49.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:49.384 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:01:49.384 -07 000000447 INF: FPGA: Recv ZPIEZORD 25320
17-03-18 02:01:49.394 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:49.394 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.379 V. Piezo Error = -9.7 V.
17-03-18 02:01:49.394 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29739 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29739 (-130.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29732 (-130.5 uncal um), Max = 29743 (-130.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:01:49.394 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29739, posNoise = 4, negNoise = 7
17-03-18 02:01:49.394 -07 000000610 INF: Z Motor: After move to -0.131362, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:01:49.394 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 02:01:49.394 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:01:49.394 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:01:49.394 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:01:49.394 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:01:49.394 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:01:49.394 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:01:49.394 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:01:49.394 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:01:49.394 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:01:49.394 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:01:49.394 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:01:49.394 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:01:49.404 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:01:49.404 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:01:49.404 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:01:49.404 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:01:49.414 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 02:01:49.414 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:01:49.414 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 02:01:49.414 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:01:49.414 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28873 150\n [Camera]
17-03-18 02:01:49.614 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:01:50.014 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:01:50.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:01:50.014 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:01:50.014 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:01:50.014 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 02:01:50.014 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:01:50.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:01:50.014 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:01:50.014 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:01:50.014 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 02:01:50.204 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28873 777
17-03-18 02:01:50.354 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:01:50.414 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 02:01:50.414 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:01:50.414 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:50.414 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 02:01:50.414 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:01:50.414 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:50.414 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:01:50.414 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:01:50.414 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:01:50.424 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 02:01:50.544 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:01:50.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:01:50.544 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:01:50.544 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:01:50.544 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 02:01:50.544 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:01:50.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:01:50.544 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:01:50.684 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:01:50.684 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 02:01:50.734 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 02:01:50.734 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:01:50.734 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28873 150' command took 2 ms to send, 1304 ms to get response, and 1314 ms overall
17-03-18 02:01:50.734 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:01:50.734 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.131372996894964. ------
17-03-18 02:01:50.744 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:01:50.744 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13802 mm
17-03-18 02:01:50.744 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:01:50.744 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 02:01:50.744 -07 000000579 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-18 02:01:50.744 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:01:50.744 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 30150, sync = True, waitForSettling = False)
17-03-18 02:01:50.744 -07 000000447 INF: Z Motor: Moving to -0.138018 mm, started at -0.131373 mm, distance = -6.64 um
17-03-18 02:01:50.754 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:50.754 -07 000000447 INF: FPGA: Xmit ZDACW 30150\n [Z Motor]
17-03-18 02:01:50.754 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:01:50.764 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:50.764 -07 000000447 INF: FPGA: 'ZDACW 30150' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:01:50.764 -07 000000569 INF: FPGA: Recv YRDPOS 132873
17-03-18 02:01:50.774 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:01:50.774 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:01:50.774 -07 000000579 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:50.774 -07 000000579 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:01:50.774 -07 000000579 INF: Y Motor: Moving 1349 steps-28
17-03-18 02:01:50.794 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:01:50.794 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 3.958108,
17-03-18 02:01:50.794 -07 000000461 INF: FPGA: Recv ZDACR 30150
17-03-18 02:01:50.804 -07 000000447 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 02:01:50.804 -07 000000447 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 02:01:50.804 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:01:50.954 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 408 ms.
17-03-18 02:01:50.954 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:01:50.954 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:50.954 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:01:50.954 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 02:01:50.974 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:01:50.974 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:01:51.074 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 02:01:51.074 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:01:51.074 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:51.084 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:01:51.084 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 540 ms.
17-03-18 02:01:51.174 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 02:01:51.174 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-18 02:01:51.224 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:51.224 -07 000000611 INF: FPGA: Recv YRDPOS 134583
17-03-18 02:01:51.234 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:01:51.234 -07 000000579 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:51.234 -07 000000579 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 02:01:51.234 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.843 mm, average velocity = 2.072 mm/sec
17-03-18 02:01:51.514 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:01:51.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:01:52.184 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:52.184 -07 000000444 INF: FPGA: Recv YRDPOS 134583
17-03-18 02:01:52.194 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:01:52.194 -07 000000579 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:52.224 -07 000000579 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:01:52.224 -07 000000579 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:01:52.224 -07 000000579 INF: Y Motor: Moved to 65.7144 after 1476 ms (table move)
17-03-18 02:01:52.224 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138018 mm (DAC = 30150)
17-03-18 02:01:52.224 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:52.224 -07 000000444 INF: FPGA: Recv ZSGSRD 30779
17-03-18 02:01:52.234 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:01:52.234 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:52.234 -07 000000569 INF: FPGA: Recv ZSGSRD 30775
17-03-18 02:01:52.244 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:52.244 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:52.244 -07 000000512 INF: FPGA: Recv ZSGSRD 30778
17-03-18 02:01:52.254 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:52.254 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:52.254 -07 000000611 INF: FPGA: Recv ZSGSRD 30776
17-03-18 02:01:52.264 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:52.264 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:52.264 -07 000000462 INF: FPGA: Recv ZSGSRD 30773
17-03-18 02:01:52.274 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:52.274 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:52.274 -07 000000611 INF: FPGA: Recv ZSGSRD 30773
17-03-18 02:01:52.284 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:52.284 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:52.284 -07 000000579 INF: FPGA: Recv ZSGSRD 30768
17-03-18 02:01:52.294 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:52.294 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:52.294 -07 000000611 INF: FPGA: Recv ZSGSRD 30773
17-03-18 02:01:52.304 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:52.304 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:52.304 -07 000000579 INF: FPGA: Recv ZSGSRD 30777
17-03-18 02:01:52.314 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:52.314 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:52.314 -07 000000608 INF: FPGA: Recv ZSGSRD 30777
17-03-18 02:01:52.324 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:52.324 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:01:52.324 -07 000000585 INF: FPGA: Recv ZPIEZORD 26713
17-03-18 02:01:52.334 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:52.334 -07 000000629 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.601 V. Piezo Error = -8.9 V.
17-03-18 02:01:52.334 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30775 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30776 (-137.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30768 (-137.2 uncal um), Max = 30779 (-137.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:01:52.334 -07 000000629 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30775, posNoise = 4, negNoise = 7
17-03-18 02:01:52.334 -07 000000629 INF: Z Motor: After move to -0.138018, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:01:52.334 -07 000000629 INF: Z Motor: Settle wait time = 1479 ms, measure time = 106 ms (allowed 150 ms), total time = 1585 ms
17-03-18 02:01:52.334 -07 000000629 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:01:52.384 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1639 ms
17-03-18 02:01:52.384 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:01:52.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:01:52.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:01:52.384 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:01:52.384 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:01:52.384 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:01:52.384 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:01:52.384 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:01:52.384 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:01:52.394 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:01:52.394 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:01:52.394 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:01:52.394 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:01:52.404 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:01:52.444 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:01:52.744 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:01:52.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:01:52.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:01:52.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 02:01:52.784 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:01:52.784 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 02:01:52.784 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:01:52.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:01:52.864 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:52.864 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:01:52.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:01:52.884 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:01:52.884 -07 000000512 INF: Autofocus start
17-03-18 02:01:52.884 -07 000000512 INF: MeasureProfile start
17-03-18 02:01:52.884 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:01:52.894 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:01:52.894 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:01:52.894 -07 000000512 INF: MeasureProfile done
17-03-18 02:01:52.894 -07 000000512 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:01:52.894 -07 000000512 INF: Autofocus finished
17-03-18 02:01:53.094 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:01:53.094 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 02:01:53.094 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.138028480673828. ----------
17-03-18 02:01:53.094 -07 000000610 INF: Cycle	94	Tile	8	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:01:53.104 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28644, sync = True, waitForSettling = True)
17-03-18 02:01:53.104 -07 000000610 INF: Z Motor: Moving to -0.131124 mm, started at -0.138028 mm, distance = 6.90 um
17-03-18 02:01:53.104 -07 000000610 INF: FPGA: Xmit ZDACW 28644\n [Z Motor]
17-03-18 02:01:53.104 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:01:53.114 -07 000000610 INF: FPGA: 'ZDACW 28644' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:53.114 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:01:53.114 -07 000000608 INF: FPGA: Recv ZDACR 28644
17-03-18 02:01:53.124 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:53.124 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:01:53.273 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:53.273 -07 000000608 INF: FPGA: Recv ZSGSRD 29704
17-03-18 02:01:53.283 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:01:53.283 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:53.283 -07 000000608 INF: FPGA: Recv ZSGSRD 29708
17-03-18 02:01:53.293 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:53.293 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:53.293 -07 000000608 INF: FPGA: Recv ZSGSRD 29701
17-03-18 02:01:53.303 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:53.303 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:53.303 -07 000000608 INF: FPGA: Recv ZSGSRD 29693
17-03-18 02:01:53.313 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:53.313 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:53.313 -07 000000629 INF: FPGA: Recv ZSGSRD 29694
17-03-18 02:01:53.323 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:53.323 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:53.323 -07 000000608 INF: FPGA: Recv ZSGSRD 29701
17-03-18 02:01:53.333 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:53.333 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:53.333 -07 000000462 INF: FPGA: Recv ZSGSRD 29700
17-03-18 02:01:53.343 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:53.343 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:53.343 -07 000000444 INF: FPGA: Recv ZSGSRD 29698
17-03-18 02:01:53.353 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:01:53.353 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:53.353 -07 000000444 INF: FPGA: Recv ZSGSRD 29698
17-03-18 02:01:53.363 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:53.363 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:53.363 -07 000000444 INF: FPGA: Recv ZSGSRD 29696
17-03-18 02:01:53.373 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:53.373 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:01:53.373 -07 000000561 INF: FPGA: Recv ZPIEZORD 25263
17-03-18 02:01:53.383 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:53.383 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.371 V. Piezo Error = -9.7 V.
17-03-18 02:01:53.383 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29699 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29699 (-130.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29693 (-130.3 uncal um), Max = 29708 (-130.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:01:53.383 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29699, posNoise = 9, negNoise = 6
17-03-18 02:01:53.383 -07 000000610 INF: Z Motor: After move to -0.131124, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:01:53.383 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:01:53.383 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:01:53.383 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:01:53.383 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:01:53.383 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:01:53.383 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:01:53.383 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:01:53.383 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:01:53.383 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:01:53.383 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:01:53.383 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:01:53.383 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:01:53.383 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:01:53.393 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:01:53.393 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:01:53.393 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:01:53.393 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:01:53.403 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:01:53.403 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:01:53.403 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 02:01:53.403 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:01:53.413 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28821 150\n [Camera]
17-03-18 02:01:53.613 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:01:54.003 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:01:54.003 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:01:54.003 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:01:54.003 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:01:54.003 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:01:54.003 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:01:54.003 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:01:54.003 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:01:54.013 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:01:54.013 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 02:01:54.193 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28821 777
17-03-18 02:01:54.343 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:01:54.403 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 02:01:54.403 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:01:54.403 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:54.403 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 02:01:54.403 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:01:54.403 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:54.403 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:01:54.403 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:01:54.413 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:01:54.413 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:01:54.533 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:01:54.533 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:01:54.533 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:01:54.533 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:01:54.533 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:01:54.533 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:01:54.653 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:01:54.653 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 02:01:54.653 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:01:54.653 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 02:01:54.723 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 02:01:54.723 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:01:54.723 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28821 150' command took 2 ms to send, 1305 ms to get response, and 1314 ms overall
17-03-18 02:01:54.723 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:01:54.723 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.131116028409294. ------
17-03-18 02:01:54.733 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:01:54.733 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13751 mm
17-03-18 02:01:54.733 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:01:54.733 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:01:54.733 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 02:01:54.733 -07 000000569 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-18 02:01:54.733 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30039, sync = True, waitForSettling = False)
17-03-18 02:01:54.733 -07 000000462 INF: Z Motor: Moving to -0.137510 mm, started at -0.131116 mm, distance = -6.39 um
17-03-18 02:01:54.743 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:54.743 -07 000000462 INF: FPGA: Xmit ZDACW 30039\n [Z Motor]
17-03-18 02:01:54.743 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:01:54.753 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:54.753 -07 000000462 INF: FPGA: 'ZDACW 30039' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:01:54.753 -07 000000561 INF: FPGA: Recv YRDPOS 134583
17-03-18 02:01:54.763 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:01:54.763 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:01:54.763 -07 000000569 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:54.763 -07 000000569 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:01:54.763 -07 000000569 INF: Y Motor: Moving 1341 steps-17
17-03-18 02:01:54.773 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:01:54.773 -07 000000512 INF: FPGA: Recv ZDACR 30039
17-03-18 02:01:54.783 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:01:54.783 -07 000000462 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 02:01:54.783 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:01:54.963 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:01:54.963 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 225 ms overall
17-03-18 02:01:55.033 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 02:01:55.033 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:01:55.033 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:55.043 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 02:01:55.043 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:01:55.043 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:55.043 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:01:55.043 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:01:55.043 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-18 02:01:55.043 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-18 02:01:55.153 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 02:01:55.153 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:01:55.203 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:55.203 -07 000000561 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:01:55.213 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:01:55.213 -07 000000569 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:55.213 -07 000000569 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:01:55.213 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.106 mm/sec
17-03-18 02:01:56.163 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:56.163 -07 000000585 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:01:56.173 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:01:56.173 -07 000000569 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:56.183 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 3.997626,
17-03-18 02:01:56.203 -07 000000569 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:01:56.203 -07 000000569 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:01:56.203 -07 000000569 INF: Y Motor: Moved to 66.5391 after 1467 ms (table move)
17-03-18 02:01:56.203 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137510 mm (DAC = 30039)
17-03-18 02:01:56.223 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:56.223 -07 000000579 INF: FPGA: Recv ZSGSRD 30701
17-03-18 02:01:56.233 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:01:56.233 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:56.233 -07 000000569 INF: FPGA: Recv ZSGSRD 30706
17-03-18 02:01:56.243 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:56.243 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:56.243 -07 000000561 INF: FPGA: Recv ZSGSRD 30696
17-03-18 02:01:56.253 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:56.253 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:56.253 -07 000000579 INF: FPGA: Recv ZSGSRD 30690
17-03-18 02:01:56.263 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:56.263 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:56.263 -07 000000512 INF: FPGA: Recv ZSGSRD 30699
17-03-18 02:01:56.273 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:56.273 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:56.273 -07 000000569 INF: FPGA: Recv ZSGSRD 30693
17-03-18 02:01:56.283 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:56.283 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:56.283 -07 000000579 INF: FPGA: Recv ZSGSRD 30697
17-03-18 02:01:56.293 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:56.293 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:56.293 -07 000000608 INF: FPGA: Recv ZSGSRD 30696
17-03-18 02:01:56.303 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:56.303 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:56.303 -07 000000462 INF: FPGA: Recv ZSGSRD 30694
17-03-18 02:01:56.313 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:56.313 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:56.313 -07 000000585 INF: FPGA: Recv ZSGSRD 30696
17-03-18 02:01:56.323 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:56.323 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:01:56.323 -07 000000585 INF: FPGA: Recv ZPIEZORD 26585
17-03-18 02:01:56.333 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:56.333 -07 000000629 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.584 V. Piezo Error = -9.0 V.
17-03-18 02:01:56.333 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30697 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30696 (-136.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30690 (-136.7 uncal um), Max = 30706 (-136.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:01:56.333 -07 000000629 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30697, posNoise = 9, negNoise = 7
17-03-18 02:01:56.333 -07 000000629 INF: Z Motor: After move to -0.137510, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:01:56.333 -07 000000629 INF: Z Motor: Settle wait time = 1470 ms, measure time = 125 ms (allowed 150 ms), total time = 1595 ms
17-03-18 02:01:56.333 -07 000000629 INF: Z Motor: Waiting extra 25 ms after reading position to reach expected total of 150 ms
17-03-18 02:01:56.363 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 02:01:56.363 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:01:56.363 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:01:56.363 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:01:56.363 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:01:56.363 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:01:56.363 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:01:56.363 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:01:56.363 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:01:56.363 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:01:56.373 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:01:56.373 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:01:56.373 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:01:56.373 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:01:56.383 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:01:56.423 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:01:56.513 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:01:56.513 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:01:56.723 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:01:56.723 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:01:56.723 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:01:56.723 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 02:01:56.763 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:01:56.763 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 02:01:56.763 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall
17-03-18 02:01:56.843 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:01:56.843 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:56.843 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:01:56.843 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:01:56.863 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:01:56.863 -07 000000437 INF: Autofocus start
17-03-18 02:01:56.863 -07 000000437 INF: MeasureProfile start
17-03-18 02:01:56.863 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:01:56.873 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:01:56.873 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:01:56.873 -07 000000437 INF: MeasureProfile done
17-03-18 02:01:56.873 -07 000000437 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:01:56.873 -07 000000437 INF: Autofocus finished
17-03-18 02:01:57.073 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:01:57.073 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:01:57.073 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.137527392126771. ----------
17-03-18 02:01:57.073 -07 000000610 INF: Cycle	94	Tile	9	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:01:57.083 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28563, sync = True, waitForSettling = True)
17-03-18 02:01:57.083 -07 000000610 INF: Z Motor: Moving to -0.130753 mm, started at -0.137527 mm, distance = 6.77 um
17-03-18 02:01:57.083 -07 000000610 INF: FPGA: Xmit ZDACW 28563\n [Z Motor]
17-03-18 02:01:57.083 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:01:57.093 -07 000000610 INF: FPGA: 'ZDACW 28563' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:57.093 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:01:57.093 -07 000000579 INF: FPGA: Recv ZDACR 28563
17-03-18 02:01:57.103 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:57.103 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:01:57.253 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:57.253 -07 000000561 INF: FPGA: Recv ZSGSRD 29650
17-03-18 02:01:57.263 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:57.263 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:57.263 -07 000000585 INF: FPGA: Recv ZSGSRD 29645
17-03-18 02:01:57.273 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:57.273 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:57.273 -07 000000608 INF: FPGA: Recv ZSGSRD 29643
17-03-18 02:01:57.283 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:57.283 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:57.283 -07 000000502 INF: FPGA: Recv ZSGSRD 29645
17-03-18 02:01:57.293 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:57.293 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:57.293 -07 000000585 INF: FPGA: Recv ZSGSRD 29644
17-03-18 02:01:57.303 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:57.303 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:57.303 -07 000000502 INF: FPGA: Recv ZSGSRD 29642
17-03-18 02:01:57.313 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:57.313 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:57.313 -07 000000585 INF: FPGA: Recv ZSGSRD 29641
17-03-18 02:01:57.322 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:57.322 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:57.322 -07 000000444 INF: FPGA: Recv ZSGSRD 29647
17-03-18 02:01:57.332 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:57.332 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:57.332 -07 000000512 INF: FPGA: Recv ZSGSRD 29640
17-03-18 02:01:57.342 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:57.342 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:01:57.342 -07 000000444 INF: FPGA: Recv ZSGSRD 29639
17-03-18 02:01:57.352 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:57.352 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:01:57.352 -07 000000444 INF: FPGA: Recv ZPIEZORD 25188
17-03-18 02:01:57.362 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:57.362 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.358 V. Piezo Error = -9.8 V.
17-03-18 02:01:57.362 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29644 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29644 (-130.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29639 (-130.0 uncal um), Max = 29650 (-130.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:01:57.362 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29644, posNoise = 6, negNoise = 5
17-03-18 02:01:57.362 -07 000000610 INF: Z Motor: After move to -0.130753, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:01:57.362 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:01:57.362 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:01:57.362 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:01:57.362 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:01:57.362 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:01:57.362 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:01:57.362 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:01:57.362 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:01:57.362 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:01:57.362 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:01:57.362 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:01:57.362 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:01:57.362 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:01:57.362 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:01:57.372 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:01:57.372 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:01:57.372 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:01:57.382 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 02:01:57.382 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:01:57.382 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:01:57.382 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:01:57.392 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28739 150\n [Camera]
17-03-18 02:01:57.582 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:01:57.982 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:01:57.982 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:01:57.982 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:01:57.982 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:01:57.982 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:01:57.982 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:01:57.982 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:01:57.982 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1086685344, 0x0, 391868352) start.
17-03-18 02:01:57.992 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:01:57.992 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 02:01:58.172 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28739 777
17-03-18 02:01:58.322 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:01:58.382 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1086685344, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:01:58.382 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:01:58.382 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:58.382 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 02:01:58.382 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:01:58.382 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:58.382 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:01:58.382 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:01:58.382 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:01:58.392 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 02:01:58.512 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:01:58.512 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:01:58.512 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:01:58.512 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:01:58.512 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 02:01:58.512 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:01:58.512 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:01:58.512 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:01:58.512 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:01:58.512 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 02:01:58.702 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 02:01:58.702 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:01:58.702 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28739 150' command took 2 ms to send, 1304 ms to get response, and 1314 ms overall
17-03-18 02:01:58.702 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:01:58.702 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.130762696741497. ------
17-03-18 02:01:58.712 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:01:58.712 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13762 mm
17-03-18 02:01:58.712 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:01:58.712 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:01:58.712 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 02:01:58.712 -07 000000437 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 02:01:58.712 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30062, sync = True, waitForSettling = False)
17-03-18 02:01:58.712 -07 000000569 INF: Z Motor: Moving to -0.137615 mm, started at -0.130763 mm, distance = -6.85 um
17-03-18 02:01:58.722 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:01:58.722 -07 000000569 INF: FPGA: Xmit ZDACW 30062\n [Z Motor]
17-03-18 02:01:58.722 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:01:58.732 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:58.732 -07 000000569 INF: FPGA: 'ZDACW 30062' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:01:58.732 -07 000000512 INF: FPGA: Recv YRDPOS 136273
17-03-18 02:01:58.742 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:01:58.742 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:01:58.742 -07 000000437 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:58.742 -07 000000437 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:01:58.742 -07 000000437 INF: Y Motor: Moving 1349 steps-28
17-03-18 02:01:58.752 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:01:58.752 -07 000000629 INF: FPGA: Recv ZDACR 30062
17-03-18 02:01:58.762 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:01:58.762 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:01:58.762 -07 000000569 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 02:01:58.912 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:01:58.912 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:01:58.912 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:58.912 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:01:58.912 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:01:58.912 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:01:58.922 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:01:58.922 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:01:58.922 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 02:01:58.922 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:01:58.942 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:01:58.942 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:01:59.132 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:01:59.132 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 02:01:59.182 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:01:59.182 -07 000000608 INF: FPGA: Recv YRDPOS 137977
17-03-18 02:01:59.192 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:01:59.192 -07 000000437 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:01:59.192 -07 000000437 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 02:01:59.192 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.141 mm/sec
17-03-18 02:02:00.142 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:02:00.142 -07 000000591 INF: FPGA: Recv YRDPOS 137978
17-03-18 02:02:00.152 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:02:00.152 -07 000000437 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:02:00.172 -07 000000437 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:02:00.172 -07 000000437 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:02:00.172 -07 000000437 INF: Y Motor: Moved to 67.3721 after 1463 ms (table move)
17-03-18 02:02:00.182 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137615 mm (DAC = 30062)
17-03-18 02:02:00.182 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:00.182 -07 000000502 INF: FPGA: Recv ZSGSRD 30711
17-03-18 02:02:00.192 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:02:00.192 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:00.192 -07 000000502 INF: FPGA: Recv ZSGSRD 30715
17-03-18 02:02:00.202 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:00.202 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:00.202 -07 000000502 INF: FPGA: Recv ZSGSRD 30717
17-03-18 02:02:00.212 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:00.212 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:00.212 -07 000000569 INF: FPGA: Recv ZSGSRD 30706
17-03-18 02:02:00.222 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:00.222 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:00.222 -07 000000512 INF: FPGA: Recv ZSGSRD 30716
17-03-18 02:02:00.232 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:00.232 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:00.232 -07 000000512 INF: FPGA: Recv ZSGSRD 30713
17-03-18 02:02:00.242 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:00.242 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:00.242 -07 000000585 INF: FPGA: Recv ZSGSRD 30710
17-03-18 02:02:00.252 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:00.252 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:00.252 -07 000000585 INF: FPGA: Recv ZSGSRD 30705
17-03-18 02:02:00.262 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:00.262 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:00.262 -07 000000585 INF: FPGA: Recv ZSGSRD 30710
17-03-18 02:02:00.272 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:00.272 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:00.272 -07 000000585 INF: FPGA: Recv ZSGSRD 30718
17-03-18 02:02:00.282 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:00.282 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:02:00.282 -07 000000569 INF: FPGA: Recv ZPIEZORD 26607
17-03-18 02:02:00.292 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:00.292 -07 000000462 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.587 V. Piezo Error = -9.0 V.
17-03-18 02:02:00.292 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30712 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30712 (-136.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30705 (-136.8 uncal um), Max = 30718 (-136.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:02:00.292 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30712, posNoise = 6, negNoise = 7
17-03-18 02:02:00.292 -07 000000462 INF: Z Motor: After move to -0.137615, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:02:00.292 -07 000000462 INF: Z Motor: Settle wait time = 1467 ms, measure time = 109 ms (allowed 150 ms), total time = 1576 ms
17-03-18 02:02:00.292 -07 000000462 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:02:00.342 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-18 02:02:00.342 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:02:00.342 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:02:00.342 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:02:00.342 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:02:00.342 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:02:00.342 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:02:00.342 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:02:00.342 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:02:00.342 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:02:00.352 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:02:00.352 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:02:00.352 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:02:00.352 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:02:00.362 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:02:00.402 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:02:00.702 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:02:00.702 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:02:00.702 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:02:00.822 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:02:00.822 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 02:02:00.822 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 456 ms to get response, and 465 ms overall
17-03-18 02:02:00.822 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) start.
17-03-18 02:02:00.942 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 02:02:00.942 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:00.942 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:02:00.942 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 235 ms.
17-03-18 02:02:01.022 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:02:01.022 -07 000000444 INF: Autofocus start
17-03-18 02:02:01.022 -07 000000444 INF: MeasureProfile start
17-03-18 02:02:01.022 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:02:01.032 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:02:01.032 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:02:01.042 -07 000000444 INF: MeasureProfile done
17-03-18 02:02:01.042 -07 000000444 INF: X=-93  Z correction [um]=-0.4561102
17-03-18 02:02:01.042 -07 000000444 INF: Autofocus finished
17-03-18 02:02:01.232 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:02:01.232 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 02:02:01.232 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137623755308898. ----------
17-03-18 02:02:01.232 -07 000000610 INF: Cycle	94	Tile	10	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:02:01.242 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28475, sync = True, waitForSettling = True)
17-03-18 02:02:01.242 -07 000000610 INF: Z Motor: Moving to -0.130350 mm, started at -0.137624 mm, distance = 7.27 um
17-03-18 02:02:01.242 -07 000000610 INF: FPGA: Xmit ZDACW 28475\n [Z Motor]
17-03-18 02:02:01.242 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:02:01.252 -07 000000610 INF: FPGA: 'ZDACW 28475' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:02:01.252 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:02:01.252 -07 000000512 INF: FPGA: Recv ZDACR 28475
17-03-18 02:02:01.262 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:01.262 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:02:01.412 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:01.412 -07 000000437 INF: FPGA: Recv ZSGSRD 29583
17-03-18 02:02:01.422 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:01.422 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:01.422 -07 000000444 INF: FPGA: Recv ZSGSRD 29582
17-03-18 02:02:01.432 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:01.432 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:01.432 -07 000000629 INF: FPGA: Recv ZSGSRD 29578
17-03-18 02:02:01.442 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:01.442 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:01.442 -07 000000437 INF: FPGA: Recv ZSGSRD 29579
17-03-18 02:02:01.452 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:01.452 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:01.452 -07 000000444 INF: FPGA: Recv ZSGSRD 29586
17-03-18 02:02:01.462 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:01.462 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:01.462 -07 000000512 INF: FPGA: Recv ZSGSRD 29583
17-03-18 02:02:01.472 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:01.472 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:01.472 -07 000000444 INF: FPGA: Recv ZSGSRD 29576
17-03-18 02:02:01.481 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:01.481 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:01.481 -07 000000437 INF: FPGA: Recv ZSGSRD 29579
17-03-18 02:02:01.491 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:01.491 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:01.491 -07 000000561 INF: FPGA: Recv ZSGSRD 29582
17-03-18 02:02:01.501 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:02:01.501 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:01.501 -07 000000569 INF: FPGA: Recv ZSGSRD 29580
17-03-18 02:02:01.511 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:01.511 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:02:01.511 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:02:01.511 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:02:01.511 -07 000000608 INF: FPGA: Recv ZPIEZORD 25098
17-03-18 02:02:01.521 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:01.521 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.345 V. Piezo Error = -9.8 V.
17-03-18 02:02:01.521 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29581 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29581 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29576 (-129.5 uncal um), Max = 29586 (-129.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:02:01.521 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29581, posNoise = 5, negNoise = 5
17-03-18 02:02:01.521 -07 000000610 INF: Z Motor: After move to -0.130350, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:02:01.521 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:02:01.521 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:02:01.521 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:02:01.521 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:02:01.521 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:02:01.521 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:02:01.521 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:02:01.521 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:02:01.521 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:02:01.521 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:02:01.521 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:02:01.521 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:02:01.521 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:02:01.531 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:02:01.531 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:02:01.531 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:02:01.531 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:02:01.541 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 4.004458,
17-03-18 02:02:01.541 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 02:02:01.541 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:02:01.541 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 02:02:01.541 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:02:01.551 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28652 150\n [Camera]
17-03-18 02:02:01.751 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:02:02.141 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:02:02.141 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:02:02.141 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:02:02.141 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:02:02.141 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:02:02.141 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:02:02.141 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:02:02.141 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:02:02.151 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:02:02.151 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:02:02.331 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28652 777
17-03-18 02:02:02.481 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:02:02.541 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 02:02:02.541 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:02:02.541 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:02.541 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 02:02:02.541 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:02:02.541 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:02.541 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:02:02.541 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:02:02.541 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:02:02.551 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 02:02:02.671 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:02:02.671 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:02:02.671 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:02:02.671 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:02:02.671 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:02:02.671 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:02:02.671 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:02:02.671 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:02:02.791 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:02:02.791 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 02:02:02.861 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 02:02:02.861 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:02:02.861 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28652 150' command took 2 ms to send, 1307 ms to get response, and 1318 ms overall
17-03-18 02:02:02.861 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:02:02.861 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.130357971376566. ------
17-03-18 02:02:02.871 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:02:02.871 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13676 mm
17-03-18 02:02:02.871 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:02:02.871 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 02:02:02.871 -07 000000437 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 02:02:02.871 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 29876, sync = True, waitForSettling = False)
17-03-18 02:02:02.871 -07 000000591 INF: Z Motor: Moving to -0.136764 mm, started at -0.130358 mm, distance = -6.41 um
17-03-18 02:02:02.871 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:02:02.881 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:02:02.881 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:02:02.881 -07 000000444 INF: FPGA: Recv YRDPOS 137978
17-03-18 02:02:02.891 -07 000000591 INF: FPGA: Xmit ZDACW 29876\n [Z Motor]
17-03-18 02:02:02.891 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:02:02.891 -07 000000437 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:02:02.891 -07 000000437 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:02:02.891 -07 000000437 INF: Y Motor: Moving 1345 steps-23
17-03-18 02:02:02.891 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 02:02:02.901 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:02:02.901 -07 000000591 INF: FPGA: 'ZDACW 29876' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:02:02.911 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:02:02.921 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:02:02.921 -07 000000629 INF: FPGA: Recv ZDACR 29876
17-03-18 02:02:02.931 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:02:02.931 -07 000000591 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 02:02:03.071 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 02:02:03.071 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:02:03.071 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:03.071 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:02:03.071 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:02:03.101 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:02:03.101 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:02:03.181 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:02:03.181 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:02:03.181 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:03.191 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:02:03.191 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-18 02:02:03.281 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 02:02:03.281 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:02:03.331 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:02:03.331 -07 000000561 INF: FPGA: Recv YRDPOS 139684
17-03-18 02:02:03.341 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:02:03.341 -07 000000437 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:02:03.341 -07 000000437 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 02:02:03.341 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.117 mm/sec
17-03-18 02:02:04.291 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:02:04.291 -07 000000591 INF: FPGA: Recv YRDPOS 139684
17-03-18 02:02:04.301 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:02:04.301 -07 000000437 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:02:04.321 -07 000000437 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:02:04.321 -07 000000437 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:02:04.321 -07 000000437 INF: Y Motor: Moved to 68.2051 after 1451 ms (table move)
17-03-18 02:02:04.331 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136764 mm (DAC = 29876)
17-03-18 02:02:04.331 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:04.331 -07 000000629 INF: FPGA: Recv ZSGSRD 30568
17-03-18 02:02:04.341 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:02:04.341 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:04.341 -07 000000629 INF: FPGA: Recv ZSGSRD 30578
17-03-18 02:02:04.351 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:04.351 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:04.351 -07 000000629 INF: FPGA: Recv ZSGSRD 30589
17-03-18 02:02:04.361 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:04.361 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:04.361 -07 000000629 INF: FPGA: Recv ZSGSRD 30580
17-03-18 02:02:04.371 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:04.371 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:04.371 -07 000000629 INF: FPGA: Recv ZSGSRD 30574
17-03-18 02:02:04.381 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:04.381 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:04.381 -07 000000629 INF: FPGA: Recv ZSGSRD 30576
17-03-18 02:02:04.391 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:04.391 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:04.391 -07 000000629 INF: FPGA: Recv ZSGSRD 30576
17-03-18 02:02:04.401 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:04.401 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:04.401 -07 000000629 INF: FPGA: Recv ZSGSRD 30582
17-03-18 02:02:04.411 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:04.411 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:04.411 -07 000000579 INF: FPGA: Recv ZSGSRD 30578
17-03-18 02:02:04.421 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:04.421 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:04.421 -07 000000579 INF: FPGA: Recv ZSGSRD 30584
17-03-18 02:02:04.431 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:04.431 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:02:04.431 -07 000000579 INF: FPGA: Recv ZPIEZORD 26489
17-03-18 02:02:04.441 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:04.441 -07 000000512 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.559 V. Piezo Error = -9.0 V.
17-03-18 02:02:04.441 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30578 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30578 (-136.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30568 (-135.9 uncal um), Max = 30589 (-136.0 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 02:02:04.441 -07 000000512 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30578, posNoise = 11, negNoise = 10
17-03-18 02:02:04.441 -07 000000512 INF: Z Motor: After move to -0.136764, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:02:04.441 -07 000000512 INF: Z Motor: Settle wait time = 1455 ms, measure time = 109 ms (allowed 150 ms), total time = 1564 ms
17-03-18 02:02:04.441 -07 000000512 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:02:04.491 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 02:02:04.491 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:02:04.491 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:02:04.491 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:02:04.491 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:02:04.491 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:02:04.491 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:02:04.491 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:02:04.491 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:02:04.491 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:02:04.501 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:02:04.501 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:02:04.501 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:02:04.501 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:02:04.511 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:02:04.551 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:02:04.851 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:02:04.851 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:02:04.851 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:02:04.861 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 613074248, 0x0, 559484976) start.
17-03-18 02:02:04.891 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:02:04.891 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 02:02:04.891 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:02:04.971 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 613074248, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:02:04.971 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:04.971 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:02:04.971 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:02:04.991 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:02:04.991 -07 000000569 INF: Autofocus start
17-03-18 02:02:04.991 -07 000000569 INF: MeasureProfile start
17-03-18 02:02:04.991 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:02:05.001 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:02:05.001 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:02:05.001 -07 000000569 INF: MeasureProfile done
17-03-18 02:02:05.001 -07 000000569 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 02:02:05.001 -07 000000569 INF: Autofocus finished
17-03-18 02:02:05.201 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:02:05.201 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:02:05.201 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.136762910881902. ----------
17-03-18 02:02:05.201 -07 000000610 INF: Cycle	94	Tile	11	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:02:05.211 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28354, sync = True, waitForSettling = True)
17-03-18 02:02:05.211 -07 000000610 INF: Z Motor: Moving to -0.129796 mm, started at -0.136763 mm, distance = 6.97 um
17-03-18 02:02:05.211 -07 000000610 INF: FPGA: Xmit ZDACW 28354\n [Z Motor]
17-03-18 02:02:05.211 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:02:05.221 -07 000000610 INF: FPGA: 'ZDACW 28354' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:02:05.221 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:02:05.221 -07 000000462 INF: FPGA: Recv ZDACR 28354
17-03-18 02:02:05.231 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:05.231 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:02:05.381 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:05.381 -07 000000629 INF: FPGA: Recv ZSGSRD 29496
17-03-18 02:02:05.391 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:05.391 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:05.391 -07 000000462 INF: FPGA: Recv ZSGSRD 29499
17-03-18 02:02:05.401 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:05.401 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:05.401 -07 000000579 INF: FPGA: Recv ZSGSRD 29495
17-03-18 02:02:05.411 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:05.411 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:05.411 -07 000000462 INF: FPGA: Recv ZSGSRD 29490
17-03-18 02:02:05.421 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:05.421 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:05.421 -07 000000437 INF: FPGA: Recv ZSGSRD 29489
17-03-18 02:02:05.431 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:05.431 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:05.431 -07 000000629 INF: FPGA: Recv ZSGSRD 29495
17-03-18 02:02:05.441 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:05.441 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:05.441 -07 000000579 INF: FPGA: Recv ZSGSRD 29494
17-03-18 02:02:05.451 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:05.451 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:05.451 -07 000000579 INF: FPGA: Recv ZSGSRD 29493
17-03-18 02:02:05.461 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:05.461 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:05.461 -07 000000591 INF: FPGA: Recv ZSGSRD 29493
17-03-18 02:02:05.471 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:05.471 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:05.471 -07 000000629 INF: FPGA: Recv ZSGSRD 29495
17-03-18 02:02:05.481 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:05.481 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:02:05.481 -07 000000579 INF: FPGA: Recv ZPIEZORD 25027
17-03-18 02:02:05.491 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:05.491 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.327 V. Piezo Error = -9.8 V.
17-03-18 02:02:05.491 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29494 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29494 (-129.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29489 (-129.0 uncal um), Max = 29499 (-129.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:02:05.491 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29494, posNoise = 5, negNoise = 5
17-03-18 02:02:05.491 -07 000000610 INF: Z Motor: After move to -0.129796, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:02:05.491 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:02:05.491 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:02:05.491 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:02:05.491 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:02:05.491 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:02:05.491 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:02:05.491 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:02:05.491 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:02:05.491 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:02:05.491 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:02:05.491 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:02:05.491 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:02:05.491 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:02:05.501 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:02:05.501 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:02:05.501 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:02:05.501 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:02:05.511 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:02:05.511 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:02:05.511 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:02:05.511 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:02:05.521 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28531 150\n [Camera]
17-03-18 02:02:05.710 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:02:06.110 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:02:06.110 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:02:06.110 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:02:06.110 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:02:06.110 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:02:06.110 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:02:06.110 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:02:06.110 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:02:06.110 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:02:06.120 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:02:06.300 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28531 777
17-03-18 02:02:06.450 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:02:06.510 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:02:06.510 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:02:06.510 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:02:06.510 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:02:06.510 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:06.510 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 02:02:06.510 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:02:06.510 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:06.510 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:02:06.510 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:02:06.510 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:02:06.520 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 02:02:06.640 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:02:06.640 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:02:06.640 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:02:06.640 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:02:06.640 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:02:06.640 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:02:06.640 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:02:06.640 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:02:06.640 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:02:06.640 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:02:06.830 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 02:02:06.830 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:02:06.830 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28531 150' command took 2 ms to send, 1304 ms to get response, and 1314 ms overall
17-03-18 02:02:06.830 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:02:06.830 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.129799064920233. ------
17-03-18 02:02:06.840 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:02:06.840 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13642 mm
17-03-18 02:02:06.840 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:02:06.840 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 02:02:06.840 -07 000000462 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-18 02:02:06.840 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 29800, sync = True, waitForSettling = False)
17-03-18 02:02:06.840 -07 000000579 INF: Z Motor: Moving to -0.136416 mm, started at -0.129799 mm, distance = -6.62 um
17-03-18 02:02:06.840 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:02:06.850 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:02:06.850 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:02:06.850 -07 000000444 INF: FPGA: Recv YRDPOS 139685
17-03-18 02:02:06.860 -07 000000579 INF: FPGA: Xmit ZDACW 29800\n [Z Motor]
17-03-18 02:02:06.860 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:02:06.860 -07 000000462 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:02:06.860 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:02:06.860 -07 000000462 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:02:06.860 -07 000000462 INF: Y Motor: Moving 1339 steps-15
17-03-18 02:02:06.870 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:02:06.870 -07 000000579 INF: FPGA: 'ZDACW 29800' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:02:06.880 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:02:06.890 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:02:06.890 -07 000000502 INF: FPGA: Recv ZDACR 29800
17-03-18 02:02:06.900 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:02:06.900 -07 000000579 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 02:02:06.910 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 4.020806,
17-03-18 02:02:07.050 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 02:02:07.050 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:02:07.050 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:07.050 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 02:02:07.050 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 02:02:07.050 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:07.050 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:02:07.050 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 02:02:07.050 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:02:07.060 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 02:02:07.070 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:02:07.070 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:02:07.250 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 02:02:07.250 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 02:02:07.300 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:02:07.300 -07 000000502 INF: FPGA: Recv YRDPOS 141368
17-03-18 02:02:07.310 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:02:07.310 -07 000000462 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:02:07.310 -07 000000462 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 02:02:07.310 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.838 mm, average velocity = 2.126 mm/sec
17-03-18 02:02:08.260 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:02:08.260 -07 000000579 INF: FPGA: Recv YRDPOS 141368
17-03-18 02:02:08.270 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:02:08.270 -07 000000462 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:02:08.290 -07 000000462 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:02:08.290 -07 000000462 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:02:08.290 -07 000000462 INF: Y Motor: Moved to 69.0273 after 1453 ms (table move)
17-03-18 02:02:08.300 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136416 mm (DAC = 29800)
17-03-18 02:02:08.300 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:08.300 -07 000000462 INF: FPGA: Recv ZSGSRD 30529
17-03-18 02:02:08.310 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:02:08.310 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:08.310 -07 000000561 INF: FPGA: Recv ZSGSRD 30530
17-03-18 02:02:08.320 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:08.320 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:08.320 -07 000000591 INF: FPGA: Recv ZSGSRD 30523
17-03-18 02:02:08.330 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:08.330 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:08.330 -07 000000611 INF: FPGA: Recv ZSGSRD 30530
17-03-18 02:02:08.340 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:08.340 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:08.340 -07 000000608 INF: FPGA: Recv ZSGSRD 30522
17-03-18 02:02:08.350 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:08.350 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:08.350 -07 000000462 INF: FPGA: Recv ZSGSRD 30532
17-03-18 02:02:08.360 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:08.360 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:08.360 -07 000000585 INF: FPGA: Recv ZSGSRD 30528
17-03-18 02:02:08.370 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:08.370 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:08.370 -07 000000569 INF: FPGA: Recv ZSGSRD 30520
17-03-18 02:02:08.380 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:08.380 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:08.380 -07 000000608 INF: FPGA: Recv ZSGSRD 30526
17-03-18 02:02:08.390 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:08.390 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:08.390 -07 000000462 INF: FPGA: Recv ZSGSRD 30526
17-03-18 02:02:08.400 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:08.400 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:02:08.400 -07 000000512 INF: FPGA: Recv ZPIEZORD 26396
17-03-18 02:02:08.410 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:08.410 -07 000000629 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.547 V. Piezo Error = -9.1 V.
17-03-18 02:02:08.410 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30527 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30527 (-135.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30520 (-135.6 uncal um), Max = 30532 (-135.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:02:08.410 -07 000000629 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30527, posNoise = 5, negNoise = 7
17-03-18 02:02:08.410 -07 000000629 INF: Z Motor: After move to -0.136416, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:02:08.410 -07 000000629 INF: Z Motor: Settle wait time = 1455 ms, measure time = 110 ms (allowed 150 ms), total time = 1565 ms
17-03-18 02:02:08.410 -07 000000629 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:02:08.450 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-18 02:02:08.450 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:02:08.450 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:02:08.450 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:02:08.450 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:02:08.450 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:02:08.450 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:02:08.450 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:02:08.450 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:02:08.450 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:02:08.460 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:02:08.460 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:02:08.460 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:02:08.460 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:02:08.470 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:02:08.510 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:02:08.810 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:02:08.810 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:02:08.810 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:02:08.810 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 644204472, 0x0, 559484976) start.
17-03-18 02:02:08.850 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:02:08.850 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 02:02:08.850 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 02:02:08.930 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 644204472, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:02:08.930 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:08.930 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:02:08.930 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:02:08.950 -07 000000444 INF: Autofocus start
17-03-18 02:02:08.950 -07 000000444 INF: MeasureProfile start
17-03-18 02:02:08.950 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:02:08.950 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:02:08.960 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:02:08.960 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:02:08.960 -07 000000444 INF: MeasureProfile done
17-03-18 02:02:08.960 -07 000000444 INF: X=32  Z correction [um]=0.1299841
17-03-18 02:02:08.960 -07 000000444 INF: Autofocus finished
17-03-18 02:02:09.160 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:02:09.160 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:02:09.160 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.136435276062672. ----------
17-03-18 02:02:09.170 -07 000000610 INF: Cycle	94	Tile	12	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:02:09.170 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28341, sync = True, waitForSettling = True)
17-03-18 02:02:09.170 -07 000000610 INF: Z Motor: Moving to -0.129737 mm, started at -0.136435 mm, distance = 6.70 um
17-03-18 02:02:09.170 -07 000000610 INF: FPGA: Xmit ZDACW 28341\n [Z Motor]
17-03-18 02:02:09.170 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 02:02:09.180 -07 000000610 INF: FPGA: 'ZDACW 28341' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:02:09.180 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:02:09.180 -07 000000585 INF: FPGA: Recv ZDACR 28341
17-03-18 02:02:09.190 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:09.190 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:02:09.340 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:09.340 -07 000000447 INF: FPGA: Recv ZSGSRD 29480
17-03-18 02:02:09.350 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:02:09.350 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:09.350 -07 000000611 INF: FPGA: Recv ZSGSRD 29484
17-03-18 02:02:09.360 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:09.360 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:09.360 -07 000000629 INF: FPGA: Recv ZSGSRD 29486
17-03-18 02:02:09.370 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:09.370 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:09.370 -07 000000502 INF: FPGA: Recv ZSGSRD 29483
17-03-18 02:02:09.380 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:09.380 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:09.380 -07 000000447 INF: FPGA: Recv ZSGSRD 29485
17-03-18 02:02:09.390 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:09.390 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:09.390 -07 000000462 INF: FPGA: Recv ZSGSRD 29486
17-03-18 02:02:09.400 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:09.400 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:09.400 -07 000000579 INF: FPGA: Recv ZSGSRD 29486
17-03-18 02:02:09.410 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:09.410 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:09.410 -07 000000437 INF: FPGA: Recv ZSGSRD 29484
17-03-18 02:02:09.420 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:09.420 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:09.420 -07 000000447 INF: FPGA: Recv ZSGSRD 29485
17-03-18 02:02:09.430 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:09.430 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:09.430 -07 000000444 INF: FPGA: Recv ZSGSRD 29486
17-03-18 02:02:09.440 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:09.440 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:02:09.440 -07 000000611 INF: FPGA: Recv ZPIEZORD 25047
17-03-18 02:02:09.450 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:09.450 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.325 V. Piezo Error = -9.7 V.
17-03-18 02:02:09.450 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29484 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29485 (-129.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29480 (-128.9 uncal um), Max = 29486 (-129.0 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:02:09.450 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29484, posNoise = 2, negNoise = 4
17-03-18 02:02:09.450 -07 000000610 INF: Z Motor: After move to -0.129737, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:02:09.450 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:02:09.450 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:02:09.450 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:02:09.450 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:02:09.450 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:02:09.450 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:02:09.450 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:02:09.450 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:02:09.450 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:02:09.460 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:02:09.460 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:02:09.460 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:02:09.460 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:02:09.460 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:02:09.460 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:02:09.460 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:02:09.460 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:02:09.470 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:02:09.470 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:02:09.470 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:02:09.470 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:02:09.470 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28518 150\n [Camera]
17-03-18 02:02:09.670 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:02:10.069 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:02:10.069 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:02:10.069 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:02:10.069 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:02:10.069 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:02:10.069 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:02:10.069 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:02:10.069 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:02:10.069 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:02:10.069 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:02:10.259 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28518 777
17-03-18 02:02:10.409 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:02:10.459 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:02:10.459 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:02:10.459 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:10.459 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 02:02:10.469 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:02:10.469 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:10.469 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:02:10.469 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:02:10.469 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:02:10.479 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 02:02:10.589 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:02:10.589 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:02:10.589 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:02:10.589 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:02:10.589 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 02:02:10.599 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:02:10.599 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:02:10.599 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:02:10.599 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:02:10.599 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 02:02:10.789 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 02:02:10.789 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:02:10.789 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28518 150' command took 2 ms to send, 1310 ms to get response, and 1315 ms overall
17-03-18 02:02:10.789 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:02:10.789 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.129734822798815. ------
17-03-18 02:02:10.789 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:02:10.789 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13619 mm
17-03-18 02:02:10.789 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:02:10.789 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29750, sync = True, waitForSettling = False)
17-03-18 02:02:10.789 -07 000000462 INF: Z Motor: Moving to -0.136187 mm, started at -0.129735 mm, distance = -6.45 um
17-03-18 02:02:10.789 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:02:10.789 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 02:02:10.799 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:02:10.799 -07 000000462 INF: FPGA: Xmit ZDACW 29750\n [Z Motor]
17-03-18 02:02:10.799 -07 000000424 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 02:02:10.799 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:02:10.809 -07 000000462 INF: FPGA: 'ZDACW 29750' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:02:10.809 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:02:10.809 -07 000000444 INF: FPGA: Recv YRDPOS 141369
17-03-18 02:02:10.819 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:02:10.819 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:02:10.819 -07 000000424 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:02:10.819 -07 000000424 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:02:10.819 -07 000000424 INF: Y Motor: Moving 1352 steps-31
17-03-18 02:02:10.829 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:02:10.829 -07 000000444 INF: FPGA: Recv ZDACR 29750
17-03-18 02:02:10.839 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:02:10.839 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:02:10.839 -07 000000462 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 02:02:10.999 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:02:10.999 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:02:10.999 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:10.999 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:02:10.999 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:02:10.999 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:10.999 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:02:10.999 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:02:10.999 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 02:02:11.009 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:02:11.019 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:02:11.019 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 02:02:11.209 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 02:02:11.209 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 02:02:11.259 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:02:11.259 -07 000000561 INF: FPGA: Recv YRDPOS 143080
17-03-18 02:02:11.269 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:02:11.269 -07 000000424 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:02:11.269 -07 000000424 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:02:11.269 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.145 mm/sec
17-03-18 02:02:11.509 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:02:11.509 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:02:12.219 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:02:12.219 -07 000000569 INF: FPGA: Recv YRDPOS 143080
17-03-18 02:02:12.229 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:02:12.229 -07 000000424 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:02:12.249 -07 000000424 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:02:12.249 -07 000000424 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:02:12.249 -07 000000424 INF: Y Motor: Moved to 69.8633 after 1456 ms (table move)
17-03-18 02:02:12.259 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136187 mm (DAC = 29750)
17-03-18 02:02:12.269 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:12.269 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 4.016692,
17-03-18 02:02:12.269 -07 000000585 INF: FPGA: Recv ZSGSRD 30495
17-03-18 02:02:12.279 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:02:12.299 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:12.299 -07 000000462 INF: FPGA: Recv ZSGSRD 30485
17-03-18 02:02:12.309 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:02:12.309 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:12.309 -07 000000502 INF: FPGA: Recv ZSGSRD 30489
17-03-18 02:02:12.319 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:12.329 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:12.329 -07 000000611 INF: FPGA: Recv ZSGSRD 30485
17-03-18 02:02:12.339 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:02:12.339 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:12.339 -07 000000561 INF: FPGA: Recv ZSGSRD 30489
17-03-18 02:02:12.349 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:12.359 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:12.359 -07 000000591 INF: FPGA: Recv ZSGSRD 30496
17-03-18 02:02:12.369 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:02:12.369 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:12.369 -07 000000585 INF: FPGA: Recv ZSGSRD 30487
17-03-18 02:02:12.379 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:12.379 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:12.379 -07 000000462 INF: FPGA: Recv ZSGSRD 30492
17-03-18 02:02:12.389 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:12.389 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:12.389 -07 000000569 INF: FPGA: Recv ZSGSRD 30485
17-03-18 02:02:12.399 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:12.399 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:12.399 -07 000000437 INF: FPGA: Recv ZSGSRD 30491
17-03-18 02:02:12.409 -07 000000447 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:12.409 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:02:12.409 -07 000000502 INF: FPGA: Recv ZPIEZORD 26350
17-03-18 02:02:12.419 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:12.419 -07 000000447 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.540 V. Piezo Error = -9.1 V.
17-03-18 02:02:12.419 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.2 um, Read 10 ADC samples: Avg = 30489 (-135.4 uncal um), Error = 0.8 uncal um, Median = 30489 (-135.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30485 (-135.4 uncal um), Max = 30496 (-135.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:02:12.419 -07 000000447 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30489, posNoise = 7, negNoise = 4
17-03-18 02:02:12.419 -07 000000447 INF: Z Motor: After move to -0.136187, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:02:12.419 -07 000000447 INF: Z Motor: Settle wait time = 1462 ms, measure time = 160 ms (allowed 150 ms), total time = 1622 ms
17-03-18 02:02:12.419 -07 000000447 INF: Z Motor: Warning: Actual position measuring time = 160 ms, longer than max expected time of 150 ms
17-03-18 02:02:12.419 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 02:02:12.419 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:02:12.419 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:02:12.419 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:02:12.419 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:02:12.419 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:02:12.419 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:02:12.419 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:02:12.419 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:02:12.419 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:02:12.429 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:02:12.429 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:02:12.439 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 02:02:12.439 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:02:12.439 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:02:12.489 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:02:12.789 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:02:12.789 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:02:12.789 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:02:12.789 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 663285856, 0x0, 559484976) start.
17-03-18 02:02:12.829 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:02:12.829 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 02:02:12.829 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:02:12.899 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 663285856, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:02:12.899 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:12.899 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:02:12.899 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:02:12.929 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:02:12.929 -07 000000502 INF: Autofocus start
17-03-18 02:02:12.929 -07 000000502 INF: MeasureProfile start
17-03-18 02:02:12.929 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:02:12.939 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:02:12.939 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:02:12.939 -07 000000502 INF: MeasureProfile done
17-03-18 02:02:12.939 -07 000000502 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:02:12.939 -07 000000502 INF: Autofocus finished
17-03-18 02:02:13.139 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:02:13.139 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 02:02:13.139 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.136191156001285. ----------
17-03-18 02:02:13.139 -07 000000610 INF: Cycle	94	Tile	13	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:02:13.149 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28257, sync = True, waitForSettling = True)
17-03-18 02:02:13.149 -07 000000610 INF: Z Motor: Moving to -0.129352 mm, started at -0.136191 mm, distance = 6.84 um
17-03-18 02:02:13.149 -07 000000610 INF: FPGA: Xmit ZDACW 28257\n [Z Motor]
17-03-18 02:02:13.149 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:02:13.159 -07 000000610 INF: FPGA: 'ZDACW 28257' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:02:13.159 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:02:13.159 -07 000000629 INF: FPGA: Recv ZDACR 28257
17-03-18 02:02:13.169 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:13.169 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:02:13.319 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:13.319 -07 000000462 INF: FPGA: Recv ZSGSRD 29430
17-03-18 02:02:13.329 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:13.329 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:13.329 -07 000000608 INF: FPGA: Recv ZSGSRD 29425
17-03-18 02:02:13.339 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:13.339 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:13.339 -07 000000591 INF: FPGA: Recv ZSGSRD 29424
17-03-18 02:02:13.349 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:13.349 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:13.349 -07 000000629 INF: FPGA: Recv ZSGSRD 29415
17-03-18 02:02:13.359 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:13.359 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:13.359 -07 000000462 INF: FPGA: Recv ZSGSRD 29422
17-03-18 02:02:13.369 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:13.369 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:13.369 -07 000000512 INF: FPGA: Recv ZSGSRD 29430
17-03-18 02:02:13.379 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:13.379 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:13.379 -07 000000591 INF: FPGA: Recv ZSGSRD 29432
17-03-18 02:02:13.389 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:13.389 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:13.389 -07 000000569 INF: FPGA: Recv ZSGSRD 29420
17-03-18 02:02:13.399 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:13.399 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:13.399 -07 000000444 INF: FPGA: Recv ZSGSRD 29427
17-03-18 02:02:13.409 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:13.409 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:13.409 -07 000000447 INF: FPGA: Recv ZSGSRD 29426
17-03-18 02:02:13.419 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:13.419 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:02:13.419 -07 000000591 INF: FPGA: Recv ZPIEZORD 24987
17-03-18 02:02:13.429 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:13.429 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.312 V. Piezo Error = -9.7 V.
17-03-18 02:02:13.429 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29425 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29426 (-128.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29415 (-128.5 uncal um), Max = 29432 (-128.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 02:02:13.429 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29425, posNoise = 7, negNoise = 10
17-03-18 02:02:13.429 -07 000000610 INF: Z Motor: After move to -0.129352, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:02:13.429 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:02:13.429 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:02:13.429 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:02:13.429 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:02:13.429 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:02:13.429 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:02:13.429 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:02:13.429 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:02:13.429 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:02:13.429 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:02:13.429 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:02:13.429 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:02:13.429 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:02:13.429 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:02:13.439 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:02:13.439 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:02:13.439 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:02:13.439 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:02:13.439 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:02:13.439 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:02:13.439 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:02:13.449 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28434 150\n [Camera]
17-03-18 02:02:13.649 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:02:14.038 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:02:14.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:02:14.038 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:02:14.038 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:02:14.038 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 02:02:14.038 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:02:14.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:02:14.038 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:02:14.038 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:02:14.038 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 02:02:14.228 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28434 777
17-03-18 02:02:14.378 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:02:14.438 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 02:02:14.438 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 02:02:14.438 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:02:14.438 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:14.438 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:02:14.438 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:14.438 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:02:14.438 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:02:14.438 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:02:14.448 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 02:02:14.568 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:02:14.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:02:14.568 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:02:14.568 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:02:14.568 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 02:02:14.568 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:02:14.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:02:14.568 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:02:14.568 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:02:14.578 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 02:02:14.758 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 02:02:14.758 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:02:14.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28434 150' command took 2 ms to send, 1306 ms to get response, and 1314 ms overall
17-03-18 02:02:14.758 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:02:14.758 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.129355794282451. ------
17-03-18 02:02:14.768 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:02:14.768 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13525 mm
17-03-18 02:02:14.768 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:02:14.768 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 02:02:14.768 -07 000000447 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-18 02:02:14.768 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:02:14.768 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 29545, sync = True, waitForSettling = False)
17-03-18 02:02:14.768 -07 000000585 INF: Z Motor: Moving to -0.135248 mm, started at -0.129356 mm, distance = -5.89 um
17-03-18 02:02:14.778 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:02:14.778 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:02:14.778 -07 000000502 INF: FPGA: Recv YRDPOS 143081
17-03-18 02:02:14.788 -07 000000585 INF: FPGA: Xmit ZDACW 29545\n [Z Motor]
17-03-18 02:02:14.788 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:02:14.788 -07 000000447 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:02:14.788 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:02:14.788 -07 000000447 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:02:14.788 -07 000000447 INF: Y Motor: Moving 1342 steps-19
17-03-18 02:02:14.798 -07 000000585 INF: FPGA: 'ZDACW 29545' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:02:14.798 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:02:14.808 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:02:14.818 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:02:14.818 -07 000000579 INF: FPGA: Recv ZDACR 29545
17-03-18 02:02:14.828 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 02:02:14.828 -07 000000585 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 02:02:14.968 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 02:02:14.968 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:02:14.968 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:14.968 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 02:02:14.968 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:02:14.968 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:14.968 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:02:14.978 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:02:14.978 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:02:14.978 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 02:02:14.998 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:02:14.998 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 225 ms overall
17-03-18 02:02:15.178 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 02:02:15.178 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 02:02:15.228 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:02:15.228 -07 000000444 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:02:15.238 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:02:15.238 -07 000000447 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:02:15.238 -07 000000447 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:02:15.238 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.130 mm/sec
17-03-18 02:02:16.188 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:02:16.188 -07 000000444 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:02:16.198 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:02:16.198 -07 000000447 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:02:16.218 -07 000000447 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:02:16.218 -07 000000447 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:02:16.218 -07 000000447 INF: Y Motor: Moved to 70.6885 after 1451 ms (table move)
17-03-18 02:02:16.228 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135248 mm (DAC = 29545)
17-03-18 02:02:16.228 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:16.228 -07 000000585 INF: FPGA: Recv ZSGSRD 30341
17-03-18 02:02:16.238 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:02:16.238 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:16.238 -07 000000437 INF: FPGA: Recv ZSGSRD 30342
17-03-18 02:02:16.248 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:16.248 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:16.248 -07 000000611 INF: FPGA: Recv ZSGSRD 30341
17-03-18 02:02:16.258 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:16.258 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:16.258 -07 000000447 INF: FPGA: Recv ZSGSRD 30350
17-03-18 02:02:16.268 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:16.268 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:16.268 -07 000000585 INF: FPGA: Recv ZSGSRD 30344
17-03-18 02:02:16.278 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:16.278 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:16.278 -07 000000462 INF: FPGA: Recv ZSGSRD 30339
17-03-18 02:02:16.288 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:16.288 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:16.288 -07 000000561 INF: FPGA: Recv ZSGSRD 30344
17-03-18 02:02:16.298 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:16.298 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:16.298 -07 000000444 INF: FPGA: Recv ZSGSRD 30338
17-03-18 02:02:16.308 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:16.308 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:16.308 -07 000000569 INF: FPGA: Recv ZSGSRD 30347
17-03-18 02:02:16.318 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:16.318 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:16.318 -07 000000502 INF: FPGA: Recv ZSGSRD 30345
17-03-18 02:02:16.328 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:16.328 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:02:16.328 -07 000000561 INF: FPGA: Recv ZPIEZORD 26218
17-03-18 02:02:16.338 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:16.338 -07 000000608 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.508 V. Piezo Error = -9.1 V.
17-03-18 02:02:16.338 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.2 um, Read 10 ADC samples: Avg = 30343 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30343 (-134.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30338 (-134.4 uncal um), Max = 30350 (-134.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:02:16.338 -07 000000608 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30343, posNoise = 7, negNoise = 5
17-03-18 02:02:16.338 -07 000000608 INF: Z Motor: After move to -0.135248, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:02:16.338 -07 000000608 INF: Z Motor: Settle wait time = 1455 ms, measure time = 109 ms (allowed 150 ms), total time = 1564 ms
17-03-18 02:02:16.338 -07 000000608 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:02:16.388 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 02:02:16.388 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:02:16.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:02:16.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:02:16.388 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:02:16.388 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:02:16.388 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:02:16.388 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:02:16.388 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:02:16.388 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:02:16.398 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:02:16.398 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:02:16.408 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 02:02:16.408 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:02:16.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:02:16.448 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:02:16.508 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:02:16.508 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:02:16.748 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:02:16.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:02:16.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:02:16.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 02:02:16.788 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:02:16.788 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 02:02:16.788 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 02:02:16.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 02:02:16.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:16.878 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:02:16.878 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 02:02:16.888 -07 000000437 INF: Autofocus start
17-03-18 02:02:16.888 -07 000000437 INF: MeasureProfile start
17-03-18 02:02:16.888 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:02:16.888 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:02:16.898 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:02:16.898 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:02:16.898 -07 000000437 INF: MeasureProfile done
17-03-18 02:02:16.898 -07 000000437 INF: X=128  Z correction [um]=0.5917814
17-03-18 02:02:16.898 -07 000000437 INF: Autofocus finished
17-03-18 02:02:17.098 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:02:17.098 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:02:17.098 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.135253221028588. ----------
17-03-18 02:02:17.098 -07 000000610 INF: Cycle	94	Tile	14	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:02:17.108 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28187, sync = True, waitForSettling = True)
17-03-18 02:02:17.108 -07 000000610 INF: Z Motor: Moving to -0.129032 mm, started at -0.135253 mm, distance = 6.22 um
17-03-18 02:02:17.108 -07 000000610 INF: FPGA: Xmit ZDACW 28187\n [Z Motor]
17-03-18 02:02:17.108 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 02:02:17.118 -07 000000610 INF: FPGA: 'ZDACW 28187' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:02:17.118 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:02:17.118 -07 000000424 INF: FPGA: Recv ZDACR 28187
17-03-18 02:02:17.128 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:17.128 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:02:17.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:17.278 -07 000000611 INF: FPGA: Recv ZSGSRD 29377
17-03-18 02:02:17.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:02:17.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:17.298 -07 000000512 INF: FPGA: Recv ZSGSRD 29370
17-03-18 02:02:17.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:02:17.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:17.318 -07 000000591 INF: FPGA: Recv ZSGSRD 29375
17-03-18 02:02:17.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:02:17.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:17.338 -07 000000579 INF: FPGA: Recv ZSGSRD 29377
17-03-18 02:02:17.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:02:17.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:17.368 -07 000000512 INF: FPGA: Recv ZSGSRD 29377
17-03-18 02:02:17.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:02:17.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:17.388 -07 000000447 INF: FPGA: Recv ZSGSRD 29378
17-03-18 02:02:17.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:02:17.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:17.398 -07 000000591 INF: FPGA: Recv ZSGSRD 29376
17-03-18 02:02:17.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:17.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:17.408 -07 000000608 INF: FPGA: Recv ZSGSRD 29378
17-03-18 02:02:17.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:17.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:17.418 -07 000000585 INF: FPGA: Recv ZSGSRD 29380
17-03-18 02:02:17.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:17.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:17.428 -07 000000447 INF: FPGA: Recv ZSGSRD 29377
17-03-18 02:02:17.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:17.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:02:17.438 -07 000000579 INF: FPGA: Recv ZPIEZORD 24977
17-03-18 02:02:17.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:17.448 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.301 V. Piezo Error = -9.7 V.
17-03-18 02:02:17.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.0 um, Read 10 ADC samples: Avg = 29376 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29377 (-128.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29370 (-128.2 uncal um), Max = 29380 (-128.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:02:17.448 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29376, posNoise = 4, negNoise = 6
17-03-18 02:02:17.448 -07 000000610 INF: Z Motor: After move to -0.129032, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:02:17.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 339 ms)
17-03-18 02:02:17.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:02:17.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:02:17.448 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:02:17.448 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:02:17.448 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:02:17.448 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:02:17.448 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:02:17.448 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:02:17.448 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:02:17.448 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:02:17.448 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:02:17.448 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:02:17.458 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:02:17.458 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:02:17.458 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:02:17.458 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:02:17.468 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:02:17.468 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:02:17.468 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:02:17.468 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:02:17.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28363 150\n [Camera]
17-03-18 02:02:17.668 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 02:02:17.678 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 3.990831,
17-03-18 02:02:18.058 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:02:18.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:02:18.058 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:02:18.058 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:02:18.058 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 02:02:18.058 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:02:18.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:02:18.058 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:02:18.058 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:02:18.058 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 02:02:18.247 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28363 778
17-03-18 02:02:18.397 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:02:18.447 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 02:02:18.447 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:02:18.447 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:18.447 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:02:18.447 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 02:02:18.457 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:02:18.457 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:18.457 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:02:18.457 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:02:18.457 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:02:18.587 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:02:18.587 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:02:18.587 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:02:18.587 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:02:18.587 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 02:02:18.587 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:02:18.587 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:02:18.587 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:02:18.587 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:02:18.597 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 02:02:18.777 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-18 02:02:18.777 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:02:18.777 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28363 150' command took 2 ms to send, 1308 ms to get response, and 1315 ms overall
17-03-18 02:02:18.787 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:02:18.787 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.129041007887505. ------
17-03-18 02:02:18.787 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:02:18.787 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13573 mm
17-03-18 02:02:18.787 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:02:18.787 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:02:18.797 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:02:18.797 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 02:02:18.797 -07 000000447 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 02:02:18.797 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:02:18.797 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29651, sync = True, waitForSettling = False)
17-03-18 02:02:18.797 -07 000000512 INF: Z Motor: Moving to -0.135734 mm, started at -0.129041 mm, distance = -6.69 um
17-03-18 02:02:18.807 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:02:18.807 -07 000000437 INF: FPGA: Recv YRDPOS 144771
17-03-18 02:02:18.817 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:02:18.817 -07 000000447 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:02:18.817 -07 000000512 INF: FPGA: Xmit ZDACW 29651\n [Z Motor]
17-03-18 02:02:18.817 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 02:02:18.817 -07 000000447 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:02:18.817 -07 000000447 INF: Y Motor: Moving 1350 steps-29
17-03-18 02:02:18.827 -07 000000512 INF: FPGA: 'ZDACW 29651' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:02:18.827 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:02:18.827 -07 000000561 INF: FPGA: Recv ZDACR 29651
17-03-18 02:02:18.837 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:02:18.837 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:18.837 -07 000000512 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 02:02:18.987 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 02:02:18.997 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:02:18.997 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:18.997 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:02:18.997 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:02:18.997 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:18.997 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:02:18.997 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 02:02:18.997 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:02:18.997 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:02:18.997 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 02:02:19.007 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:02:19.207 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 02:02:19.207 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 02:02:19.257 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:02:19.257 -07 000000579 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:02:19.267 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:02:19.267 -07 000000447 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:02:19.267 -07 000000447 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:02:19.267 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.844 mm, average velocity = 2.153 mm/sec
17-03-18 02:02:20.217 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:02:20.217 -07 000000585 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:02:20.227 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:02:20.227 -07 000000447 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:02:20.247 -07 000000447 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:02:20.247 -07 000000447 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:02:20.247 -07 000000447 INF: Y Motor: Moved to 71.5190 after 1457 ms (table move)
17-03-18 02:02:20.257 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135734 mm (DAC = 29651)
17-03-18 02:02:20.257 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:20.257 -07 000000437 INF: FPGA: Recv ZSGSRD 30431
17-03-18 02:02:20.267 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:02:20.267 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:20.267 -07 000000447 INF: FPGA: Recv ZSGSRD 30421
17-03-18 02:02:20.277 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:20.277 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:20.277 -07 000000561 INF: FPGA: Recv ZSGSRD 30420
17-03-18 02:02:20.287 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:20.287 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:20.287 -07 000000424 INF: FPGA: Recv ZSGSRD 30416
17-03-18 02:02:20.297 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:20.297 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:20.297 -07 000000512 INF: FPGA: Recv ZSGSRD 30420
17-03-18 02:02:20.307 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:20.307 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:20.307 -07 000000447 INF: FPGA: Recv ZSGSRD 30422
17-03-18 02:02:20.317 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:20.317 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:20.317 -07 000000561 INF: FPGA: Recv ZSGSRD 30422
17-03-18 02:02:20.327 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:20.327 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:20.327 -07 000000424 INF: FPGA: Recv ZSGSRD 30411
17-03-18 02:02:20.337 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:20.337 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:20.337 -07 000000512 INF: FPGA: Recv ZSGSRD 30419
17-03-18 02:02:20.347 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:02:20.347 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:20.347 -07 000000447 INF: FPGA: Recv ZSGSRD 30420
17-03-18 02:02:20.357 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:20.357 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:02:20.357 -07 000000591 INF: FPGA: Recv ZPIEZORD 26335
17-03-18 02:02:20.367 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:20.367 -07 000000611 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.524 V. Piezo Error = -9.0 V.
17-03-18 02:02:20.367 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30420 (-135.0 uncal um), Error = 0.8 uncal um, Median = 30420 (-135.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30411 (-134.9 uncal um), Max = 30431 (-135.0 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:02:20.367 -07 000000611 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30420, posNoise = 11, negNoise = 9
17-03-18 02:02:20.367 -07 000000611 INF: Z Motor: After move to -0.135734, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:02:20.367 -07 000000611 INF: Z Motor: Settle wait time = 1461 ms, measure time = 108 ms (allowed 150 ms), total time = 1569 ms
17-03-18 02:02:20.367 -07 000000611 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:02:20.417 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 02:02:20.417 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:02:20.417 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:02:20.417 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:02:20.417 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:02:20.417 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:02:20.417 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:02:20.417 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:02:20.417 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:02:20.417 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:02:20.427 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:02:20.427 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:02:20.437 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:02:20.437 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:02:20.437 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:02:20.487 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:02:20.787 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:02:20.787 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:02:20.787 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:02:20.787 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-18 02:02:20.827 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:02:20.827 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 02:02:20.827 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 02:02:20.897 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:02:20.897 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:20.907 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:02:20.907 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:02:20.927 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:02:20.927 -07 000000502 INF: Autofocus start
17-03-18 02:02:20.927 -07 000000502 INF: MeasureProfile start
17-03-18 02:02:20.927 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:02:20.937 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:02:20.937 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:02:20.937 -07 000000502 INF: MeasureProfile done
17-03-18 02:02:20.937 -07 000000502 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:02:20.937 -07 000000502 INF: Autofocus finished
17-03-18 02:02:21.137 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:02:21.137 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:02:21.137 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.135747885363503. ----------
17-03-18 02:02:21.137 -07 000000610 INF: Cycle	94	Tile	15	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:02:21.147 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28158, sync = True, waitForSettling = True)
17-03-18 02:02:21.147 -07 000000610 INF: Z Motor: Moving to -0.128899 mm, started at -0.135748 mm, distance = 6.85 um
17-03-18 02:02:21.147 -07 000000610 INF: FPGA: Xmit ZDACW 28158\n [Z Motor]
17-03-18 02:02:21.147 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 02:02:21.157 -07 000000610 INF: FPGA: 'ZDACW 28158' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:02:21.157 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:02:21.157 -07 000000591 INF: FPGA: Recv ZDACR 28158
17-03-18 02:02:21.167 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:21.167 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:02:21.317 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:21.317 -07 000000608 INF: FPGA: Recv ZSGSRD 29355
17-03-18 02:02:21.327 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:02:21.327 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:21.327 -07 000000629 INF: FPGA: Recv ZSGSRD 29359
17-03-18 02:02:21.337 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:21.337 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:21.337 -07 000000611 INF: FPGA: Recv ZSGSRD 29355
17-03-18 02:02:21.347 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:21.347 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:21.347 -07 000000447 INF: FPGA: Recv ZSGSRD 29358
17-03-18 02:02:21.357 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:21.357 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:21.357 -07 000000608 INF: FPGA: Recv ZSGSRD 29357
17-03-18 02:02:21.367 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:21.367 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:21.367 -07 000000424 INF: FPGA: Recv ZSGSRD 29357
17-03-18 02:02:21.377 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:21.377 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:21.377 -07 000000512 INF: FPGA: Recv ZSGSRD 29358
17-03-18 02:02:21.387 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:21.387 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:21.387 -07 000000611 INF: FPGA: Recv ZSGSRD 29352
17-03-18 02:02:21.397 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:21.397 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:21.397 -07 000000591 INF: FPGA: Recv ZSGSRD 29355
17-03-18 02:02:21.407 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:21.407 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:21.407 -07 000000579 INF: FPGA: Recv ZSGSRD 29351
17-03-18 02:02:21.417 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:21.417 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:02:21.417 -07 000000512 INF: FPGA: Recv ZPIEZORD 24919
17-03-18 02:02:21.427 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:21.427 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.297 V. Piezo Error = -9.7 V.
17-03-18 02:02:21.427 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29356 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29356 (-128.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29351 (-128.1 uncal um), Max = 29359 (-128.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:02:21.427 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29356, posNoise = 3, negNoise = 5
17-03-18 02:02:21.427 -07 000000610 INF: Z Motor: After move to -0.128899, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:02:21.427 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:02:21.427 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:02:21.427 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:02:21.427 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:02:21.427 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:02:21.427 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:02:21.427 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:02:21.427 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:02:21.427 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:02:21.427 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:02:21.427 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:02:21.427 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:02:21.427 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:02:21.437 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:02:21.437 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:02:21.437 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:02:21.437 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:02:21.437 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:02:21.447 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:02:21.447 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:02:21.447 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:02:21.447 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28335 150\n [Camera]
17-03-18 02:02:21.507 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:02:21.507 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:02:21.647 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:02:22.037 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:02:22.037 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:02:22.037 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:02:22.037 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:02:22.037 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 02:02:22.037 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:02:22.037 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:02:22.037 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:02:22.037 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:02:22.037 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 02:02:22.227 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28335 777
17-03-18 02:02:22.376 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:02:22.436 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:02:22.436 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:02:22.436 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:22.436 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 02:02:22.436 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:02:22.436 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:22.436 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:02:22.436 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:02:22.436 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:02:22.446 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 02:02:22.566 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1116
17-03-18 02:02:22.566 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1116
17-03-18 02:02:22.566 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:02:22.706 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1116
17-03-18 02:02:22.706 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1116
17-03-18 02:02:22.706 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:02:22.706 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:02:22.706 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 02:02:22.716 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:02:22.716 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:02:22.756 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 02:02:22.756 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:02:22.756 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28335 150' command took 2 ms to send, 1307 ms to get response, and 1314 ms overall
17-03-18 02:02:22.756 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:02:22.756 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.12891252364467. ------
17-03-18 02:02:22.766 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:02:22.766 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13524 mm
17-03-18 02:02:22.766 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:02:22.766 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 02:02:22.766 -07 000000462 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 02:02:22.766 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:02:22.766 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29544, sync = True, waitForSettling = False)
17-03-18 02:02:22.766 -07 000000608 INF: Z Motor: Moving to -0.135244 mm, started at -0.128913 mm, distance = -6.33 um
17-03-18 02:02:22.776 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:02:22.776 -07 000000608 INF: FPGA: Xmit ZDACW 29544\n [Z Motor]
17-03-18 02:02:22.776 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:02:22.786 -07 000000608 INF: FPGA: 'ZDACW 29544' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:02:22.786 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:02:22.786 -07 000000447 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:02:22.796 -07 000000462 INF: FPGA: 'YRDPOS' command took 3 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:02:22.796 -07 000000462 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:02:22.796 -07 000000462 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:02:22.796 -07 000000462 INF: Y Motor: Moving 1350 steps-28
17-03-18 02:02:22.796 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:02:22.806 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:02:22.806 -07 000000585 INF: FPGA: Recv ZDACR 29544
17-03-18 02:02:22.816 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:02:22.816 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:02:22.816 -07 000000608 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 02:02:22.996 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:02:22.996 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 02:02:23.036 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 4.024884,
17-03-18 02:02:23.106 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 02:02:23.106 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:02:23.106 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:23.106 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 02:02:23.106 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:02:23.106 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:23.106 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:02:23.106 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:02:23.106 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 541 ms.
17-03-18 02:02:23.116 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 02:02:23.186 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 02:02:23.186 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:02:23.236 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:02:23.236 -07 000000424 INF: FPGA: Recv YRDPOS 148172
17-03-18 02:02:23.246 -07 000000462 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:02:23.246 -07 000000462 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:02:23.246 -07 000000462 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 02:02:23.246 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-18 02:02:24.196 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:02:24.196 -07 000000629 INF: FPGA: Recv YRDPOS 148173
17-03-18 02:02:24.206 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:02:24.206 -07 000000462 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:02:24.226 -07 000000462 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:02:24.226 -07 000000462 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:02:24.226 -07 000000462 INF: Y Motor: Moved to 72.3501 after 1461 ms (table move)
17-03-18 02:02:24.236 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135244 mm (DAC = 29544)
17-03-18 02:02:24.236 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:24.236 -07 000000591 INF: FPGA: Recv ZSGSRD 30342
17-03-18 02:02:24.246 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:24.246 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:24.246 -07 000000579 INF: FPGA: Recv ZSGSRD 30340
17-03-18 02:02:24.256 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:24.256 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:24.256 -07 000000424 INF: FPGA: Recv ZSGSRD 30341
17-03-18 02:02:24.266 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:24.266 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:24.266 -07 000000611 INF: FPGA: Recv ZSGSRD 30350
17-03-18 02:02:24.276 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:24.276 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:24.276 -07 000000591 INF: FPGA: Recv ZSGSRD 30350
17-03-18 02:02:24.286 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:24.286 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:24.286 -07 000000579 INF: FPGA: Recv ZSGSRD 30337
17-03-18 02:02:24.296 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:24.296 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:24.296 -07 000000569 INF: FPGA: Recv ZSGSRD 30344
17-03-18 02:02:24.306 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:24.306 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:24.306 -07 000000462 INF: FPGA: Recv ZSGSRD 30339
17-03-18 02:02:24.316 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:24.316 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:24.316 -07 000000424 INF: FPGA: Recv ZSGSRD 30343
17-03-18 02:02:24.326 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:24.326 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:24.326 -07 000000579 INF: FPGA: Recv ZSGSRD 30349
17-03-18 02:02:24.336 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:24.336 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:02:24.336 -07 000000569 INF: FPGA: Recv ZPIEZORD 26221
17-03-18 02:02:24.346 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:24.346 -07 000000437 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.508 V. Piezo Error = -9.1 V.
17-03-18 02:02:24.346 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.2 um, Read 10 ADC samples: Avg = 30344 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30342 (-134.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30337 (-134.4 uncal um), Max = 30350 (-134.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:02:24.346 -07 000000437 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30344, posNoise = 6, negNoise = 7
17-03-18 02:02:24.346 -07 000000437 INF: Z Motor: After move to -0.135244, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:02:24.346 -07 000000437 INF: Z Motor: Settle wait time = 1463 ms, measure time = 110 ms (allowed 150 ms), total time = 1573 ms
17-03-18 02:02:24.346 -07 000000437 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:02:24.386 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 02:02:24.386 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:02:24.386 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:02:24.386 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:02:24.386 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:02:24.386 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:02:24.386 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:02:24.386 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:02:24.386 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:02:24.386 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:02:24.396 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 02:02:24.396 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:02:24.406 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 02:02:24.406 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:02:24.406 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:02:24.456 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:02:24.756 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:02:24.756 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:02:24.756 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:02:24.756 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) start.
17-03-18 02:02:24.786 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:02:24.796 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 02:02:24.796 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:02:24.866 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 02:02:24.866 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:24.866 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:02:24.866 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 02:02:24.896 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:02:24.896 -07 000000444 INF: Autofocus start
17-03-18 02:02:24.896 -07 000000444 INF: MeasureProfile start
17-03-18 02:02:24.896 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:02:24.906 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:02:24.906 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:02:24.906 -07 000000444 INF: MeasureProfile done
17-03-18 02:02:24.906 -07 000000444 INF: X=9  Z correction [um]=0.01934518
17-03-18 02:02:24.906 -07 000000444 INF: Autofocus finished
17-03-18 02:02:25.106 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:02:25.106 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 02:02:25.106 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.13525964524073. ----------
17-03-18 02:02:25.106 -07 000000610 INF: Cycle	94	Tile	16	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:02:25.116 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28060, sync = True, waitForSettling = True)
17-03-18 02:02:25.116 -07 000000610 INF: Z Motor: Moving to -0.128450 mm, started at -0.135260 mm, distance = 6.81 um
17-03-18 02:02:25.116 -07 000000610 INF: FPGA: Xmit ZDACW 28060\n [Z Motor]
17-03-18 02:02:25.116 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 02:02:25.126 -07 000000610 INF: FPGA: 'ZDACW 28060' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:02:25.126 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:02:25.126 -07 000000585 INF: FPGA: Recv ZDACR 28060
17-03-18 02:02:25.136 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:25.136 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:02:25.286 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:25.286 -07 000000591 INF: FPGA: Recv ZSGSRD 29291
17-03-18 02:02:25.296 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:02:25.296 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:25.296 -07 000000561 INF: FPGA: Recv ZSGSRD 29287
17-03-18 02:02:25.306 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:25.306 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:25.306 -07 000000608 INF: FPGA: Recv ZSGSRD 29287
17-03-18 02:02:25.316 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:25.316 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:25.316 -07 000000424 INF: FPGA: Recv ZSGSRD 29285
17-03-18 02:02:25.326 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:25.326 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:25.326 -07 000000569 INF: FPGA: Recv ZSGSRD 29287
17-03-18 02:02:25.336 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:25.336 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:25.336 -07 000000437 INF: FPGA: Recv ZSGSRD 29284
17-03-18 02:02:25.346 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:25.346 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:25.346 -07 000000447 INF: FPGA: Recv ZSGSRD 29283
17-03-18 02:02:25.356 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:25.356 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:25.356 -07 000000462 INF: FPGA: Recv ZSGSRD 29288
17-03-18 02:02:25.366 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:25.366 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:25.366 -07 000000444 INF: FPGA: Recv ZSGSRD 29283
17-03-18 02:02:25.376 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:25.376 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:25.376 -07 000000437 INF: FPGA: Recv ZSGSRD 29285
17-03-18 02:02:25.386 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:25.386 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:02:25.386 -07 000000569 INF: FPGA: Recv ZPIEZORD 24808
17-03-18 02:02:25.396 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:25.396 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.282 V. Piezo Error = -9.8 V.
17-03-18 02:02:25.396 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29286 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29286 (-127.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29283 (-127.7 uncal um), Max = 29291 (-127.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:02:25.396 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29286, posNoise = 5, negNoise = 3
17-03-18 02:02:25.396 -07 000000610 INF: Z Motor: After move to -0.128450, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:02:25.396 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:02:25.396 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:02:25.396 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:02:25.396 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:02:25.396 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:02:25.396 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:02:25.396 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:02:25.396 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:02:25.396 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:02:25.396 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:02:25.396 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:02:25.396 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:02:25.396 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:02:25.396 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:02:25.396 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:02:25.396 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:02:25.396 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:02:25.406 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:02:25.406 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 02:02:25.406 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:02:25.406 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:02:25.416 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28237 150\n [Camera]
17-03-18 02:02:25.616 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:02:26.006 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:02:26.006 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:02:26.006 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:02:26.006 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:02:26.006 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:02:26.006 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:02:26.016 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:02:26.016 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 02:02:26.016 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:02:26.016 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 02:02:26.196 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28237 777
17-03-18 02:02:26.346 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:02:26.416 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:02:26.416 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:02:26.416 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:26.416 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 02:02:26.416 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:02:26.416 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:26.416 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:02:26.416 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:02:26.416 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:02:26.426 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 02:02:26.505 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:02:26.505 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:02:26.535 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:02:26.535 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:02:26.535 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:02:26.655 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:02:26.655 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:02:26.655 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:02:26.665 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:02:26.665 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:02:26.665 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:02:26.665 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:02:26.725 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 02:02:26.725 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:02:26.725 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28237 150' command took 2 ms to send, 1306 ms to get response, and 1314 ms overall
17-03-18 02:02:26.725 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:02:26.725 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.128462828794746. ------
17-03-18 02:02:26.735 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:02:26.735 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13501 mm
17-03-18 02:02:26.735 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:02:26.735 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:02:26.735 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 02:02:26.735 -07 000000591 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-18 02:02:26.735 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29492, sync = True, waitForSettling = False)
17-03-18 02:02:26.735 -07 000000462 INF: Z Motor: Moving to -0.135006 mm, started at -0.128463 mm, distance = -6.54 um
17-03-18 02:02:26.745 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:02:26.745 -07 000000462 INF: FPGA: Xmit ZDACW 29492\n [Z Motor]
17-03-18 02:02:26.745 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 02:02:26.755 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:02:26.755 -07 000000462 INF: FPGA: 'ZDACW 29492' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:02:26.755 -07 000000611 INF: FPGA: Recv YRDPOS 148173
17-03-18 02:02:26.765 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:02:26.765 -07 000000591 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:02:26.765 -07 000000591 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:02:26.765 -07 000000591 INF: Y Motor: Moving 1348 steps-27
17-03-18 02:02:26.765 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:02:26.775 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:02:26.775 -07 000000424 INF: FPGA: Recv ZDACR 29492
17-03-18 02:02:26.785 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:02:26.785 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:02:26.785 -07 000000462 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 02:02:26.965 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:02:26.965 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 196 ms to get response, and 225 ms overall
17-03-18 02:02:27.055 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 02:02:27.055 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:02:27.055 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:27.055 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:02:27.055 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:02:27.055 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:27.055 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:02:27.055 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:02:27.055 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 02:02:27.065 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 02:02:27.155 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:02:27.155 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 02:02:27.205 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:02:27.205 -07 000000579 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:02:27.215 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:02:27.215 -07 000000591 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:02:27.215 -07 000000591 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 02:02:27.215 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.843 mm, average velocity = 2.133 mm/sec
17-03-18 02:02:28.165 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:02:28.165 -07 000000611 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:02:28.175 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:02:28.175 -07 000000591 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:02:28.195 -07 000000591 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:02:28.195 -07 000000591 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:02:28.195 -07 000000591 INF: Y Motor: Moved to 73.1763 after 1461 ms (table move)
17-03-18 02:02:28.205 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135006 mm (DAC = 29492)
17-03-18 02:02:28.205 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:28.205 -07 000000611 INF: FPGA: Recv ZSGSRD 30307
17-03-18 02:02:28.215 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:02:28.215 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:28.215 -07 000000585 INF: FPGA: Recv ZSGSRD 30302
17-03-18 02:02:28.225 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:28.225 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:28.225 -07 000000579 INF: FPGA: Recv ZSGSRD 30310
17-03-18 02:02:28.235 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:28.235 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:28.235 -07 000000591 INF: FPGA: Recv ZSGSRD 30313
17-03-18 02:02:28.245 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:28.245 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:28.245 -07 000000444 INF: FPGA: Recv ZSGSRD 30308
17-03-18 02:02:28.255 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:28.255 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:28.255 -07 000000437 INF: FPGA: Recv ZSGSRD 30304
17-03-18 02:02:28.265 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:28.265 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:28.265 -07 000000579 INF: FPGA: Recv ZSGSRD 30314
17-03-18 02:02:28.275 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:28.275 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:28.275 -07 000000512 INF: FPGA: Recv ZSGSRD 30303
17-03-18 02:02:28.285 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:28.285 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:28.285 -07 000000611 INF: FPGA: Recv ZSGSRD 30299
17-03-18 02:02:28.295 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:28.295 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:28.295 -07 000000437 INF: FPGA: Recv ZSGSRD 30300
17-03-18 02:02:28.305 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:28.305 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:02:28.305 -07 000000424 INF: FPGA: Recv ZPIEZORD 26175
17-03-18 02:02:28.315 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:28.315 -07 000000561 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.500 V. Piezo Error = -9.1 V.
17-03-18 02:02:28.315 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30306 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30306 (-134.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30299 (-134.2 uncal um), Max = 30314 (-134.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:02:28.315 -07 000000561 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30306, posNoise = 8, negNoise = 7
17-03-18 02:02:28.315 -07 000000561 INF: Z Motor: After move to -0.135006, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:02:28.315 -07 000000561 INF: Z Motor: Settle wait time = 1465 ms, measure time = 108 ms (allowed 150 ms), total time = 1573 ms
17-03-18 02:02:28.315 -07 000000561 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:02:28.365 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 02:02:28.365 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:02:28.365 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:02:28.365 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:02:28.365 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:02:28.365 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:02:28.365 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:02:28.365 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:02:28.375 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:02:28.375 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:02:28.375 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:02:28.375 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:02:28.385 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:02:28.385 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 02:02:28.385 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:02:28.415 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 4.012614,
17-03-18 02:02:28.435 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:02:28.735 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:02:28.735 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:02:28.735 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:02:28.735 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1094749800, 0x0, 559484976) start.
17-03-18 02:02:28.775 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:02:28.775 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 02:02:28.775 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 02:02:28.845 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1094749800, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 02:02:28.855 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:28.855 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:02:28.855 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 02:02:28.875 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:02:28.875 -07 000000512 INF: Autofocus start
17-03-18 02:02:28.875 -07 000000512 INF: MeasureProfile start
17-03-18 02:02:28.875 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:02:28.885 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:02:28.885 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:02:28.895 -07 000000512 INF: MeasureProfile done
17-03-18 02:02:28.895 -07 000000512 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:02:28.895 -07 000000512 INF: Autofocus finished
17-03-18 02:02:29.085 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:02:29.085 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:02:29.085 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.135015525179343. ----------
17-03-18 02:02:29.095 -07 000000610 INF: Cycle	94	Tile	17	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:02:29.095 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27999, sync = True, waitForSettling = True)
17-03-18 02:02:29.095 -07 000000610 INF: Z Motor: Moving to -0.128171 mm, started at -0.135016 mm, distance = 6.84 um
17-03-18 02:02:29.095 -07 000000610 INF: FPGA: Xmit ZDACW 27999\n [Z Motor]
17-03-18 02:02:29.095 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:02:29.105 -07 000000610 INF: FPGA: 'ZDACW 27999' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:02:29.105 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:02:29.105 -07 000000608 INF: FPGA: Recv ZDACR 27999
17-03-18 02:02:29.115 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:29.115 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:02:29.265 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:29.265 -07 000000611 INF: FPGA: Recv ZSGSRD 29237
17-03-18 02:02:29.275 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:02:29.275 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:29.275 -07 000000437 INF: FPGA: Recv ZSGSRD 29251
17-03-18 02:02:29.285 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:29.285 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:29.285 -07 000000585 INF: FPGA: Recv ZSGSRD 29243
17-03-18 02:02:29.295 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:29.295 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:29.295 -07 000000447 INF: FPGA: Recv ZSGSRD 29239
17-03-18 02:02:29.305 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:29.305 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:29.305 -07 000000611 INF: FPGA: Recv ZSGSRD 29248
17-03-18 02:02:29.315 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:29.315 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:29.315 -07 000000462 INF: FPGA: Recv ZSGSRD 29244
17-03-18 02:02:29.325 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:29.325 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:29.325 -07 000000569 INF: FPGA: Recv ZSGSRD 29248
17-03-18 02:02:29.335 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:02:29.335 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:29.335 -07 000000561 INF: FPGA: Recv ZSGSRD 29238
17-03-18 02:02:29.345 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:29.345 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:29.345 -07 000000629 INF: FPGA: Recv ZSGSRD 29243
17-03-18 02:02:29.355 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:29.355 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:29.355 -07 000000585 INF: FPGA: Recv ZSGSRD 29244
17-03-18 02:02:29.365 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:29.365 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:02:29.365 -07 000000579 INF: FPGA: Recv ZPIEZORD 24789
17-03-18 02:02:29.375 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:29.375 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.272 V. Piezo Error = -9.8 V.
17-03-18 02:02:29.375 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29244 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29244 (-127.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29237 (-127.4 uncal um), Max = 29251 (-127.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:02:29.375 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29244, posNoise = 7, negNoise = 7
17-03-18 02:02:29.375 -07 000000610 INF: Z Motor: After move to -0.128171, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:02:29.375 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:02:29.375 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:02:29.375 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:02:29.375 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:02:29.375 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:02:29.375 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:02:29.375 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:02:29.375 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:02:29.375 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:02:29.375 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:02:29.375 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:02:29.375 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:02:29.375 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:02:29.385 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:02:29.385 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:02:29.385 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:02:29.385 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:02:29.385 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:02:29.385 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:02:29.395 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 02:02:29.395 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:02:29.395 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28176 150\n [Camera]
17-03-18 02:02:29.595 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:02:29.985 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:02:29.985 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:02:29.995 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:02:29.995 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:02:29.995 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 02:02:29.995 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:02:29.995 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:02:29.995 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:02:29.995 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:02:29.995 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:02:30.185 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28176 777
17-03-18 02:02:30.335 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:02:30.385 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 02:02:30.385 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:02:30.385 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:30.395 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 02:02:30.395 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:02:30.395 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:30.395 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:02:30.395 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:02:30.395 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:02:30.405 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:02:30.515 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:02:30.525 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:02:30.525 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:02:30.635 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:02:30.635 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:02:30.635 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:02:30.635 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:02:30.635 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:02:30.635 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:02:30.635 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:02:30.714 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 02:02:30.714 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:02:30.714 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28176 150' command took 2 ms to send, 1311 ms to get response, and 1314 ms overall
17-03-18 02:02:30.714 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:02:30.714 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128193011884792. ------
17-03-18 02:02:30.714 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:02:30.714 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13456 mm
17-03-18 02:02:30.714 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:02:30.714 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 29396, sync = True, waitForSettling = False)
17-03-18 02:02:30.714 -07 000000611 INF: Z Motor: Moving to -0.134566 mm, started at -0.128193 mm, distance = -6.37 um
17-03-18 02:02:30.714 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 02:02:30.724 -07 000000569 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 02:02:30.724 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:02:30.724 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:02:30.724 -07 000000611 INF: FPGA: Xmit ZDACW 29396\n [Z Motor]
17-03-18 02:02:30.724 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:02:30.734 -07 000000611 INF: FPGA: 'ZDACW 29396' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:02:30.734 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:02:30.734 -07 000000608 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:02:30.744 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:02:30.744 -07 000000569 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:02:30.744 -07 000000569 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:02:30.744 -07 000000569 INF: Y Motor: Moving 1354 steps-33
17-03-18 02:02:30.744 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:02:30.754 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:02:30.754 -07 000000462 INF: FPGA: Recv ZDACR 29396
17-03-18 02:02:30.764 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:02:30.764 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 02:02:30.764 -07 000000611 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 02:02:30.944 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:02:30.944 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 224 ms overall
17-03-18 02:02:31.024 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 02:02:31.024 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 02:02:31.024 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:31.024 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:02:31.034 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 02:02:31.034 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:02:31.034 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:31.034 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:02:31.034 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:02:31.034 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-18 02:02:31.144 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 02:02:31.144 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 397 ms overall
17-03-18 02:02:31.174 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:02:31.184 -07 000000437 INF: FPGA: Recv YRDPOS 151569
17-03-18 02:02:31.184 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:02:31.184 -07 000000569 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:02:31.184 -07 000000569 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:02:31.184 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.846 mm, average velocity = 2.116 mm/sec
17-03-18 02:02:31.504 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:02:31.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:02:32.134 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:02:32.134 -07 000000591 INF: FPGA: Recv YRDPOS 151569
17-03-18 02:02:32.144 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:02:32.144 -07 000000569 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:02:32.164 -07 000000569 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:02:32.164 -07 000000569 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:02:32.164 -07 000000569 INF: Y Motor: Moved to 74.0083 after 1440 ms (table move)
17-03-18 02:02:32.164 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134566 mm (DAC = 29396)
17-03-18 02:02:32.164 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:32.164 -07 000000579 INF: FPGA: Recv ZSGSRD 30239
17-03-18 02:02:32.174 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:02:32.174 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:32.174 -07 000000608 INF: FPGA: Recv ZSGSRD 30238
17-03-18 02:02:32.184 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:32.184 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:32.184 -07 000000569 INF: FPGA: Recv ZSGSRD 30237
17-03-18 02:02:32.194 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:32.194 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:32.194 -07 000000437 INF: FPGA: Recv ZSGSRD 30236
17-03-18 02:02:32.204 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:32.204 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:32.204 -07 000000579 INF: FPGA: Recv ZSGSRD 30228
17-03-18 02:02:32.214 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:32.214 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:32.214 -07 000000629 INF: FPGA: Recv ZSGSRD 30241
17-03-18 02:02:32.224 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:32.224 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:32.224 -07 000000512 INF: FPGA: Recv ZSGSRD 30238
17-03-18 02:02:32.234 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:32.234 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:32.234 -07 000000437 INF: FPGA: Recv ZSGSRD 30238
17-03-18 02:02:32.244 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:32.244 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:32.244 -07 000000629 INF: FPGA: Recv ZSGSRD 30238
17-03-18 02:02:32.254 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:32.254 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:32.254 -07 000000608 INF: FPGA: Recv ZSGSRD 30235
17-03-18 02:02:32.264 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:32.264 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:02:32.264 -07 000000512 INF: FPGA: Recv ZPIEZORD 26113
17-03-18 02:02:32.274 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:32.274 -07 000000585 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.486 V. Piezo Error = -9.1 V.
17-03-18 02:02:32.274 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.6 um, Read 10 ADC samples: Avg = 30237 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30238 (-133.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30228 (-133.7 uncal um), Max = 30241 (-133.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:02:32.274 -07 000000585 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30237, posNoise = 4, negNoise = 9
17-03-18 02:02:32.274 -07 000000585 INF: Z Motor: After move to -0.134566, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:02:32.274 -07 000000585 INF: Z Motor: Settle wait time = 1445 ms, measure time = 106 ms (allowed 150 ms), total time = 1551 ms
17-03-18 02:02:32.274 -07 000000585 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:02:32.324 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-18 02:02:32.324 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:02:32.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:02:32.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:02:32.324 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:02:32.324 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:02:32.324 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:02:32.324 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:02:32.324 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:02:32.324 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:02:32.334 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:02:32.334 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:02:32.344 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:02:32.344 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:02:32.344 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:02:32.394 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:02:32.694 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:02:32.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:02:32.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:02:32.694 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1094749800, 0x0, 559484976) start.
17-03-18 02:02:32.734 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:02:32.734 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 02:02:32.734 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 02:02:32.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1094749800, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 02:02:32.814 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:32.814 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:02:32.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-18 02:02:32.834 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:02:32.834 -07 000000447 INF: Autofocus start
17-03-18 02:02:32.834 -07 000000447 INF: MeasureProfile start
17-03-18 02:02:32.834 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:02:32.844 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:02:32.844 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:02:32.844 -07 000000447 INF: MeasureProfile done
17-03-18 02:02:32.844 -07 000000447 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:02:32.854 -07 000000447 INF: Autofocus finished
17-03-18 02:02:33.044 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:02:33.044 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:02:33.044 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.134572254541561. ----------
17-03-18 02:02:33.044 -07 000000610 INF: Cycle	94	Tile	18	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:02:33.054 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27903, sync = True, waitForSettling = True)
17-03-18 02:02:33.054 -07 000000610 INF: Z Motor: Moving to -0.127732 mm, started at -0.134572 mm, distance = 6.84 um
17-03-18 02:02:33.054 -07 000000610 INF: FPGA: Xmit ZDACW 27903\n [Z Motor]
17-03-18 02:02:33.054 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 02:02:33.064 -07 000000610 INF: FPGA: 'ZDACW 27903' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:02:33.064 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:02:33.064 -07 000000591 INF: FPGA: Recv ZDACR 27903
17-03-18 02:02:33.074 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:33.074 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:02:33.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:33.224 -07 000000447 INF: FPGA: Recv ZSGSRD 29177
17-03-18 02:02:33.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:33.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:33.234 -07 000000502 INF: FPGA: Recv ZSGSRD 29171
17-03-18 02:02:33.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:33.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:33.244 -07 000000591 INF: FPGA: Recv ZSGSRD 29169
17-03-18 02:02:33.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:33.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:33.254 -07 000000561 INF: FPGA: Recv ZSGSRD 29175
17-03-18 02:02:33.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:33.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:33.264 -07 000000424 INF: FPGA: Recv ZSGSRD 29176
17-03-18 02:02:33.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:33.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:33.274 -07 000000569 INF: FPGA: Recv ZSGSRD 29180
17-03-18 02:02:33.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:33.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:33.284 -07 000000585 INF: FPGA: Recv ZSGSRD 29172
17-03-18 02:02:33.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:33.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:33.294 -07 000000561 INF: FPGA: Recv ZSGSRD 29172
17-03-18 02:02:33.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:33.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:33.304 -07 000000512 INF: FPGA: Recv ZSGSRD 29171
17-03-18 02:02:33.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:33.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:33.314 -07 000000569 INF: FPGA: Recv ZSGSRD 29174
17-03-18 02:02:33.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:33.324 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:02:33.324 -07 000000585 INF: FPGA: Recv ZPIEZORD 24735
17-03-18 02:02:33.334 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:33.334 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.258 V. Piezo Error = -9.7 V.
17-03-18 02:02:33.334 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29174 (-127.0 uncal um), Error = 0.8 uncal um, Median = 29173 (-127.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29169 (-126.9 uncal um), Max = 29180 (-127.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:02:33.334 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29174, posNoise = 6, negNoise = 5
17-03-18 02:02:33.334 -07 000000610 INF: Z Motor: After move to -0.127732, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:02:33.334 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:02:33.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:02:33.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:02:33.334 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:02:33.334 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:02:33.334 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:02:33.334 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:02:33.334 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:02:33.334 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:02:33.334 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:02:33.334 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:02:33.334 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:02:33.334 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:02:33.344 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:02:33.344 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:02:33.344 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:02:33.344 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:02:33.354 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:02:33.354 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:02:33.354 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:02:33.354 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:02:33.354 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 28080 150\n [Camera]
17-03-18 02:02:33.554 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:02:33.774 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 3.996267,
17-03-18 02:02:33.944 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:02:33.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:02:33.944 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:02:33.944 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:02:33.944 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 02:02:33.954 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:02:33.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:02:33.954 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:02:33.954 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:02:33.954 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:02:34.134 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28080 777
17-03-18 02:02:34.284 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:02:34.344 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 02:02:34.344 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:02:34.344 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:34.344 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 02:02:34.344 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:02:34.344 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:34.344 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:02:34.354 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:02:34.354 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:02:34.354 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:02:34.474 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:02:34.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:02:34.474 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:02:34.594 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:02:34.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:02:34.594 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:02:34.594 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:02:34.594 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:02:34.604 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:02:34.604 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:02:34.664 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 02:02:34.664 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:02:34.664 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 28080 150' command took 2 ms to send, 1309 ms to get response, and 1314 ms overall
17-03-18 02:02:34.674 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:02:34.674 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.127743317034869. ------
17-03-18 02:02:34.674 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:02:34.674 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13357 mm
17-03-18 02:02:34.674 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:02:34.674 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 02:02:34.674 -07 000000611 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 02:02:34.674 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:02:34.674 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 29178, sync = True, waitForSettling = False)
17-03-18 02:02:34.674 -07 000000579 INF: Z Motor: Moving to -0.133568 mm, started at -0.127743 mm, distance = -5.83 um
17-03-18 02:02:34.684 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:02:34.684 -07 000000579 INF: FPGA: Xmit ZDACW 29178\n [Z Motor]
17-03-18 02:02:34.684 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:02:34.694 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:02:34.694 -07 000000579 INF: FPGA: 'ZDACW 29178' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:02:34.694 -07 000000502 INF: FPGA: Recv YRDPOS 151570
17-03-18 02:02:34.704 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:02:34.704 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:02:34.704 -07 000000611 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:02:34.704 -07 000000611 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:02:34.704 -07 000000611 INF: Y Motor: Moving 1350 steps-29
17-03-18 02:02:34.714 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:02:34.714 -07 000000424 INF: FPGA: Recv ZDACR 29178
17-03-18 02:02:34.724 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:02:34.724 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:02:34.724 -07 000000579 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 02:02:34.903 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:02:34.903 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:02:34.993 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 02:02:34.993 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:02:34.993 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:34.993 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 02:02:34.993 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:02:34.993 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:35.003 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:02:35.003 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-18 02:02:35.003 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:02:35.003 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 02:02:35.093 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 02:02:35.093 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-18 02:02:35.123 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:02:35.123 -07 000000437 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:02:35.133 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:02:35.133 -07 000000611 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:02:35.133 -07 000000611 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-18 02:02:35.133 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.159 mm/sec
17-03-18 02:02:36.083 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:02:36.083 -07 000000561 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:02:36.093 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:36.093 -07 000000611 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:02:36.103 -07 000000611 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:02:36.103 -07 000000611 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:02:36.103 -07 000000611 INF: Y Motor: Moved to 74.8320 after 1430 ms (table move)
17-03-18 02:02:36.113 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133568 mm (DAC = 29178)
17-03-18 02:02:36.113 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:36.113 -07 000000437 INF: FPGA: Recv ZSGSRD 30085
17-03-18 02:02:36.123 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:02:36.123 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:36.123 -07 000000561 INF: FPGA: Recv ZSGSRD 30078
17-03-18 02:02:36.133 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:36.133 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:36.133 -07 000000579 INF: FPGA: Recv ZSGSRD 30080
17-03-18 02:02:36.143 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:36.143 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:36.143 -07 000000611 INF: FPGA: Recv ZSGSRD 30081
17-03-18 02:02:36.153 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:36.153 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:36.153 -07 000000608 INF: FPGA: Recv ZSGSRD 30084
17-03-18 02:02:36.163 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:36.163 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:36.163 -07 000000561 INF: FPGA: Recv ZSGSRD 30082
17-03-18 02:02:36.173 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:36.173 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:36.173 -07 000000591 INF: FPGA: Recv ZSGSRD 30086
17-03-18 02:02:36.183 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:36.183 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:36.183 -07 000000424 INF: FPGA: Recv ZSGSRD 30084
17-03-18 02:02:36.193 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:36.193 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:36.193 -07 000000608 INF: FPGA: Recv ZSGSRD 30085
17-03-18 02:02:36.203 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:36.203 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:36.203 -07 000000502 INF: FPGA: Recv ZSGSRD 30081
17-03-18 02:02:36.213 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:36.213 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:02:36.213 -07 000000561 INF: FPGA: Recv ZPIEZORD 25905
17-03-18 02:02:36.223 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:36.223 -07 000000447 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.452 V. Piezo Error = -9.2 V.
17-03-18 02:02:36.223 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.6 um, Read 10 ADC samples: Avg = 30083 (-132.8 uncal um), Error = 0.8 uncal um, Median = 30083 (-132.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30078 (-132.8 uncal um), Max = 30086 (-132.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:02:36.223 -07 000000447 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30083, posNoise = 3, negNoise = 5
17-03-18 02:02:36.223 -07 000000447 INF: Z Motor: After move to -0.133568, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:02:36.223 -07 000000447 INF: Z Motor: Settle wait time = 1433 ms, measure time = 108 ms (allowed 150 ms), total time = 1541 ms
17-03-18 02:02:36.223 -07 000000447 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:02:36.273 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-18 02:02:36.273 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:02:36.273 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:02:36.273 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:02:36.273 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:02:36.273 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:02:36.273 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:02:36.273 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:02:36.273 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:02:36.273 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:02:36.283 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:02:36.283 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:02:36.293 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:02:36.293 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 02:02:36.293 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:02:36.343 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:02:36.503 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:02:36.503 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 93. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:02:36.643 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:02:36.643 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:02:36.643 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:02:36.643 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1094749800, 0x0, 559484976) start.
17-03-18 02:02:36.683 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:02:36.683 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 02:02:36.683 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 02:02:36.763 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1094749800, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 02:02:36.763 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:36.763 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:02:36.763 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 02:02:36.783 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:02:36.783 -07 000000608 INF: Autofocus start
17-03-18 02:02:36.783 -07 000000608 INF: MeasureProfile start
17-03-18 02:02:36.783 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:02:36.793 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:02:36.793 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:02:36.793 -07 000000608 INF: MeasureProfile done
17-03-18 02:02:36.793 -07 000000608 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:02:36.793 -07 000000608 INF: Autofocus finished
17-03-18 02:02:36.993 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:02:36.993 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:02:36.993 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.13358292587173. ----------
17-03-18 02:02:36.993 -07 000000610 INF: Cycle	94	Tile	19	Exposure Settings		A	392	G	188	T	188	C	392
17-03-18 02:02:37.003 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27702, sync = True, waitForSettling = True)
17-03-18 02:02:37.003 -07 000000610 INF: Z Motor: Moving to -0.126812 mm, started at -0.133583 mm, distance = 6.77 um
17-03-18 02:02:37.003 -07 000000610 INF: FPGA: Xmit ZDACW 27702\n [Z Motor]
17-03-18 02:02:37.003 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:02:37.013 -07 000000610 INF: FPGA: 'ZDACW 27702' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:37.013 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:02:37.013 -07 000000437 INF: FPGA: Recv ZDACR 27702
17-03-18 02:02:37.023 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:37.023 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:02:37.173 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:37.173 -07 000000502 INF: FPGA: Recv ZSGSRD 29030
17-03-18 02:02:37.183 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:02:37.183 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:37.183 -07 000000424 INF: FPGA: Recv ZSGSRD 29032
17-03-18 02:02:37.193 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:37.193 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:37.193 -07 000000629 INF: FPGA: Recv ZSGSRD 29029
17-03-18 02:02:37.203 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:37.203 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:37.203 -07 000000561 INF: FPGA: Recv ZSGSRD 29032
17-03-18 02:02:37.213 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:37.213 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:37.213 -07 000000579 INF: FPGA: Recv ZSGSRD 29028
17-03-18 02:02:37.223 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:37.223 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:37.223 -07 000000437 INF: FPGA: Recv ZSGSRD 29031
17-03-18 02:02:37.233 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:37.233 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:37.233 -07 000000611 INF: FPGA: Recv ZSGSRD 29031
17-03-18 02:02:37.243 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:37.243 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:37.243 -07 000000608 INF: FPGA: Recv ZSGSRD 29029
17-03-18 02:02:37.253 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:37.253 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:37.253 -07 000000447 INF: FPGA: Recv ZSGSRD 29030
17-03-18 02:02:37.263 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:37.263 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:02:37.263 -07 000000424 INF: FPGA: Recv ZSGSRD 29031
17-03-18 02:02:37.273 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:37.273 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:02:37.273 -07 000000591 INF: FPGA: Recv ZPIEZORD 24573
17-03-18 02:02:37.283 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:37.283 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.227 V. Piezo Error = -9.8 V.
17-03-18 02:02:37.283 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.8 um, Read 10 ADC samples: Avg = 29030 (-126.0 uncal um), Error = 0.8 uncal um, Median = 29030 (-126.0 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 29028 (-126.0 uncal um), Max = 29032 (-126.1 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 02:02:37.283 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29030, posNoise = 2, negNoise = 2
17-03-18 02:02:37.283 -07 000000610 INF: Z Motor: After move to -0.126812, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:02:37.283 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:02:37.283 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:02:37.283 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:02:37.283 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:02:37.283 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:02:37.283 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:02:37.283 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:02:37.283 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:02:37.283 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:02:37.283 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:02:37.283 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:02:37.283 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:02:37.283 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:02:37.283 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:02:37.283 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:02:37.293 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:02:37.293 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:02:37.293 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:02:37.293 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:02:37.303 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:02:37.303 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:02:37.303 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 392 392 188 188 27879 150\n [Camera]
17-03-18 02:02:37.503 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:02:37.893 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-18 02:02:37.893 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-18 02:02:37.893 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:02:37.893 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:02:37.893 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 02:02:37.893 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-18 02:02:37.893 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-18 02:02:37.893 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:02:37.893 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:02:37.893 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:02:38.083 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27879 777
17-03-18 02:02:38.233 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-18 02:02:38.293 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 02:02:38.293 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:02:38.293 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:38.293 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:02:38.293 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:02:38.293 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:02:38.293 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:02:38.293 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:38.303 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:02:38.303 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:02:38.423 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-18 02:02:38.423 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-18 02:02:38.423 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:02:38.533 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-18 02:02:38.533 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-18 02:02:38.533 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:02:38.543 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:02:38.543 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:02:38.543 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:02:38.543 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:02:38.613 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-18 02:02:38.613 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:02:38.613 -07 000000610 INF: FPGA: 'CAMDBLSNAP 392 392 188 188 27879 150' command took 2 ms to send, 1307 ms to get response, and 1314 ms overall
17-03-18 02:02:38.933 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 02:02:38.933 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:02:38.933 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:38.933 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:02:38.933 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:02:38.933 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:02:38.943 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:02:38.943 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:02:38.943 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-18 02:02:38.943 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 02:02:38.943 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 02:02:38.982 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 02:02:38.982 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 02:02:39.022 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 02:02:39.042 -07 000000610 INF: Enabling Skipping AutoFocus in the next 3 cycles.
17-03-18 02:02:39.042 -07 000000610 INF: Imaging Cycle 94: ScanTilesCommand Cycle 94 time end. Duration was 171061 ms.
17-03-18 02:02:39.042 -07 000000610 INF: =================== Cycle #94 ===================
17-03-18 02:02:39.042 -07 000000610 INF: ===================  ===================
17-03-18 02:02:39.042 -07 000000569 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 02:02:39.042 -07 000000561 INF: FPGA: Recv EXLED1ADCR 25
17-03-18 02:02:39.052 -07 000000569 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:02:39.052 -07 000000569 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW
17-03-18 02:02:39.052 -07 000000569 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 94, FrontChillerTemperature: 4.008536, FrontChillerHeatSinkTemperature: 0.344628, AmbientTemperature: 18.79133, FlowCellCompartmentTemperature: 21.99399, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.52238, GreenLEDSensorTemperature: 26.84146, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864
17-03-18 02:02:39.122 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.
17-03-18 02:02:39.162 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 4.008536,