17-03-18 02:02:39.172 -07 000000610 INF: =================== Cycle #95 ===================
17-03-18 02:02:39.172 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 02:02:39.172 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-18 02:02:39.192 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:02:39.192 -07 000000561 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:02:39.202 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:02:39.202 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:02:39.202 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 02:02:39.202 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 02:02:39.202 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 02:02:39.312 -07 000000579 INF: FPGA: Recv YMVTO 154377 872
17-03-18 02:02:39.312 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 106 ms to get response, and 116 ms overall
17-03-18 02:02:39.312 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-18 02:02:39.312 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 872 steps (0.545 mm). Slippage = -0.003 mm (-0.01%).
17-03-18 02:02:39.312 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.549 mm, average velocity = 4.729 mm/sec
17-03-18 02:02:41.502 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:02:41.502 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1441, R2=1497, Total=2938. Warn if over 250 bubbles per interval.
17-03-18 02:02:42.312 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:02:42.312 -07 000000611 INF: FPGA: Recv YRDPOS 154380
17-03-18 02:02:42.322 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:02:42.322 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:02:42.352 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:02:42.352 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 3 counts (0.001 mm)
17-03-18 02:02:42.352 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3172 ms
17-03-18 02:02:42.352 -07 000000610 INF: =================== Cycle #95, Flow Cell Temp 60° ===================
17-03-18 02:02:42.352 -07 000000610 INF: =================== Cycle #95, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 02:02:42.352 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 02:02:42.362 -07 000000608 INF: FPGA: Recv TEC2TEMP 
17-03-18 02:02:42.362 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:02:42.362 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:02:42.362 -07 000000502 INF: FPGA: Recv TEC2EN 
17-03-18 02:02:42.372 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:02:42.372 -07 000000610 INF: =================== Cycle #95, Flow Cell Temp 60° ===================
17-03-18 02:02:42.372 -07 000000610 INF: =================== Cycle #95 ===================
17-03-18 02:02:42.372 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:02:42.372 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:02:42.402 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 02:02:42.402 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 02:02:42.402 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:02:42.702 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:02:42.722 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 02:02:42.722 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 02:02:42.772 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:02:42.792 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:02:42.792 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:02:42.892 -07 000000610 INF: =================== Cycle #95, Pumping Reagent PR2 (3) ===================
17-03-18 02:02:42.892 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 02:02:42.892 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:02:42.922 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:02:42.922 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:02:42.922 -07 000000610 INF: =================== Cycle #95, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:02:43.052 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 02:02:43.092 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:02:44.541 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 3.994908,
17-03-18 02:02:46.221 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:02:46.251 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:02:46.501 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 3
17-03-18 02:02:46.501 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=3, R2=4, Total=7. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1444, R2=1501, Total=2945. Warn if over 250 bubbles per interval.
17-03-18 02:02:46.671 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:02:46.701 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:02:47.121 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:02:47.151 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:02:47.151 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 02:02:47.151 -07 000000610 INF: =================== Cycle #95, Pumping Reagent PR2 (3) ===================
17-03-18 02:02:47.281 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:02:47.310 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:02:47.310 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:02:47.440 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:02:47.470 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:02:47.470 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:02:47.470 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:02:47.600 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:02:47.630 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:02:48.060 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:02:48.090 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:02:48.090 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:02:48.090 -07 000000610 INF: =================== Cycle #95 ===================
17-03-18 02:02:49.310 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 02:02:49.310 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 02:02:49.310 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:02:49.330 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:02:49.330 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 02:02:49.330 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 02:02:49.470 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:02:49.490 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 02:02:49.490 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 02:02:49.540 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:02:49.560 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 02:02:49.560 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:02:49.660 -07 000000610 INF: =================== Cycle #95, Pumping Reagent CMS (4) ===================
17-03-18 02:02:49.660 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:02:49.660 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:02:49.690 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:02:49.690 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:02:49.690 -07 000000610 INF: =================== Cycle #95, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 02:02:49.820 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:02:49.860 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:02:49.900 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 4.030322,
17-03-18 02:02:51.300 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:02:51.330 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:02:51.499 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:02:51.499 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1444, R2=1501, Total=2945. Warn if over 250 bubbles per interval.
17-03-18 02:02:51.749 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:02:51.779 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:02:51.779 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 02:02:51.779 -07 000000610 INF: =================== Cycle #95, Pumping Reagent CMS (4) ===================
17-03-18 02:02:51.909 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:02:51.949 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:02:51.949 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:02:52.079 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:02:52.109 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:02:52.109 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:02:52.109 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:02:52.239 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:02:52.269 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:02:52.699 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:02:52.729 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:02:52.729 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:02:52.729 -07 000000610 INF: =================== Cycle #95 ===================
17-03-18 02:02:53.949 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 02:02:53.949 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:02:53.949 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:02:53.969 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 02:02:53.969 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 02:02:53.969 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 02:02:54.119 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:02:54.139 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 02:02:54.139 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 02:02:54.189 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:02:54.209 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:02:54.209 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:02:54.309 -07 000000610 INF: =================== Cycle #95, Pumping Reagent PR2 (3) ===================
17-03-18 02:02:54.309 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:02:54.309 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:02:54.339 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:02:54.339 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:02:54.339 -07 000000610 INF: =================== Cycle #95, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:02:54.469 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:02:54.509 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:02:55.269 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 4.018051,
17-03-18 02:02:55.379 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:02:55.409 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:02:55.409 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 02:02:55.409 -07 000000610 INF: =================== Cycle #95, Pumping Reagent PR2 (3) ===================
17-03-18 02:02:55.539 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:02:55.569 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:02:55.569 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:02:55.698 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:02:55.728 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:02:55.728 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:02:55.728 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:02:55.858 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:02:55.888 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:02:56.318 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:02:56.348 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:02:56.348 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:02:56.348 -07 000000610 INF: =================== Cycle #95 ===================
17-03-18 02:02:56.348 -07 000000608 INF: WaitCommand(10000) start
17-03-18 02:02:56.348 -07 000000444 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:02:56.348 -07 000000444 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:02:56.498 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:02:56.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1444, R2=1501, Total=2945. Warn if over 250 bubbles per interval.
17-03-18 02:02:57.568 -07 000000444 INF: AsyncDelayTimer waited 1215ms
17-03-18 02:02:57.568 -07 000000444 INF: LanePump: Xmit /1?\r
17-03-18 02:02:57.598 -07 000000444 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:02:57.598 -07 000000444 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:02:57.728 -07 000000444 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:02:57.768 -07 000000444 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:02:59.298 -07 000000444 INF: LanePump: Xmit /1Q\r
17-03-18 02:02:59.328 -07 000000444 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:02:59.748 -07 000000444 INF: LanePump: Xmit /1Q\r
17-03-18 02:02:59.778 -07 000000444 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:02:59.778 -07 000000444 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 02:02:59.778 -07 000000444 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:02:59.778 -07 000000444 INF: ===================  ===================
17-03-18 02:03:00.637 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 3.996267,
17-03-18 02:03:01.497 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:03:01.497 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1444, R2=1501, Total=2945. Warn if over 250 bubbles per interval.
17-03-18 02:03:06.006 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 3.977204,
17-03-18 02:03:06.356 -07 000000608 INF: WaitCommand(10000) end
17-03-18 02:03:06.356 -07 000000610 INF: =================== Cycle #95, Pumping Reagent PR2 (3) ===================
17-03-18 02:03:06.356 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 02:03:06.356 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:03:06.386 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:03:06.386 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:03:06.386 -07 000000610 INF: =================== Cycle #95, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:03:06.496 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:03:06.496 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1444, R2=1501, Total=2945. Warn if over 250 bubbles per interval.
17-03-18 02:03:06.516 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 02:03:06.556 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:03:11.385 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 3.970374,
17-03-18 02:03:11.495 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:03:11.495 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1444, R2=1501, Total=2945. Warn if over 250 bubbles per interval.
17-03-18 02:03:12.684 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:03:12.714 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:03:13.134 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:03:13.164 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:03:13.584 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:03:13.614 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:03:14.034 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:03:14.064 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:03:14.484 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:03:14.514 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:03:14.514 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 02:03:14.514 -07 000000610 INF: =================== Cycle #95, Pumping Reagent PR2 (3) ===================
17-03-18 02:03:14.644 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:03:14.674 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:03:14.674 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:03:14.804 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:03:14.834 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:03:14.834 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:03:14.834 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:03:14.964 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:03:14.994 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:03:15.424 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:03:15.454 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:03:15.454 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:03:15.454 -07 000000610 INF: =================== Cycle #95 ===================
17-03-18 02:03:16.493 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 3
17-03-18 02:03:16.493 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=3, R2=2, Total=5. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1447, R2=1503, Total=2950. Warn if over 250 bubbles per interval.
17-03-18 02:03:16.673 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 02:03:16.673 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 02:03:16.673 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:03:16.693 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:03:16.693 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 02:03:16.693 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 02:03:16.743 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 3.975845,
17-03-18 02:03:16.903 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:03:16.923 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 02:03:16.923 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 02:03:16.973 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:03:16.993 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 02:03:16.993 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:03:17.093 -07 000000610 INF: =================== Cycle #95, Pumping Reagent IMT (1) ===================
17-03-18 02:03:17.093 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:03:17.093 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:03:17.123 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:03:17.123 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:03:17.123 -07 000000610 INF: =================== Cycle #95, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 02:03:17.253 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:03:17.293 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:03:18.733 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:03:18.763 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:03:19.183 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:03:19.213 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:03:19.213 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 02:03:19.213 -07 000000610 INF: =================== Cycle #95, Pumping Reagent IMT (1) ===================
17-03-18 02:03:19.343 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:03:19.373 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:03:19.373 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:03:19.503 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:03:19.533 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:03:19.533 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:03:19.533 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:03:19.663 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:03:19.693 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:03:20.123 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:03:20.153 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:03:20.153 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:03:20.153 -07 000000610 INF: =================== Cycle #95 ===================
17-03-18 02:03:21.372 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 02:03:21.372 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:03:21.372 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:03:21.392 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 02:03:21.392 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 02:03:21.392 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:03:21.492 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:03:21.492 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1447, R2=1503, Total=2950. Warn if over 250 bubbles per interval.
17-03-18 02:03:21.622 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:03:21.642 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 02:03:21.642 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 02:03:21.692 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:03:21.712 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:03:21.712 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:03:21.812 -07 000000610 INF: =================== Cycle #95, Pumping Reagent PR2 (3) ===================
17-03-18 02:03:21.812 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:03:21.812 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:03:21.842 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:03:21.842 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:03:21.842 -07 000000610 INF: =================== Cycle #95, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:03:21.972 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:03:22.012 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:03:22.112 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 4.003063,
17-03-18 02:03:22.882 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:03:22.912 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:03:22.912 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-18 02:03:22.912 -07 000000610 INF: =================== Cycle #95, Pumping Reagent PR2 (3) ===================
17-03-18 02:03:23.042 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:03:23.072 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:03:23.072 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:03:23.202 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:03:23.232 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:03:23.232 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:03:23.232 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:03:23.362 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:03:23.392 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:03:23.822 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:03:23.852 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:03:23.852 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:03:23.852 -07 000000610 INF: =================== Cycle #95 ===================
17-03-18 02:03:23.852 -07 000000610 INF: =================== Cycle #95, Flow Cell Temp 65° ===================
17-03-18 02:03:23.852 -07 000000610 INF: =================== Cycle #95, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 02:03:23.852 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 02:03:23.852 -07 000000502 INF: FPGA: Recv TEC2TEMP 
17-03-18 02:03:23.862 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:03:23.862 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:03:23.862 -07 000000561 INF: FPGA: Recv TEC2EN 
17-03-18 02:03:23.872 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:03:23.872 -07 000000610 INF: =================== Cycle #95, Flow Cell Temp 65° ===================
17-03-18 02:03:23.872 -07 000000610 INF: =================== Cycle #95 ===================
17-03-18 02:03:23.872 -07 000000610 INF: WaitCommand(30000) start
17-03-18 02:03:26.491 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:03:26.491 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1447, R2=1503, Total=2950. Warn if over 250 bubbles per interval.
17-03-18 02:03:27.491 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 4.014009,
17-03-18 02:03:31.490 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:03:31.490 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1447, R2=1503, Total=2950. Warn if over 250 bubbles per interval.
17-03-18 02:03:32.850 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 4.026244,
17-03-18 02:03:36.489 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:03:36.489 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1447, R2=1503, Total=2950. Warn if over 250 bubbles per interval.
17-03-18 02:03:38.218 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 4.015368,
17-03-18 02:03:41.487 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:03:41.487 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1447, R2=1503, Total=2950. Warn if over 250 bubbles per interval.
17-03-18 02:03:43.597 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 4.030322,
17-03-18 02:03:46.486 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:03:46.486 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1447, R2=1503, Total=2950. Warn if over 250 bubbles per interval.
17-03-18 02:03:48.956 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 4.009895,
17-03-18 02:03:51.486 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:03:51.486 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1447, R2=1503, Total=2950. Warn if over 250 bubbles per interval.
17-03-18 02:03:53.875 -07 000000610 INF: WaitCommand(30000) end
17-03-18 02:03:53.875 -07 000000610 INF: =================== Cycle #95, Pumping Reagent PR2 (3) ===================
17-03-18 02:03:53.875 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 02:03:53.985 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:03:54.015 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:03:54.015 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:03:54.015 -07 000000610 INF: =================== Cycle #95, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:03:54.145 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 02:03:54.185 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:03:54.335 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 4.02213,
17-03-18 02:03:54.725 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:03:54.755 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:03:54.755 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 02:03:54.755 -07 000000610 INF: =================== Cycle #95, Pumping Reagent PR2 (3) ===================
17-03-18 02:03:54.885 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:03:54.915 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:03:54.915 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:03:55.045 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:03:55.075 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:03:55.075 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:03:55.075 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:03:55.205 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:03:55.235 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:03:55.665 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:03:55.695 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:03:55.695 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:03:55.695 -07 000000610 INF: =================== Cycle #95 ===================
17-03-18 02:03:55.695 -07 000000579 INF: WaitCommand(30000) start
17-03-18 02:03:55.695 -07 000000437 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:03:55.695 -07 000000437 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:03:56.485 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:03:56.485 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1447, R2=1503, Total=2950. Warn if over 250 bubbles per interval.
17-03-18 02:03:56.915 -07 000000437 INF: AsyncDelayTimer waited 1214ms
17-03-18 02:03:56.915 -07 000000437 INF: LanePump: Xmit /1?\r
17-03-18 02:03:56.945 -07 000000437 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:03:56.945 -07 000000437 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:03:57.075 -07 000000437 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:03:57.115 -07 000000437 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:03:59.455 -07 000000437 INF: LanePump: Xmit /1Q\r
17-03-18 02:03:59.485 -07 000000437 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:03:59.695 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 3.996267,
17-03-18 02:03:59.905 -07 000000437 INF: LanePump: Xmit /1Q\r
17-03-18 02:03:59.935 -07 000000437 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:03:59.935 -07 000000437 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 02:03:59.935 -07 000000437 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:03:59.935 -07 000000437 INF: ===================  ===================
17-03-18 02:04:01.485 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:04:01.485 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1447, R2=1503, Total=2950. Warn if over 250 bubbles per interval.
17-03-18 02:04:05.064 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 3.988112,
17-03-18 02:04:06.484 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:04:06.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1447, R2=1503, Total=2950. Warn if over 250 bubbles per interval.
17-03-18 02:04:10.434 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 3.996267,
17-03-18 02:04:11.484 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:04:11.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1447, R2=1503, Total=2950. Warn if over 250 bubbles per interval.
17-03-18 02:04:15.803 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 3.985358,
17-03-18 02:04:16.483 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:04:16.483 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1447, R2=1503, Total=2950. Warn if over 250 bubbles per interval.
17-03-18 02:04:21.173 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 3.999021,
17-03-18 02:04:21.483 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:04:21.483 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1447, R2=1503, Total=2950. Warn if over 250 bubbles per interval.
17-03-18 02:04:25.702 -07 000000579 INF: WaitCommand(30000) end
17-03-18 02:04:25.702 -07 000000610 INF: =================== Cycle #95, Flow Cell Temp 22° ===================
17-03-18 02:04:25.702 -07 000000610 INF: =================== Cycle #95, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 02:04:25.702 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 02:04:25.712 -07 000000608 INF: FPGA: Recv TEC2TEMP 
17-03-18 02:04:25.712 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:04:25.712 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:04:25.712 -07 000000437 INF: FPGA: Recv TEC2EN 
17-03-18 02:04:25.722 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:04:25.722 -07 000000610 INF: =================== Cycle #95, Flow Cell Temp 22° ===================
17-03-18 02:04:25.722 -07 000000610 INF: =================== Cycle #95 ===================
17-03-18 02:04:25.722 -07 000000610 INF: =================== Cycle #95, Pumping Reagent PR2 (3) ===================
17-03-18 02:04:25.722 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 02:04:25.722 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:04:25.752 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:04:25.752 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:04:25.752 -07 000000610 INF: =================== Cycle #95, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:04:25.882 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 02:04:25.922 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:04:26.482 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:04:26.482 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1447, R2=1503, Total=2950. Warn if over 250 bubbles per interval.
17-03-18 02:04:26.542 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 4.024884,
17-03-18 02:04:29.052 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:04:29.082 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:04:29.502 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:04:29.532 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:04:29.952 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:04:29.982 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:04:29.982 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 02:04:29.982 -07 000000610 INF: =================== Cycle #95, Pumping Reagent PR2 (3) ===================
17-03-18 02:04:30.112 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:04:30.142 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:04:30.142 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:04:30.272 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:04:30.302 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:04:30.302 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:04:30.302 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:04:30.432 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:04:30.462 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:04:30.892 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:04:30.922 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:04:30.922 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:04:30.922 -07 000000610 INF: =================== Cycle #95 ===================
17-03-18 02:04:31.482 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 02:04:31.482 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1448, R2=1504, Total=2952. Warn if over 250 bubbles per interval.
17-03-18 02:04:31.912 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 4.019446,
17-03-18 02:04:32.142 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:04:32.142 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 02:04:32.142 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:04:32.162 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:04:32.162 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 02:04:32.162 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 02:04:32.312 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:04:32.332 -07 000000610 INF: ReagentValve: Recv 00E2\r
17-03-18 02:04:32.332 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 226 steps, expected 204. Error = 22 steps (10.8%)
17-03-18 02:04:32.382 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:04:32.402 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 02:04:32.402 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:04:32.502 -07 000000610 INF: =================== Cycle #95, Pumping Reagent USM (2) ===================
17-03-18 02:04:32.502 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:04:32.502 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:04:32.532 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:04:32.532 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:04:32.532 -07 000000610 INF: =================== Cycle #95, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 02:04:32.662 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:04:32.702 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:04:34.142 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:04:34.172 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:04:34.592 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:04:34.622 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:04:34.622 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 02:04:34.622 -07 000000610 INF: =================== Cycle #95, Pumping Reagent USM (2) ===================
17-03-18 02:04:34.752 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:04:34.782 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:04:34.782 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:04:34.912 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:04:34.942 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:04:34.942 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:04:34.942 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:04:35.072 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:04:35.102 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:04:35.532 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:04:35.562 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:04:35.562 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:04:35.562 -07 000000610 INF: =================== Cycle #95 ===================
17-03-18 02:04:36.481 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 02:04:36.481 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1448, R2=1505, Total=2953. Warn if over 250 bubbles per interval.
17-03-18 02:04:36.781 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:04:36.781 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:04:36.781 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:04:36.801 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 02:04:36.801 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 02:04:36.801 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:04:36.951 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:04:36.971 -07 000000610 INF: ReagentValve: Recv 00E2\r
17-03-18 02:04:36.971 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 226 steps, expected 204. Error = 22 steps (10.8%)
17-03-18 02:04:37.021 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:04:37.041 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:04:37.041 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:04:37.141 -07 000000610 INF: =================== Cycle #95, Pumping Reagent PR2 (3) ===================
17-03-18 02:04:37.141 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:04:37.141 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:04:37.171 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:04:37.171 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:04:37.171 -07 000000610 INF: =================== Cycle #95, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:04:37.281 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 3.99219,
17-03-18 02:04:37.301 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:04:37.341 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:04:38.211 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:04:38.241 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:04:38.241 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 02:04:38.241 -07 000000610 INF: =================== Cycle #95, Pumping Reagent PR2 (3) ===================
17-03-18 02:04:38.371 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:04:38.401 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:04:38.401 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:04:38.531 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:04:38.561 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:04:38.561 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:04:38.561 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:04:38.691 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:04:38.721 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:04:39.151 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:04:39.181 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:04:39.181 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:04:39.181 -07 000000610 INF: =================== Cycle #95 ===================
17-03-18 02:04:39.181 -07 000000608 INF: WaitCommand(10000) start
17-03-18 02:04:39.181 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:04:39.181 -07 000000512 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:04:40.401 -07 000000512 INF: AsyncDelayTimer waited 1214ms
17-03-18 02:04:40.401 -07 000000512 INF: LanePump: Xmit /1?\r
17-03-18 02:04:40.431 -07 000000512 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:04:40.431 -07 000000512 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:04:40.561 -07 000000512 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:04:40.601 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:04:41.481 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 02:04:41.481 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1505, Total=2954. Warn if over 250 bubbles per interval.
17-03-18 02:04:42.131 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-18 02:04:42.161 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:04:42.581 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-18 02:04:42.611 -07 000000512 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:04:42.611 -07 000000512 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 02:04:42.611 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:04:42.611 -07 000000512 INF: ===================  ===================
17-03-18 02:04:42.661 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 3.969015,
17-03-18 02:04:46.481 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:04:46.481 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1505, Total=2954. Warn if over 250 bubbles per interval.
17-03-18 02:04:48.020 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 3.989471,
17-03-18 02:04:49.190 -07 000000608 INF: WaitCommand(10000) end
17-03-18 02:04:49.190 -07 000000610 INF: =================== Cycle #95, Imaging ===================
17-03-18 02:04:49.190 -07 000000610 INF: Imaging Cycle 95: ScanTilesCommand Cycle 95 time start.
17-03-18 02:04:49.200 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 02:04:49.200 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:04:49.220 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:04:49.220 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 02:04:49.220 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 02:04:49.520 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:04:49.540 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 02:04:49.540 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 02:04:49.590 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:04:49.610 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 02:04:49.610 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:04:49.610 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:04:49.610 -07 000000424 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 02:04:49.610 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:04:49.610 -07 000000424 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 02:04:49.620 -07 000000447 INF: FPGA: Recv EXLED1ON 
17-03-18 02:04:49.620 -07 000000424 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 02:04:49.620 -07 000000424 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 02:04:49.620 -07 000000629 INF: FPGA: Recv EXLED1ADCR 23231
17-03-18 02:04:49.630 -07 000000424 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:49.630 -07 000000424 INF: RedLED: Using Red data: Photodiode ADC 23231 --> 7.5 mW (old method), or 205.9 mW (new method). Difference = 198.4 mW
17-03-18 02:04:49.630 -07 000000424 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 02:04:49.630 -07 000000611 INF: FPGA: Recv EXLED1OFF 
17-03-18 02:04:49.640 -07 000000424 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:04:49.640 -07 000000424 INF: RedLED: LED was on for 19 ms
17-03-18 02:04:49.640 -07 000000424 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 22 ms.
17-03-18 02:04:49.640 -07 000000424 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 02:04:49.640 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:04:49.640 -07 000000424 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 02:04:49.640 -07 000000608 INF: FPGA: Recv EXLED2ON 
17-03-18 02:04:49.650 -07 000000424 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:04:49.650 -07 000000424 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 02:04:49.650 -07 000000611 INF: FPGA: Recv EXLED1ADCR 2107
17-03-18 02:04:49.660 -07 000000424 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:49.660 -07 000000424 INF: GreenLED: Using Green data: Photodiode ADC 2107 --> 0.9 mW (old method), or 183.0 mW (new method). Difference = 182.1 mW
17-03-18 02:04:49.660 -07 000000424 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 02:04:49.660 -07 000000579 INF: FPGA: Recv EXLED2OFF 
17-03-18 02:04:49.670 -07 000000424 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:49.670 -07 000000424 INF: GreenLED: LED was on for 19 ms
17-03-18 02:04:49.670 -07 000000424 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 27 ms.
17-03-18 02:04:49.670 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 02:04:49.670 -07 000000512 INF: FPGA: Recv EMCUR 
17-03-18 02:04:49.680 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:04:49.680 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 02:04:50.180 -07 000000424 INF: FPGA: Recv EMOUT
17-03-18 02:04:50.180 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 503 ms overall
17-03-18 02:04:50.180 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 02:04:50.180 -07 000000437 INF: FPGA: Recv EMCUR 
17-03-18 02:04:50.190 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:04:50.190 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:04:50.190 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.126818230486456. ------
17-03-18 02:04:50.200 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17909 mm
17-03-18 02:04:50.200 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:04:50.200 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:04:50.200 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:04:50.200 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 02:04:50.200 -07 000000591 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-18 02:04:50.200 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 39122, sync = True, waitForSettling = False)
17-03-18 02:04:50.200 -07 000000611 INF: Z Motor: Moving to -0.179089 mm, started at -0.126818 mm, distance = -52.27 um
17-03-18 02:04:50.210 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:04:50.210 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:04:50.210 -07 000000629 INF: FPGA: Recv YRDPOS 154380
17-03-18 02:04:50.220 -07 000000611 INF: FPGA: Xmit ZDACW 39122\n [Z Motor]
17-03-18 02:04:50.220 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:04:50.220 -07 000000591 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:04:50.220 -07 000000591 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 02:04:50.220 -07 000000591 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 02:04:50.220 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 02:04:50.230 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:04:50.230 -07 000000611 INF: FPGA: 'ZDACW 39122' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:04:50.240 -07 000000591 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 02:04:50.250 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:04:50.250 -07 000000569 INF: FPGA: Recv ZDACR 39122
17-03-18 02:04:50.260 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:04:50.260 -07 000000611 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 02:04:50.430 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:04:50.430 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:04:51.480 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 02:04:51.490 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:04:51.920 -07 000000502 INF: FPGA: Recv YMVTO 122703 24776
17-03-18 02:04:51.920 -07 000000591 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1679 ms to get response, and 1708 ms overall
17-03-18 02:04:51.920 -07 000000591 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 02:04:51.920 -07 000000591 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24749 steps, but required 24776 steps (15.485 mm). Slippage = 0.017 mm (0.00%).
17-03-18 02:04:51.920 -07 000000591 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1708 ms, distance = 15.468 mm, average velocity = 9.056 mm/sec
17-03-18 02:04:53.390 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 4.007176,
17-03-18 02:04:54.770 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:04:54.770 -07 000000629 INF: FPGA: Recv YRDPOS 122697
17-03-18 02:04:54.780 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:04:54.780 -07 000000591 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:04:54.810 -07 000000591 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:04:54.810 -07 000000591 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 02:04:54.810 -07 000000591 INF: Y Motor: Moved to 59.9106 after 4604 ms
17-03-18 02:04:54.810 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179089 mm (DAC = 39122)
17-03-18 02:04:54.810 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:54.810 -07 000000437 INF: FPGA: Recv ZSGSRD 37168
17-03-18 02:04:54.820 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:04:54.820 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:54.820 -07 000000591 INF: FPGA: Recv ZSGSRD 37170
17-03-18 02:04:54.830 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:54.830 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:54.830 -07 000000569 INF: FPGA: Recv ZSGSRD 37168
17-03-18 02:04:54.840 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:54.840 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:54.840 -07 000000608 INF: FPGA: Recv ZSGSRD 37166
17-03-18 02:04:54.850 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:54.850 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:54.850 -07 000000512 INF: FPGA: Recv ZSGSRD 37167
17-03-18 02:04:54.860 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:54.860 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:54.860 -07 000000585 INF: FPGA: Recv ZSGSRD 37171
17-03-18 02:04:54.870 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:54.870 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:54.870 -07 000000512 INF: FPGA: Recv ZSGSRD 37165
17-03-18 02:04:54.880 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:54.880 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:54.880 -07 000000608 INF: FPGA: Recv ZSGSRD 37165
17-03-18 02:04:54.890 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:54.890 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:54.890 -07 000000591 INF: FPGA: Recv ZSGSRD 37168
17-03-18 02:04:54.900 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:54.900 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:54.900 -07 000000579 INF: FPGA: Recv ZSGSRD 37170
17-03-18 02:04:54.910 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:54.910 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:04:54.910 -07 000000512 INF: FPGA: Recv ZPIEZORD 33502
17-03-18 02:04:54.920 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:54.920 -07 000000447 INF: Z Motor: Piezo is near 51.6 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.970 V. Piezo Error = -8.1 V.
17-03-18 02:04:54.920 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.1 um, Read 10 ADC samples: Avg = 37168 (-178.2 uncal um), Error = 0.9 uncal um, Median = 37168 (-178.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 37165 (-178.2 uncal um), Max = 37171 (-178.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:04:54.920 -07 000000447 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37168, posNoise = 3, negNoise = 3
17-03-18 02:04:54.920 -07 000000447 INF: Z Motor: After move to -0.179089, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:04:54.920 -07 000000447 INF: Z Motor: Settle wait time = 4607 ms, measure time = 108 ms (allowed 150 ms), total time = 4715 ms
17-03-18 02:04:54.920 -07 000000447 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:04:54.970 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4768 ms
17-03-18 02:04:54.970 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:04:54.970 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:04:54.970 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:04:54.970 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:04:54.970 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:04:54.970 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:04:54.970 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:04:54.970 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:04:54.970 -07 000000579 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 02:04:54.990 -07 000000579 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 19 ms.
17-03-18 02:04:54.990 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:04:55.000 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:04:55.000 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:04:55.000 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:04:55.000 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms.
17-03-18 02:04:55.010 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:04:55.050 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:04:55.350 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:04:55.350 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:04:55.350 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:04:55.360 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1109425880, 0x0, 559484976) start.
17-03-18 02:04:55.390 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:04:55.390 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 02:04:55.390 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:04:55.480 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1109425880, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 02:04:55.480 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:04:55.480 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:04:55.480 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 02:04:55.590 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:04:55.590 -07 000000579 INF: Image SNR check: start
17-03-18 02:04:55.590 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:04:55.600 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:04:55.600 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:04:55.610 -07 000000579 INF: Image SNR check: pass  [peak (Max-Min)=161.19]
17-03-18 02:04:55.610 -07 000000579 INF: Autofocus start
17-03-18 02:04:55.610 -07 000000579 INF: MeasureProfile start
17-03-18 02:04:55.620 -07 000000579 INF: MeasureProfile done
17-03-18 02:04:55.620 -07 000000579 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:04:55.620 -07 000000579 INF: Autofocus finished
17-03-18 02:04:55.800 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:04:55.800 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 02:04:55.800 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.179098468896106. ----------
17-03-18 02:04:55.800 -07 000000610 INF: Cycle	95	Tile	1	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:04:55.810 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37637, sync = True, waitForSettling = True)
17-03-18 02:04:55.810 -07 000000610 INF: Z Motor: Moving to -0.172291 mm, started at -0.179098 mm, distance = 6.81 um
17-03-18 02:04:55.810 -07 000000610 INF: FPGA: Xmit ZDACW 37637\n [Z Motor]
17-03-18 02:04:55.810 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:04:55.820 -07 000000610 INF: FPGA: 'ZDACW 37637' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:04:55.820 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:04:55.820 -07 000000462 INF: FPGA: Recv ZDACR 37637
17-03-18 02:04:55.830 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:55.830 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:04:55.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:55.980 -07 000000611 INF: FPGA: Recv ZSGSRD 36107
17-03-18 02:04:55.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:04:55.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:55.990 -07 000000437 INF: FPGA: Recv ZSGSRD 36112
17-03-18 02:04:56.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:56.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:56.000 -07 000000585 INF: FPGA: Recv ZSGSRD 36106
17-03-18 02:04:56.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:56.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:56.010 -07 000000569 INF: FPGA: Recv ZSGSRD 36107
17-03-18 02:04:56.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:56.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:56.020 -07 000000502 INF: FPGA: Recv ZSGSRD 36106
17-03-18 02:04:56.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:56.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:56.030 -07 000000585 INF: FPGA: Recv ZSGSRD 36115
17-03-18 02:04:56.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:56.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:56.040 -07 000000569 INF: FPGA: Recv ZSGSRD 36108
17-03-18 02:04:56.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:56.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:56.050 -07 000000447 INF: FPGA: Recv ZSGSRD 36110
17-03-18 02:04:56.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:56.060 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:56.060 -07 000000512 INF: FPGA: Recv ZSGSRD 36113
17-03-18 02:04:56.070 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:56.070 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:56.070 -07 000000611 INF: FPGA: Recv ZSGSRD 36105
17-03-18 02:04:56.080 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:56.080 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:04:56.080 -07 000000591 INF: FPGA: Recv ZPIEZORD 32101
17-03-18 02:04:56.090 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:56.090 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.743 V. Piezo Error = -8.9 V.
17-03-18 02:04:56.090 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36109 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36108 (-171.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36105 (-171.4 uncal um), Max = 36115 (-171.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:04:56.090 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36109, posNoise = 6, negNoise = 4
17-03-18 02:04:56.090 -07 000000610 INF: Z Motor: After move to -0.172291, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:04:56.090 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 02:04:56.090 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:04:56.090 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:04:56.090 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:04:56.090 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:04:56.090 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:04:56.090 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:04:56.090 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:04:56.090 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:04:56.090 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:04:56.090 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:04:56.090 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:04:56.090 -07 000000579 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 02:04:56.100 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-18 02:04:56.100 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:04:56.110 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:04:56.110 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:04:56.120 -07 000000579 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 02:04:56.120 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:04:56.120 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:04:56.120 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:04:56.130 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:04:56.130 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 36 ms.
17-03-18 02:04:56.130 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37814 150\n [Camera]
17-03-18 02:04:56.330 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:04:56.480 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:04:56.480 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:04:56.720 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:04:56.720 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:04:56.720 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:04:56.730 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:04:56.730 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 02:04:56.730 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:04:56.730 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:04:56.730 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:04:56.860 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:04:56.860 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:04:56.910 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37814 778
17-03-18 02:04:57.060 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:04:57.110 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 02:04:57.110 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:04:57.110 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:04:57.110 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:04:57.110 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:04:57.240 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 02:04:57.240 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 02:04:57.240 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:04:57.240 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:04:57.250 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 522 ms.
17-03-18 02:04:57.250 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:04:57.250 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:04:57.250 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:04:57.260 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:04:57.260 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:04:57.260 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:04:57.260 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:04:57.260 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:04:57.260 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:04:57.260 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:04:57.440 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:04:57.450 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:04:57.450 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37814 150' command took 2 ms to send, 1310 ms to get response, and 1316 ms overall
17-03-18 02:04:57.450 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:04:57.450 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.172295228237981. ------
17-03-18 02:04:57.450 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:04:57.450 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17825 mm
17-03-18 02:04:57.450 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:04:57.460 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:04:57.460 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:04:57.460 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:04:57.460 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38939, sync = True, waitForSettling = False)
17-03-18 02:04:57.460 -07 000000608 INF: Z Motor: Moving to -0.178251 mm, started at -0.172295 mm, distance = -5.96 um
17-03-18 02:04:57.460 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 02:04:57.460 -07 000000437 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-18 02:04:57.470 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:04:57.470 -07 000000424 INF: FPGA: Recv YRDPOS 122697
17-03-18 02:04:57.480 -07 000000608 INF: FPGA: Xmit ZDACW 38939\n [Z Motor]
17-03-18 02:04:57.480 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:04:57.480 -07 000000437 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:04:57.480 -07 000000437 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:04:57.480 -07 000000437 INF: Y Motor: Moving 1331 steps2
17-03-18 02:04:57.480 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:04:57.490 -07 000000608 INF: FPGA: 'ZDACW 38939' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:04:57.490 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:04:57.500 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:04:57.500 -07 000000424 INF: FPGA: Recv ZDACR 38939
17-03-18 02:04:57.510 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:04:57.510 -07 000000608 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 02:04:57.640 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:04:57.640 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:04:57.640 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:04:57.650 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 02:04:57.650 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 02:04:57.650 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:04:57.650 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:04:57.650 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:04:57.650 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:04:57.660 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:04:57.660 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:04:57.660 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 02:04:57.860 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 02:04:57.860 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:04:57.900 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:04:57.900 -07 000000629 INF: FPGA: Recv YRDPOS 124381
17-03-18 02:04:57.910 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:04:57.910 -07 000000437 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:04:57.910 -07 000000437 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 02:04:57.910 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.832 mm, average velocity = 2.144 mm/sec
17-03-18 02:04:58.759 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 4.004458,
17-03-18 02:04:58.859 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:04:58.859 -07 000000424 INF: FPGA: Recv YRDPOS 124381
17-03-18 02:04:58.869 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:04:58.869 -07 000000437 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:04:58.899 -07 000000437 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:04:58.899 -07 000000437 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:04:58.899 -07 000000437 INF: Y Motor: Moved to 60.7329 after 1438 ms (table move)
17-03-18 02:04:58.899 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178251 mm (DAC = 38939)
17-03-18 02:04:58.899 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:58.909 -07 000000585 INF: FPGA: Recv ZSGSRD 37040
17-03-18 02:04:58.909 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 02:04:58.909 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:58.909 -07 000000512 INF: FPGA: Recv ZSGSRD 37037
17-03-18 02:04:58.919 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:04:58.919 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:58.919 -07 000000579 INF: FPGA: Recv ZSGSRD 37043
17-03-18 02:04:58.929 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:58.929 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:58.929 -07 000000611 INF: FPGA: Recv ZSGSRD 37040
17-03-18 02:04:58.939 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:58.939 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:58.939 -07 000000447 INF: FPGA: Recv ZSGSRD 37035
17-03-18 02:04:58.949 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:58.949 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:58.949 -07 000000629 INF: FPGA: Recv ZSGSRD 37044
17-03-18 02:04:58.959 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:58.959 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:58.959 -07 000000424 INF: FPGA: Recv ZSGSRD 37033
17-03-18 02:04:58.969 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:58.969 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:58.969 -07 000000512 INF: FPGA: Recv ZSGSRD 37030
17-03-18 02:04:58.979 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:58.979 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:58.979 -07 000000608 INF: FPGA: Recv ZSGSRD 37038
17-03-18 02:04:58.989 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:58.989 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:58.989 -07 000000569 INF: FPGA: Recv ZSGSRD 37035
17-03-18 02:04:58.999 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:58.999 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:04:58.999 -07 000000608 INF: FPGA: Recv ZPIEZORD 33339
17-03-18 02:04:59.009 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:59.009 -07 000000502 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.942 V. Piezo Error = -8.2 V.
17-03-18 02:04:59.009 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.3 um, Read 10 ADC samples: Avg = 37038 (-177.4 uncal um), Error = 0.9 uncal um, Median = 37038 (-177.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 37030 (-177.3 uncal um), Max = 37044 (-177.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:04:59.009 -07 000000502 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37038, posNoise = 6, negNoise = 8
17-03-18 02:04:59.009 -07 000000502 INF: Z Motor: After move to -0.178251, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:04:59.009 -07 000000502 INF: Z Motor: Settle wait time = 1444 ms, measure time = 102 ms (allowed 150 ms), total time = 1546 ms
17-03-18 02:04:59.009 -07 000000502 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 02:04:59.059 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-18 02:04:59.059 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:04:59.059 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:04:59.059 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:04:59.059 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:04:59.059 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:04:59.059 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:04:59.059 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:04:59.059 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:04:59.069 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:04:59.069 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:04:59.069 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:04:59.079 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 02:04:59.079 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 02:04:59.079 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:04:59.129 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 02:04:59.429 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 02:04:59.429 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 02:04:59.429 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:04:59.429 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1124101960, 0x0, 559484976) start.
17-03-18 02:04:59.459 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:04:59.469 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 02:04:59.469 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 387 ms overall
17-03-18 02:04:59.539 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1124101960, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:04:59.539 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:04:59.549 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:04:59.549 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:04:59.569 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:04:59.569 -07 000000424 INF: Autofocus start
17-03-18 02:04:59.569 -07 000000424 INF: MeasureProfile start
17-03-18 02:04:59.569 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:04:59.579 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:04:59.579 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:04:59.589 -07 000000424 INF: MeasureProfile done
17-03-18 02:04:59.589 -07 000000424 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:04:59.589 -07 000000424 INF: Autofocus finished
17-03-18 02:04:59.779 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:04:59.779 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:04:59.789 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.178263321317677. ----------
17-03-18 02:04:59.789 -07 000000610 INF: Cycle	95	Tile	2	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:04:59.789 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37454, sync = True, waitForSettling = True)
17-03-18 02:04:59.789 -07 000000610 INF: Z Motor: Moving to -0.171453 mm, started at -0.178263 mm, distance = 6.81 um
17-03-18 02:04:59.789 -07 000000610 INF: FPGA: Xmit ZDACW 37454\n [Z Motor]
17-03-18 02:04:59.789 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:04:59.799 -07 000000610 INF: FPGA: 'ZDACW 37454' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:04:59.799 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:04:59.799 -07 000000462 INF: FPGA: Recv ZDACR 37454
17-03-18 02:04:59.809 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:59.809 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:04:59.959 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:59.959 -07 000000502 INF: FPGA: Recv ZSGSRD 35980
17-03-18 02:04:59.969 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:59.969 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:59.969 -07 000000569 INF: FPGA: Recv ZSGSRD 35983
17-03-18 02:04:59.979 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:59.979 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:59.979 -07 000000608 INF: FPGA: Recv ZSGSRD 35978
17-03-18 02:04:59.989 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:59.989 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:59.989 -07 000000512 INF: FPGA: Recv ZSGSRD 35981
17-03-18 02:04:59.999 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:04:59.999 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:04:59.999 -07 000000629 INF: FPGA: Recv ZSGSRD 35981
17-03-18 02:05:00.009 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:00.009 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:00.009 -07 000000462 INF: FPGA: Recv ZSGSRD 35982
17-03-18 02:05:00.019 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:00.019 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:00.019 -07 000000424 INF: FPGA: Recv ZSGSRD 35978
17-03-18 02:05:00.029 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:00.029 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:00.029 -07 000000512 INF: FPGA: Recv ZSGSRD 35979
17-03-18 02:05:00.039 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:00.039 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:00.039 -07 000000502 INF: FPGA: Recv ZSGSRD 35983
17-03-18 02:05:00.049 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:00.049 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:00.049 -07 000000424 INF: FPGA: Recv ZSGSRD 35976
17-03-18 02:05:00.059 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:00.059 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:05:00.059 -07 000000611 INF: FPGA: Recv ZPIEZORD 31915
17-03-18 02:05:00.069 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:00.069 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.715 V. Piezo Error = -9.0 V.
17-03-18 02:05:00.069 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35980 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35980 (-170.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35976 (-170.6 uncal um), Max = 35983 (-170.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:05:00.069 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35980, posNoise = 3, negNoise = 4
17-03-18 02:05:00.069 -07 000000610 INF: Z Motor: After move to -0.171453, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:05:00.069 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:05:00.069 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:05:00.069 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:05:00.069 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:05:00.069 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:05:00.069 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:05:00.069 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:05:00.069 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:05:00.069 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:05:00.069 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:05:00.069 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:05:00.069 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:05:00.069 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:05:00.079 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:05:00.079 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:05:00.079 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:05:00.079 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:05:00.089 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:05:00.089 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:05:00.089 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:05:00.089 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:05:00.089 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37631 150\n [Camera]
17-03-18 02:05:00.289 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 02:05:00.679 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:05:00.679 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:05:00.679 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:05:00.679 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:05:00.679 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 02:05:00.679 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:05:00.679 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:05:00.679 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:05:00.679 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:05:00.679 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 02:05:00.869 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37631 778
17-03-18 02:05:01.029 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:05:01.059 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 02:05:01.059 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 02:05:01.059 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:01.059 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:05:01.059 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 02:05:01.059 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 02:05:01.059 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:01.069 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:05:01.069 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:05:01.069 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:05:01.209 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:05:01.209 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:05:01.209 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:05:01.209 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:05:01.209 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:05:01.219 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:05:01.219 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:05:01.219 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:05:01.339 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:05:01.339 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 02:05:01.399 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:05:01.399 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:05:01.399 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37631 150' command took 2 ms to send, 1309 ms to get response, and 1316 ms overall
17-03-18 02:05:01.409 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:05:01.409 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.171466504871694. ------
17-03-18 02:05:01.409 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17814 mm
17-03-18 02:05:01.409 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:05:01.409 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:05:01.409 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 02:05:01.409 -07 000000502 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-18 02:05:01.409 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:05:01.409 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38915, sync = True, waitForSettling = False)
17-03-18 02:05:01.409 -07 000000579 INF: Z Motor: Moving to -0.178141 mm, started at -0.171467 mm, distance = -6.67 um
17-03-18 02:05:01.419 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:05:01.419 -07 000000579 INF: FPGA: Xmit ZDACW 38915\n [Z Motor]
17-03-18 02:05:01.419 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 02:05:01.429 -07 000000579 INF: FPGA: 'ZDACW 38915' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:05:01.429 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:05:01.429 -07 000000512 INF: FPGA: Recv ZDACR 38915
17-03-18 02:05:01.439 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:01.439 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:01.439 -07 000000579 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-18 02:05:01.439 -07 000000608 INF: FPGA: Recv YRDPOS 124382
17-03-18 02:05:01.449 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 02:05:01.449 -07 000000502 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:01.449 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:05:01.449 -07 000000502 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:05:01.449 -07 000000502 INF: Y Motor: Moving 1343 steps-20
17-03-18 02:05:01.459 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:05:01.479 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:05:01.479 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:05:01.599 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 02:05:01.599 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:05:01.599 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:01.599 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:05:01.599 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:05:01.649 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:05:01.649 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 233 ms overall
17-03-18 02:05:01.709 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 02:05:01.709 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 02:05:01.709 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:01.719 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:05:01.719 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 507 ms.
17-03-18 02:05:01.829 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 02:05:01.829 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-18 02:05:01.879 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:01.879 -07 000000437 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:05:01.889 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:05:01.889 -07 000000502 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:01.889 -07 000000502 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 02:05:01.889 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.840 mm, average velocity = 2.204 mm/sec
17-03-18 02:05:02.839 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:02.839 -07 000000424 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:05:02.849 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:02.849 -07 000000502 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:02.879 -07 000000502 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:05:02.879 -07 000000502 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:05:02.879 -07 000000502 INF: Y Motor: Moved to 61.5640 after 1466 ms (table move)
17-03-18 02:05:02.879 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178141 mm (DAC = 38915)
17-03-18 02:05:02.879 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:02.889 -07 000000585 INF: FPGA: Recv ZSGSRD 37018
17-03-18 02:05:02.889 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-18 02:05:02.889 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:02.889 -07 000000502 INF: FPGA: Recv ZSGSRD 37028
17-03-18 02:05:02.899 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:05:02.899 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:02.899 -07 000000585 INF: FPGA: Recv ZSGSRD 37023
17-03-18 02:05:02.909 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:02.909 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:02.909 -07 000000502 INF: FPGA: Recv ZSGSRD 37026
17-03-18 02:05:02.919 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:02.919 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:02.919 -07 000000585 INF: FPGA: Recv ZSGSRD 37018
17-03-18 02:05:02.929 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:02.929 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:02.929 -07 000000502 INF: FPGA: Recv ZSGSRD 37019
17-03-18 02:05:02.939 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:02.939 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:02.939 -07 000000629 INF: FPGA: Recv ZSGSRD 37028
17-03-18 02:05:02.949 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:02.949 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:02.949 -07 000000462 INF: FPGA: Recv ZSGSRD 37013
17-03-18 02:05:02.959 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:02.959 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:02.959 -07 000000629 INF: FPGA: Recv ZSGSRD 37017
17-03-18 02:05:02.969 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:02.969 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:02.969 -07 000000569 INF: FPGA: Recv ZSGSRD 37018
17-03-18 02:05:02.979 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:02.979 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:05:02.979 -07 000000512 INF: FPGA: Recv ZPIEZORD 33315
17-03-18 02:05:02.989 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:02.989 -07 000000447 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.938 V. Piezo Error = -8.2 V.
17-03-18 02:05:02.989 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.1 um, Read 10 ADC samples: Avg = 37021 (-177.3 uncal um), Error = 0.9 uncal um, Median = 37018 (-177.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 37013 (-177.2 uncal um), Max = 37028 (-177.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:05:02.989 -07 000000447 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37021, posNoise = 7, negNoise = 8
17-03-18 02:05:02.989 -07 000000447 INF: Z Motor: After move to -0.178141, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:05:02.989 -07 000000447 INF: Z Motor: Settle wait time = 1468 ms, measure time = 103 ms (allowed 150 ms), total time = 1571 ms
17-03-18 02:05:02.989 -07 000000447 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 02:05:03.039 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 02:05:03.039 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:05:03.039 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:05:03.039 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:05:03.039 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:05:03.039 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:05:03.039 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:05:03.039 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:05:03.039 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:05:03.039 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:05:03.049 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:05:03.049 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:05:03.049 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:05:03.049 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:05:03.059 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:05:03.099 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:05:03.399 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:05:03.399 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:05:03.399 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:05:03.409 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 02:05:03.439 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:05:03.439 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 02:05:03.439 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:05:03.519 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:05:03.519 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:03.519 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:05:03.519 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:05:03.539 -07 000000512 INF: Autofocus start
17-03-18 02:05:03.539 -07 000000512 INF: MeasureProfile start
17-03-18 02:05:03.539 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:05:03.539 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:05:03.549 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:05:03.549 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:05:03.549 -07 000000512 INF: MeasureProfile done
17-03-18 02:05:03.549 -07 000000512 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:05:03.549 -07 000000512 INF: Autofocus finished
17-03-18 02:05:03.749 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:05:03.749 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 02:05:03.749 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.178154109711267. ----------
17-03-18 02:05:03.759 -07 000000610 INF: Cycle	95	Tile	3	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:05:03.759 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37430, sync = True, waitForSettling = True)
17-03-18 02:05:03.759 -07 000000610 INF: Z Motor: Moving to -0.171344 mm, started at -0.178154 mm, distance = 6.81 um
17-03-18 02:05:03.759 -07 000000610 INF: FPGA: Xmit ZDACW 37430\n [Z Motor]
17-03-18 02:05:03.759 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 02:05:03.769 -07 000000610 INF: FPGA: 'ZDACW 37430' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:05:03.769 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:05:03.769 -07 000000591 INF: FPGA: Recv ZDACR 37430
17-03-18 02:05:03.779 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:03.779 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:05:03.929 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:03.929 -07 000000579 INF: FPGA: Recv ZSGSRD 35960
17-03-18 02:05:03.939 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:05:03.939 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:03.939 -07 000000608 INF: FPGA: Recv ZSGSRD 35971
17-03-18 02:05:03.949 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:03.949 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:03.949 -07 000000629 INF: FPGA: Recv ZSGSRD 35963
17-03-18 02:05:03.959 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:03.959 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:03.959 -07 000000512 INF: FPGA: Recv ZSGSRD 35963
17-03-18 02:05:03.969 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:03.969 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:03.969 -07 000000569 INF: FPGA: Recv ZSGSRD 35956
17-03-18 02:05:03.979 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:03.979 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:03.979 -07 000000447 INF: FPGA: Recv ZSGSRD 35958
17-03-18 02:05:03.989 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:03.989 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:03.989 -07 000000608 INF: FPGA: Recv ZSGSRD 35964
17-03-18 02:05:03.999 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:03.999 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:03.999 -07 000000462 INF: FPGA: Recv ZSGSRD 35957
17-03-18 02:05:04.009 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:04.009 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:04.009 -07 000000437 INF: FPGA: Recv ZSGSRD 35963
17-03-18 02:05:04.019 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:04.019 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:04.019 -07 000000512 INF: FPGA: Recv ZSGSRD 35964
17-03-18 02:05:04.029 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:04.029 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:05:04.029 -07 000000608 INF: FPGA: Recv ZPIEZORD 31916
17-03-18 02:05:04.039 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:04.039 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.711 V. Piezo Error = -8.9 V.
17-03-18 02:05:04.039 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.3 um, Read 10 ADC samples: Avg = 35962 (-170.5 uncal um), Error = 0.9 uncal um, Median = 35963 (-170.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35956 (-170.4 uncal um), Max = 35971 (-170.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:05:04.039 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35962, posNoise = 9, negNoise = 6
17-03-18 02:05:04.039 -07 000000610 INF: Z Motor: After move to -0.171344, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:05:04.039 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 02:05:04.039 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:05:04.039 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:05:04.039 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:05:04.039 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:05:04.039 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:05:04.039 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:05:04.039 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:05:04.039 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:05:04.039 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:05:04.039 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:05:04.039 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:05:04.039 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:05:04.049 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:05:04.049 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:05:04.049 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:05:04.049 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:05:04.059 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:05:04.059 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:05:04.059 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:05:04.059 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:05:04.059 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37607 150\n [Camera]
17-03-18 02:05:04.129 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 4.008536,
17-03-18 02:05:04.259 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:05:04.649 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:05:04.649 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:05:04.649 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:05:04.659 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:05:04.659 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:05:04.659 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:05:04.659 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:05:04.659 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-18 02:05:04.659 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:05:04.659 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:05:04.849 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37607 778
17-03-18 02:05:04.989 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:05:05.029 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 02:05:05.029 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 02:05:05.029 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:05.029 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 02:05:05.029 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 02:05:05.029 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:05.039 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:05:05.039 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:05:05.039 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:05:05.039 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:05:05.179 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:05:05.179 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:05:05.189 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:05:05.189 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:05:05.189 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:05:05.189 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:05:05.189 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:05:05.189 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:05:05.319 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:05:05.319 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 02:05:05.379 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:05:05.379 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:05:05.379 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37607 150' command took 2 ms to send, 1311 ms to get response, and 1316 ms overall
17-03-18 02:05:05.379 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:05:05.379 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.171350869053142. ------
17-03-18 02:05:05.379 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:05:05.379 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17763 mm
17-03-18 02:05:05.379 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:05:05.379 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:05:05.389 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:05:05.389 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:05:05.389 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 38803, sync = True, waitForSettling = False)
17-03-18 02:05:05.389 -07 000000629 INF: Z Motor: Moving to -0.177629 mm, started at -0.171351 mm, distance = -6.28 um
17-03-18 02:05:05.389 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 02:05:05.389 -07 000000611 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-18 02:05:05.399 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:05.399 -07 000000579 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:05:05.409 -07 000000629 INF: FPGA: Xmit ZDACW 38803\n [Z Motor]
17-03-18 02:05:05.409 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:05:05.409 -07 000000611 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:05.409 -07 000000611 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:05:05.409 -07 000000611 INF: Y Motor: Moving 1342 steps-18
17-03-18 02:05:05.409 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:05:05.419 -07 000000629 INF: FPGA: 'ZDACW 38803' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:05:05.419 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:05:05.429 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:05:05.429 -07 000000579 INF: FPGA: Recv ZDACR 38803
17-03-18 02:05:05.439 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:05:05.439 -07 000000629 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 02:05:05.569 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 02:05:05.579 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:05:05.579 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:05.579 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:05:05.579 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:05:05.589 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:05:05.589 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 02:05:05.699 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 02:05:05.699 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 02:05:05.699 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:05.699 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:05:05.709 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 521 ms.
17-03-18 02:05:05.789 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 02:05:05.789 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:05:05.839 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:05.839 -07 000000512 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:05:05.849 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:05:05.849 -07 000000611 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:05.849 -07 000000611 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 02:05:05.849 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.167 mm/sec
17-03-18 02:05:06.479 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:05:06.479 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:05:06.799 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:06.799 -07 000000447 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:05:06.809 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:05:06.809 -07 000000611 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:06.829 -07 000000611 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:05:06.829 -07 000000611 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:05:06.829 -07 000000611 INF: Y Motor: Moved to 62.3955 after 1446 ms (table move)
17-03-18 02:05:06.839 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177629 mm (DAC = 38803)
17-03-18 02:05:06.839 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:06.839 -07 000000462 INF: FPGA: Recv ZSGSRD 36944
17-03-18 02:05:06.849 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:05:06.849 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:06.849 -07 000000462 INF: FPGA: Recv ZSGSRD 36948
17-03-18 02:05:06.859 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:06.859 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:06.859 -07 000000462 INF: FPGA: Recv ZSGSRD 36947
17-03-18 02:05:06.869 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:06.869 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:06.869 -07 000000462 INF: FPGA: Recv ZSGSRD 36940
17-03-18 02:05:06.879 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:06.879 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:06.879 -07 000000512 INF: FPGA: Recv ZSGSRD 36938
17-03-18 02:05:06.889 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:06.889 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:06.889 -07 000000447 INF: FPGA: Recv ZSGSRD 36942
17-03-18 02:05:06.899 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:06.899 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:06.899 -07 000000608 INF: FPGA: Recv ZSGSRD 36937
17-03-18 02:05:06.909 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:06.909 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:06.909 -07 000000424 INF: FPGA: Recv ZSGSRD 36938
17-03-18 02:05:06.919 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:06.919 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:06.919 -07 000000424 INF: FPGA: Recv ZSGSRD 36948
17-03-18 02:05:06.929 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:06.929 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:06.929 -07 000000608 INF: FPGA: Recv ZSGSRD 36948
17-03-18 02:05:06.939 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:06.939 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:05:06.939 -07 000000447 INF: FPGA: Recv ZPIEZORD 33243
17-03-18 02:05:06.949 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:06.949 -07 000000585 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.921 V. Piezo Error = -8.2 V.
17-03-18 02:05:06.949 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.6 um, Read 10 ADC samples: Avg = 36943 (-176.8 uncal um), Error = 0.9 uncal um, Median = 36943 (-176.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36937 (-176.7 uncal um), Max = 36948 (-176.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:05:06.949 -07 000000585 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36943, posNoise = 5, negNoise = 6
17-03-18 02:05:06.949 -07 000000585 INF: Z Motor: After move to -0.177629, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:05:06.949 -07 000000585 INF: Z Motor: Settle wait time = 1450 ms, measure time = 109 ms (allowed 150 ms), total time = 1559 ms
17-03-18 02:05:06.949 -07 000000585 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:05:06.999 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 02:05:06.999 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:05:06.999 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:05:06.999 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:05:06.999 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:05:06.999 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:05:06.999 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:05:06.999 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:05:06.999 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:05:06.999 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:05:07.009 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:05:07.009 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:05:07.009 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:05:07.009 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:05:07.019 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:05:07.059 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:05:07.359 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:05:07.359 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:05:07.359 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:05:07.359 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1094749800, 0x0, 559484976) start.
17-03-18 02:05:07.399 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:05:07.399 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 02:05:07.399 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:05:07.479 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1094749800, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:05:07.479 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:07.479 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:05:07.479 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:05:07.499 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:05:07.499 -07 000000502 INF: Autofocus start
17-03-18 02:05:07.499 -07 000000502 INF: MeasureProfile start
17-03-18 02:05:07.499 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:05:07.509 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:05:07.509 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:05:07.509 -07 000000502 INF: MeasureProfile done
17-03-18 02:05:07.509 -07 000000502 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:05:07.509 -07 000000502 INF: Autofocus finished
17-03-18 02:05:07.709 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:05:07.709 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:05:07.709 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.17765302116421. ----------
17-03-18 02:05:07.709 -07 000000610 INF: Cycle	95	Tile	4	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:05:07.719 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37318, sync = True, waitForSettling = True)
17-03-18 02:05:07.719 -07 000000610 INF: Z Motor: Moving to -0.170831 mm, started at -0.177653 mm, distance = 6.82 um
17-03-18 02:05:07.719 -07 000000610 INF: FPGA: Xmit ZDACW 37318\n [Z Motor]
17-03-18 02:05:07.719 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:05:07.729 -07 000000610 INF: FPGA: 'ZDACW 37318' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:05:07.729 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:05:07.729 -07 000000437 INF: FPGA: Recv ZDACR 37318
17-03-18 02:05:07.739 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:07.739 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:05:07.889 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:07.889 -07 000000512 INF: FPGA: Recv ZSGSRD 35875
17-03-18 02:05:07.899 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:05:07.899 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:07.899 -07 000000447 INF: FPGA: Recv ZSGSRD 35883
17-03-18 02:05:07.909 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:07.909 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:07.909 -07 000000611 INF: FPGA: Recv ZSGSRD 35886
17-03-18 02:05:07.919 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:07.919 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:07.919 -07 000000579 INF: FPGA: Recv ZSGSRD 35878
17-03-18 02:05:07.929 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:07.929 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:07.929 -07 000000512 INF: FPGA: Recv ZSGSRD 35883
17-03-18 02:05:07.939 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:07.939 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:07.939 -07 000000579 INF: FPGA: Recv ZSGSRD 35882
17-03-18 02:05:07.949 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:07.949 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:07.949 -07 000000591 INF: FPGA: Recv ZSGSRD 35885
17-03-18 02:05:07.959 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:07.959 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:07.959 -07 000000585 INF: FPGA: Recv ZSGSRD 35890
17-03-18 02:05:07.969 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:07.969 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:07.969 -07 000000437 INF: FPGA: Recv ZSGSRD 35878
17-03-18 02:05:07.979 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:07.979 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:07.979 -07 000000512 INF: FPGA: Recv ZSGSRD 35882
17-03-18 02:05:07.989 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:07.989 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:05:07.989 -07 000000591 INF: FPGA: Recv ZPIEZORD 31801
17-03-18 02:05:07.999 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:07.999 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.694 V. Piezo Error = -9.0 V.
17-03-18 02:05:07.999 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35882 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35882 (-170.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35875 (-169.9 uncal um), Max = 35890 (-170.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:05:07.999 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35882, posNoise = 8, negNoise = 7
17-03-18 02:05:07.999 -07 000000610 INF: Z Motor: After move to -0.170831, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:05:07.999 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:05:07.999 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:05:07.999 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:05:07.999 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:05:07.999 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:05:07.999 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:05:07.999 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:05:07.999 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:05:07.999 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:05:07.999 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:05:07.999 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:05:07.999 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:05:07.999 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:05:07.999 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:05:07.999 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:05:07.999 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:05:08.009 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:05:08.009 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:05:08.009 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 02:05:08.009 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:05:08.009 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:05:08.019 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37495 150\n [Camera]
17-03-18 02:05:08.219 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:05:08.609 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:05:08.609 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:05:08.609 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:05:08.609 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:05:08.609 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:05:08.609 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:05:08.619 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:05:08.619 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1113831184, 0x0, 391868352) start.
17-03-18 02:05:08.619 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:05:08.619 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:05:08.799 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37495 778
17-03-18 02:05:08.949 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:05:08.999 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1113831184, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 02:05:08.999 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:05:08.999 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:09.009 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:05:09.009 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:05:09.009 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 02:05:09.009 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:05:09.009 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:09.009 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:05:09.019 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 02:05:09.139 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:05:09.139 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:05:09.139 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:05:09.139 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:05:09.139 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:05:09.139 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:05:09.139 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:05:09.139 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:05:09.139 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:05:09.149 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:05:09.328 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:05:09.328 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:05:09.328 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37495 150' command took 2 ms to send, 1308 ms to get response, and 1316 ms overall
17-03-18 02:05:09.338 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:05:09.338 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.170836932081802. ------
17-03-18 02:05:09.338 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:05:09.338 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17742 mm
17-03-18 02:05:09.338 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:05:09.338 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:05:09.338 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 02:05:09.338 -07 000000462 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 02:05:09.338 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38757, sync = True, waitForSettling = False)
17-03-18 02:05:09.338 -07 000000579 INF: Z Motor: Moving to -0.177418 mm, started at -0.170837 mm, distance = -6.58 um
17-03-18 02:05:09.348 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:05:09.348 -07 000000579 INF: FPGA: Xmit ZDACW 38757\n [Z Motor]
17-03-18 02:05:09.348 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 02:05:09.358 -07 000000579 INF: FPGA: 'ZDACW 38757' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:05:09.358 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:05:09.358 -07 000000447 INF: FPGA: Recv ZDACR 38757
17-03-18 02:05:09.368 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:09.368 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:09.368 -07 000000579 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 02:05:09.368 -07 000000424 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:05:09.378 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:05:09.378 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 02:05:09.378 -07 000000462 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:09.378 -07 000000462 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:05:09.378 -07 000000462 INF: Y Motor: Moving 1339 steps-15
17-03-18 02:05:09.388 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:05:09.508 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 4.005817,
17-03-18 02:05:09.528 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 02:05:09.528 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:05:09.528 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:09.528 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 02:05:09.538 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:05:09.538 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 02:05:09.538 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:05:09.538 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:09.538 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:05:09.548 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 02:05:09.578 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:05:09.578 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-18 02:05:09.768 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 02:05:09.768 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-18 02:05:09.808 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:09.808 -07 000000512 INF: FPGA: Recv YRDPOS 129483
17-03-18 02:05:09.818 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:05:09.818 -07 000000462 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:09.818 -07 000000462 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 02:05:09.818 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.837 mm, average velocity = 2.152 mm/sec
17-03-18 02:05:10.768 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:10.768 -07 000000579 INF: FPGA: Recv YRDPOS 129483
17-03-18 02:05:10.778 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:05:10.778 -07 000000462 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:10.808 -07 000000462 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:05:10.808 -07 000000462 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:05:10.808 -07 000000462 INF: Y Motor: Moved to 63.2241 after 1468 ms (table move)
17-03-18 02:05:10.818 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177418 mm (DAC = 38757)
17-03-18 02:05:10.818 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:10.818 -07 000000462 INF: FPGA: Recv ZSGSRD 36914
17-03-18 02:05:10.828 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:10.828 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:10.828 -07 000000585 INF: FPGA: Recv ZSGSRD 36914
17-03-18 02:05:10.838 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:10.838 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:10.838 -07 000000512 INF: FPGA: Recv ZSGSRD 36902
17-03-18 02:05:10.848 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:10.848 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:10.848 -07 000000424 INF: FPGA: Recv ZSGSRD 36902
17-03-18 02:05:10.858 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:10.858 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:10.858 -07 000000585 INF: FPGA: Recv ZSGSRD 36904
17-03-18 02:05:10.868 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:10.868 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:10.868 -07 000000611 INF: FPGA: Recv ZSGSRD 36903
17-03-18 02:05:10.878 -07 000000437 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:10.878 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:10.878 -07 000000462 INF: FPGA: Recv ZSGSRD 36909
17-03-18 02:05:10.888 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:10.888 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:10.888 -07 000000608 INF: FPGA: Recv ZSGSRD 36902
17-03-18 02:05:10.898 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:10.898 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:10.898 -07 000000608 INF: FPGA: Recv ZSGSRD 36912
17-03-18 02:05:10.908 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:10.908 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:10.908 -07 000000608 INF: FPGA: Recv ZSGSRD 36905
17-03-18 02:05:10.918 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:10.918 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:05:10.918 -07 000000608 INF: FPGA: Recv ZPIEZORD 33199
17-03-18 02:05:10.928 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:10.928 -07 000000437 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.914 V. Piezo Error = -8.2 V.
17-03-18 02:05:10.928 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.4 um, Read 10 ADC samples: Avg = 36907 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36904 (-176.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36902 (-176.5 uncal um), Max = 36914 (-176.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:05:10.928 -07 000000437 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36907, posNoise = 7, negNoise = 5
17-03-18 02:05:10.928 -07 000000437 INF: Z Motor: After move to -0.177418, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:05:10.928 -07 000000437 INF: Z Motor: Settle wait time = 1470 ms, measure time = 110 ms (allowed 150 ms), total time = 1580 ms
17-03-18 02:05:10.928 -07 000000437 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:05:10.968 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 02:05:10.968 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:05:10.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:05:10.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:05:10.968 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:05:10.968 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:05:10.968 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:05:10.968 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:05:10.968 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:05:10.968 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:05:10.978 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:05:10.978 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:05:10.988 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 02:05:10.988 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 02:05:10.988 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:05:11.038 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:05:11.338 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:05:11.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:05:11.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:05:11.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1149253448, 0x0, 559484976) start.
17-03-18 02:05:11.368 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:05:11.378 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 02:05:11.378 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 385 ms overall
17-03-18 02:05:11.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1149253448, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 02:05:11.458 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:11.458 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:05:11.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-18 02:05:11.478 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:05:11.478 -07 000000585 INF: Autofocus start
17-03-18 02:05:11.478 -07 000000585 INF: MeasureProfile start
17-03-18 02:05:11.478 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:05:11.478 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:05:11.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:05:11.488 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:05:11.488 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:05:11.488 -07 000000585 INF: MeasureProfile done
17-03-18 02:05:11.498 -07 000000585 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:05:11.498 -07 000000585 INF: Autofocus finished
17-03-18 02:05:11.688 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:05:11.688 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 198 ms to get response, and 207 ms overall
17-03-18 02:05:11.698 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.177421749527107. ----------
17-03-18 02:05:11.708 -07 000000610 INF: Cycle	95	Tile	5	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:05:11.708 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37254, sync = True, waitForSettling = True)
17-03-18 02:05:11.708 -07 000000610 INF: Z Motor: Moving to -0.170538 mm, started at -0.177422 mm, distance = 6.88 um
17-03-18 02:05:11.708 -07 000000610 INF: FPGA: Xmit ZDACW 37254\n [Z Motor]
17-03-18 02:05:11.708 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:05:11.718 -07 000000610 INF: FPGA: 'ZDACW 37254' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:05:11.718 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:05:11.718 -07 000000424 INF: FPGA: Recv ZDACR 37254
17-03-18 02:05:11.728 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:11.728 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:05:11.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:11.878 -07 000000591 INF: FPGA: Recv ZSGSRD 35831
17-03-18 02:05:11.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:05:11.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:11.888 -07 000000608 INF: FPGA: Recv ZSGSRD 35832
17-03-18 02:05:11.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:11.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:11.898 -07 000000629 INF: FPGA: Recv ZSGSRD 35838
17-03-18 02:05:11.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:11.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:11.908 -07 000000591 INF: FPGA: Recv ZSGSRD 35845
17-03-18 02:05:11.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:11.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:11.918 -07 000000608 INF: FPGA: Recv ZSGSRD 35838
17-03-18 02:05:11.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:11.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:11.928 -07 000000512 INF: FPGA: Recv ZSGSRD 35839
17-03-18 02:05:11.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:11.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:11.938 -07 000000502 INF: FPGA: Recv ZSGSRD 35837
17-03-18 02:05:11.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:11.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:11.948 -07 000000608 INF: FPGA: Recv ZSGSRD 35839
17-03-18 02:05:11.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:11.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:11.958 -07 000000629 INF: FPGA: Recv ZSGSRD 35835
17-03-18 02:05:11.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:11.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:11.968 -07 000000579 INF: FPGA: Recv ZSGSRD 35840
17-03-18 02:05:11.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:11.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:05:11.978 -07 000000608 INF: FPGA: Recv ZPIEZORD 31773
17-03-18 02:05:11.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:11.988 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.685 V. Piezo Error = -9.0 V.
17-03-18 02:05:11.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35837 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35838 (-169.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35831 (-169.6 uncal um), Max = 35845 (-169.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:05:11.988 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35837, posNoise = 8, negNoise = 6
17-03-18 02:05:11.988 -07 000000610 INF: Z Motor: After move to -0.170538, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:05:11.988 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 02:05:11.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:05:11.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:05:11.988 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:05:11.988 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:05:11.988 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:05:11.988 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:05:11.988 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:05:11.988 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:05:11.988 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 02:05:11.988 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:05:11.998 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:05:11.998 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:05:11.998 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:05:11.998 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:05:11.998 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:05:11.998 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:05:12.008 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:05:12.008 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:05:12.008 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:05:12.008 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:05:12.008 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37431 150\n [Camera]
17-03-18 02:05:12.208 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:05:12.598 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:05:12.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:05:12.598 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:05:12.598 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:05:12.598 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:05:12.608 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:05:12.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:05:12.608 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:05:12.738 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:05:12.738 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 02:05:12.798 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37431 778
17-03-18 02:05:12.938 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:05:12.988 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 02:05:12.988 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:05:12.988 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:12.988 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:05:12.988 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:05:13.108 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 02:05:13.108 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 02:05:13.108 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:13.108 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:05:13.118 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 512 ms.
17-03-18 02:05:13.128 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:05:13.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:05:13.138 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:05:13.138 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:05:13.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:05:13.138 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:05:13.138 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:05:13.138 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:05:13.138 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:05:13.138 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-18 02:05:13.328 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:05:13.328 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:05:13.328 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37431 150' command took 2 ms to send, 1313 ms to get response, and 1319 ms overall
17-03-18 02:05:13.328 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:05:13.328 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.170547842535422. ------
17-03-18 02:05:13.328 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:05:13.328 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17664 mm
17-03-18 02:05:13.328 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:05:13.338 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:05:13.338 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-18 02:05:13.338 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:05:13.338 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 02:05:13.338 -07 000000424 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 02:05:13.338 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38588, sync = True, waitForSettling = False)
17-03-18 02:05:13.338 -07 000000608 INF: Z Motor: Moving to -0.176645 mm, started at -0.170548 mm, distance = -6.10 um
17-03-18 02:05:13.348 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:13.348 -07 000000629 INF: FPGA: Recv YRDPOS 129484
17-03-18 02:05:13.358 -07 000000608 INF: FPGA: Xmit ZDACW 38588\n [Z Motor]
17-03-18 02:05:13.358 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:05:13.358 -07 000000424 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:13.358 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 02:05:13.358 -07 000000424 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:05:13.358 -07 000000424 INF: Y Motor: Moving 1341 steps-17
17-03-18 02:05:13.368 -07 000000608 INF: FPGA: 'ZDACW 38588' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:05:13.368 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:05:13.368 -07 000000611 INF: FPGA: Recv ZDACR 38588
17-03-18 02:05:13.378 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:05:13.378 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:13.378 -07 000000608 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 02:05:13.518 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 02:05:13.518 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 02:05:13.518 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:13.518 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 02:05:13.518 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 02:05:13.518 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:13.518 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:05:13.518 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:05:13.518 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:05:13.528 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:05:13.538 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:05:13.538 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 202 ms overall
17-03-18 02:05:13.748 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 02:05:13.748 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 02:05:13.798 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:13.808 -07 000000591 INF: FPGA: Recv YRDPOS 131188
17-03-18 02:05:13.808 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:05:13.808 -07 000000424 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:13.808 -07 000000424 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-18 02:05:13.808 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.838 mm, average velocity = 2.128 mm/sec
17-03-18 02:05:14.758 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:14.758 -07 000000444 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:05:14.768 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:05:14.768 -07 000000424 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:14.788 -07 000000424 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:05:14.788 -07 000000424 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:05:14.788 -07 000000424 INF: Y Motor: Moved to 64.0571 after 1450 ms (table move)
17-03-18 02:05:14.788 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176645 mm (DAC = 38588)
17-03-18 02:05:14.788 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:14.798 -07 000000462 INF: FPGA: Recv ZSGSRD 36791
17-03-18 02:05:14.798 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 02:05:14.798 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:14.798 -07 000000502 INF: FPGA: Recv ZSGSRD 36783
17-03-18 02:05:14.808 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:05:14.808 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:14.808 -07 000000512 INF: FPGA: Recv ZSGSRD 36792
17-03-18 02:05:14.818 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:14.818 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:14.818 -07 000000590 INF: FPGA: Recv ZSGSRD 36790
17-03-18 02:05:14.828 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:14.828 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:14.828 -07 000000585 INF: FPGA: Recv ZSGSRD 36791
17-03-18 02:05:14.838 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:14.838 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:14.838 -07 000000629 INF: FPGA: Recv ZSGSRD 36787
17-03-18 02:05:14.848 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:14.848 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:14.848 -07 000000447 INF: FPGA: Recv ZSGSRD 36784
17-03-18 02:05:14.858 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:14.868 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:14.868 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 4.012614,
17-03-18 02:05:14.868 -07 000000444 INF: FPGA: Recv ZSGSRD 36785
17-03-18 02:05:14.878 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:05:14.888 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:14.888 -07 000000611 INF: FPGA: Recv ZSGSRD 36787
17-03-18 02:05:14.898 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:05:14.918 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:14.918 -07 000000444 INF: FPGA: Recv ZSGSRD 36779
17-03-18 02:05:14.928 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:05:14.938 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:05:14.938 -07 000000629 INF: FPGA: Recv ZPIEZORD 33042
17-03-18 02:05:14.948 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:05:14.948 -07 000000437 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.888 V. Piezo Error = -8.3 V.
17-03-18 02:05:14.948 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.6 um, Read 10 ADC samples: Avg = 36787 (-175.8 uncal um), Error = 0.9 uncal um, Median = 36787 (-175.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36779 (-175.7 uncal um), Max = 36792 (-175.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:05:14.948 -07 000000437 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36787, posNoise = 5, negNoise = 8
17-03-18 02:05:14.948 -07 000000437 INF: Z Motor: After move to -0.176645, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:05:14.948 -07 000000437 INF: Z Motor: Settle wait time = 1452 ms, measure time = 153 ms (allowed 150 ms), total time = 1605 ms
17-03-18 02:05:14.948 -07 000000437 INF: Z Motor: Warning: Actual position measuring time = 153 ms, longer than max expected time of 150 ms
17-03-18 02:05:14.948 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 02:05:14.948 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:05:14.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:05:14.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:05:14.948 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:05:14.958 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:05:14.958 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:05:14.958 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:05:14.958 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:05:14.958 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:05:14.958 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:05:14.958 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:05:14.968 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:05:14.968 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:05:14.968 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:05:15.018 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:05:15.318 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:05:15.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:05:15.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:05:15.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 02:05:15.358 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:05:15.358 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 02:05:15.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 02:05:15.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:05:15.428 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:15.428 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:05:15.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:05:15.458 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:05:15.458 -07 000000444 INF: Autofocus start
17-03-18 02:05:15.458 -07 000000444 INF: MeasureProfile start
17-03-18 02:05:15.458 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:05:15.468 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:05:15.468 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:05:15.468 -07 000000444 INF: MeasureProfile done
17-03-18 02:05:15.468 -07 000000444 INF: X=112  Z correction [um]=0.5011052
17-03-18 02:05:15.468 -07 000000444 INF: Autofocus finished
17-03-18 02:05:15.668 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:05:15.668 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 02:05:15.668 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.176650844070095. ----------
17-03-18 02:05:15.678 -07 000000610 INF: Cycle	95	Tile	6	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:05:15.678 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37210, sync = True, waitForSettling = True)
17-03-18 02:05:15.678 -07 000000610 INF: Z Motor: Moving to -0.170336 mm, started at -0.176651 mm, distance = 6.31 um
17-03-18 02:05:15.678 -07 000000610 INF: FPGA: Xmit ZDACW 37210\n [Z Motor]
17-03-18 02:05:15.678 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:05:15.688 -07 000000610 INF: FPGA: 'ZDACW 37210' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:05:15.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:05:15.688 -07 000000585 INF: FPGA: Recv ZDACR 37210
17-03-18 02:05:15.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:15.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:05:15.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:15.848 -07 000000447 INF: FPGA: Recv ZSGSRD 35808
17-03-18 02:05:15.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:05:15.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:15.858 -07 000000447 INF: FPGA: Recv ZSGSRD 35806
17-03-18 02:05:15.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:15.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:15.868 -07 000000424 INF: FPGA: Recv ZSGSRD 35805
17-03-18 02:05:15.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:15.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:15.878 -07 000000424 INF: FPGA: Recv ZSGSRD 35803
17-03-18 02:05:15.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:15.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:15.888 -07 000000461 INF: FPGA: Recv ZSGSRD 35804
17-03-18 02:05:15.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:15.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:15.898 -07 000000461 INF: FPGA: Recv ZSGSRD 35813
17-03-18 02:05:15.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:15.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:15.908 -07 000000461 INF: FPGA: Recv ZSGSRD 35809
17-03-18 02:05:15.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:15.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:15.918 -07 000000444 INF: FPGA: Recv ZSGSRD 35804
17-03-18 02:05:15.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:15.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:15.928 -07 000000629 INF: FPGA: Recv ZSGSRD 35801
17-03-18 02:05:15.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:15.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:15.938 -07 000000461 INF: FPGA: Recv ZSGSRD 35805
17-03-18 02:05:15.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:15.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:05:15.948 -07 000000447 INF: FPGA: Recv ZPIEZORD 31699
17-03-18 02:05:15.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:15.958 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.678 V. Piezo Error = -9.1 V.
17-03-18 02:05:15.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35806 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35805 (-169.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35801 (-169.4 uncal um), Max = 35813 (-169.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:05:15.958 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35806, posNoise = 7, negNoise = 5
17-03-18 02:05:15.958 -07 000000610 INF: Z Motor: After move to -0.170336, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:05:15.958 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:05:15.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:05:15.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:05:15.958 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:05:15.958 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:05:15.958 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:05:15.958 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:05:15.958 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:05:15.958 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:05:15.958 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:05:15.958 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:05:15.958 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:05:15.958 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:05:15.958 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:05:15.958 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:05:15.968 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:05:15.968 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:05:15.978 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:05:15.978 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:05:15.978 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 02:05:15.978 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:05:15.978 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37387 150\n [Camera]
17-03-18 02:05:16.178 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:05:16.478 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:05:16.478 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:05:16.568 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:05:16.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:05:16.568 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:05:16.568 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:05:16.568 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 02:05:16.578 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:05:16.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:05:16.578 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:05:16.708 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:05:16.708 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 02:05:16.758 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37387 778
17-03-18 02:05:16.908 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:05:16.948 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 02:05:16.948 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:05:16.948 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:16.958 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:05:16.958 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:05:17.068 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 368 ms.
17-03-18 02:05:17.068 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-18 02:05:17.068 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:17.078 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:05:17.078 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 507 ms.
17-03-18 02:05:17.098 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:05:17.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:05:17.098 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:05:17.108 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:05:17.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:05:17.108 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:05:17.108 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:05:17.108 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-18 02:05:17.118 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:05:17.118 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:05:17.298 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:05:17.298 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:05:17.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37387 150' command took 2 ms to send, 1311 ms to get response, and 1317 ms overall
17-03-18 02:05:17.308 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:05:17.308 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.170348691959028. ------
17-03-18 02:05:17.318 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17683 mm
17-03-18 02:05:17.318 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:05:17.318 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:05:17.318 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 02:05:17.318 -07 000000502 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 02:05:17.318 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:05:17.318 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38628, sync = True, waitForSettling = False)
17-03-18 02:05:17.318 -07 000000461 INF: Z Motor: Moving to -0.176828 mm, started at -0.170349 mm, distance = -6.48 um
17-03-18 02:05:17.328 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 3 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:17.328 -07 000000461 INF: FPGA: Xmit ZDACW 38628\n [Z Motor]
17-03-18 02:05:17.328 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:05:17.338 -07 000000461 INF: FPGA: 'ZDACW 38628' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:05:17.338 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:05:17.338 -07 000000444 INF: FPGA: Recv ZDACR 38628
17-03-18 02:05:17.348 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:17.348 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:17.348 -07 000000461 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-18 02:05:17.348 -07 000000591 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:05:17.358 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:05:17.358 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 02:05:17.358 -07 000000502 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:17.358 -07 000000502 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:05:17.358 -07 000000502 INF: Y Motor: Moving 1337 steps-12
17-03-18 02:05:17.368 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:05:17.488 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:05:17.488 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 02:05:17.488 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:17.488 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 02:05:17.488 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 02:05:17.488 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:17.488 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:05:17.488 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:05:17.498 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:05:17.498 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:05:17.558 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:05:17.558 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 02:05:17.738 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 02:05:17.738 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:05:17.788 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:17.788 -07 000000629 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:05:17.798 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:05:17.798 -07 000000502 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:17.798 -07 000000502 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:05:17.798 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.835 mm, average velocity = 2.159 mm/sec
17-03-18 02:05:18.748 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:18.748 -07 000000591 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:05:18.758 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:05:18.758 -07 000000502 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:18.778 -07 000000502 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:05:18.778 -07 000000502 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:05:18.778 -07 000000502 INF: Y Motor: Moved to 64.8789 after 1461 ms (table move)
17-03-18 02:05:18.788 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176828 mm (DAC = 38628)
17-03-18 02:05:18.788 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:18.788 -07 000000444 INF: FPGA: Recv ZSGSRD 36810
17-03-18 02:05:18.798 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:05:18.798 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:18.798 -07 000000591 INF: FPGA: Recv ZSGSRD 36820
17-03-18 02:05:18.808 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:18.808 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:18.808 -07 000000447 INF: FPGA: Recv ZSGSRD 36827
17-03-18 02:05:18.818 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:18.818 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:18.818 -07 000000437 INF: FPGA: Recv ZSGSRD 36821
17-03-18 02:05:18.828 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:18.828 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:18.828 -07 000000502 INF: FPGA: Recv ZSGSRD 36817
17-03-18 02:05:18.838 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:18.838 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:18.838 -07 000000461 INF: FPGA: Recv ZSGSRD 36816
17-03-18 02:05:18.848 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:18.848 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:18.848 -07 000000447 INF: FPGA: Recv ZSGSRD 36815
17-03-18 02:05:18.858 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:18.858 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:18.858 -07 000000461 INF: FPGA: Recv ZSGSRD 36811
17-03-18 02:05:18.868 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:18.868 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:18.868 -07 000000629 INF: FPGA: Recv ZSGSRD 36815
17-03-18 02:05:18.878 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:18.878 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:18.878 -07 000000591 INF: FPGA: Recv ZSGSRD 36823
17-03-18 02:05:18.888 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:18.888 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:05:18.888 -07 000000502 INF: FPGA: Recv ZPIEZORD 33040
17-03-18 02:05:18.898 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:18.898 -07 000000585 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.894 V. Piezo Error = -8.4 V.
17-03-18 02:05:18.898 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.8 um, Read 10 ADC samples: Avg = 36818 (-176.0 uncal um), Error = 0.9 uncal um, Median = 36816 (-175.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36810 (-175.9 uncal um), Max = 36827 (-176.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:05:18.898 -07 000000585 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36818, posNoise = 9, negNoise = 8
17-03-18 02:05:18.898 -07 000000585 INF: Z Motor: After move to -0.176828, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:05:18.898 -07 000000585 INF: Z Motor: Settle wait time = 1463 ms, measure time = 109 ms (allowed 150 ms), total time = 1572 ms
17-03-18 02:05:18.898 -07 000000585 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:05:18.948 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1630 ms
17-03-18 02:05:18.948 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:05:18.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:05:18.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:05:18.948 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:05:18.948 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:05:18.958 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:05:18.958 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:05:18.958 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:05:18.958 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:05:18.958 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:05:18.958 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:05:18.968 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:05:18.968 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:05:18.968 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:05:19.008 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:05:19.308 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:05:19.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:05:19.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:05:19.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 02:05:19.348 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:05:19.348 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 02:05:19.348 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:05:19.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:05:19.428 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:19.428 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:05:19.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:05:19.448 -07 000000461 INF: Autofocus start
17-03-18 02:05:19.448 -07 000000461 INF: MeasureProfile start
17-03-18 02:05:19.448 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:05:19.448 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:05:19.458 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:05:19.458 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:05:19.458 -07 000000461 INF: MeasureProfile done
17-03-18 02:05:19.458 -07 000000461 INF: X=-32  Z correction [um]=-0.2344
17-03-18 02:05:19.458 -07 000000461 INF: Autofocus finished
17-03-18 02:05:19.658 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:05:19.658 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:05:19.658 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.17684999464649. ----------
17-03-18 02:05:19.658 -07 000000610 INF: Cycle	95	Tile	7	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:05:19.668 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37090, sync = True, waitForSettling = True)
17-03-18 02:05:19.668 -07 000000610 INF: Z Motor: Moving to -0.169787 mm, started at -0.176850 mm, distance = 7.06 um
17-03-18 02:05:19.668 -07 000000610 INF: FPGA: Xmit ZDACW 37090\n [Z Motor]
17-03-18 02:05:19.668 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 02:05:19.678 -07 000000610 INF: FPGA: 'ZDACW 37090' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:05:19.678 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:05:19.678 -07 000000447 INF: FPGA: Recv ZDACR 37090
17-03-18 02:05:19.688 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:19.688 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:05:19.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:19.838 -07 000000424 INF: FPGA: Recv ZSGSRD 35727
17-03-18 02:05:19.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:19.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:19.848 -07 000000444 INF: FPGA: Recv ZSGSRD 35719
17-03-18 02:05:19.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:19.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:19.858 -07 000000585 INF: FPGA: Recv ZSGSRD 35720
17-03-18 02:05:19.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:19.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:19.868 -07 000000447 INF: FPGA: Recv ZSGSRD 35722
17-03-18 02:05:19.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:19.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:19.878 -07 000000444 INF: FPGA: Recv ZSGSRD 35718
17-03-18 02:05:19.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:19.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:19.888 -07 000000591 INF: FPGA: Recv ZSGSRD 35719
17-03-18 02:05:19.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:19.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:19.898 -07 000000502 INF: FPGA: Recv ZSGSRD 35721
17-03-18 02:05:19.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:19.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:19.918 -07 000000437 INF: FPGA: Recv ZSGSRD 35724
17-03-18 02:05:19.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:05:19.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:19.928 -07 000000585 INF: FPGA: Recv ZSGSRD 35718
17-03-18 02:05:19.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:19.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:19.968 -07 000000585 INF: FPGA: Recv ZSGSRD 35717
17-03-18 02:05:19.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 02:05:19.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:05:19.988 -07 000000447 INF: FPGA: Recv ZPIEZORD 31589
17-03-18 02:05:19.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:05:19.998 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.660 V. Piezo Error = -9.1 V.
17-03-18 02:05:19.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35720 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35720 (-168.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35717 (-168.9 uncal um), Max = 35727 (-169.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:05:19.998 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35720, posNoise = 7, negNoise = 3
17-03-18 02:05:19.998 -07 000000610 INF: Z Motor: After move to -0.169787, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:05:19.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms)
17-03-18 02:05:19.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:05:19.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:05:19.998 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:05:19.998 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:05:19.998 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:05:19.998 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:05:19.998 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:05:19.998 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:05:19.998 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:05:19.998 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:05:19.998 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:05:19.998 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:05:19.998 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:05:20.008 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:05:20.008 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:05:20.008 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:05:20.018 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:05:20.018 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:05:20.018 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:05:20.018 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:05:20.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37266 150\n [Camera]
17-03-18 02:05:20.218 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:05:20.278 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 4.018051,
17-03-18 02:05:20.607 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:05:20.607 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:05:20.607 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:05:20.607 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:05:20.607 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:05:20.617 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:05:20.617 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:05:20.617 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:05:20.617 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:05:20.617 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 02:05:20.797 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37266 778
17-03-18 02:05:20.947 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:05:20.987 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 02:05:20.987 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 02:05:20.987 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:20.987 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:05:20.987 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:05:20.987 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:20.987 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:05:20.997 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:05:20.997 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:05:20.997 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:05:21.137 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:05:21.137 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:05:21.137 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:05:21.267 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:05:21.267 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:05:21.267 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:05:21.267 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:05:21.267 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:05:21.277 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:05:21.277 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start.
17-03-18 02:05:21.337 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:05:21.337 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:05:21.337 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37266 150' command took 2 ms to send, 1311 ms to get response, and 1316 ms overall
17-03-18 02:05:21.337 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:05:21.337 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.169796209714836. ------
17-03-18 02:05:21.337 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:05:21.337 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17642 mm
17-03-18 02:05:21.347 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:05:21.347 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:05:21.347 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 02:05:21.347 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:05:21.347 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 38538, sync = True, waitForSettling = False)
17-03-18 02:05:21.347 -07 000000629 INF: Z Motor: Moving to -0.176416 mm, started at -0.169796 mm, distance = -6.62 um
17-03-18 02:05:21.347 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 02:05:21.347 -07 000000447 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 02:05:21.357 -07 000000629 INF: FPGA: Xmit ZDACW 38538\n [Z Motor]
17-03-18 02:05:21.357 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 02:05:21.367 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:21.367 -07 000000629 INF: FPGA: 'ZDACW 38538' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:05:21.367 -07 000000502 INF: FPGA: Recv YRDPOS 132873
17-03-18 02:05:21.377 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:05:21.377 -07 000000447 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:21.377 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:05:21.377 -07 000000585 INF: FPGA: Recv ZDACR 38538
17-03-18 02:05:21.377 -07 000000447 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:05:21.387 -07 000000447 INF: Y Motor: Moving 1349 steps-28
17-03-18 02:05:21.387 -07 000000629 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:05:21.387 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:05:21.387 -07 000000629 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 02:05:21.477 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:05:21.477 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:05:21.547 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:05:21.547 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 02:05:21.647 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 02:05:21.647 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 02:05:21.647 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:21.647 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:05:21.647 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:05:21.647 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:21.657 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:05:21.657 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:05:21.657 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-18 02:05:21.657 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:05:21.757 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 02:05:21.757 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 02:05:21.807 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:21.817 -07 000000444 INF: FPGA: Recv YRDPOS 134583
17-03-18 02:05:21.817 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 02:05:21.817 -07 000000447 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:21.817 -07 000000447 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 02:05:21.817 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.844 mm, average velocity = 2.232 mm/sec
17-03-18 02:05:22.767 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:22.767 -07 000000629 INF: FPGA: Recv YRDPOS 134583
17-03-18 02:05:22.777 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:05:22.777 -07 000000447 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:22.807 -07 000000447 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:05:22.807 -07 000000447 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:05:22.817 -07 000000447 INF: Y Motor: Moved to 65.7144 after 1465 ms (table move)
17-03-18 02:05:22.817 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176416 mm (DAC = 38538)
17-03-18 02:05:22.817 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:22.817 -07 000000424 INF: FPGA: Recv ZSGSRD 36756
17-03-18 02:05:22.827 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:05:22.827 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:22.827 -07 000000585 INF: FPGA: Recv ZSGSRD 36743
17-03-18 02:05:22.837 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:22.837 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:22.837 -07 000000437 INF: FPGA: Recv ZSGSRD 36747
17-03-18 02:05:22.847 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:22.847 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:22.847 -07 000000629 INF: FPGA: Recv ZSGSRD 36751
17-03-18 02:05:22.857 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:22.857 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:22.857 -07 000000424 INF: FPGA: Recv ZSGSRD 36748
17-03-18 02:05:22.867 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:22.867 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:22.867 -07 000000585 INF: FPGA: Recv ZSGSRD 36749
17-03-18 02:05:22.877 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:22.877 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:22.877 -07 000000444 INF: FPGA: Recv ZSGSRD 36754
17-03-18 02:05:22.887 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:22.887 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:22.887 -07 000000447 INF: FPGA: Recv ZSGSRD 36754
17-03-18 02:05:22.897 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:22.897 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:22.897 -07 000000444 INF: FPGA: Recv ZSGSRD 36760
17-03-18 02:05:22.907 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:22.907 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:22.907 -07 000000585 INF: FPGA: Recv ZSGSRD 36750
17-03-18 02:05:22.917 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:22.917 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:05:22.917 -07 000000424 INF: FPGA: Recv ZPIEZORD 32980
17-03-18 02:05:22.927 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:22.927 -07 000000591 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.881 V. Piezo Error = -8.4 V.
17-03-18 02:05:22.927 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36751 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36750 (-175.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36743 (-175.5 uncal um), Max = 36760 (-175.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:05:22.927 -07 000000591 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36751, posNoise = 9, negNoise = 8
17-03-18 02:05:22.927 -07 000000591 INF: Z Motor: After move to -0.176416, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:05:22.927 -07 000000591 INF: Z Motor: Settle wait time = 1469 ms, measure time = 109 ms (allowed 150 ms), total time = 1578 ms
17-03-18 02:05:22.927 -07 000000591 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:05:22.977 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1630 ms
17-03-18 02:05:22.977 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:05:22.977 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:05:22.977 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:05:22.977 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:05:22.977 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:05:22.977 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:05:22.977 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:05:22.987 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:05:22.987 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:05:22.987 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:05:22.987 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:05:22.997 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:05:22.997 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:05:22.997 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:05:23.037 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:05:23.337 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:05:23.337 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:05:23.347 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:05:23.347 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-18 02:05:23.377 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:05:23.377 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 02:05:23.377 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 02:05:23.457 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:05:23.457 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:23.467 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:05:23.467 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:05:23.477 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:05:23.477 -07 000000447 INF: Autofocus start
17-03-18 02:05:23.477 -07 000000447 INF: MeasureProfile start
17-03-18 02:05:23.477 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:05:23.487 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:05:23.487 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:05:23.497 -07 000000447 INF: MeasureProfile done
17-03-18 02:05:23.497 -07 000000447 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:05:23.497 -07 000000447 INF: Autofocus finished
17-03-18 02:05:23.687 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:05:23.687 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:05:23.687 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.176419572432992. ----------
17-03-18 02:05:23.697 -07 000000610 INF: Cycle	95	Tile	8	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:05:23.697 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37035, sync = True, waitForSettling = True)
17-03-18 02:05:23.697 -07 000000610 INF: Z Motor: Moving to -0.169535 mm, started at -0.176420 mm, distance = 6.88 um
17-03-18 02:05:23.697 -07 000000610 INF: FPGA: Xmit ZDACW 37035\n [Z Motor]
17-03-18 02:05:23.697 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 02:05:23.707 -07 000000610 INF: FPGA: 'ZDACW 37035' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:05:23.707 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:05:23.707 -07 000000461 INF: FPGA: Recv ZDACR 37035
17-03-18 02:05:23.717 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:23.717 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:05:23.867 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:23.867 -07 000000424 INF: FPGA: Recv ZSGSRD 35679
17-03-18 02:05:23.877 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:05:23.877 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:23.877 -07 000000444 INF: FPGA: Recv ZSGSRD 35684
17-03-18 02:05:23.887 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:23.887 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:23.887 -07 000000591 INF: FPGA: Recv ZSGSRD 35674
17-03-18 02:05:23.897 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:23.897 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:23.897 -07 000000502 INF: FPGA: Recv ZSGSRD 35681
17-03-18 02:05:23.907 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:23.907 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:23.907 -07 000000512 INF: FPGA: Recv ZSGSRD 35686
17-03-18 02:05:23.917 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:23.917 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:23.917 -07 000000611 INF: FPGA: Recv ZSGSRD 35679
17-03-18 02:05:23.927 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:23.927 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:23.927 -07 000000585 INF: FPGA: Recv ZSGSRD 35686
17-03-18 02:05:23.937 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:23.937 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:23.937 -07 000000590 INF: FPGA: Recv ZSGSRD 35682
17-03-18 02:05:23.947 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:23.947 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:23.947 -07 000000512 INF: FPGA: Recv ZSGSRD 35681
17-03-18 02:05:23.957 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:23.957 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:23.957 -07 000000591 INF: FPGA: Recv ZSGSRD 35678
17-03-18 02:05:23.967 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:23.967 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:05:23.967 -07 000000502 INF: FPGA: Recv ZPIEZORD 31535
17-03-18 02:05:23.977 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:23.977 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.651 V. Piezo Error = -9.1 V.
17-03-18 02:05:23.977 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35681 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35681 (-168.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35674 (-168.6 uncal um), Max = 35686 (-168.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:05:23.977 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35681, posNoise = 5, negNoise = 7
17-03-18 02:05:23.977 -07 000000610 INF: Z Motor: After move to -0.169535, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:05:23.977 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 02:05:23.977 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:05:23.977 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:05:23.977 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:05:23.977 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:05:23.977 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:05:23.977 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:05:23.977 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:05:23.977 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:05:23.977 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:05:23.977 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:05:23.977 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:05:23.977 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:05:23.987 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:05:23.987 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:05:23.987 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:05:23.987 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:05:23.987 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:05:23.987 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:05:23.997 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:05:23.997 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:05:23.997 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37212 150\n [Camera]
17-03-18 02:05:24.197 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:05:24.587 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:05:24.587 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:05:24.597 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:05:24.597 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:05:24.597 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:05:24.597 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:05:24.597 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:05:24.597 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:05:24.597 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:05:24.597 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:05:24.777 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37212 778
17-03-18 02:05:24.927 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:05:24.967 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:05:24.967 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:05:24.967 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:24.967 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:05:24.967 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:05:24.977 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:24.977 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:05:24.977 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:05:24.977 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:05:24.987 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:05:25.117 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:05:25.117 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:05:25.117 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:05:25.237 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:05:25.237 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:05:25.237 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:05:25.237 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:05:25.237 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:05:25.247 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:05:25.247 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start.
17-03-18 02:05:25.317 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:05:25.317 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:05:25.317 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37212 150' command took 2 ms to send, 1310 ms to get response, and 1316 ms overall
17-03-18 02:05:25.317 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:05:25.317 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.169545665441308. ------
17-03-18 02:05:25.317 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17590 mm
17-03-18 02:05:25.317 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:05:25.327 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 02:05:25.327 -07 000000447 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-18 02:05:25.327 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 38425, sync = True, waitForSettling = False)
17-03-18 02:05:25.327 -07 000000585 INF: Z Motor: Moving to -0.175898 mm, started at -0.169546 mm, distance = -6.35 um
17-03-18 02:05:25.347 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:05:25.347 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:05:25.357 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:25.357 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 33 ms overall
17-03-18 02:05:25.357 -07 000000590 INF: FPGA: Recv YRDPOS 134583
17-03-18 02:05:25.367 -07 000000585 INF: FPGA: Xmit ZDACW 38425\n [Z Motor]
17-03-18 02:05:25.367 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 37 ms overall
17-03-18 02:05:25.367 -07 000000447 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:25.367 -07 000000447 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:05:25.367 -07 000000447 INF: Y Motor: Moving 1341 steps-17
17-03-18 02:05:25.367 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:05:25.377 -07 000000585 INF: FPGA: 'ZDACW 38425' command took 0 ms to send, 0 ms to get response, and 47 ms overall
17-03-18 02:05:25.387 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:05:25.397 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:05:25.407 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:05:25.407 -07 000000462 INF: FPGA: Recv ZDACR 38425
17-03-18 02:05:25.417 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 02:05:25.417 -07 000000585 INF: Z Motor: MoveAbsStepped took 87 ms (did NOT wait for settling yet))
17-03-18 02:05:25.587 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:05:25.587 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 231 ms overall
17-03-18 02:05:25.607 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 02:05:25.607 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 02:05:25.607 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:25.617 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:05:25.617 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:05:25.617 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:05:25.617 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:25.627 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:05:25.627 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:05:25.627 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 503 ms.
17-03-18 02:05:25.657 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 4.001704,
17-03-18 02:05:25.767 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:05:25.767 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 405 ms overall
17-03-18 02:05:25.827 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:25.827 -07 000000590 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:05:25.837 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:25.837 -07 000000447 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:25.837 -07 000000447 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:05:25.837 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 405 ms, distance = 0.838 mm, average velocity = 2.070 mm/sec
17-03-18 02:05:26.477 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:05:26.477 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:05:26.787 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:26.787 -07 000000608 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:05:26.797 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:26.797 -07 000000447 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:26.817 -07 000000447 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:05:26.827 -07 000000447 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:05:26.827 -07 000000447 INF: Y Motor: Moved to 66.5391 after 1498 ms (table move)
17-03-18 02:05:26.827 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175898 mm (DAC = 38425)
17-03-18 02:05:26.827 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:26.827 -07 000000467 INF: FPGA: Recv ZSGSRD 36678
17-03-18 02:05:26.837 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:05:26.837 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:26.837 -07 000000569 INF: FPGA: Recv ZSGSRD 36675
17-03-18 02:05:26.847 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:26.847 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:26.847 -07 000000561 INF: FPGA: Recv ZSGSRD 36667
17-03-18 02:05:26.857 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:26.857 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:26.857 -07 000000424 INF: FPGA: Recv ZSGSRD 36676
17-03-18 02:05:26.867 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:26.867 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:26.867 -07 000000502 INF: FPGA: Recv ZSGSRD 36673
17-03-18 02:05:26.877 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:26.877 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:26.877 -07 000000585 INF: FPGA: Recv ZSGSRD 36661
17-03-18 02:05:26.887 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:26.887 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:26.887 -07 000000561 INF: FPGA: Recv ZSGSRD 36670
17-03-18 02:05:26.897 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:26.897 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:26.897 -07 000000447 INF: FPGA: Recv ZSGSRD 36678
17-03-18 02:05:26.907 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:26.907 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:26.907 -07 000000561 INF: FPGA: Recv ZSGSRD 36673
17-03-18 02:05:26.917 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:26.917 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:26.917 -07 000000591 INF: FPGA: Recv ZSGSRD 36673
17-03-18 02:05:26.927 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:26.927 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:05:26.927 -07 000000629 INF: FPGA: Recv ZPIEZORD 32895
17-03-18 02:05:26.937 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:26.937 -07 000000444 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.863 V. Piezo Error = -8.4 V.
17-03-18 02:05:26.937 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36672 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36673 (-175.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36661 (-175.0 uncal um), Max = 36678 (-175.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 02:05:26.937 -07 000000444 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36672, posNoise = 6, negNoise = 11
17-03-18 02:05:26.937 -07 000000444 INF: Z Motor: After move to -0.175898, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:05:26.937 -07 000000444 INF: Z Motor: Settle wait time = 1500 ms, measure time = 109 ms (allowed 150 ms), total time = 1609 ms
17-03-18 02:05:26.937 -07 000000444 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:05:26.987 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1661 ms
17-03-18 02:05:26.987 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:05:26.987 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:05:26.987 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:05:26.987 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:05:26.987 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:05:26.987 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:05:26.987 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:05:26.987 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:05:26.987 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:05:26.997 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:05:26.997 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:05:26.997 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:05:26.997 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:05:27.007 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:05:27.047 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:05:27.347 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:05:27.347 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:05:27.347 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:05:27.357 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-18 02:05:27.387 -07 000000447 INF: FPGA: Recv @CAMSNAP 383
17-03-18 02:05:27.397 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 02:05:27.397 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 387 ms overall
17-03-18 02:05:27.467 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:05:27.467 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:27.467 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:05:27.467 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:05:27.497 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:05:27.497 -07 000000502 INF: Autofocus start
17-03-18 02:05:27.497 -07 000000502 INF: MeasureProfile start
17-03-18 02:05:27.497 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:05:27.507 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:05:27.507 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:05:27.517 -07 000000502 INF: MeasureProfile done
17-03-18 02:05:27.517 -07 000000502 INF: X=48  Z correction [um]=0.1739867
17-03-18 02:05:27.517 -07 000000502 INF: Autofocus finished
17-03-18 02:05:27.707 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:05:27.707 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 02:05:27.707 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.175912059673793. ----------
17-03-18 02:05:27.707 -07 000000610 INF: Cycle	95	Tile	9	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:05:27.717 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36975, sync = True, waitForSettling = True)
17-03-18 02:05:27.717 -07 000000610 INF: Z Motor: Moving to -0.169261 mm, started at -0.175912 mm, distance = 6.65 um
17-03-18 02:05:27.717 -07 000000610 INF: FPGA: Xmit ZDACW 36975\n [Z Motor]
17-03-18 02:05:27.717 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:05:27.727 -07 000000610 INF: FPGA: 'ZDACW 36975' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:05:27.727 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:05:27.727 -07 000000424 INF: FPGA: Recv ZDACR 36975
17-03-18 02:05:27.737 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:27.737 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:05:27.887 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:27.887 -07 000000629 INF: FPGA: Recv ZSGSRD 35636
17-03-18 02:05:27.897 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:05:27.897 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:27.897 -07 000000447 INF: FPGA: Recv ZSGSRD 35637
17-03-18 02:05:27.907 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:27.907 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:27.907 -07 000000502 INF: FPGA: Recv ZSGSRD 35642
17-03-18 02:05:27.917 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:27.917 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:27.917 -07 000000561 INF: FPGA: Recv ZSGSRD 35631
17-03-18 02:05:27.927 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:27.927 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:27.927 -07 000000512 INF: FPGA: Recv ZSGSRD 35641
17-03-18 02:05:27.937 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:27.937 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:27.937 -07 000000585 INF: FPGA: Recv ZSGSRD 35633
17-03-18 02:05:27.947 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:27.947 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:27.947 -07 000000561 INF: FPGA: Recv ZSGSRD 35645
17-03-18 02:05:27.957 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:27.957 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:27.957 -07 000000512 INF: FPGA: Recv ZSGSRD 35633
17-03-18 02:05:27.967 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:27.967 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:27.967 -07 000000444 INF: FPGA: Recv ZSGSRD 35643
17-03-18 02:05:27.977 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:27.977 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:27.977 -07 000000629 INF: FPGA: Recv ZSGSRD 35639
17-03-18 02:05:27.987 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:27.987 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:05:27.987 -07 000000512 INF: FPGA: Recv ZPIEZORD 31501
17-03-18 02:05:27.997 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:27.997 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.642 V. Piezo Error = -9.1 V.
17-03-18 02:05:27.997 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35638 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35638 (-168.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35631 (-168.4 uncal um), Max = 35645 (-168.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:05:27.997 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35638, posNoise = 7, negNoise = 7
17-03-18 02:05:27.997 -07 000000610 INF: Z Motor: After move to -0.169261, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:05:27.997 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:05:27.997 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:05:27.997 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:05:27.997 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:05:27.997 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:05:27.997 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:05:27.997 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:05:27.997 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:05:27.997 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:05:27.997 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:05:27.997 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:05:27.997 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:05:27.997 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:05:28.007 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:05:28.007 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:05:28.007 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:05:28.007 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:05:28.017 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 02:05:28.017 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:05:28.017 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 02:05:28.017 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:05:28.017 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37152 150\n [Camera]
17-03-18 02:05:28.217 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:05:28.617 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:05:28.617 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:05:28.617 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:05:28.617 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:05:28.617 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:05:28.617 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:05:28.617 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:05:28.617 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1144848144, 0x0, 391868352) start.
17-03-18 02:05:28.627 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:05:28.627 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:05:28.807 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37152 778
17-03-18 02:05:28.957 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:05:28.997 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1144848144, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 02:05:28.997 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 02:05:28.997 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:28.997 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 02:05:28.997 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 02:05:28.997 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:28.997 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:05:28.997 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:05:28.997 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:05:29.007 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:05:29.147 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:05:29.147 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:05:29.147 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:05:29.147 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:05:29.147 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:05:29.147 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:05:29.147 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:05:29.147 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:05:29.157 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:05:29.157 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:05:29.337 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:05:29.337 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:05:29.337 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37152 150' command took 2 ms to send, 1305 ms to get response, and 1316 ms overall
17-03-18 02:05:29.337 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:05:29.337 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.169269424319212. ------
17-03-18 02:05:29.467 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17606 mm
17-03-18 02:05:29.467 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:05:29.467 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:05:29.467 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 02:05:29.467 -07 000000561 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 02:05:29.467 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 38461, sync = True, waitForSettling = False)
17-03-18 02:05:29.467 -07 000000447 INF: Z Motor: Moving to -0.176063 mm, started at -0.169269 mm, distance = -6.79 um
17-03-18 02:05:29.467 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:05:29.477 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:05:29.477 -07 000000447 INF: FPGA: Xmit ZDACW 38461\n [Z Motor]
17-03-18 02:05:29.477 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:05:29.487 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:29.487 -07 000000447 INF: FPGA: 'ZDACW 38461' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:05:29.487 -07 000000512 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:05:29.497 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:05:29.497 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:05:29.497 -07 000000561 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:29.497 -07 000000561 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:05:29.497 -07 000000561 INF: Y Motor: Moving 1350 steps-28
17-03-18 02:05:29.507 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:05:29.507 -07 000000629 INF: FPGA: Recv ZDACR 38461
17-03-18 02:05:29.517 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:05:29.517 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:05:29.517 -07 000000447 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 02:05:29.537 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 02:05:29.537 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 02:05:29.537 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:29.537 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:05:29.547 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 02:05:29.547 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:05:29.547 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:29.547 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:05:29.557 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 10 ms.
17-03-18 02:05:29.557 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 02:05:29.697 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:05:29.697 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:05:29.897 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 02:05:29.897 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-18 02:05:29.937 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:29.947 -07 000000462 INF: FPGA: Recv YRDPOS 137978
17-03-18 02:05:29.947 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:05:29.947 -07 000000561 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:29.947 -07 000000561 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 02:05:29.947 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.844 mm, average velocity = 2.114 mm/sec
17-03-18 02:05:30.897 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:30.897 -07 000000447 INF: FPGA: Recv YRDPOS 137978
17-03-18 02:05:30.907 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:05:30.907 -07 000000561 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:30.927 -07 000000561 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:05:30.927 -07 000000561 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:05:30.927 -07 000000561 INF: Y Motor: Moved to 67.3721 after 1462 ms (table move)
17-03-18 02:05:30.937 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176063 mm (DAC = 38461)
17-03-18 02:05:30.937 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:30.937 -07 000000447 INF: FPGA: Recv ZSGSRD 36702
17-03-18 02:05:30.947 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:05:30.947 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:30.947 -07 000000447 INF: FPGA: Recv ZSGSRD 36697
17-03-18 02:05:30.957 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:30.957 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:30.957 -07 000000462 INF: FPGA: Recv ZSGSRD 36699
17-03-18 02:05:30.967 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:30.967 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:30.967 -07 000000447 INF: FPGA: Recv ZSGSRD 36697
17-03-18 02:05:30.977 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:30.977 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:30.977 -07 000000444 INF: FPGA: Recv ZSGSRD 36698
17-03-18 02:05:30.987 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:30.987 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:30.987 -07 000000444 INF: FPGA: Recv ZSGSRD 36696
17-03-18 02:05:30.997 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:30.997 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:30.997 -07 000000512 INF: FPGA: Recv ZSGSRD 36692
17-03-18 02:05:31.007 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:31.007 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:31.007 -07 000000444 INF: FPGA: Recv ZSGSRD 36691
17-03-18 02:05:31.017 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:31.017 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:31.017 -07 000000444 INF: FPGA: Recv ZSGSRD 36696
17-03-18 02:05:31.027 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:31.027 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:31.027 -07 000000444 INF: FPGA: Recv ZSGSRD 36699
17-03-18 02:05:31.037 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:31.037 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:05:31.037 -07 000000591 INF: FPGA: Recv ZPIEZORD 32943
17-03-18 02:05:31.047 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:31.047 -07 000000424 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.869 V. Piezo Error = -8.3 V.
17-03-18 02:05:31.047 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.1 um, Read 10 ADC samples: Avg = 36697 (-175.2 uncal um), Error = 0.9 uncal um, Median = 36697 (-175.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36691 (-175.1 uncal um), Max = 36702 (-175.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:05:31.047 -07 000000424 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36697, posNoise = 5, negNoise = 6
17-03-18 02:05:31.047 -07 000000424 INF: Z Motor: After move to -0.176063, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:05:31.047 -07 000000424 INF: Z Motor: Settle wait time = 1467 ms, measure time = 106 ms (allowed 150 ms), total time = 1573 ms
17-03-18 02:05:31.047 -07 000000424 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:05:31.067 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 3.975845,
17-03-18 02:05:31.097 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 02:05:31.097 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:05:31.097 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:05:31.097 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:05:31.097 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:05:31.097 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:05:31.107 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:05:31.107 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:05:31.107 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:05:31.107 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:05:31.107 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:05:31.107 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:05:31.117 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:05:31.117 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:05:31.117 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:05:31.157 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:05:31.457 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:05:31.457 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:05:31.457 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:05:31.467 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:05:31.477 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:05:31.497 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:05:31.497 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 02:05:31.497 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:05:31.576 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:05:31.576 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:31.576 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:05:31.576 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:05:31.576 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:05:31.596 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:05:31.596 -07 000000512 INF: Autofocus start
17-03-18 02:05:31.596 -07 000000512 INF: MeasureProfile start
17-03-18 02:05:31.596 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:05:31.606 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:05:31.606 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:05:31.606 -07 000000512 INF: MeasureProfile done
17-03-18 02:05:31.606 -07 000000512 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:05:31.606 -07 000000512 INF: Autofocus finished
17-03-18 02:05:31.806 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:05:31.806 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:05:31.806 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.176072664977337. ----------
17-03-18 02:05:31.806 -07 000000610 INF: Cycle	95	Tile	10	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:05:31.816 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36993, sync = True, waitForSettling = True)
17-03-18 02:05:31.816 -07 000000610 INF: Z Motor: Moving to -0.169343 mm, started at -0.176073 mm, distance = 6.73 um
17-03-18 02:05:31.816 -07 000000610 INF: FPGA: Xmit ZDACW 36993\n [Z Motor]
17-03-18 02:05:31.816 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 02:05:31.826 -07 000000610 INF: FPGA: 'ZDACW 36993' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:05:31.826 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:05:31.826 -07 000000629 INF: FPGA: Recv ZDACR 36993
17-03-18 02:05:31.836 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:31.836 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:05:31.986 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:31.986 -07 000000585 INF: FPGA: Recv ZSGSRD 35650
17-03-18 02:05:31.996 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:05:31.996 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:31.996 -07 000000462 INF: FPGA: Recv ZSGSRD 35648
17-03-18 02:05:32.006 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:32.006 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:32.006 -07 000000444 INF: FPGA: Recv ZSGSRD 35649
17-03-18 02:05:32.016 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:32.016 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:32.016 -07 000000462 INF: FPGA: Recv ZSGSRD 35650
17-03-18 02:05:32.026 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:32.026 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:32.026 -07 000000502 INF: FPGA: Recv ZSGSRD 35653
17-03-18 02:05:32.036 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:32.036 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:32.036 -07 000000502 INF: FPGA: Recv ZSGSRD 35653
17-03-18 02:05:32.046 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:32.046 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:32.046 -07 000000424 INF: FPGA: Recv ZSGSRD 35648
17-03-18 02:05:32.056 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:32.056 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:32.056 -07 000000437 INF: FPGA: Recv ZSGSRD 35651
17-03-18 02:05:32.066 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:32.066 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:32.066 -07 000000447 INF: FPGA: Recv ZSGSRD 35654
17-03-18 02:05:32.076 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:32.076 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:32.076 -07 000000447 INF: FPGA: Recv ZSGSRD 35654
17-03-18 02:05:32.086 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:32.086 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:05:32.086 -07 000000437 INF: FPGA: Recv ZPIEZORD 31556
17-03-18 02:05:32.096 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:32.096 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.645 V. Piezo Error = -9.0 V.
17-03-18 02:05:32.096 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35651 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35650 (-168.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35648 (-168.5 uncal um), Max = 35654 (-168.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:05:32.096 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35651, posNoise = 3, negNoise = 3
17-03-18 02:05:32.096 -07 000000610 INF: Z Motor: After move to -0.169343, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:05:32.096 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:05:32.096 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:05:32.096 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:05:32.096 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:05:32.096 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:05:32.096 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:05:32.096 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:05:32.096 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:05:32.096 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:05:32.096 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:05:32.096 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:05:32.096 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:05:32.096 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:05:32.106 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:05:32.106 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:05:32.106 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:05:32.106 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:05:32.116 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:05:32.116 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:05:32.116 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:05:32.116 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:05:32.116 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37170 150\n [Camera]
17-03-18 02:05:32.316 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:05:32.706 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:05:32.706 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:05:32.706 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:05:32.706 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:05:32.706 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:05:32.716 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:05:32.716 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:05:32.716 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:05:32.716 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:05:32.716 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-18 02:05:32.896 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37170 778
17-03-18 02:05:33.046 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:05:33.106 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 02:05:33.106 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:05:33.106 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:33.106 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 02:05:33.106 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:05:33.106 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:33.106 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:05:33.106 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:05:33.106 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:05:33.116 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 02:05:33.236 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:05:33.236 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:05:33.236 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:05:33.246 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:05:33.246 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:05:33.246 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:05:33.246 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:05:33.246 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:05:33.246 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:05:33.246 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:05:33.436 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:05:33.436 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:05:33.436 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37170 150' command took 2 ms to send, 1310 ms to get response, and 1317 ms overall
17-03-18 02:05:33.436 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:05:33.436 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.169352939077055. ------
17-03-18 02:05:33.436 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:05:33.436 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17562 mm
17-03-18 02:05:33.436 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:05:33.446 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:05:33.446 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:05:33.446 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:05:33.446 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 02:05:33.446 -07 000000591 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 02:05:33.446 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 38363, sync = True, waitForSettling = False)
17-03-18 02:05:33.446 -07 000000444 INF: Z Motor: Moving to -0.175615 mm, started at -0.169353 mm, distance = -6.26 um
17-03-18 02:05:33.456 -07 000000444 INF: FPGA: Xmit ZDACW 38363\n [Z Motor]
17-03-18 02:05:33.456 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:05:33.466 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:33.466 -07 000000444 INF: FPGA: 'ZDACW 38363' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:05:33.466 -07 000000585 INF: FPGA: Recv YRDPOS 137978
17-03-18 02:05:33.476 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:05:33.476 -07 000000591 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:33.476 -07 000000591 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:05:33.476 -07 000000591 INF: Y Motor: Moving 1345 steps-22
17-03-18 02:05:33.476 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:05:33.476 -07 000000585 INF: FPGA: Recv ZDACR 38363
17-03-18 02:05:33.486 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:05:33.486 -07 000000444 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-18 02:05:33.486 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:05:33.616 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:05:33.616 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:05:33.616 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:33.626 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:05:33.626 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:05:33.626 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:05:33.626 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:33.626 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:05:33.626 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:05:33.636 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:05:33.646 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:05:33.646 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 02:05:33.856 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 02:05:33.856 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:05:33.906 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:33.916 -07 000000585 INF: FPGA: Recv YRDPOS 139685
17-03-18 02:05:33.916 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:05:33.916 -07 000000591 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:33.916 -07 000000591 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 02:05:33.916 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.841 mm, average velocity = 2.166 mm/sec
17-03-18 02:05:34.866 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:34.866 -07 000000462 INF: FPGA: Recv YRDPOS 139685
17-03-18 02:05:34.876 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:05:34.876 -07 000000591 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:34.896 -07 000000591 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:05:34.896 -07 000000591 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:05:34.896 -07 000000591 INF: Y Motor: Moved to 68.2056 after 1453 ms (table move)
17-03-18 02:05:34.906 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175615 mm (DAC = 38363)
17-03-18 02:05:34.906 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:34.906 -07 000000447 INF: FPGA: Recv ZSGSRD 36625
17-03-18 02:05:34.916 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:05:34.916 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:34.916 -07 000000585 INF: FPGA: Recv ZSGSRD 36634
17-03-18 02:05:34.926 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:34.926 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:34.926 -07 000000502 INF: FPGA: Recv ZSGSRD 36629
17-03-18 02:05:34.936 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:34.936 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:34.936 -07 000000591 INF: FPGA: Recv ZSGSRD 36625
17-03-18 02:05:34.946 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:34.946 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:34.946 -07 000000462 INF: FPGA: Recv ZSGSRD 36632
17-03-18 02:05:34.956 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:34.956 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:34.956 -07 000000591 INF: FPGA: Recv ZSGSRD 36626
17-03-18 02:05:34.966 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:34.966 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:34.966 -07 000000561 INF: FPGA: Recv ZSGSRD 36624
17-03-18 02:05:34.976 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:34.976 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:34.976 -07 000000447 INF: FPGA: Recv ZSGSRD 36629
17-03-18 02:05:34.986 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:34.986 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:34.986 -07 000000444 INF: FPGA: Recv ZSGSRD 36625
17-03-18 02:05:34.996 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:34.996 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:34.996 -07 000000591 INF: FPGA: Recv ZSGSRD 36637
17-03-18 02:05:35.006 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:35.006 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:05:35.006 -07 000000424 INF: FPGA: Recv ZPIEZORD 32830
17-03-18 02:05:35.016 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:35.016 -07 000000437 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.854 V. Piezo Error = -8.4 V.
17-03-18 02:05:35.016 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.6 um, Read 10 ADC samples: Avg = 36629 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36628 (-174.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36624 (-174.7 uncal um), Max = 36637 (-174.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:05:35.016 -07 000000437 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36629, posNoise = 8, negNoise = 5
17-03-18 02:05:35.016 -07 000000437 INF: Z Motor: After move to -0.175615, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:05:35.016 -07 000000437 INF: Z Motor: Settle wait time = 1457 ms, measure time = 108 ms (allowed 150 ms), total time = 1565 ms
17-03-18 02:05:35.016 -07 000000437 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:05:35.066 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 02:05:35.066 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:05:35.066 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:05:35.066 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:05:35.066 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:05:35.066 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:05:35.066 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:05:35.066 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:05:35.066 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:05:35.066 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:05:35.076 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:05:35.076 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:05:35.076 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:05:35.076 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:05:35.086 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:05:35.136 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-18 02:05:35.436 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 02:05:35.436 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 02:05:35.436 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:05:35.436 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-18 02:05:35.466 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:05:35.466 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 02:05:35.466 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:05:35.546 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:05:35.546 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:35.546 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:05:35.546 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:05:35.566 -07 000000424 INF: Autofocus start
17-03-18 02:05:35.566 -07 000000424 INF: MeasureProfile start
17-03-18 02:05:35.566 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:05:35.566 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:05:35.576 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:05:35.576 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:05:35.576 -07 000000424 INF: MeasureProfile done
17-03-18 02:05:35.576 -07 000000424 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:05:35.576 -07 000000424 INF: Autofocus finished
17-03-18 02:05:35.776 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:05:35.776 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:05:35.776 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.175635818551697. ----------
17-03-18 02:05:35.786 -07 000000610 INF: Cycle	95	Tile	11	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:05:35.786 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36860, sync = True, waitForSettling = True)
17-03-18 02:05:35.786 -07 000000610 INF: Z Motor: Moving to -0.168734 mm, started at -0.175636 mm, distance = 6.90 um
17-03-18 02:05:35.786 -07 000000610 INF: FPGA: Xmit ZDACW 36860\n [Z Motor]
17-03-18 02:05:35.786 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:05:35.796 -07 000000610 INF: FPGA: 'ZDACW 36860' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:05:35.806 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:05:35.806 -07 000000444 INF: FPGA: Recv ZDACR 36860
17-03-18 02:05:35.816 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:05:35.816 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:05:35.966 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:35.966 -07 000000462 INF: FPGA: Recv ZSGSRD 35555
17-03-18 02:05:35.976 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:05:35.976 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:35.976 -07 000000462 INF: FPGA: Recv ZSGSRD 35563
17-03-18 02:05:35.986 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:35.986 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:35.986 -07 000000462 INF: FPGA: Recv ZSGSRD 35554
17-03-18 02:05:35.996 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:35.996 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:35.996 -07 000000462 INF: FPGA: Recv ZSGSRD 35555
17-03-18 02:05:36.006 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:36.006 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:36.006 -07 000000462 INF: FPGA: Recv ZSGSRD 35556
17-03-18 02:05:36.016 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:36.016 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:36.016 -07 000000502 INF: FPGA: Recv ZSGSRD 35556
17-03-18 02:05:36.026 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:36.026 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:36.026 -07 000000462 INF: FPGA: Recv ZSGSRD 35563
17-03-18 02:05:36.036 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:36.036 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:36.036 -07 000000611 INF: FPGA: Recv ZSGSRD 35551
17-03-18 02:05:36.046 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:36.046 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:36.046 -07 000000502 INF: FPGA: Recv ZSGSRD 35556
17-03-18 02:05:36.056 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:36.056 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:36.056 -07 000000502 INF: FPGA: Recv ZSGSRD 35560
17-03-18 02:05:36.066 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:36.066 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:05:36.066 -07 000000447 INF: FPGA: Recv ZPIEZORD 31418
17-03-18 02:05:36.076 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:36.076 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.624 V. Piezo Error = -9.1 V.
17-03-18 02:05:36.076 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35557 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35556 (-167.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35551 (-167.8 uncal um), Max = 35563 (-167.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:05:36.076 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35557, posNoise = 6, negNoise = 6
17-03-18 02:05:36.076 -07 000000610 INF: Z Motor: After move to -0.168734, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:05:36.076 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-18 02:05:36.076 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:05:36.076 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:05:36.076 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:05:36.076 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:05:36.076 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:05:36.076 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:05:36.076 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:05:36.076 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:05:36.076 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:05:36.076 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:05:36.076 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:05:36.076 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:05:36.086 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:05:36.086 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:05:36.086 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:05:36.086 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:05:36.096 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:05:36.096 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:05:36.096 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:05:36.096 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:05:36.096 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37037 150\n [Camera]
17-03-18 02:05:36.296 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:05:36.436 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 4.004458,
17-03-18 02:05:36.476 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:05:36.476 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:05:36.686 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:05:36.686 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:05:36.686 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:05:36.686 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:05:36.686 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:05:36.696 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:05:36.696 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:05:36.696 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:05:36.696 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:05:36.696 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:05:36.876 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37037 778
17-03-18 02:05:37.036 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:05:37.066 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 02:05:37.066 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:05:37.066 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:37.076 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 02:05:37.076 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 02:05:37.076 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:37.076 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:05:37.076 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:05:37.076 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:05:37.086 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:05:37.216 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:05:37.216 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:05:37.226 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:05:37.226 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:05:37.226 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:05:37.226 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:05:37.226 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:05:37.226 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:05:37.226 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:05:37.226 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:05:37.416 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:05:37.416 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:05:37.416 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37037 150' command took 2 ms to send, 1310 ms to get response, and 1316 ms overall
17-03-18 02:05:37.416 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:05:37.416 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.168749063135729. ------
17-03-18 02:05:37.416 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:05:37.416 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17543 mm
17-03-18 02:05:37.416 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:05:37.416 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 02:05:37.416 -07 000000444 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-18 02:05:37.416 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 38322, sync = True, waitForSettling = False)
17-03-18 02:05:37.416 -07 000000611 INF: Z Motor: Moving to -0.175427 mm, started at -0.168749 mm, distance = -6.68 um
17-03-18 02:05:37.416 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:05:37.426 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:05:37.426 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:37.426 -07 000000424 INF: FPGA: Recv YRDPOS 139685
17-03-18 02:05:37.436 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:05:37.436 -07 000000444 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:37.436 -07 000000444 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:05:37.436 -07 000000444 INF: Y Motor: Moving 1339 steps-14
17-03-18 02:05:37.436 -07 000000611 INF: FPGA: Xmit ZDACW 38322\n [Z Motor]
17-03-18 02:05:37.546 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:05:37.546 -07 000000611 INF: FPGA: 'ZDACW 38322' command took 1 ms to send, 0 ms to get response, and 130 ms overall
17-03-18 02:05:37.546 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:05:37.556 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:05:37.566 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:05:37.566 -07 000000424 INF: FPGA: Recv ZDACR 38322
17-03-18 02:05:37.576 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 02:05:37.576 -07 000000611 INF: Z Motor: MoveAbsStepped took 151 ms (did NOT wait for settling yet))
17-03-18 02:05:37.606 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 02:05:37.606 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 02:05:37.606 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:37.606 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:05:37.606 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:05:37.606 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:37.606 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:05:37.616 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:05:37.616 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:05:37.616 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:05:37.756 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:05:37.756 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 201 ms to get response, and 331 ms overall
17-03-18 02:05:37.936 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 02:05:37.936 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 499 ms overall
17-03-18 02:05:37.976 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:37.986 -07 000000424 INF: FPGA: Recv YRDPOS 141368
17-03-18 02:05:37.986 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 02:05:37.986 -07 000000444 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:37.986 -07 000000444 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 02:05:37.986 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 499 ms, distance = 0.837 mm, average velocity = 1.677 mm/sec
17-03-18 02:05:38.936 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:38.936 -07 000000437 INF: FPGA: Recv YRDPOS 141368
17-03-18 02:05:38.946 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:05:38.946 -07 000000444 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:38.966 -07 000000444 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:05:38.966 -07 000000444 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:05:38.966 -07 000000444 INF: Y Motor: Moved to 69.0273 after 1551 ms (table move)
17-03-18 02:05:38.976 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175427 mm (DAC = 38322)
17-03-18 02:05:38.976 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:38.976 -07 000000561 INF: FPGA: Recv ZSGSRD 36605
17-03-18 02:05:38.986 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:05:38.986 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:38.986 -07 000000611 INF: FPGA: Recv ZSGSRD 36599
17-03-18 02:05:38.996 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:38.996 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:38.996 -07 000000424 INF: FPGA: Recv ZSGSRD 36595
17-03-18 02:05:39.006 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:39.006 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:39.006 -07 000000444 INF: FPGA: Recv ZSGSRD 36598
17-03-18 02:05:39.016 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:39.016 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:39.016 -07 000000447 INF: FPGA: Recv ZSGSRD 36603
17-03-18 02:05:39.026 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:39.026 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:39.026 -07 000000611 INF: FPGA: Recv ZSGSRD 36591
17-03-18 02:05:39.036 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:39.036 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:39.036 -07 000000561 INF: FPGA: Recv ZSGSRD 36594
17-03-18 02:05:39.046 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:39.046 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:39.046 -07 000000444 INF: FPGA: Recv ZSGSRD 36597
17-03-18 02:05:39.056 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:39.056 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:39.056 -07 000000447 INF: FPGA: Recv ZSGSRD 36599
17-03-18 02:05:39.066 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:39.066 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:39.066 -07 000000424 INF: FPGA: Recv ZSGSRD 36601
17-03-18 02:05:39.076 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:39.076 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:05:39.076 -07 000000447 INF: FPGA: Recv ZPIEZORD 32744
17-03-18 02:05:39.086 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:39.086 -07 000000585 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.848 V. Piezo Error = -8.5 V.
17-03-18 02:05:39.086 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36598 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36598 (-174.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36591 (-174.5 uncal um), Max = 36605 (-174.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:05:39.086 -07 000000585 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36598, posNoise = 7, negNoise = 7
17-03-18 02:05:39.086 -07 000000585 INF: Z Motor: After move to -0.175427, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:05:39.086 -07 000000585 INF: Z Motor: Settle wait time = 1556 ms, measure time = 106 ms (allowed 150 ms), total time = 1662 ms
17-03-18 02:05:39.086 -07 000000585 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:05:39.136 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1714 ms
17-03-18 02:05:39.136 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:05:39.136 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:05:39.136 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:05:39.136 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:05:39.136 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:05:39.136 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:05:39.136 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:05:39.136 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:05:39.136 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:05:39.146 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:05:39.146 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:05:39.146 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:05:39.146 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:05:39.156 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:05:39.196 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:05:39.496 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:05:39.496 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:05:39.496 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:05:39.496 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:05:39.536 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:05:39.536 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 02:05:39.536 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:05:39.616 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:05:39.616 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:39.616 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:05:39.616 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:05:39.636 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:05:39.636 -07 000000502 INF: Autofocus start
17-03-18 02:05:39.636 -07 000000502 INF: MeasureProfile start
17-03-18 02:05:39.636 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:05:39.646 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:05:39.646 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:05:39.646 -07 000000502 INF: MeasureProfile done
17-03-18 02:05:39.646 -07 000000502 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 02:05:39.646 -07 000000502 INF: Autofocus finished
17-03-18 02:05:39.846 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:05:39.846 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:05:39.856 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.175436667975302. ----------
17-03-18 02:05:39.856 -07 000000610 INF: Cycle	95	Tile	12	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:05:39.856 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36802, sync = True, waitForSettling = True)
17-03-18 02:05:39.856 -07 000000610 INF: Z Motor: Moving to -0.168469 mm, started at -0.175437 mm, distance = 6.97 um
17-03-18 02:05:39.856 -07 000000610 INF: FPGA: Xmit ZDACW 36802\n [Z Motor]
17-03-18 02:05:39.856 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 02:05:39.866 -07 000000610 INF: FPGA: 'ZDACW 36802' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:05:39.866 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:05:39.866 -07 000000611 INF: FPGA: Recv ZDACR 36802
17-03-18 02:05:39.876 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:39.876 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:05:40.026 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:40.026 -07 000000502 INF: FPGA: Recv ZSGSRD 35515
17-03-18 02:05:40.036 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:05:40.036 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:40.036 -07 000000447 INF: FPGA: Recv ZSGSRD 35516
17-03-18 02:05:40.046 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:40.046 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:40.046 -07 000000561 INF: FPGA: Recv ZSGSRD 35515
17-03-18 02:05:40.056 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:40.056 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:40.056 -07 000000444 INF: FPGA: Recv ZSGSRD 35514
17-03-18 02:05:40.066 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:40.066 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:40.066 -07 000000424 INF: FPGA: Recv ZSGSRD 35516
17-03-18 02:05:40.076 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:40.076 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:40.076 -07 000000437 INF: FPGA: Recv ZSGSRD 35519
17-03-18 02:05:40.086 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:40.086 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:40.086 -07 000000424 INF: FPGA: Recv ZSGSRD 35519
17-03-18 02:05:40.096 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:40.096 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:40.096 -07 000000611 INF: FPGA: Recv ZSGSRD 35514
17-03-18 02:05:40.106 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:40.106 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:40.106 -07 000000561 INF: FPGA: Recv ZSGSRD 35514
17-03-18 02:05:40.116 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:40.116 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:40.116 -07 000000444 INF: FPGA: Recv ZSGSRD 35519
17-03-18 02:05:40.126 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:40.126 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:05:40.126 -07 000000561 INF: FPGA: Recv ZPIEZORD 31326
17-03-18 02:05:40.136 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:40.136 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.616 V. Piezo Error = -9.2 V.
17-03-18 02:05:40.136 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35516 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35516 (-167.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35514 (-167.6 uncal um), Max = 35519 (-167.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 02:05:40.136 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35516, posNoise = 3, negNoise = 2
17-03-18 02:05:40.136 -07 000000610 INF: Z Motor: After move to -0.168469, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:05:40.136 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 02:05:40.136 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:05:40.136 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:05:40.136 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:05:40.136 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:05:40.136 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:05:40.136 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:05:40.136 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:05:40.136 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:05:40.136 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:05:40.136 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:05:40.136 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:05:40.136 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:05:40.146 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:05:40.146 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:05:40.146 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:05:40.146 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:05:40.156 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:05:40.156 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:05:40.156 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:05:40.156 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:05:40.156 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36979 150\n [Camera]
17-03-18 02:05:40.356 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:05:40.746 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:05:40.746 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:05:40.746 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:05:40.746 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:05:40.756 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:05:40.756 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:05:40.756 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:05:40.756 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-18 02:05:40.756 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:05:40.756 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:05:40.936 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36979 778
17-03-18 02:05:41.086 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:05:41.126 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 02:05:41.126 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 02:05:41.126 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:41.126 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 368 ms.
17-03-18 02:05:41.126 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-18 02:05:41.126 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:41.136 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:05:41.136 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:05:41.136 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:05:41.136 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:05:41.276 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:05:41.276 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:05:41.276 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:05:41.286 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:05:41.286 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:05:41.286 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:05:41.296 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:05:41.296 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:05:41.296 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:05:41.296 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:05:41.466 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:05:41.476 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:05:41.476 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36979 150' command took 2 ms to send, 1310 ms to get response, and 1316 ms overall
17-03-18 02:05:41.476 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:05:41.476 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.168485670437917. ------
17-03-18 02:05:41.476 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:05:41.476 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:05:41.476 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17491 mm
17-03-18 02:05:41.616 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:05:41.616 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:05:41.616 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:05:41.616 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 02:05:41.616 -07 000000437 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 02:05:41.616 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38208, sync = True, waitForSettling = False)
17-03-18 02:05:41.616 -07 000000502 INF: Z Motor: Moving to -0.174905 mm, started at -0.168486 mm, distance = -6.42 um
17-03-18 02:05:41.626 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 141 ms overall
17-03-18 02:05:41.646 -07 000000502 INF: FPGA: Xmit ZDACW 38208\n [Z Motor]
17-03-18 02:05:41.646 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:05:41.656 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:41.656 -07 000000502 INF: FPGA: 'ZDACW 38208' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 02:05:41.656 -07 000000455 INF: FPGA: Recv YRDPOS 141369
17-03-18 02:05:41.666 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:05:41.666 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 42 ms overall
17-03-18 02:05:41.666 -07 000000437 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:41.666 -07 000000437 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:05:41.666 -07 000000437 INF: Y Motor: Moving 1352 steps-31
17-03-18 02:05:41.676 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 02:05:41.676 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:05:41.676 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:41.676 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:05:41.686 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:05:41.686 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 02:05:41.686 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:05:41.686 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:41.686 -07 000000461 INF: FPGA: Recv ZDACR 38208
17-03-18 02:05:41.686 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:05:41.686 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:05:41.686 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:05:41.696 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:05:41.696 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 02:05:41.696 -07 000000502 INF: Z Motor: MoveAbsStepped took 73 ms (did NOT wait for settling yet))
17-03-18 02:05:41.866 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:05:41.866 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 242 ms overall
17-03-18 02:05:41.946 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 3.996267,
17-03-18 02:05:42.066 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 02:05:42.066 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 403 ms overall
17-03-18 02:05:42.116 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:42.116 -07 000000579 INF: FPGA: Recv YRDPOS 143080
17-03-18 02:05:42.126 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:05:42.126 -07 000000437 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:42.126 -07 000000437 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:05:42.126 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 404 ms, distance = 0.845 mm, average velocity = 2.092 mm/sec
17-03-18 02:05:43.075 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:43.075 -07 000000502 INF: FPGA: Recv YRDPOS 143080
17-03-18 02:05:43.085 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:43.085 -07 000000437 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:43.105 -07 000000437 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:05:43.105 -07 000000437 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:05:43.105 -07 000000437 INF: Y Motor: Moved to 69.8633 after 1492 ms (table move)
17-03-18 02:05:43.115 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174905 mm (DAC = 38208)
17-03-18 02:05:43.115 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:43.115 -07 000000424 INF: FPGA: Recv ZSGSRD 36515
17-03-18 02:05:43.125 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:05:43.125 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:43.125 -07 000000455 INF: FPGA: Recv ZSGSRD 36515
17-03-18 02:05:43.135 -07 000000444 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:43.135 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:43.135 -07 000000447 INF: FPGA: Recv ZSGSRD 36521
17-03-18 02:05:43.145 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:43.145 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:43.145 -07 000000561 INF: FPGA: Recv ZSGSRD 36514
17-03-18 02:05:43.155 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:43.155 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:43.155 -07 000000424 INF: FPGA: Recv ZSGSRD 36512
17-03-18 02:05:43.165 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:43.165 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:43.165 -07 000000502 INF: FPGA: Recv ZSGSRD 36514
17-03-18 02:05:43.175 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:43.175 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:43.175 -07 000000569 INF: FPGA: Recv ZSGSRD 36510
17-03-18 02:05:43.185 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:43.185 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:43.185 -07 000000424 INF: FPGA: Recv ZSGSRD 36517
17-03-18 02:05:43.195 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:43.195 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:43.195 -07 000000579 INF: FPGA: Recv ZSGSRD 36512
17-03-18 02:05:43.205 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:43.205 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:43.205 -07 000000461 INF: FPGA: Recv ZSGSRD 36520
17-03-18 02:05:43.215 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:43.215 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:05:43.215 -07 000000579 INF: FPGA: Recv ZPIEZORD 32706
17-03-18 02:05:43.225 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:43.225 -07 000000444 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.830 V. Piezo Error = -8.4 V.
17-03-18 02:05:43.225 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36515 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36514 (-174.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36510 (-174.0 uncal um), Max = 36521 (-174.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:05:43.225 -07 000000444 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36515, posNoise = 6, negNoise = 5
17-03-18 02:05:43.225 -07 000000444 INF: Z Motor: After move to -0.174905, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:05:43.225 -07 000000444 INF: Z Motor: Settle wait time = 1495 ms, measure time = 108 ms (allowed 150 ms), total time = 1603 ms
17-03-18 02:05:43.225 -07 000000444 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:05:43.275 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1791 ms
17-03-18 02:05:43.275 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:05:43.275 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:05:43.275 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:05:43.275 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:05:43.275 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:05:43.275 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:05:43.275 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:05:43.285 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:05:43.285 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:05:43.285 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:05:43.285 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:05:43.295 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:05:43.295 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:05:43.295 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:05:43.345 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:05:43.635 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:05:43.645 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:05:43.645 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:05:43.645 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:05:43.675 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:05:43.685 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 02:05:43.685 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:05:43.755 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:05:43.755 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:43.755 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:05:43.755 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:05:43.785 -07 000000437 INF: Autofocus start
17-03-18 02:05:43.785 -07 000000437 INF: MeasureProfile start
17-03-18 02:05:43.785 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:05:43.785 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:05:43.795 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:05:43.795 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:05:43.795 -07 000000437 INF: MeasureProfile done
17-03-18 02:05:43.795 -07 000000437 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:05:43.795 -07 000000437 INF: Autofocus finished
17-03-18 02:05:43.995 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:05:43.995 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 02:05:43.995 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.174903458367536. ----------
17-03-18 02:05:44.005 -07 000000610 INF: Cycle	95	Tile	13	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:05:44.005 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36705, sync = True, waitForSettling = True)
17-03-18 02:05:44.005 -07 000000610 INF: Z Motor: Moving to -0.168025 mm, started at -0.174903 mm, distance = 6.88 um
17-03-18 02:05:44.005 -07 000000610 INF: FPGA: Xmit ZDACW 36705\n [Z Motor]
17-03-18 02:05:44.005 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 02:05:44.015 -07 000000610 INF: FPGA: 'ZDACW 36705' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:05:44.015 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:05:44.015 -07 000000424 INF: FPGA: Recv ZDACR 36705
17-03-18 02:05:44.025 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:44.025 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:05:44.175 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:44.175 -07 000000502 INF: FPGA: Recv ZSGSRD 35445
17-03-18 02:05:44.185 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:05:44.185 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:44.185 -07 000000461 INF: FPGA: Recv ZSGSRD 35449
17-03-18 02:05:44.195 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:44.195 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:44.195 -07 000000579 INF: FPGA: Recv ZSGSRD 35442
17-03-18 02:05:44.205 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:44.205 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:44.205 -07 000000579 INF: FPGA: Recv ZSGSRD 35437
17-03-18 02:05:44.215 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:44.215 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:44.215 -07 000000569 INF: FPGA: Recv ZSGSRD 35447
17-03-18 02:05:44.225 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:44.225 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:44.225 -07 000000579 INF: FPGA: Recv ZSGSRD 35446
17-03-18 02:05:44.235 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:44.235 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:44.235 -07 000000502 INF: FPGA: Recv ZSGSRD 35453
17-03-18 02:05:44.245 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:44.245 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:44.245 -07 000000444 INF: FPGA: Recv ZSGSRD 35450
17-03-18 02:05:44.255 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:44.255 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:44.255 -07 000000569 INF: FPGA: Recv ZSGSRD 35444
17-03-18 02:05:44.265 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:44.265 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:44.265 -07 000000569 INF: FPGA: Recv ZSGSRD 35450
17-03-18 02:05:44.275 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:44.275 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:05:44.275 -07 000000424 INF: FPGA: Recv ZPIEZORD 31264
17-03-18 02:05:44.285 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:44.285 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.601 V. Piezo Error = -9.2 V.
17-03-18 02:05:44.285 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35446 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35446 (-167.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35437 (-167.1 uncal um), Max = 35453 (-167.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:05:44.285 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35446, posNoise = 7, negNoise = 9
17-03-18 02:05:44.285 -07 000000610 INF: Z Motor: After move to -0.168025, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:05:44.285 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:05:44.285 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:05:44.285 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:05:44.285 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:05:44.285 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:05:44.285 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:05:44.285 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:05:44.285 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:05:44.285 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:05:44.285 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:05:44.285 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:05:44.285 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:05:44.285 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:05:44.295 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:05:44.295 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:05:44.295 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:05:44.295 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:05:44.295 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:05:44.295 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 02:05:44.305 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:05:44.305 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 02:05:44.305 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36882 150\n [Camera]
17-03-18 02:05:44.505 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:05:44.895 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:05:44.895 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:05:44.895 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:05:44.895 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:05:44.895 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:05:44.905 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:05:44.905 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:05:44.905 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-18 02:05:44.905 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:05:44.905 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:05:45.085 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36882 778
17-03-18 02:05:45.235 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:05:45.275 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 02:05:45.275 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 02:05:45.275 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:45.275 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 02:05:45.275 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 02:05:45.275 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:45.285 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:05:45.285 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:05:45.285 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:05:45.295 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:05:45.425 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:05:45.425 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:05:45.425 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:05:45.435 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:05:45.435 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:05:45.435 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:05:45.435 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:05:45.435 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:05:45.435 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:05:45.435 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 02:05:45.615 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:05:45.615 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:05:45.615 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36882 150' command took 2 ms to send, 1309 ms to get response, and 1316 ms overall
17-03-18 02:05:45.625 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:05:45.625 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.168035975587994. ------
17-03-18 02:05:45.625 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:05:45.625 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17447 mm
17-03-18 02:05:45.625 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:05:45.625 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:05:45.625 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 02:05:45.625 -07 000000437 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-18 02:05:45.625 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38113, sync = True, waitForSettling = False)
17-03-18 02:05:45.625 -07 000000424 INF: Z Motor: Moving to -0.174470 mm, started at -0.168036 mm, distance = -6.43 um
17-03-18 02:05:45.635 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:45.635 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:05:45.635 -07 000000561 INF: FPGA: Recv YRDPOS 143081
17-03-18 02:05:45.645 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:05:45.645 -07 000000437 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:45.645 -07 000000424 INF: FPGA: Xmit ZDACW 38113\n [Z Motor]
17-03-18 02:05:45.645 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:05:45.645 -07 000000437 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:05:45.645 -07 000000437 INF: Y Motor: Moving 1342 steps-19
17-03-18 02:05:45.655 -07 000000424 INF: FPGA: 'ZDACW 38113' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:05:45.655 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:05:45.665 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:05:45.675 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:05:45.675 -07 000000561 INF: FPGA: Recv ZDACR 38113
17-03-18 02:05:45.685 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:05:45.685 -07 000000424 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 02:05:45.815 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 02:05:45.815 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:05:45.815 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:45.815 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 02:05:45.815 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 02:05:45.815 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:45.815 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:05:45.815 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:05:45.815 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:05:45.825 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:05:45.855 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:05:45.855 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 220 ms overall
17-03-18 02:05:46.035 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 02:05:46.035 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 02:05:46.085 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:46.085 -07 000000561 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:05:46.095 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:05:46.095 -07 000000437 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:46.095 -07 000000437 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:05:46.095 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.130 mm/sec
17-03-18 02:05:46.475 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:05:46.475 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:05:47.045 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:47.045 -07 000000569 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:05:47.055 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:05:47.055 -07 000000437 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:47.085 -07 000000437 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:05:47.085 -07 000000437 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:05:47.085 -07 000000437 INF: Y Motor: Moved to 70.6885 after 1452 ms (table move)
17-03-18 02:05:47.085 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174470 mm (DAC = 38113)
17-03-18 02:05:47.095 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:47.095 -07 000000438 INF: FPGA: Recv ZSGSRD 36443
17-03-18 02:05:47.105 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:05:47.105 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:47.105 -07 000000438 INF: FPGA: Recv ZSGSRD 36450
17-03-18 02:05:47.115 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:47.115 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:47.115 -07 000000512 INF: FPGA: Recv ZSGSRD 36454
17-03-18 02:05:47.125 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:47.125 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:47.125 -07 000000579 INF: FPGA: Recv ZSGSRD 36451
17-03-18 02:05:47.135 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:47.135 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:47.135 -07 000000467 INF: FPGA: Recv ZSGSRD 36454
17-03-18 02:05:47.145 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:47.145 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:47.145 -07 000000467 INF: FPGA: Recv ZSGSRD 36448
17-03-18 02:05:47.155 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:47.155 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:47.155 -07 000000467 INF: FPGA: Recv ZSGSRD 36444
17-03-18 02:05:47.165 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:47.165 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:47.165 -07 000000438 INF: FPGA: Recv ZSGSRD 36446
17-03-18 02:05:47.175 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:47.175 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:47.175 -07 000000438 INF: FPGA: Recv ZSGSRD 36452
17-03-18 02:05:47.185 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:47.185 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:47.185 -07 000000561 INF: FPGA: Recv ZSGSRD 36454
17-03-18 02:05:47.195 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:47.195 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:05:47.195 -07 000000561 INF: FPGA: Recv ZPIEZORD 32615
17-03-18 02:05:47.205 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:47.205 -07 000000461 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.816 V. Piezo Error = -8.5 V.
17-03-18 02:05:47.205 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.5 um, Read 10 ADC samples: Avg = 36450 (-173.6 uncal um), Error = 0.9 uncal um, Median = 36450 (-173.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36443 (-173.6 uncal um), Max = 36454 (-173.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:05:47.205 -07 000000461 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36450, posNoise = 4, negNoise = 7
17-03-18 02:05:47.205 -07 000000461 INF: Z Motor: After move to -0.174470, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:05:47.205 -07 000000461 INF: Z Motor: Settle wait time = 1455 ms, measure time = 118 ms (allowed 150 ms), total time = 1573 ms
17-03-18 02:05:47.205 -07 000000461 INF: Z Motor: Waiting extra 32 ms after reading position to reach expected total of 150 ms
17-03-18 02:05:47.245 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 02:05:47.245 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:05:47.245 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:05:47.245 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:05:47.245 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:05:47.245 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:05:47.245 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:05:47.245 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:05:47.245 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:05:47.245 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:05:47.255 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:05:47.255 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:05:47.265 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:05:47.265 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:05:47.265 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:05:47.315 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:05:47.355 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 3.99219,
17-03-18 02:05:47.615 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:05:47.615 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:05:47.615 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:05:47.615 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-18 02:05:47.655 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:05:47.655 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 02:05:47.655 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 02:05:47.725 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:05:47.725 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:47.735 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:05:47.735 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:05:47.755 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:05:47.755 -07 000000579 INF: Autofocus start
17-03-18 02:05:47.755 -07 000000579 INF: MeasureProfile start
17-03-18 02:05:47.755 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:05:47.765 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:05:47.765 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:05:47.775 -07 000000579 INF: MeasureProfile done
17-03-18 02:05:47.775 -07 000000579 INF: X=-80  Z correction [um]=-0.4885566
17-03-18 02:05:47.775 -07 000000579 INF: Autofocus finished
17-03-18 02:05:47.965 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:05:47.965 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:05:47.965 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.174485884578322. ----------
17-03-18 02:05:47.975 -07 000000610 INF: Cycle	95	Tile	14	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:05:47.975 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36519, sync = True, waitForSettling = True)
17-03-18 02:05:47.975 -07 000000610 INF: Z Motor: Moving to -0.167173 mm, started at -0.174486 mm, distance = 7.31 um
17-03-18 02:05:47.975 -07 000000610 INF: FPGA: Xmit ZDACW 36519\n [Z Motor]
17-03-18 02:05:47.975 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:05:47.985 -07 000000610 INF: FPGA: 'ZDACW 36519' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:05:47.985 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:05:47.985 -07 000000438 INF: FPGA: Recv ZDACR 36519
17-03-18 02:05:47.995 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:47.995 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:05:48.145 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:48.145 -07 000000437 INF: FPGA: Recv ZSGSRD 35318
17-03-18 02:05:48.155 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:05:48.155 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:48.155 -07 000000444 INF: FPGA: Recv ZSGSRD 35312
17-03-18 02:05:48.165 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:48.165 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:48.165 -07 000000437 INF: FPGA: Recv ZSGSRD 35303
17-03-18 02:05:48.175 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:48.175 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:48.175 -07 000000579 INF: FPGA: Recv ZSGSRD 35314
17-03-18 02:05:48.185 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:48.185 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:48.185 -07 000000444 INF: FPGA: Recv ZSGSRD 35317
17-03-18 02:05:48.195 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:48.195 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:48.195 -07 000000437 INF: FPGA: Recv ZSGSRD 35308
17-03-18 02:05:48.205 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:48.205 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:48.205 -07 000000512 INF: FPGA: Recv ZSGSRD 35314
17-03-18 02:05:48.215 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:48.215 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:48.215 -07 000000461 INF: FPGA: Recv ZSGSRD 35312
17-03-18 02:05:48.225 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:48.225 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:48.225 -07 000000467 INF: FPGA: Recv ZSGSRD 35317
17-03-18 02:05:48.235 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:48.235 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:48.235 -07 000000437 INF: FPGA: Recv ZSGSRD 35314
17-03-18 02:05:48.245 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:48.245 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:05:48.245 -07 000000467 INF: FPGA: Recv ZPIEZORD 31100
17-03-18 02:05:48.255 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:48.255 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.572 V. Piezo Error = -9.3 V.
17-03-18 02:05:48.255 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35313 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35314 (-166.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35303 (-166.2 uncal um), Max = 35318 (-166.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 02:05:48.255 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35313, posNoise = 5, negNoise = 10
17-03-18 02:05:48.255 -07 000000610 INF: Z Motor: After move to -0.167173, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:05:48.255 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:05:48.255 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:05:48.255 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:05:48.255 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:05:48.255 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:05:48.255 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:05:48.255 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:05:48.255 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:05:48.255 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:05:48.255 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:05:48.255 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:05:48.255 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:05:48.255 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:05:48.265 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:05:48.265 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:05:48.265 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:05:48.265 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:05:48.265 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:05:48.265 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:05:48.265 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:05:48.265 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:05:48.275 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36696 150\n [Camera]
17-03-18 02:05:48.475 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:05:48.865 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:05:48.865 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:05:48.865 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:05:48.865 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:05:48.865 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:05:48.865 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:05:48.865 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:05:48.865 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:05:48.865 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:05:48.865 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:05:49.055 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36696 778
17-03-18 02:05:49.205 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:05:49.245 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:05:49.245 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:05:49.245 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:49.245 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:05:49.245 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:05:49.245 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:49.245 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:05:49.245 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:05:49.245 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:05:49.255 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:05:49.395 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:05:49.395 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:05:49.395 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:05:49.395 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:05:49.395 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:05:49.405 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:05:49.405 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:05:49.405 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:05:49.405 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:05:49.405 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:05:49.585 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:05:49.705 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:05:49.715 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36696 150' command took 2 ms to send, 1430 ms to get response, and 1438 ms overall
17-03-18 02:05:49.715 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:05:49.715 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.16718155537314. ------
17-03-18 02:05:49.715 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:05:49.715 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17379 mm
17-03-18 02:05:49.715 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:05:49.715 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 02:05:49.715 -07 000000512 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 02:05:49.715 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 37964, sync = True, waitForSettling = False)
17-03-18 02:05:49.715 -07 000000424 INF: Z Motor: Moving to -0.173788 mm, started at -0.167182 mm, distance = -6.61 um
17-03-18 02:05:49.715 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:05:49.725 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:05:49.725 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:49.725 -07 000000461 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:05:49.735 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:05:49.735 -07 000000512 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:49.735 -07 000000512 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:05:49.735 -07 000000512 INF: Y Motor: Moving 1351 steps-29
17-03-18 02:05:49.735 -07 000000424 INF: FPGA: Xmit ZDACW 37964\n [Z Motor]
17-03-18 02:05:49.735 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:05:49.745 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:05:49.745 -07 000000424 INF: FPGA: 'ZDACW 37964' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 02:05:49.755 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:05:49.765 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:05:49.765 -07 000000444 INF: FPGA: Recv ZDACR 37964
17-03-18 02:05:49.775 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:05:49.775 -07 000000424 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 02:05:49.795 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 02:05:49.795 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:05:49.795 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:49.795 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 02:05:49.805 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:05:49.805 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:49.805 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:05:49.805 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 02:05:49.805 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 02:05:49.815 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:05:49.945 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:05:49.945 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 02:05:50.125 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 02:05:50.125 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:05:50.175 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:50.185 -07 000000502 INF: FPGA: Recv YRDPOS 146470
17-03-18 02:05:50.185 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:05:50.185 -07 000000512 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:50.185 -07 000000512 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:05:50.185 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-18 02:05:51.135 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:51.135 -07 000000424 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:05:51.145 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:05:51.145 -07 000000512 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:51.185 -07 000000512 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:05:51.185 -07 000000512 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:05:51.185 -07 000000512 INF: Y Motor: Moved to 71.5190 after 1461 ms (table move)
17-03-18 02:05:51.185 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173788 mm (DAC = 37964)
17-03-18 02:05:51.185 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:51.195 -07 000000424 INF: FPGA: Recv ZSGSRD 36332
17-03-18 02:05:51.195 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 02:05:51.195 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:51.195 -07 000000502 INF: FPGA: Recv ZSGSRD 36336
17-03-18 02:05:51.205 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:51.205 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:51.205 -07 000000424 INF: FPGA: Recv ZSGSRD 36347
17-03-18 02:05:51.215 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:51.215 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:51.215 -07 000000444 INF: FPGA: Recv ZSGSRD 36343
17-03-18 02:05:51.225 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:51.225 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:51.225 -07 000000461 INF: FPGA: Recv ZSGSRD 36340
17-03-18 02:05:51.235 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:51.235 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:51.235 -07 000000424 INF: FPGA: Recv ZSGSRD 36344
17-03-18 02:05:51.245 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:51.245 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:51.245 -07 000000579 INF: FPGA: Recv ZSGSRD 36343
17-03-18 02:05:51.255 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:51.255 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:51.255 -07 000000512 INF: FPGA: Recv ZSGSRD 36343
17-03-18 02:05:51.265 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:51.265 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:51.265 -07 000000579 INF: FPGA: Recv ZSGSRD 36347
17-03-18 02:05:51.275 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:51.275 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:51.275 -07 000000502 INF: FPGA: Recv ZSGSRD 36352
17-03-18 02:05:51.285 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:51.285 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:05:51.285 -07 000000467 INF: FPGA: Recv ZPIEZORD 32482
17-03-18 02:05:51.295 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:51.295 -07 000000437 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.793 V. Piezo Error = -8.5 V.
17-03-18 02:05:51.295 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.8 um, Read 10 ADC samples: Avg = 36343 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36343 (-172.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36332 (-172.8 uncal um), Max = 36352 (-173.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 02:05:51.295 -07 000000437 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36343, posNoise = 9, negNoise = 11
17-03-18 02:05:51.295 -07 000000437 INF: Z Motor: After move to -0.173788, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:05:51.295 -07 000000437 INF: Z Motor: Settle wait time = 1467 ms, measure time = 104 ms (allowed 150 ms), total time = 1571 ms
17-03-18 02:05:51.295 -07 000000437 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 02:05:51.345 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 02:05:51.345 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:05:51.345 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:05:51.345 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:05:51.345 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:05:51.345 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:05:51.345 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:05:51.345 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:05:51.345 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:05:51.345 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:05:51.355 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:05:51.355 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:05:51.355 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:05:51.355 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:05:51.365 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:05:51.405 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:05:51.475 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:05:51.475 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:05:51.705 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:05:51.705 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:05:51.705 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:05:51.705 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:05:51.745 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:05:51.745 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 02:05:51.745 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:05:51.825 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:05:51.825 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:51.825 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:05:51.825 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:05:51.845 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:05:51.845 -07 000000502 INF: Autofocus start
17-03-18 02:05:51.845 -07 000000502 INF: MeasureProfile start
17-03-18 02:05:51.845 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:05:51.855 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:05:51.855 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:05:51.865 -07 000000502 INF: MeasureProfile done
17-03-18 02:05:51.865 -07 000000502 INF: X=48  Z correction [um]=0.1739867
17-03-18 02:05:51.865 -07 000000502 INF: Autofocus finished
17-03-18 02:05:52.055 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:05:52.055 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:05:52.065 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.173798493879153. ----------
17-03-18 02:05:52.065 -07 000000610 INF: Cycle	95	Tile	15	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:05:52.065 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36515, sync = True, waitForSettling = True)
17-03-18 02:05:52.065 -07 000000610 INF: Z Motor: Moving to -0.167155 mm, started at -0.173798 mm, distance = 6.64 um
17-03-18 02:05:52.065 -07 000000610 INF: FPGA: Xmit ZDACW 36515\n [Z Motor]
17-03-18 02:05:52.065 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:05:52.075 -07 000000610 INF: FPGA: 'ZDACW 36515' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:05:52.075 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:05:52.075 -07 000000467 INF: FPGA: Recv ZDACR 36515
17-03-18 02:05:52.085 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:52.085 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:05:52.235 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:52.235 -07 000000444 INF: FPGA: Recv ZSGSRD 35308
17-03-18 02:05:52.245 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:05:52.245 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:52.245 -07 000000444 INF: FPGA: Recv ZSGSRD 35313
17-03-18 02:05:52.255 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:52.255 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:52.255 -07 000000629 INF: FPGA: Recv ZSGSRD 35307
17-03-18 02:05:52.265 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:52.265 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:52.265 -07 000000437 INF: FPGA: Recv ZSGSRD 35309
17-03-18 02:05:52.275 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:52.275 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:52.275 -07 000000502 INF: FPGA: Recv ZSGSRD 35312
17-03-18 02:05:52.285 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:52.285 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:52.285 -07 000000461 INF: FPGA: Recv ZSGSRD 35303
17-03-18 02:05:52.295 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:52.295 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:52.295 -07 000000437 INF: FPGA: Recv ZSGSRD 35305
17-03-18 02:05:52.305 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:52.305 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:52.305 -07 000000444 INF: FPGA: Recv ZSGSRD 35312
17-03-18 02:05:52.315 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:52.315 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:52.315 -07 000000444 INF: FPGA: Recv ZSGSRD 35314
17-03-18 02:05:52.325 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:52.325 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:52.325 -07 000000579 INF: FPGA: Recv ZSGSRD 35311
17-03-18 02:05:52.335 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:52.335 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:05:52.335 -07 000000444 INF: FPGA: Recv ZPIEZORD 31094
17-03-18 02:05:52.345 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:52.345 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.572 V. Piezo Error = -9.3 V.
17-03-18 02:05:52.345 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35309 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35310 (-166.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35303 (-166.2 uncal um), Max = 35314 (-166.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:05:52.345 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35309, posNoise = 5, negNoise = 6
17-03-18 02:05:52.345 -07 000000610 INF: Z Motor: After move to -0.167155, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:05:52.345 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:05:52.345 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:05:52.345 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:05:52.345 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:05:52.345 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:05:52.345 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:05:52.345 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:05:52.345 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:05:52.345 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:05:52.345 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:05:52.345 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:05:52.345 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:05:52.345 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:05:52.355 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:05:52.355 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:05:52.355 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:05:52.355 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:05:52.365 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:05:52.365 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:05:52.365 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:05:52.365 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:05:52.365 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36692 150\n [Camera]
17-03-18 02:05:52.565 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:05:52.725 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 3.997626,
17-03-18 02:05:52.955 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:05:52.955 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:05:52.955 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:05:52.955 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:05:52.965 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:05:52.965 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:05:52.965 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:05:52.965 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start.
17-03-18 02:05:52.965 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:05:52.965 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:05:53.145 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36692 778
17-03-18 02:05:53.295 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:05:53.345 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 02:05:53.345 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 02:05:53.345 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:53.345 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 02:05:53.345 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 02:05:53.345 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:53.345 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:05:53.355 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:05:53.355 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:05:53.355 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:05:53.485 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:05:53.485 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:05:53.485 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:05:53.495 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:05:53.495 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:05:53.495 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:05:53.495 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:05:53.495 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 02:05:53.505 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:05:53.505 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:05:53.675 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:05:53.685 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:05:53.685 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36692 150' command took 2 ms to send, 1310 ms to get response, and 1317 ms overall
17-03-18 02:05:53.685 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:05:53.685 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.167155858524573. ------
17-03-18 02:05:53.804 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17352 mm
17-03-18 02:05:53.804 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:05:53.804 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:05:53.814 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:05:53.814 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:05:53.814 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 02:05:53.814 -07 000000424 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 02:05:53.814 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:05:53.814 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 37906, sync = True, waitForSettling = False)
17-03-18 02:05:53.814 -07 000000444 INF: Z Motor: Moving to -0.173523 mm, started at -0.167156 mm, distance = -6.37 um
17-03-18 02:05:53.824 -07 000000444 INF: FPGA: Xmit ZDACW 37906\n [Z Motor]
17-03-18 02:05:53.824 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 02:05:53.834 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:53.834 -07 000000444 INF: FPGA: 'ZDACW 37906' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 02:05:53.834 -07 000000629 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:05:53.844 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:05:53.844 -07 000000424 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:53.844 -07 000000424 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:05:53.844 -07 000000424 INF: Y Motor: Moving 1350 steps-29
17-03-18 02:05:53.844 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:05:53.844 -07 000000591 INF: FPGA: Recv ZDACR 37906
17-03-18 02:05:53.854 -07 000000444 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:05:53.854 -07 000000444 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 02:05:53.854 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:05:53.884 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 02:05:53.884 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:05:53.884 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:53.884 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 02:05:53.884 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:05:53.884 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:53.894 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:05:53.894 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:05:53.894 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:05:53.904 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:05:54.014 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:05:54.014 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 02:05:54.224 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 02:05:54.224 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:05:54.274 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:54.274 -07 000000437 INF: FPGA: Recv YRDPOS 148172
17-03-18 02:05:54.284 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:05:54.284 -07 000000424 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:54.284 -07 000000424 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 02:05:54.284 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.180 mm/sec
17-03-18 02:05:55.234 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:55.234 -07 000000502 INF: FPGA: Recv YRDPOS 148172
17-03-18 02:05:55.244 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:05:55.244 -07 000000424 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:55.264 -07 000000424 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:05:55.264 -07 000000424 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:05:55.264 -07 000000424 INF: Y Motor: Moved to 72.3496 after 1457 ms (table move)
17-03-18 02:05:55.274 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173523 mm (DAC = 37906)
17-03-18 02:05:55.274 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:55.274 -07 000000591 INF: FPGA: Recv ZSGSRD 36300
17-03-18 02:05:55.284 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:05:55.284 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:55.284 -07 000000629 INF: FPGA: Recv ZSGSRD 36306
17-03-18 02:05:55.294 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:55.294 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:55.294 -07 000000629 INF: FPGA: Recv ZSGSRD 36308
17-03-18 02:05:55.304 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:55.304 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:55.304 -07 000000512 INF: FPGA: Recv ZSGSRD 36306
17-03-18 02:05:55.314 -07 000000579 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:55.314 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:55.314 -07 000000444 INF: FPGA: Recv ZSGSRD 36304
17-03-18 02:05:55.324 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:55.324 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:55.324 -07 000000502 INF: FPGA: Recv ZSGSRD 36300
17-03-18 02:05:55.334 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:55.334 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:55.334 -07 000000502 INF: FPGA: Recv ZSGSRD 36300
17-03-18 02:05:55.344 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:55.344 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:55.344 -07 000000502 INF: FPGA: Recv ZSGSRD 36302
17-03-18 02:05:55.354 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:55.354 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:55.354 -07 000000502 INF: FPGA: Recv ZSGSRD 36297
17-03-18 02:05:55.364 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:55.364 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:55.364 -07 000000462 INF: FPGA: Recv ZSGSRD 36307
17-03-18 02:05:55.374 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:55.374 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:05:55.374 -07 000000512 INF: FPGA: Recv ZPIEZORD 32453
17-03-18 02:05:55.384 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:55.384 -07 000000579 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.784 V. Piezo Error = -8.5 V.
17-03-18 02:05:55.384 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36303 (-172.7 uncal um), Error = 0.9 uncal um, Median = 36303 (-172.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36297 (-172.6 uncal um), Max = 36308 (-172.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:05:55.384 -07 000000579 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36303, posNoise = 5, negNoise = 6
17-03-18 02:05:55.384 -07 000000579 INF: Z Motor: After move to -0.173523, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:05:55.384 -07 000000579 INF: Z Motor: Settle wait time = 1460 ms, measure time = 108 ms (allowed 150 ms), total time = 1568 ms
17-03-18 02:05:55.384 -07 000000579 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:05:55.434 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 02:05:55.434 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:05:55.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:05:55.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:05:55.434 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:05:55.434 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:05:55.434 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:05:55.434 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:05:55.444 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:05:55.444 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:05:55.444 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:05:55.444 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:05:55.454 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:05:55.454 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 02:05:55.454 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:05:55.504 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:05:55.804 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:05:55.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:05:55.804 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:05:55.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:05:55.844 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:05:55.844 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 02:05:55.844 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 02:05:55.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:05:55.914 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:55.914 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:05:55.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:05:55.944 -07 000000444 INF: Autofocus start
17-03-18 02:05:55.944 -07 000000444 INF: MeasureProfile start
17-03-18 02:05:55.944 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:05:55.944 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:05:55.954 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:05:55.954 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:05:55.954 -07 000000444 INF: MeasureProfile done
17-03-18 02:05:55.954 -07 000000444 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:05:55.954 -07 000000444 INF: Autofocus finished
17-03-18 02:05:56.154 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:05:56.154 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:05:56.154 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.173541525393483. ----------
17-03-18 02:05:56.154 -07 000000610 INF: Cycle	95	Tile	16	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:05:56.164 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36420, sync = True, waitForSettling = True)
17-03-18 02:05:56.164 -07 000000610 INF: Z Motor: Moving to -0.166720 mm, started at -0.173542 mm, distance = 6.82 um
17-03-18 02:05:56.164 -07 000000610 INF: FPGA: Xmit ZDACW 36420\n [Z Motor]
17-03-18 02:05:56.164 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:05:56.174 -07 000000610 INF: FPGA: 'ZDACW 36420' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:05:56.174 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:05:56.174 -07 000000467 INF: FPGA: Recv ZDACR 36420
17-03-18 02:05:56.184 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:56.184 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:05:56.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:56.334 -07 000000512 INF: FPGA: Recv ZSGSRD 35243
17-03-18 02:05:56.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:05:56.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:56.344 -07 000000579 INF: FPGA: Recv ZSGSRD 35247
17-03-18 02:05:56.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:56.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:56.354 -07 000000512 INF: FPGA: Recv ZSGSRD 35247
17-03-18 02:05:56.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:56.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:56.364 -07 000000579 INF: FPGA: Recv ZSGSRD 35241
17-03-18 02:05:56.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:56.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:56.374 -07 000000512 INF: FPGA: Recv ZSGSRD 35240
17-03-18 02:05:56.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:56.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:56.384 -07 000000579 INF: FPGA: Recv ZSGSRD 35244
17-03-18 02:05:56.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:56.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:56.394 -07 000000512 INF: FPGA: Recv ZSGSRD 35241
17-03-18 02:05:56.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:56.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:56.404 -07 000000579 INF: FPGA: Recv ZSGSRD 35242
17-03-18 02:05:56.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:56.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:56.414 -07 000000512 INF: FPGA: Recv ZSGSRD 35242
17-03-18 02:05:56.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:56.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:56.424 -07 000000579 INF: FPGA: Recv ZSGSRD 35240
17-03-18 02:05:56.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:56.434 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:05:56.434 -07 000000579 INF: FPGA: Recv ZPIEZORD 30999
17-03-18 02:05:56.444 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:56.444 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.557 V. Piezo Error = -9.4 V.
17-03-18 02:05:56.444 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35243 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35242 (-165.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35240 (-165.8 uncal um), Max = 35247 (-165.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:05:56.444 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35243, posNoise = 4, negNoise = 3
17-03-18 02:05:56.444 -07 000000610 INF: Z Motor: After move to -0.166720, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:05:56.444 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:05:56.444 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:05:56.444 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:05:56.444 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:05:56.444 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:05:56.444 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:05:56.444 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:05:56.444 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:05:56.444 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:05:56.444 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:05:56.444 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:05:56.444 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:05:56.444 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:05:56.454 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:05:56.454 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:05:56.454 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:05:56.454 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:05:56.464 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:05:56.464 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:05:56.464 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 02:05:56.464 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:05:56.464 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36597 150\n [Camera]
17-03-18 02:05:56.474 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:05:56.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:05:56.664 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:05:57.064 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:05:57.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:05:57.064 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:05:57.064 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:05:57.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:05:57.064 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:05:57.064 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:05:57.064 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:05:57.064 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:05:57.064 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-18 02:05:57.254 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36597 778
17-03-18 02:05:57.404 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:05:57.454 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 02:05:57.454 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:05:57.454 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:57.454 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 02:05:57.454 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:05:57.454 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:57.454 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:05:57.454 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:05:57.454 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:05:57.464 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:05:57.594 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:05:57.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:05:57.594 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:05:57.594 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:05:57.594 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-18 02:05:57.594 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:05:57.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:05:57.594 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:05:57.594 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:05:57.604 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 02:05:57.784 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:05:57.784 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:05:57.784 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36597 150' command took 2 ms to send, 1306 ms to get response, and 1317 ms overall
17-03-18 02:05:57.784 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:05:57.784 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.166731860523216. ------
17-03-18 02:05:57.794 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17319 mm
17-03-18 02:05:57.794 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:05:57.794 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 02:05:57.794 -07 000000591 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-18 02:05:57.794 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 37833, sync = True, waitForSettling = False)
17-03-18 02:05:57.794 -07 000000424 INF: Z Motor: Moving to -0.173188 mm, started at -0.166732 mm, distance = -6.46 um
17-03-18 02:05:57.804 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:57.804 -07 000000467 INF: FPGA: Recv YRDPOS 148172
17-03-18 02:05:57.814 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:05:57.814 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:05:57.814 -07 000000591 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:57.814 -07 000000591 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:05:57.814 -07 000000591 INF: Y Motor: Moving 1349 steps-27
17-03-18 02:05:57.814 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:05:57.824 -07 000000424 INF: FPGA: Xmit ZDACW 37833\n [Z Motor]
17-03-18 02:05:57.824 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:05:57.824 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:05:57.834 -07 000000424 INF: FPGA: 'ZDACW 37833' command took 0 ms to send, 0 ms to get response, and 33 ms overall
17-03-18 02:05:57.844 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:05:57.854 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:05:57.864 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:05:57.864 -07 000000611 INF: FPGA: Recv ZDACR 37833
17-03-18 02:05:57.874 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 40 ms overall
17-03-18 02:05:57.874 -07 000000424 INF: Z Motor: MoveAbsStepped took 76 ms (did NOT wait for settling yet))
17-03-18 02:05:57.984 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 02:05:57.984 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 02:05:57.984 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:57.984 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 02:05:57.984 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:05:57.984 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:57.984 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:05:57.994 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:05:57.994 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:05:57.994 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:05:58.054 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:05:58.054 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 02:05:58.094 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 3.997626,
17-03-18 02:05:58.214 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 02:05:58.214 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-18 02:05:58.264 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:58.264 -07 000000611 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:05:58.274 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:05:58.274 -07 000000591 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:58.274 -07 000000591 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 02:05:58.274 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.843 mm, average velocity = 2.071 mm/sec
17-03-18 02:05:59.224 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:05:59.224 -07 000000455 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:05:59.234 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:59.234 -07 000000591 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:05:59.254 -07 000000591 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:05:59.254 -07 000000591 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:05:59.254 -07 000000591 INF: Y Motor: Moved to 73.1763 after 1464 ms (table move)
17-03-18 02:05:59.264 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173188 mm (DAC = 37833)
17-03-18 02:05:59.264 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:59.264 -07 000000455 INF: FPGA: Recv ZSGSRD 36251
17-03-18 02:05:59.274 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:05:59.274 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:59.274 -07 000000455 INF: FPGA: Recv ZSGSRD 36245
17-03-18 02:05:59.284 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:59.284 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:59.284 -07 000000455 INF: FPGA: Recv ZSGSRD 36254
17-03-18 02:05:59.294 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:59.294 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:59.294 -07 000000455 INF: FPGA: Recv ZSGSRD 36252
17-03-18 02:05:59.304 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:59.304 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:59.304 -07 000000455 INF: FPGA: Recv ZSGSRD 36251
17-03-18 02:05:59.314 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:59.314 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:59.314 -07 000000455 INF: FPGA: Recv ZSGSRD 36249
17-03-18 02:05:59.324 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:59.324 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:59.324 -07 000000455 INF: FPGA: Recv ZSGSRD 36249
17-03-18 02:05:59.334 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:59.334 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:59.334 -07 000000455 INF: FPGA: Recv ZSGSRD 36252
17-03-18 02:05:59.344 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:59.344 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:59.344 -07 000000502 INF: FPGA: Recv ZSGSRD 36249
17-03-18 02:05:59.354 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:59.354 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:05:59.354 -07 000000512 INF: FPGA: Recv ZSGSRD 36248
17-03-18 02:05:59.364 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:59.364 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:05:59.364 -07 000000512 INF: FPGA: Recv ZPIEZORD 32392
17-03-18 02:05:59.374 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:05:59.374 -07 000000462 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.773 V. Piezo Error = -8.5 V.
17-03-18 02:05:59.374 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36250 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36250 (-172.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36245 (-172.3 uncal um), Max = 36254 (-172.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:05:59.374 -07 000000462 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36250, posNoise = 4, negNoise = 5
17-03-18 02:05:59.374 -07 000000462 INF: Z Motor: After move to -0.173188, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:05:59.374 -07 000000462 INF: Z Motor: Settle wait time = 1464 ms, measure time = 109 ms (allowed 150 ms), total time = 1573 ms
17-03-18 02:05:59.374 -07 000000462 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:05:59.424 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 02:05:59.424 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:05:59.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:05:59.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:05:59.424 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:05:59.424 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:05:59.424 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:05:59.424 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:05:59.424 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:05:59.424 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:05:59.434 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:05:59.434 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:05:59.434 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:05:59.434 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:05:59.444 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:05:59.484 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:05:59.784 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:05:59.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:05:59.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:05:59.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 02:05:59.824 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:05:59.824 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 02:05:59.824 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 378 ms to get response, and 386 ms overall
17-03-18 02:05:59.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 02:05:59.904 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:05:59.904 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:05:59.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:05:59.934 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:05:59.934 -07 000000462 INF: Autofocus start
17-03-18 02:05:59.934 -07 000000462 INF: MeasureProfile start
17-03-18 02:05:59.934 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:05:59.944 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:05:59.944 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:05:59.954 -07 000000462 INF: MeasureProfile done
17-03-18 02:05:59.954 -07 000000462 INF: X=48  Z correction [um]=0.1739867
17-03-18 02:05:59.954 -07 000000462 INF: Autofocus finished
17-03-18 02:06:00.144 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:06:00.144 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:06:00.144 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.17320104214997. ----------
17-03-18 02:06:00.144 -07 000000610 INF: Cycle	95	Tile	17	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:06:00.154 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36384, sync = True, waitForSettling = True)
17-03-18 02:06:00.154 -07 000000610 INF: Z Motor: Moving to -0.166555 mm, started at -0.173201 mm, distance = 6.65 um
17-03-18 02:06:00.154 -07 000000610 INF: FPGA: Xmit ZDACW 36384\n [Z Motor]
17-03-18 02:06:00.154 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:06:00.164 -07 000000610 INF: FPGA: 'ZDACW 36384' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:06:00.164 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:06:00.164 -07 000000591 INF: FPGA: Recv ZDACR 36384
17-03-18 02:06:00.174 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:00.174 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:06:00.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:00.324 -07 000000424 INF: FPGA: Recv ZSGSRD 35217
17-03-18 02:06:00.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:06:00.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:00.334 -07 000000444 INF: FPGA: Recv ZSGSRD 35214
17-03-18 02:06:00.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:00.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:00.344 -07 000000629 INF: FPGA: Recv ZSGSRD 35217
17-03-18 02:06:00.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:00.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:00.354 -07 000000579 INF: FPGA: Recv ZSGSRD 35210
17-03-18 02:06:00.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:00.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:00.364 -07 000000467 INF: FPGA: Recv ZSGSRD 35225
17-03-18 02:06:00.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:00.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:00.374 -07 000000467 INF: FPGA: Recv ZSGSRD 35224
17-03-18 02:06:00.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:00.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:00.384 -07 000000611 INF: FPGA: Recv ZSGSRD 35223
17-03-18 02:06:00.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:00.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:00.394 -07 000000462 INF: FPGA: Recv ZSGSRD 35219
17-03-18 02:06:00.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:00.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:00.404 -07 000000611 INF: FPGA: Recv ZSGSRD 35215
17-03-18 02:06:00.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:00.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:00.414 -07 000000462 INF: FPGA: Recv ZSGSRD 35217
17-03-18 02:06:00.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:00.424 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:06:00.424 -07 000000467 INF: FPGA: Recv ZPIEZORD 30969
17-03-18 02:06:00.434 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:00.434 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.552 V. Piezo Error = -9.4 V.
17-03-18 02:06:00.434 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35218 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35217 (-165.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35210 (-165.7 uncal um), Max = 35225 (-165.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:06:00.434 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35218, posNoise = 7, negNoise = 8
17-03-18 02:06:00.434 -07 000000610 INF: Z Motor: After move to -0.166555, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:06:00.434 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:06:00.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:06:00.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:06:00.434 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:06:00.434 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:06:00.434 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:06:00.434 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:06:00.434 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:06:00.434 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:06:00.434 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:06:00.434 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:06:00.434 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:06:00.434 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:06:00.434 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:06:00.434 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:06:00.444 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:06:00.444 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:06:00.454 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 02:06:00.454 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:06:00.454 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 02:06:00.454 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:06:00.454 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36560 150\n [Camera]
17-03-18 02:06:00.654 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:06:01.054 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:06:01.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:06:01.054 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:06:01.054 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:06:01.054 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:06:01.054 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:06:01.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:06:01.054 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:06:01.054 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:06:01.054 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:06:01.244 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36560 778
17-03-18 02:06:01.394 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:06:01.434 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 02:06:01.434 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 02:06:01.434 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:01.434 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:06:01.444 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 02:06:01.444 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:06:01.444 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:01.444 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:06:01.444 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:06:01.444 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:06:01.474 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:06:01.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:06:01.584 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:06:01.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:06:01.584 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:06:01.584 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:06:01.584 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:06:01.584 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:06:01.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:06:01.584 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:06:01.584 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:06:01.584 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:06:01.774 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:06:01.774 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:06:01.774 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36560 150' command took 2 ms to send, 1305 ms to get response, and 1317 ms overall
17-03-18 02:06:01.894 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:06:01.894 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.166571255219672. ------
17-03-18 02:06:01.904 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:06:01.904 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17294 mm
17-03-18 02:06:01.904 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:06:01.904 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 02:06:01.904 -07 000000424 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 02:06:01.904 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:06:01.904 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 37778, sync = True, waitForSettling = False)
17-03-18 02:06:01.904 -07 000000611 INF: Z Motor: Moving to -0.172937 mm, started at -0.166571 mm, distance = -6.37 um
17-03-18 02:06:01.914 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:06:01.914 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:01.914 -07 000000629 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:06:01.924 -07 000000611 INF: FPGA: Xmit ZDACW 37778\n [Z Motor]
17-03-18 02:06:01.924 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:06:01.924 -07 000000424 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:01.924 -07 000000424 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:06:01.924 -07 000000424 INF: Y Motor: Moving 1354 steps-33
17-03-18 02:06:01.924 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:06:01.934 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:06:01.934 -07 000000611 INF: FPGA: 'ZDACW 37778' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:06:01.944 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:06:01.954 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:06:01.954 -07 000000444 INF: FPGA: Recv ZDACR 37778
17-03-18 02:06:01.964 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:06:01.964 -07 000000611 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 02:06:01.984 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 02:06:01.984 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:06:01.984 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:01.984 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 02:06:01.984 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:06:01.984 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:01.994 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:06:01.994 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:06:01.994 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 02:06:02.004 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:06:02.134 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:06:02.134 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 225 ms overall
17-03-18 02:06:02.314 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 02:06:02.314 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:06:02.354 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:02.354 -07 000000455 INF: FPGA: Recv YRDPOS 151569
17-03-18 02:06:02.364 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:06:02.364 -07 000000424 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:02.364 -07 000000424 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:06:02.364 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-18 02:06:03.314 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:03.314 -07 000000467 INF: FPGA: Recv YRDPOS 151569
17-03-18 02:06:03.324 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:03.324 -07 000000424 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:03.344 -07 000000424 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:06:03.344 -07 000000424 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:06:03.344 -07 000000424 INF: Y Motor: Moved to 74.0083 after 1436 ms (table move)
17-03-18 02:06:03.344 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172937 mm (DAC = 37778)
17-03-18 02:06:03.344 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:03.344 -07 000000424 INF: FPGA: Recv ZSGSRD 36210
17-03-18 02:06:03.354 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:06:03.354 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:03.354 -07 000000444 INF: FPGA: Recv ZSGSRD 36205
17-03-18 02:06:03.364 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:03.364 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:03.364 -07 000000502 INF: FPGA: Recv ZSGSRD 36212
17-03-18 02:06:03.374 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:03.374 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:03.374 -07 000000444 INF: FPGA: Recv ZSGSRD 36216
17-03-18 02:06:03.384 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:03.384 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:03.384 -07 000000502 INF: FPGA: Recv ZSGSRD 36214
17-03-18 02:06:03.394 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:03.394 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:03.394 -07 000000444 INF: FPGA: Recv ZSGSRD 36212
17-03-18 02:06:03.404 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:03.404 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:03.404 -07 000000502 INF: FPGA: Recv ZSGSRD 36215
17-03-18 02:06:03.414 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:03.414 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:03.414 -07 000000461 INF: FPGA: Recv ZSGSRD 36216
17-03-18 02:06:03.424 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:03.424 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:03.424 -07 000000444 INF: FPGA: Recv ZSGSRD 36208
17-03-18 02:06:03.434 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:03.434 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:03.434 -07 000000461 INF: FPGA: Recv ZSGSRD 36212
17-03-18 02:06:03.444 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:03.444 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:06:03.444 -07 000000611 INF: FPGA: Recv ZPIEZORD 32310
17-03-18 02:06:03.454 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:03.454 -07 000000512 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.765 V. Piezo Error = -8.6 V.
17-03-18 02:06:03.454 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36212 (-172.1 uncal um), Error = 0.9 uncal um, Median = 36212 (-172.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36205 (-172.0 uncal um), Max = 36216 (-172.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:06:03.454 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36212, posNoise = 4, negNoise = 7
17-03-18 02:06:03.454 -07 000000512 INF: Z Motor: After move to -0.172937, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:06:03.454 -07 000000512 INF: Z Motor: Settle wait time = 1438 ms, measure time = 106 ms (allowed 150 ms), total time = 1544 ms
17-03-18 02:06:03.454 -07 000000512 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:06:03.504 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-18 02:06:03.504 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:06:03.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:06:03.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:06:03.504 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:06:03.504 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:06:03.504 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:06:03.504 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:06:03.514 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:06:03.514 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:06:03.514 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 4.001704,
17-03-18 02:06:03.514 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:06:03.514 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:06:03.524 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:06:03.524 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:06:03.544 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:06:03.584 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:06:03.884 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:06:03.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:06:03.884 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:06:03.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:06:03.924 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:06:03.924 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 02:06:03.924 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 400 ms overall
17-03-18 02:06:04.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:06:04.004 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:04.004 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:06:04.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:06:04.024 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:06:04.024 -07 000000502 INF: Autofocus start
17-03-18 02:06:04.024 -07 000000502 INF: MeasureProfile start
17-03-18 02:06:04.024 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:06:04.034 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:06:04.034 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:06:04.044 -07 000000502 INF: MeasureProfile done
17-03-18 02:06:04.044 -07 000000502 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 02:06:04.044 -07 000000502 INF: Autofocus finished
17-03-18 02:06:04.234 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:06:04.234 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:06:04.234 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.172956922088583. ----------
17-03-18 02:06:04.234 -07 000000610 INF: Cycle	95	Tile	18	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:06:04.244 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36258, sync = True, waitForSettling = True)
17-03-18 02:06:04.244 -07 000000610 INF: Z Motor: Moving to -0.165978 mm, started at -0.172957 mm, distance = 6.98 um
17-03-18 02:06:04.244 -07 000000610 INF: FPGA: Xmit ZDACW 36258\n [Z Motor]
17-03-18 02:06:04.244 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:06:04.254 -07 000000610 INF: FPGA: 'ZDACW 36258' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:06:04.254 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:06:04.254 -07 000000579 INF: FPGA: Recv ZDACR 36258
17-03-18 02:06:04.264 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:04.264 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:06:04.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:04.414 -07 000000512 INF: FPGA: Recv ZSGSRD 35134
17-03-18 02:06:04.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:06:04.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:04.424 -07 000000512 INF: FPGA: Recv ZSGSRD 35128
17-03-18 02:06:04.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:04.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:04.434 -07 000000424 INF: FPGA: Recv ZSGSRD 35124
17-03-18 02:06:04.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:04.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:04.444 -07 000000424 INF: FPGA: Recv ZSGSRD 35125
17-03-18 02:06:04.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:04.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:04.454 -07 000000424 INF: FPGA: Recv ZSGSRD 35127
17-03-18 02:06:04.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:04.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:04.464 -07 000000424 INF: FPGA: Recv ZSGSRD 35132
17-03-18 02:06:04.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:04.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:04.474 -07 000000462 INF: FPGA: Recv ZSGSRD 35130
17-03-18 02:06:04.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:04.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:04.484 -07 000000461 INF: FPGA: Recv ZSGSRD 35127
17-03-18 02:06:04.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:04.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:04.494 -07 000000462 INF: FPGA: Recv ZSGSRD 35128
17-03-18 02:06:04.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:04.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:04.504 -07 000000424 INF: FPGA: Recv ZSGSRD 35126
17-03-18 02:06:04.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:04.514 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:06:04.514 -07 000000461 INF: FPGA: Recv ZPIEZORD 30869
17-03-18 02:06:04.524 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:04.524 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.533 V. Piezo Error = -9.4 V.
17-03-18 02:06:04.524 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35128 (-165.1 uncal um), Error = 0.9 uncal um, Median = 35128 (-165.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35124 (-165.1 uncal um), Max = 35134 (-165.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:06:04.524 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35128, posNoise = 6, negNoise = 4
17-03-18 02:06:04.524 -07 000000610 INF: Z Motor: After move to -0.165978, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:06:04.524 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:06:04.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:06:04.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:06:04.524 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:06:04.524 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:06:04.524 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:06:04.524 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:06:04.524 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:06:04.524 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:06:04.524 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:06:04.524 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:06:04.524 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:06:04.524 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:06:04.534 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:06:04.534 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:06:04.534 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:06:04.534 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:06:04.544 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 02:06:04.544 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:06:04.544 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 02:06:04.544 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:06:04.554 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36435 150\n [Camera]
17-03-18 02:06:04.754 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:06:05.143 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:06:05.143 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:06:05.143 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:06:05.143 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:06:05.143 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:06:05.153 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:06:05.153 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:06:05.153 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-18 02:06:05.153 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:06:05.153 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:06:05.343 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36435 778
17-03-18 02:06:05.483 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:06:05.533 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 02:06:05.533 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:06:05.533 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:05.543 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 02:06:05.543 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:06:05.543 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:05.543 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:06:05.543 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:06:05.543 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:06:05.553 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:06:05.673 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:06:05.673 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:06:05.673 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:06:05.683 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:06:05.683 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:06:05.683 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:06:05.693 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:06:05.693 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:06:05.693 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:06:05.693 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:06:05.863 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:06:05.863 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:06:05.863 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36435 150' command took 2 ms to send, 1309 ms to get response, and 1317 ms overall
17-03-18 02:06:05.873 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:06:05.873 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.165993076126914. ------
17-03-18 02:06:05.873 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:06:05.873 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17179 mm
17-03-18 02:06:05.873 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:06:05.993 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:06:05.993 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 116 ms overall
17-03-18 02:06:05.993 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:06:05.993 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 02:06:05.993 -07 000000444 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 02:06:05.993 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 37527, sync = True, waitForSettling = False)
17-03-18 02:06:05.993 -07 000000455 INF: Z Motor: Moving to -0.171788 mm, started at -0.165993 mm, distance = -5.79 um
17-03-18 02:06:06.003 -07 000000455 INF: FPGA: Xmit ZDACW 37527\n [Z Motor]
17-03-18 02:06:06.003 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:06:06.013 -07 000000455 INF: FPGA: 'ZDACW 37527' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:06:06.013 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:06.013 -07 000000424 INF: FPGA: Recv YRDPOS 151570
17-03-18 02:06:06.023 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:06:06.023 -07 000000444 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:06.023 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:06:06.023 -07 000000461 INF: FPGA: Recv ZDACR 37527
17-03-18 02:06:06.023 -07 000000444 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:06:06.023 -07 000000444 INF: Y Motor: Moving 1350 steps-29
17-03-18 02:06:06.033 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:06:06.033 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:06:06.033 -07 000000455 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-18 02:06:06.083 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 02:06:06.083 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:06:06.083 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:06.083 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:06:06.083 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:06:06.083 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:06.083 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:06:06.093 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:06:06.093 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 02:06:06.093 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 02:06:06.193 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:06:06.193 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 02:06:06.403 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 02:06:06.413 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 375 ms to get response, and 390 ms overall
17-03-18 02:06:06.443 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:06.443 -07 000000424 INF: FPGA: Recv YRDPOS 153255
17-03-18 02:06:06.453 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:06:06.453 -07 000000444 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:06.453 -07 000000444 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-18 02:06:06.453 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.844 mm, average velocity = 2.165 mm/sec
17-03-18 02:06:06.473 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:06:06.473 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:06:07.403 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:07.403 -07 000000611 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:06:07.413 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:06:07.413 -07 000000444 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:07.423 -07 000000444 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:06:07.423 -07 000000444 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:06:07.423 -07 000000444 INF: Y Motor: Moved to 74.8320 after 1434 ms (table move)
17-03-18 02:06:07.433 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171788 mm (DAC = 37527)
17-03-18 02:06:07.433 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:07.433 -07 000000611 INF: FPGA: Recv ZSGSRD 36038
17-03-18 02:06:07.443 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:06:07.443 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:07.443 -07 000000512 INF: FPGA: Recv ZSGSRD 36026
17-03-18 02:06:07.453 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:07.453 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:07.453 -07 000000611 INF: FPGA: Recv ZSGSRD 36030
17-03-18 02:06:07.463 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:07.463 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:07.463 -07 000000569 INF: FPGA: Recv ZSGSRD 36031
17-03-18 02:06:07.473 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:07.473 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:07.473 -07 000000629 INF: FPGA: Recv ZSGSRD 36035
17-03-18 02:06:07.483 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:07.483 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:07.483 -07 000000462 INF: FPGA: Recv ZSGSRD 36035
17-03-18 02:06:07.493 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:07.493 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:07.493 -07 000000569 INF: FPGA: Recv ZSGSRD 36033
17-03-18 02:06:07.503 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:07.503 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:07.503 -07 000000462 INF: FPGA: Recv ZSGSRD 36032
17-03-18 02:06:07.513 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:07.513 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:07.513 -07 000000569 INF: FPGA: Recv ZSGSRD 36027
17-03-18 02:06:07.523 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:07.523 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:07.523 -07 000000462 INF: FPGA: Recv ZSGSRD 36027
17-03-18 02:06:07.533 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:07.533 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:06:07.533 -07 000000569 INF: FPGA: Recv ZPIEZORD 32099
17-03-18 02:06:07.543 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:07.543 -07 000000502 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.726 V. Piezo Error = -8.7 V.
17-03-18 02:06:07.543 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36031 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36032 (-170.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36026 (-170.9 uncal um), Max = 36038 (-171.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:06:07.543 -07 000000502 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36031, posNoise = 7, negNoise = 5
17-03-18 02:06:07.543 -07 000000502 INF: Z Motor: After move to -0.171788, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:06:07.543 -07 000000502 INF: Z Motor: Settle wait time = 1436 ms, measure time = 109 ms (allowed 150 ms), total time = 1545 ms
17-03-18 02:06:07.543 -07 000000502 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:06:07.593 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1715 ms
17-03-18 02:06:07.593 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:06:07.593 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:06:07.593 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:06:07.593 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:06:07.593 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:06:07.593 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:06:07.593 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:06:07.593 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:06:07.593 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:06:07.603 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:06:07.603 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:06:07.603 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:06:07.603 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:06:07.613 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:06:07.653 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:06:07.953 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:06:07.953 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:06:07.953 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:06:07.953 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:06:07.993 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:06:07.993 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 02:06:07.993 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:06:08.073 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:06:08.073 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:08.073 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:06:08.073 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:06:08.093 -07 000000462 INF: Autofocus start
17-03-18 02:06:08.093 -07 000000462 INF: MeasureProfile start
17-03-18 02:06:08.093 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:06:08.103 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:06:08.103 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:06:08.103 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:06:08.103 -07 000000462 INF: MeasureProfile done
17-03-18 02:06:08.103 -07 000000462 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:06:08.103 -07 000000462 INF: Autofocus finished
17-03-18 02:06:08.303 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:06:08.303 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:06:08.303 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.171794139690924. ----------
17-03-18 02:06:08.313 -07 000000610 INF: Cycle	95	Tile	19	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:06:08.313 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36060, sync = True, waitForSettling = True)
17-03-18 02:06:08.313 -07 000000610 INF: Z Motor: Moving to -0.165072 mm, started at -0.171794 mm, distance = 6.72 um
17-03-18 02:06:08.313 -07 000000610 INF: FPGA: Xmit ZDACW 36060\n [Z Motor]
17-03-18 02:06:08.313 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:06:08.323 -07 000000610 INF: FPGA: 'ZDACW 36060' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:06:08.323 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:06:08.323 -07 000000444 INF: FPGA: Recv ZDACR 36060
17-03-18 02:06:08.333 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:08.333 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:06:08.483 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:08.483 -07 000000569 INF: FPGA: Recv ZSGSRD 34983
17-03-18 02:06:08.493 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:08.493 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:08.493 -07 000000611 INF: FPGA: Recv ZSGSRD 34993
17-03-18 02:06:08.503 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:08.503 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:08.503 -07 000000444 INF: FPGA: Recv ZSGSRD 34992
17-03-18 02:06:08.513 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:08.513 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:08.513 -07 000000569 INF: FPGA: Recv ZSGSRD 34986
17-03-18 02:06:08.523 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:08.523 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:08.523 -07 000000444 INF: FPGA: Recv ZSGSRD 34985
17-03-18 02:06:08.533 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:08.533 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:08.533 -07 000000502 INF: FPGA: Recv ZSGSRD 34986
17-03-18 02:06:08.543 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:08.543 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:08.543 -07 000000444 INF: FPGA: Recv ZSGSRD 34987
17-03-18 02:06:08.553 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:08.573 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:08.573 -07 000000502 INF: FPGA: Recv ZSGSRD 34993
17-03-18 02:06:08.583 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:06:08.603 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:08.603 -07 000000512 INF: FPGA: Recv ZSGSRD 34986
17-03-18 02:06:08.613 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:06:08.633 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:08.633 -07 000000579 INF: FPGA: Recv ZSGSRD 34985
17-03-18 02:06:08.643 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:06:08.643 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:06:08.643 -07 000000611 INF: FPGA: Recv ZPIEZORD 30704
17-03-18 02:06:08.653 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:08.653 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.502 V. Piezo Error = -9.4 V.
17-03-18 02:06:08.653 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.1 um, Read 10 ADC samples: Avg = 34988 (-164.2 uncal um), Error = 0.8 uncal um, Median = 34986 (-164.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 34983 (-164.2 uncal um), Max = 34993 (-164.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:06:08.653 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34988, posNoise = 5, negNoise = 5
17-03-18 02:06:08.653 -07 000000610 INF: Z Motor: After move to -0.165072, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:06:08.653 -07 000000610 INF: Z Motor: MoveAbsStepped took 339 ms)
17-03-18 02:06:08.653 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:06:08.653 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:06:08.653 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:06:08.653 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:06:08.653 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:06:08.653 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:06:08.653 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:06:08.653 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:06:08.653 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:06:08.653 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:06:08.653 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:06:08.663 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:06:08.663 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:06:08.663 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:06:08.663 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:06:08.663 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:06:08.673 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:06:08.673 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:06:08.673 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:06:08.673 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:06:08.683 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36237 150\n [Camera]
17-03-18 02:06:08.873 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:06:08.883 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 3.996267,
17-03-18 02:06:09.273 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:06:09.273 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:06:09.273 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:06:09.273 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:06:09.273 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:06:09.273 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:06:09.273 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:06:09.273 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-18 02:06:09.283 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:06:09.283 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:06:09.463 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36237 778
17-03-18 02:06:09.613 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:06:09.663 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 02:06:09.663 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:06:09.663 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:09.663 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 02:06:09.663 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:06:09.663 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:09.673 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:06:09.673 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:06:09.673 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:06:09.673 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:06:09.803 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:06:09.803 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:06:09.803 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:06:09.803 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:06:09.803 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:06:09.803 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:06:09.803 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:06:09.803 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:06:09.803 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:06:09.803 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:06:09.993 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:06:09.993 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:06:10.003 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36237 150' command took 2 ms to send, 1309 ms to get response, and 1319 ms overall
17-03-18 02:06:10.213 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 02:06:10.213 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 02:06:10.213 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:10.213 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 02:06:10.213 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 02:06:10.213 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:10.213 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:06:10.223 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:06:10.223 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 02:06:10.223 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 02:06:10.223 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 02:06:10.263 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 02:06:10.263 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 02:06:10.303 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 02:06:10.303 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 02:06:10.303 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 02:06:10.303 -07 000000424 INF: FPGA: Recv EMCUR 
17-03-18 02:06:10.313 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:06:10.313 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 02:06:10.813 -07 000000461 INF: FPGA: Recv EMIN
17-03-18 02:06:10.813 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 495 ms to get response, and 502 ms overall
17-03-18 02:06:10.813 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 02:06:10.813 -07 000000502 INF: FPGA: Recv EMCUR 
17-03-18 02:06:10.823 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:06:10.823 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:06:10.823 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83203125, Z-Position -0.165093686427067. ------
17-03-18 02:06:10.823 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:06:10.823 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13995 mm
17-03-18 02:06:10.823 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:06:10.823 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 30572, sync = True, waitForSettling = False)
17-03-18 02:06:10.823 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:06:10.823 -07 000000455 INF: Z Motor: Moving to -0.139950 mm, started at -0.165094 mm, distance = 25.14 um
17-03-18 02:06:10.823 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 02:06:10.823 -07 000000461 INF: Y Motor: Moving to 59.9126 mm, started at 74.8320 mm, delta = -14.9194 mm
17-03-18 02:06:10.833 -07 000000455 INF: FPGA: Xmit ZDACW 30572\n [Z Motor]
17-03-18 02:06:10.833 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:06:10.833 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:06:10.843 -07 000000455 INF: FPGA: 'ZDACW 30572' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:06:10.843 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:10.843 -07 000000561 INF: FPGA: Recv YRDPOS 153257
17-03-18 02:06:10.853 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:06:10.853 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:06:10.853 -07 000000461 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:10.853 -07 000000461 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 02:06:10.853 -07 000000461 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 02:06:10.863 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:06:10.863 -07 000000611 INF: FPGA: Recv ZDACR 30572
17-03-18 02:06:10.873 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:06:10.873 -07 000000455 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 02:06:10.873 -07 000000461 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 02:06:11.053 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:06:11.053 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:06:11.473 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:06:11.473 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:06:12.503 -07 000000462 INF: FPGA: Recv YMVTO 122703 23903
17-03-18 02:06:12.503 -07 000000461 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1622 ms to get response, and 1647 ms overall
17-03-18 02:06:12.503 -07 000000461 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 02:06:12.503 -07 000000461 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-18 02:06:12.503 -07 000000461 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1647 ms, distance = 14.919 mm, average velocity = 9.059 mm/sec
17-03-18 02:06:14.263 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 4.011254,
17-03-18 02:06:15.353 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:15.353 -07 000000462 INF: FPGA: Recv YRDPOS 122699
17-03-18 02:06:15.363 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:06:15.363 -07 000000461 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:15.393 -07 000000461 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:06:15.393 -07 000000461 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -4 counts (-0.002 mm)
17-03-18 02:06:15.393 -07 000000461 INF: Y Motor: Moved to 59.9116 after 4569 ms
17-03-18 02:06:15.403 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139950 mm (DAC = 30572)
17-03-18 02:06:15.403 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:15.403 -07 000000569 INF: FPGA: Recv ZSGSRD 31073
17-03-18 02:06:15.413 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:06:15.413 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:15.413 -07 000000629 INF: FPGA: Recv ZSGSRD 31076
17-03-18 02:06:15.423 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:15.423 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:15.423 -07 000000569 INF: FPGA: Recv ZSGSRD 31073
17-03-18 02:06:15.433 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:15.433 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:15.433 -07 000000462 INF: FPGA: Recv ZSGSRD 31073
17-03-18 02:06:15.443 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:15.443 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:15.443 -07 000000569 INF: FPGA: Recv ZSGSRD 31071
17-03-18 02:06:15.453 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:15.453 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:15.453 -07 000000629 INF: FPGA: Recv ZSGSRD 31082
17-03-18 02:06:15.463 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:15.463 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:15.463 -07 000000462 INF: FPGA: Recv ZSGSRD 31078
17-03-18 02:06:15.473 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:15.473 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:15.473 -07 000000424 INF: FPGA: Recv ZSGSRD 31076
17-03-18 02:06:15.483 -07 000000579 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:15.483 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:15.483 -07 000000561 INF: FPGA: Recv ZSGSRD 31076
17-03-18 02:06:15.493 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:15.493 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:15.493 -07 000000455 INF: FPGA: Recv ZSGSRD 31077
17-03-18 02:06:15.503 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:15.503 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:06:15.503 -07 000000444 INF: FPGA: Recv ZPIEZORD 26629
17-03-18 02:06:15.513 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:15.513 -07 000000579 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.665 V. Piezo Error = -9.8 V.
17-03-18 02:06:15.513 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.9 um, Read 10 ADC samples: Avg = 31076 (-139.2 uncal um), Error = 0.8 uncal um, Median = 31076 (-139.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 31071 (-139.1 uncal um), Max = 31082 (-139.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:06:15.513 -07 000000579 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31076, posNoise = 6, negNoise = 5
17-03-18 02:06:15.513 -07 000000579 INF: Z Motor: After move to -0.139950, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:06:15.513 -07 000000579 INF: Z Motor: Settle wait time = 4573 ms, measure time = 109 ms (allowed 150 ms), total time = 4682 ms
17-03-18 02:06:15.513 -07 000000579 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:06:15.563 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4735 ms
17-03-18 02:06:15.563 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:06:15.563 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:06:15.563 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:06:15.563 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:06:15.563 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:06:15.563 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:06:15.563 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:06:15.563 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:06:15.563 -07 000000569 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 02:06:15.583 -07 000000569 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-18 02:06:15.583 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:06:15.583 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:06:15.583 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:06:15.593 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:06:15.593 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms.
17-03-18 02:06:15.593 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:06:15.643 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:06:15.942 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:06:15.942 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:06:15.942 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:06:15.942 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 02:06:15.982 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:06:15.982 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 02:06:15.982 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 385 ms overall
17-03-18 02:06:16.062 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:06:16.062 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:16.062 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:06:16.062 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:06:16.082 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:06:16.082 -07 000000629 INF: Image SNR check: start
17-03-18 02:06:16.082 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:06:16.092 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:06:16.092 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:06:16.102 -07 000000629 INF: Image SNR check: pass  [peak (Max-Min)=144.18]
17-03-18 02:06:16.102 -07 000000629 INF: Autofocus start
17-03-18 02:06:16.102 -07 000000629 INF: MeasureProfile start
17-03-18 02:06:16.112 -07 000000629 INF: MeasureProfile done
17-03-18 02:06:16.112 -07 000000629 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:06:16.112 -07 000000629 INF: Autofocus finished
17-03-18 02:06:16.292 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:06:16.292 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 02:06:16.292 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.139962168528498. ----------
17-03-18 02:06:16.292 -07 000000610 INF: Cycle	95	Tile	1	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:06:16.302 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29067, sync = True, waitForSettling = True)
17-03-18 02:06:16.302 -07 000000610 INF: Z Motor: Moving to -0.133060 mm, started at -0.139962 mm, distance = 6.90 um
17-03-18 02:06:16.302 -07 000000610 INF: FPGA: Xmit ZDACW 29067\n [Z Motor]
17-03-18 02:06:16.302 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:06:16.312 -07 000000610 INF: FPGA: 'ZDACW 29067' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:06:16.312 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:06:16.312 -07 000000461 INF: FPGA: Recv ZDACR 29067
17-03-18 02:06:16.322 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:16.322 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:06:16.472 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:16.472 -07 000000579 INF: FPGA: Recv ZSGSRD 30000
17-03-18 02:06:16.472 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:06:16.472 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:06:16.482 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:06:16.482 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:16.482 -07 000000512 INF: FPGA: Recv ZSGSRD 29998
17-03-18 02:06:16.492 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:16.492 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:16.492 -07 000000611 INF: FPGA: Recv ZSGSRD 30002
17-03-18 02:06:16.502 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:16.502 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:16.502 -07 000000461 INF: FPGA: Recv ZSGSRD 30006
17-03-18 02:06:16.512 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:16.512 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:16.512 -07 000000424 INF: FPGA: Recv ZSGSRD 30006
17-03-18 02:06:16.522 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:16.522 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:16.522 -07 000000611 INF: FPGA: Recv ZSGSRD 30005
17-03-18 02:06:16.532 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:16.532 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:16.532 -07 000000461 INF: FPGA: Recv ZSGSRD 29998
17-03-18 02:06:16.542 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:16.542 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:16.542 -07 000000444 INF: FPGA: Recv ZSGSRD 30002
17-03-18 02:06:16.552 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:16.552 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:16.552 -07 000000467 INF: FPGA: Recv ZSGSRD 30004
17-03-18 02:06:16.562 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:16.562 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:16.562 -07 000000455 INF: FPGA: Recv ZSGSRD 30001
17-03-18 02:06:16.572 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:16.572 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:06:16.572 -07 000000569 INF: FPGA: Recv ZPIEZORD 25473
17-03-18 02:06:16.582 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:16.582 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.435 V. Piezo Error = -9.9 V.
17-03-18 02:06:16.582 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30002 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30002 (-132.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29998 (-132.3 uncal um), Max = 30006 (-132.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:06:16.582 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30002, posNoise = 4, negNoise = 4
17-03-18 02:06:16.582 -07 000000610 INF: Z Motor: After move to -0.133060, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:06:16.582 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:06:16.582 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:06:16.582 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:06:16.582 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:06:16.582 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:06:16.582 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:06:16.582 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:06:16.582 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:06:16.582 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:06:16.582 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:06:16.582 -07 000000629 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 02:06:16.582 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 4 ms.
17-03-18 02:06:16.582 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:06:16.592 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:06:16.592 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:06:16.602 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 02:06:16.602 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:06:16.612 -07 000000629 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 02:06:16.612 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:06:16.612 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:06:16.612 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:06:16.622 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:06:16.622 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 36 ms.
17-03-18 02:06:16.622 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 29244 150\n [Camera]
17-03-18 02:06:16.822 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:06:17.212 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:06:17.212 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:06:17.212 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:06:17.212 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:06:17.212 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:06:17.212 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:06:17.212 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:06:17.212 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:06:17.212 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:06:17.222 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:06:17.402 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29244 778
17-03-18 02:06:17.552 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:06:17.612 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:06:17.612 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:06:17.612 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:17.612 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 02:06:17.612 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:06:17.612 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:17.612 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:06:17.612 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:06:17.612 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:06:17.622 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 02:06:17.742 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:06:17.742 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:06:17.742 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:06:17.742 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:06:17.742 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:06:17.752 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:06:17.752 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:06:17.752 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:06:17.752 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:06:17.752 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:06:17.932 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:06:17.942 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:06:17.942 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 29244 150' command took 2 ms to send, 1312 ms to get response, and 1319 ms overall
17-03-18 02:06:17.942 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:06:17.942 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91162109375, Z-Position -0.133062564688247. ------
17-03-18 02:06:17.942 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:06:17.942 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13930 mm
17-03-18 02:06:17.942 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:06:17.942 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30430, sync = True, waitForSettling = False)
17-03-18 02:06:17.952 -07 000000502 INF: Z Motor: Moving to -0.139300 mm, started at -0.133063 mm, distance = -6.24 um
17-03-18 02:06:17.952 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:06:17.952 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:06:17.952 -07 000000502 INF: FPGA: Xmit ZDACW 30430\n [Z Motor]
17-03-18 02:06:17.952 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 02:06:17.952 -07 000000455 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-18 02:06:18.062 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:18.062 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:06:18.062 -07 000000502 INF: FPGA: 'ZDACW 30430' command took 0 ms to send, 0 ms to get response, and 116 ms overall
17-03-18 02:06:18.062 -07 000000576 INF: FPGA: Recv YRDPOS 122699
17-03-18 02:06:18.072 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 118 ms overall
17-03-18 02:06:18.072 -07 000000455 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:18.072 -07 000000455 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:06:18.072 -07 000000455 INF: Y Motor: Moving 1330 steps2
17-03-18 02:06:18.072 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:06:18.082 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:06:18.082 -07 000000629 INF: FPGA: Recv ZDACR 30430
17-03-18 02:06:18.092 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:06:18.092 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:06:18.092 -07 000000502 INF: Z Motor: MoveAbsStepped took 140 ms (did NOT wait for settling yet))
17-03-18 02:06:18.142 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:06:18.142 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:06:18.142 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:18.142 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 02:06:18.142 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:06:18.142 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:18.152 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:06:18.152 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:06:18.152 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:06:18.162 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 02:06:18.272 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:06:18.272 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 322 ms overall
17-03-18 02:06:18.462 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 02:06:18.462 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:06:18.502 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:18.502 -07 000000512 INF: FPGA: Recv YRDPOS 124382
17-03-18 02:06:18.512 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:06:18.512 -07 000000455 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:18.512 -07 000000455 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:06:18.512 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.831 mm, average velocity = 2.088 mm/sec
17-03-18 02:06:19.462 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:19.462 -07 000000629 INF: FPGA: Recv YRDPOS 124383
17-03-18 02:06:19.472 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:06:19.472 -07 000000455 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:19.492 -07 000000455 INF: Y Motor: After move to 60.742607, error = -0.008720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:06:19.492 -07 000000455 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:06:19.492 -07 000000455 INF: Y Motor: Moved to 60.7339 after 1547 ms (table move)
17-03-18 02:06:19.502 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139300 mm (DAC = 30430)
17-03-18 02:06:19.502 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:19.502 -07 000000444 INF: FPGA: Recv ZSGSRD 30972
17-03-18 02:06:19.512 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:06:19.512 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:19.512 -07 000000455 INF: FPGA: Recv ZSGSRD 30972
17-03-18 02:06:19.522 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:19.522 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:19.522 -07 000000512 INF: FPGA: Recv ZSGSRD 30976
17-03-18 02:06:19.532 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:19.532 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:19.532 -07 000000455 INF: FPGA: Recv ZSGSRD 30976
17-03-18 02:06:19.542 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:19.542 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:19.542 -07 000000512 INF: FPGA: Recv ZSGSRD 30984
17-03-18 02:06:19.552 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:19.552 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:19.552 -07 000000455 INF: FPGA: Recv ZSGSRD 30970
17-03-18 02:06:19.562 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:19.562 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:19.562 -07 000000611 INF: FPGA: Recv ZSGSRD 30976
17-03-18 02:06:19.572 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:19.572 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:19.572 -07 000000444 INF: FPGA: Recv ZSGSRD 30972
17-03-18 02:06:19.582 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:19.582 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:19.582 -07 000000512 INF: FPGA: Recv ZSGSRD 30973
17-03-18 02:06:19.592 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:19.592 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:19.592 -07 000000444 INF: FPGA: Recv ZSGSRD 30981
17-03-18 02:06:19.602 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:19.602 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:06:19.602 -07 000000512 INF: FPGA: Recv ZPIEZORD 26755
17-03-18 02:06:19.612 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:19.612 -07 000000461 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.643 V. Piezo Error = -9.3 V.
17-03-18 02:06:19.612 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30975 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30974 (-138.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30970 (-138.5 uncal um), Max = 30984 (-138.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:06:19.612 -07 000000461 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30975, posNoise = 9, negNoise = 5
17-03-18 02:06:19.612 -07 000000461 INF: Z Motor: After move to -0.139300, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:06:19.612 -07 000000461 INF: Z Motor: Settle wait time = 1550 ms, measure time = 110 ms (allowed 150 ms), total time = 1660 ms
17-03-18 02:06:19.612 -07 000000461 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:06:19.632 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 4.009895,
17-03-18 02:06:19.652 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1703 ms
17-03-18 02:06:19.652 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:06:19.652 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:06:19.652 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:06:19.652 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:06:19.652 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:06:19.652 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:06:19.652 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:06:19.652 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:06:19.652 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:06:19.662 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:06:19.662 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:06:19.672 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:06:19.672 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:06:19.672 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:06:19.712 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:06:20.012 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:06:20.012 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:06:20.012 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:06:20.022 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:06:20.052 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:06:20.052 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 02:06:20.052 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 02:06:20.142 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:06:20.142 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:20.142 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:06:20.142 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:06:20.252 -07 000000590 INF: Autofocus start
17-03-18 02:06:20.252 -07 000000590 INF: MeasureProfile start
17-03-18 02:06:20.252 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:06:20.252 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:06:20.262 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:06:20.262 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:06:20.262 -07 000000590 INF: MeasureProfile done
17-03-18 02:06:20.262 -07 000000590 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:06:20.262 -07 000000590 INF: Autofocus finished
17-03-18 02:06:20.462 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:06:20.462 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:06:20.462 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73388671875, Z-position -0.139313323102181. ----------
17-03-18 02:06:20.462 -07 000000610 INF: Cycle	95	Tile	2	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:06:20.472 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28925, sync = True, waitForSettling = True)
17-03-18 02:06:20.472 -07 000000610 INF: Z Motor: Moving to -0.132410 mm, started at -0.139313 mm, distance = 6.90 um
17-03-18 02:06:20.472 -07 000000610 INF: FPGA: Xmit ZDACW 28925\n [Z Motor]
17-03-18 02:06:20.472 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:06:20.482 -07 000000610 INF: FPGA: 'ZDACW 28925' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:06:20.482 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:06:20.482 -07 000000461 INF: FPGA: Recv ZDACR 28925
17-03-18 02:06:20.492 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:20.492 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:06:20.642 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:20.642 -07 000000462 INF: FPGA: Recv ZSGSRD 29902
17-03-18 02:06:20.652 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:06:20.652 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:20.652 -07 000000461 INF: FPGA: Recv ZSGSRD 29902
17-03-18 02:06:20.662 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:20.662 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:20.662 -07 000000455 INF: FPGA: Recv ZSGSRD 29897
17-03-18 02:06:20.672 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:20.672 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:20.672 -07 000000462 INF: FPGA: Recv ZSGSRD 29906
17-03-18 02:06:20.682 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:20.682 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:20.682 -07 000000461 INF: FPGA: Recv ZSGSRD 29899
17-03-18 02:06:20.692 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:20.692 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:20.692 -07 000000462 INF: FPGA: Recv ZSGSRD 29900
17-03-18 02:06:20.702 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:20.702 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:20.702 -07 000000455 INF: FPGA: Recv ZSGSRD 29906
17-03-18 02:06:20.712 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:20.712 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:20.712 -07 000000462 INF: FPGA: Recv ZSGSRD 29903
17-03-18 02:06:20.722 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:20.722 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:20.722 -07 000000461 INF: FPGA: Recv ZSGSRD 29904
17-03-18 02:06:20.732 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:20.732 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:20.732 -07 000000462 INF: FPGA: Recv ZSGSRD 29894
17-03-18 02:06:20.742 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:20.742 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:06:20.742 -07 000000455 INF: FPGA: Recv ZPIEZORD 25397
17-03-18 02:06:20.752 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:20.752 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.414 V. Piezo Error = -9.9 V.
17-03-18 02:06:20.752 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29901 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29902 (-131.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29894 (-131.6 uncal um), Max = 29906 (-131.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:06:20.752 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29901, posNoise = 5, negNoise = 7
17-03-18 02:06:20.752 -07 000000610 INF: Z Motor: After move to -0.132410, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:06:20.752 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:06:20.752 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:06:20.752 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:06:20.752 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:06:20.752 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:06:20.752 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:06:20.752 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:06:20.752 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:06:20.752 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:06:20.752 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:06:20.752 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:06:20.752 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:06:20.752 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:06:20.762 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:06:20.762 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:06:20.762 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:06:20.762 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:06:20.782 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-18 02:06:20.782 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 02:06:20.782 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 18 ms.
17-03-18 02:06:20.782 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 02:06:20.782 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 29102 150\n [Camera]
17-03-18 02:06:20.982 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:06:21.372 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:06:21.372 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:06:21.372 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:06:21.382 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:06:21.382 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:06:21.382 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:06:21.382 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:06:21.382 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-18 02:06:21.382 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:06:21.382 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:06:21.472 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:06:21.472 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:06:21.572 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29102 778
17-03-18 02:06:21.712 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:06:21.772 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 02:06:21.772 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:06:21.772 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:21.782 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:06:21.782 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:06:21.782 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 02:06:21.782 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:06:21.782 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:21.782 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:06:21.792 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:06:21.902 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:06:21.902 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:06:21.912 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:06:21.912 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:06:21.912 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:06:21.912 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:06:21.912 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:06:21.912 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:06:21.912 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:06:21.912 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:06:22.102 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:06:22.102 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:06:22.102 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 29102 150' command took 2 ms to send, 1315 ms to get response, and 1320 ms overall
17-03-18 02:06:22.102 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:06:22.102 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73388671875, Z-Position -0.132413719261929. ------
17-03-18 02:06:22.112 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:06:22.112 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13907 mm
17-03-18 02:06:22.112 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:06:22.232 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:06:22.232 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 121 ms overall
17-03-18 02:06:22.232 -07 000000430 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:06:22.232 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30380, sync = True, waitForSettling = False)
17-03-18 02:06:22.232 -07 000000502 INF: Z Motor: Moving to -0.139071 mm, started at -0.132414 mm, distance = -6.66 um
17-03-18 02:06:22.232 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 02:06:22.232 -07 000000576 INF: Y Motor: Moving to 61.5726 mm, started at 60.7339 mm, delta = 0.8387 mm
17-03-18 02:06:22.242 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:22.242 -07 000000512 INF: FPGA: Recv YRDPOS 124383
17-03-18 02:06:22.252 -07 000000502 INF: FPGA: Xmit ZDACW 30380\n [Z Motor]
17-03-18 02:06:22.252 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:06:22.252 -07 000000576 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:22.252 -07 000000576 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:06:22.252 -07 000000576 INF: Y Motor: Moving 1342 steps-19
17-03-18 02:06:22.252 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 02:06:22.262 -07 000000502 INF: FPGA: 'ZDACW 30380' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:06:22.262 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:06:22.262 -07 000000611 INF: FPGA: Recv ZDACR 30380
17-03-18 02:06:22.272 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:22.272 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:06:22.272 -07 000000502 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 02:06:22.312 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:06:22.312 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:06:22.312 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:22.312 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:06:22.312 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:06:22.322 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:22.322 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:06:22.322 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 02:06:22.322 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:06:22.332 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 02:06:22.432 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:06:22.432 -07 000000430 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 02:06:22.642 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 02:06:22.642 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:06:22.692 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:22.692 -07 000000430 INF: FPGA: Recv YRDPOS 126084
17-03-18 02:06:22.702 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:06:22.702 -07 000000576 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:22.702 -07 000000576 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 02:06:22.702 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-18 02:06:23.652 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:23.652 -07 000000467 INF: FPGA: Recv YRDPOS 126084
17-03-18 02:06:23.662 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:23.662 -07 000000576 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:23.682 -07 000000576 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:06:23.682 -07 000000576 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:06:23.682 -07 000000576 INF: Y Motor: Moved to 61.5645 after 1455 ms (table move)
17-03-18 02:06:23.692 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139071 mm (DAC = 30380)
17-03-18 02:06:23.692 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:23.692 -07 000000430 INF: FPGA: Recv ZSGSRD 30933
17-03-18 02:06:23.702 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:06:23.702 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:23.702 -07 000000629 INF: FPGA: Recv ZSGSRD 30930
17-03-18 02:06:23.712 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:23.712 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:23.712 -07 000000512 INF: FPGA: Recv ZSGSRD 30944
17-03-18 02:06:23.722 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:23.722 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:23.722 -07 000000611 INF: FPGA: Recv ZSGSRD 30939
17-03-18 02:06:23.732 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:23.732 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:23.732 -07 000000430 INF: FPGA: Recv ZSGSRD 30942
17-03-18 02:06:23.742 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:23.742 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:23.742 -07 000000569 INF: FPGA: Recv ZSGSRD 30944
17-03-18 02:06:23.752 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:23.752 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:23.752 -07 000000502 INF: FPGA: Recv ZSGSRD 30925
17-03-18 02:06:23.762 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:23.762 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:23.762 -07 000000611 INF: FPGA: Recv ZSGSRD 30930
17-03-18 02:06:23.772 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:23.772 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:23.772 -07 000000430 INF: FPGA: Recv ZSGSRD 30937
17-03-18 02:06:23.782 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:23.782 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:23.782 -07 000000576 INF: FPGA: Recv ZSGSRD 30941
17-03-18 02:06:23.792 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:23.792 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:06:23.792 -07 000000502 INF: FPGA: Recv ZPIEZORD 26802
17-03-18 02:06:23.802 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:23.802 -07 000000455 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.636 V. Piezo Error = -9.1 V.
17-03-18 02:06:23.802 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30936 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30938 (-138.3 uncal um), StdDev = 7 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30925 (-138.2 uncal um), Max = 30944 (-138.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 02:06:23.802 -07 000000455 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30936, posNoise = 8, negNoise = 11
17-03-18 02:06:23.802 -07 000000455 INF: Z Motor: After move to -0.139071, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:06:23.802 -07 000000455 INF: Z Motor: Settle wait time = 1459 ms, measure time = 109 ms (allowed 150 ms), total time = 1568 ms
17-03-18 02:06:23.802 -07 000000455 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:06:23.852 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1739 ms
17-03-18 02:06:23.852 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:06:23.852 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:06:23.852 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:06:23.852 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:06:23.852 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:06:23.852 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:06:23.852 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:06:23.862 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:06:23.862 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:06:23.862 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:06:23.862 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:06:23.862 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:06:23.872 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:06:23.882 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:06:23.932 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:06:24.222 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:06:24.222 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:06:24.232 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:06:24.232 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:06:24.262 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:06:24.262 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 02:06:24.272 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-18 02:06:24.342 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:06:24.342 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:24.342 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:06:24.342 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:06:24.372 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:06:24.372 -07 000000611 INF: Autofocus start
17-03-18 02:06:24.372 -07 000000611 INF: MeasureProfile start
17-03-18 02:06:24.372 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:06:24.382 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:06:24.382 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:06:24.382 -07 000000611 INF: MeasureProfile done
17-03-18 02:06:24.382 -07 000000611 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:06:24.382 -07 000000611 INF: Autofocus finished
17-03-18 02:06:24.582 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:06:24.582 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:06:24.582 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.139062778828652. ----------
17-03-18 02:06:24.592 -07 000000610 INF: Cycle	95	Tile	3	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:06:24.592 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28904, sync = True, waitForSettling = True)
17-03-18 02:06:24.592 -07 000000610 INF: Z Motor: Moving to -0.132314 mm, started at -0.139063 mm, distance = 6.75 um
17-03-18 02:06:24.592 -07 000000610 INF: FPGA: Xmit ZDACW 28904\n [Z Motor]
17-03-18 02:06:24.592 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 02:06:24.602 -07 000000610 INF: FPGA: 'ZDACW 28904' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:06:24.602 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:06:24.602 -07 000000561 INF: FPGA: Recv ZDACR 28904
17-03-18 02:06:24.612 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:24.612 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:06:24.762 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:24.762 -07 000000629 INF: FPGA: Recv ZSGSRD 29883
17-03-18 02:06:24.772 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:06:24.772 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:24.772 -07 000000467 INF: FPGA: Recv ZSGSRD 29891
17-03-18 02:06:24.782 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:24.782 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:24.782 -07 000000611 INF: FPGA: Recv ZSGSRD 29886
17-03-18 02:06:24.792 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:24.792 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:24.792 -07 000000430 INF: FPGA: Recv ZSGSRD 29886
17-03-18 02:06:24.802 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:24.802 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:24.802 -07 000000569 INF: FPGA: Recv ZSGSRD 29877
17-03-18 02:06:24.812 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:24.812 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:24.812 -07 000000461 INF: FPGA: Recv ZSGSRD 29883
17-03-18 02:06:24.822 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:24.822 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:24.822 -07 000000579 INF: FPGA: Recv ZSGSRD 29894
17-03-18 02:06:24.832 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:24.832 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:24.832 -07 000000590 INF: FPGA: Recv ZSGSRD 29885
17-03-18 02:06:24.842 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:24.842 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:24.842 -07 000000502 INF: FPGA: Recv ZSGSRD 29887
17-03-18 02:06:24.852 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:24.852 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:24.852 -07 000000579 INF: FPGA: Recv ZSGSRD 29890
17-03-18 02:06:24.862 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:24.862 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:06:24.862 -07 000000502 INF: FPGA: Recv ZPIEZORD 25423
17-03-18 02:06:24.872 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:24.872 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.410 V. Piezo Error = -9.8 V.
17-03-18 02:06:24.872 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29886 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29886 (-131.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29877 (-131.5 uncal um), Max = 29894 (-131.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:06:24.872 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29886, posNoise = 8, negNoise = 9
17-03-18 02:06:24.872 -07 000000610 INF: Z Motor: After move to -0.132314, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:06:24.872 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:06:24.872 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:06:24.872 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:06:24.872 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:06:24.872 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:06:24.872 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:06:24.872 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:06:24.872 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:06:24.872 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:06:24.872 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:06:24.872 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:06:24.872 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:06:24.872 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:06:24.882 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:06:24.882 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:06:24.882 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:06:24.882 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:06:24.892 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:06:24.892 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 02:06:24.892 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:06:24.892 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:06:24.892 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 29081 150\n [Camera]
17-03-18 02:06:25.012 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 4.009895,
17-03-18 02:06:25.092 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:06:25.482 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:06:25.482 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:06:25.482 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:06:25.492 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:06:25.492 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:06:25.492 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:06:25.492 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:06:25.492 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-18 02:06:25.492 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:06:25.492 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:06:25.682 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29081 778
17-03-18 02:06:25.832 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:06:25.882 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 02:06:25.882 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:06:25.882 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:25.882 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 02:06:25.882 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:06:25.882 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:25.882 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:06:25.882 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:06:25.892 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:06:25.892 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 02:06:26.022 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:06:26.022 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:06:26.022 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:06:26.022 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:06:26.022 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:06:26.022 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:06:26.022 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:06:26.022 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 02:06:26.022 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:06:26.022 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:06:26.212 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:06:26.212 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:06:26.212 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 29081 150' command took 2 ms to send, 1312 ms to get response, and 1316 ms overall
17-03-18 02:06:26.212 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:06:26.212 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.564453125, Z-Position -0.132317356079803. ------
17-03-18 02:06:26.212 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:06:26.212 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13868 mm
17-03-18 02:06:26.212 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:06:26.222 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:06:26.222 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:06:26.222 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:06:26.222 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 02:06:26.222 -07 000000606 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-18 02:06:26.222 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 30295, sync = True, waitForSettling = False)
17-03-18 02:06:26.222 -07 000000611 INF: Z Motor: Moving to -0.138682 mm, started at -0.132317 mm, distance = -6.36 um
17-03-18 02:06:26.232 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:26.232 -07 000000467 INF: FPGA: Recv YRDPOS 126085
17-03-18 02:06:26.242 -07 000000611 INF: FPGA: Xmit ZDACW 30295\n [Z Motor]
17-03-18 02:06:26.242 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 02:06:26.242 -07 000000606 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:26.242 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:06:26.242 -07 000000606 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:06:26.242 -07 000000606 INF: Y Motor: Moving 1340 steps-17
17-03-18 02:06:26.252 -07 000000611 INF: FPGA: 'ZDACW 30295' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:06:26.252 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:06:26.252 -07 000000444 INF: FPGA: Recv ZDACR 30295
17-03-18 02:06:26.262 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:06:26.262 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:26.262 -07 000000611 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 02:06:26.412 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 02:06:26.412 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:06:26.412 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:26.412 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:06:26.422 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:06:26.422 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:06:26.422 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:26.422 -07 000000430 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:06:26.422 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 02:06:26.422 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:06:26.422 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:06:26.422 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:06:26.472 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:06:26.472 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:06:26.632 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 02:06:26.632 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 02:06:26.682 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:26.682 -07 000000502 INF: FPGA: Recv YRDPOS 127787
17-03-18 02:06:26.692 -07 000000606 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:06:26.692 -07 000000606 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:26.692 -07 000000606 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 02:06:26.692 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.838 mm, average velocity = 2.138 mm/sec
17-03-18 02:06:27.641 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:27.641 -07 000000502 INF: FPGA: Recv YRDPOS 127788
17-03-18 02:06:27.651 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:27.651 -07 000000606 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:27.671 -07 000000606 INF: Y Motor: After move to 62.402607, error = -0.006123, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:06:27.671 -07 000000606 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:06:27.671 -07 000000606 INF: Y Motor: Moved to 62.3965 after 1453 ms (table move)
17-03-18 02:06:27.681 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138682 mm (DAC = 30295)
17-03-18 02:06:27.681 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:27.681 -07 000000461 INF: FPGA: Recv ZSGSRD 30883
17-03-18 02:06:27.691 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:27.691 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:27.691 -07 000000444 INF: FPGA: Recv ZSGSRD 30881
17-03-18 02:06:27.701 -07 000000455 INF: FPGA: 'ZSGSRD' command took 6 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:27.701 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:27.701 -07 000000512 INF: FPGA: Recv ZSGSRD 30869
17-03-18 02:06:27.711 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:27.711 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:27.711 -07 000000606 INF: FPGA: Recv ZSGSRD 30878
17-03-18 02:06:27.721 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:27.721 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:27.721 -07 000000461 INF: FPGA: Recv ZSGSRD 30881
17-03-18 02:06:27.731 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:27.731 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:27.731 -07 000000444 INF: FPGA: Recv ZSGSRD 30878
17-03-18 02:06:27.741 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:27.741 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:27.741 -07 000000512 INF: FPGA: Recv ZSGSRD 30887
17-03-18 02:06:27.751 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:27.751 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:27.751 -07 000000444 INF: FPGA: Recv ZSGSRD 30874
17-03-18 02:06:27.761 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:27.761 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:27.761 -07 000000502 INF: FPGA: Recv ZSGSRD 30874
17-03-18 02:06:27.771 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:27.771 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:27.771 -07 000000444 INF: FPGA: Recv ZSGSRD 30884
17-03-18 02:06:27.781 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:27.781 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:06:27.781 -07 000000467 INF: FPGA: Recv ZPIEZORD 26736
17-03-18 02:06:27.791 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:27.791 -07 000000455 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.623 V. Piezo Error = -9.1 V.
17-03-18 02:06:27.791 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30879 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30880 (-137.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30869 (-137.8 uncal um), Max = 30887 (-137.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 02:06:27.791 -07 000000455 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30879, posNoise = 8, negNoise = 10
17-03-18 02:06:27.791 -07 000000455 INF: Z Motor: After move to -0.138682, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:06:27.791 -07 000000455 INF: Z Motor: Settle wait time = 1456 ms, measure time = 111 ms (allowed 150 ms), total time = 1567 ms
17-03-18 02:06:27.791 -07 000000455 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 02:06:27.831 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 02:06:27.831 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:06:27.831 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:06:27.831 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:06:27.831 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:06:27.831 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:06:27.831 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:06:27.831 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:06:27.831 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:06:27.831 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:06:27.841 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:06:27.841 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:06:27.841 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:06:27.841 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:06:27.851 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:06:27.891 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:06:28.191 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:06:28.191 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:06:28.191 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:06:28.191 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-18 02:06:28.231 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:06:28.231 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 02:06:28.231 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:06:28.311 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:06:28.311 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:28.311 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:06:28.311 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:06:28.331 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:06:28.331 -07 000000461 INF: Autofocus start
17-03-18 02:06:28.331 -07 000000461 INF: MeasureProfile start
17-03-18 02:06:28.331 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:06:28.341 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:06:28.341 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:06:28.351 -07 000000461 INF: MeasureProfile done
17-03-18 02:06:28.351 -07 000000461 INF: X=32  Z correction [um]=0.1299841
17-03-18 02:06:28.351 -07 000000461 INF: Autofocus finished
17-03-18 02:06:28.541 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:06:28.541 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 02:06:28.551 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.396484375, Z-position -0.138696598736572. ----------
17-03-18 02:06:28.551 -07 000000610 INF: Cycle	95	Tile	4	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:06:28.551 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28836, sync = True, waitForSettling = True)
17-03-18 02:06:28.551 -07 000000610 INF: Z Motor: Moving to -0.132003 mm, started at -0.138697 mm, distance = 6.69 um
17-03-18 02:06:28.551 -07 000000610 INF: FPGA: Xmit ZDACW 28836\n [Z Motor]
17-03-18 02:06:28.551 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:06:28.561 -07 000000610 INF: FPGA: 'ZDACW 28836' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:06:28.561 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:06:28.561 -07 000000430 INF: FPGA: Recv ZDACR 28836
17-03-18 02:06:28.571 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:28.571 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:06:28.721 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:28.721 -07 000000611 INF: FPGA: Recv ZSGSRD 29839
17-03-18 02:06:28.731 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:06:28.731 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:28.731 -07 000000467 INF: FPGA: Recv ZSGSRD 29838
17-03-18 02:06:28.741 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:28.741 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:28.741 -07 000000502 INF: FPGA: Recv ZSGSRD 29840
17-03-18 02:06:28.751 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:06:28.751 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:28.751 -07 000000455 INF: FPGA: Recv ZSGSRD 29837
17-03-18 02:06:28.761 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:28.761 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:28.761 -07 000000502 INF: FPGA: Recv ZSGSRD 29837
17-03-18 02:06:28.771 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:28.771 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:28.771 -07 000000461 INF: FPGA: Recv ZSGSRD 29845
17-03-18 02:06:28.781 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:28.781 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:28.781 -07 000000502 INF: FPGA: Recv ZSGSRD 29845
17-03-18 02:06:28.791 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:28.791 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:28.791 -07 000000512 INF: FPGA: Recv ZSGSRD 29843
17-03-18 02:06:28.801 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:28.801 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:28.801 -07 000000579 INF: FPGA: Recv ZSGSRD 29835
17-03-18 02:06:28.811 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:28.811 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:28.811 -07 000000569 INF: FPGA: Recv ZSGSRD 29836
17-03-18 02:06:28.821 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:28.821 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:06:28.821 -07 000000611 INF: FPGA: Recv ZPIEZORD 25356
17-03-18 02:06:28.831 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:28.831 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.400 V. Piezo Error = -9.8 V.
17-03-18 02:06:28.831 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29840 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29838 (-131.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29835 (-131.2 uncal um), Max = 29845 (-131.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:06:28.831 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29840, posNoise = 5, negNoise = 5
17-03-18 02:06:28.831 -07 000000610 INF: Z Motor: After move to -0.132003, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:06:28.831 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 02:06:28.831 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:06:28.831 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:06:28.831 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:06:28.831 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:06:28.831 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:06:28.831 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:06:28.831 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:06:28.831 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:06:28.831 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:06:28.831 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:06:28.831 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:06:28.831 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:06:28.841 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:06:28.841 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:06:28.841 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:06:28.841 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:06:28.851 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:06:28.851 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:06:28.851 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:06:28.851 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:06:28.851 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 29013 150\n [Camera]
17-03-18 02:06:29.051 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:06:29.441 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:06:29.441 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:06:29.441 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:06:29.441 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:06:29.441 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:06:29.451 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:06:29.451 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:06:29.451 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:06:29.451 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:06:29.451 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:06:29.631 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29013 778
17-03-18 02:06:29.781 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:06:29.831 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 02:06:29.831 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:06:29.831 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:29.841 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:06:29.841 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:06:29.841 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:06:29.841 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:29.841 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:06:29.841 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:06:29.841 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:06:29.971 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:06:29.971 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:06:29.971 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:06:29.981 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:06:29.981 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:06:29.981 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:06:29.981 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:06:29.981 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:06:29.981 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:06:29.981 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:06:30.171 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:06:30.171 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:06:30.171 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 29013 150' command took 2 ms to send, 1310 ms to get response, and 1317 ms overall
17-03-18 02:06:30.171 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:06:30.171 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.396484375, Z-Position -0.132021842321282. ------
17-03-18 02:06:30.171 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:06:30.171 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13883 mm
17-03-18 02:06:30.291 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:06:30.291 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:06:30.301 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 124 ms overall
17-03-18 02:06:30.301 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 02:06:30.301 -07 000000467 INF: Y Motor: Moving to 63.2326 mm, started at 62.3965 mm, delta = 0.8361 mm
17-03-18 02:06:30.301 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:06:30.301 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 30328, sync = True, waitForSettling = False)
17-03-18 02:06:30.301 -07 000000444 INF: Z Motor: Moving to -0.138833 mm, started at -0.132022 mm, distance = -6.81 um
17-03-18 02:06:30.311 -07 000000444 INF: FPGA: Xmit ZDACW 30328\n [Z Motor]
17-03-18 02:06:30.311 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:06:30.321 -07 000000444 INF: FPGA: 'ZDACW 30328' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:06:30.321 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:30.321 -07 000000424 INF: FPGA: Recv YRDPOS 127788
17-03-18 02:06:30.331 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:06:30.331 -07 000000467 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:30.331 -07 000000467 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:06:30.331 -07 000000467 INF: Y Motor: Moving 1338 steps-14
17-03-18 02:06:30.331 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:06:30.331 -07 000000629 INF: FPGA: Recv ZDACR 30328
17-03-18 02:06:30.341 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:06:30.341 -07 000000444 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 02:06:30.341 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:06:30.371 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 4.016692,
17-03-18 02:06:30.381 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:06:30.381 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:06:30.381 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:30.381 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:06:30.381 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:06:30.381 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:30.381 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:06:30.381 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:06:30.381 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:06:30.391 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:06:30.501 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:06:30.501 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 02:06:30.721 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 02:06:30.721 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 390 ms overall
17-03-18 02:06:30.761 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:30.761 -07 000000606 INF: FPGA: Recv YRDPOS 129484
17-03-18 02:06:30.771 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:06:30.771 -07 000000467 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:30.771 -07 000000467 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 02:06:30.771 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.836 mm, average velocity = 2.144 mm/sec
17-03-18 02:06:31.471 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:06:31.471 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:06:31.721 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:31.721 -07 000000591 INF: FPGA: Recv YRDPOS 129485
17-03-18 02:06:31.731 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:31.731 -07 000000467 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:31.751 -07 000000467 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:06:31.751 -07 000000467 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:06:31.751 -07 000000467 INF: Y Motor: Moved to 63.2251 after 1457 ms (table move)
17-03-18 02:06:31.761 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138833 mm (DAC = 30328)
17-03-18 02:06:31.761 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:31.761 -07 000000444 INF: FPGA: Recv ZSGSRD 30909
17-03-18 02:06:31.771 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:06:31.771 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:31.771 -07 000000591 INF: FPGA: Recv ZSGSRD 30904
17-03-18 02:06:31.781 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:31.781 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:31.781 -07 000000512 INF: FPGA: Recv ZSGSRD 30890
17-03-18 02:06:31.791 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:31.791 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:31.791 -07 000000579 INF: FPGA: Recv ZSGSRD 30894
17-03-18 02:06:31.801 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:31.801 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:31.801 -07 000000590 INF: FPGA: Recv ZSGSRD 30906
17-03-18 02:06:31.811 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:06:31.811 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:31.811 -07 000000424 INF: FPGA: Recv ZSGSRD 30904
17-03-18 02:06:31.821 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:31.821 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:31.821 -07 000000502 INF: FPGA: Recv ZSGSRD 30909
17-03-18 02:06:31.831 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:31.831 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:31.831 -07 000000561 INF: FPGA: Recv ZSGSRD 30900
17-03-18 02:06:31.841 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:31.841 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:31.841 -07 000000590 INF: FPGA: Recv ZSGSRD 30904
17-03-18 02:06:31.851 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:31.851 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:31.851 -07 000000579 INF: FPGA: Recv ZSGSRD 30905
17-03-18 02:06:31.861 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:31.861 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:06:31.861 -07 000000590 INF: FPGA: Recv ZPIEZORD 26768
17-03-18 02:06:31.871 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:31.871 -07 000000455 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.628 V. Piezo Error = -9.1 V.
17-03-18 02:06:31.871 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30902 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30904 (-138.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30890 (-138.0 uncal um), Max = 30909 (-138.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-18 02:06:31.871 -07 000000455 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30902, posNoise = 7, negNoise = 12
17-03-18 02:06:31.871 -07 000000455 INF: Z Motor: After move to -0.138833, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:06:31.871 -07 000000455 INF: Z Motor: Settle wait time = 1460 ms, measure time = 109 ms (allowed 150 ms), total time = 1569 ms
17-03-18 02:06:31.871 -07 000000455 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:06:31.921 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1744 ms
17-03-18 02:06:31.921 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:06:31.921 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:06:31.921 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:06:31.921 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:06:31.921 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:06:31.921 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:06:31.921 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:06:31.921 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:06:31.921 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:06:31.931 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:06:31.931 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:06:31.931 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:06:31.931 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:06:31.941 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:06:31.981 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:06:32.281 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:06:32.281 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:06:32.281 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:06:32.291 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:06:32.321 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:06:32.321 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 02:06:32.321 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 386 ms overall
17-03-18 02:06:32.401 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:06:32.401 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:32.401 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:06:32.401 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:06:32.421 -07 000000461 INF: Autofocus start
17-03-18 02:06:32.421 -07 000000461 INF: MeasureProfile start
17-03-18 02:06:32.421 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:06:32.421 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:06:32.431 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:06:32.431 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:06:32.431 -07 000000461 INF: MeasureProfile done
17-03-18 02:06:32.431 -07 000000461 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:06:32.431 -07 000000461 INF: Autofocus finished
17-03-18 02:06:32.631 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:06:32.631 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:06:32.631 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.138844355615832. ----------
17-03-18 02:06:32.631 -07 000000610 INF: Cycle	95	Tile	5	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:06:32.641 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28823, sync = True, waitForSettling = True)
17-03-18 02:06:32.641 -07 000000610 INF: Z Motor: Moving to -0.131943 mm, started at -0.138844 mm, distance = 6.90 um
17-03-18 02:06:32.641 -07 000000610 INF: FPGA: Xmit ZDACW 28823\n [Z Motor]
17-03-18 02:06:32.641 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:06:32.651 -07 000000610 INF: FPGA: 'ZDACW 28823' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:06:32.651 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:06:32.651 -07 000000590 INF: FPGA: Recv ZDACR 28823
17-03-18 02:06:32.661 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:32.661 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:06:32.811 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:32.811 -07 000000629 INF: FPGA: Recv ZSGSRD 29827
17-03-18 02:06:32.821 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:06:32.821 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:32.821 -07 000000467 INF: FPGA: Recv ZSGSRD 29833
17-03-18 02:06:32.831 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:32.831 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:32.831 -07 000000561 INF: FPGA: Recv ZSGSRD 29831
17-03-18 02:06:32.841 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:32.841 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:32.841 -07 000000467 INF: FPGA: Recv ZSGSRD 29831
17-03-18 02:06:32.851 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:32.851 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:32.851 -07 000000461 INF: FPGA: Recv ZSGSRD 29835
17-03-18 02:06:32.861 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:32.861 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:32.861 -07 000000561 INF: FPGA: Recv ZSGSRD 29832
17-03-18 02:06:32.871 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:32.871 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:32.871 -07 000000424 INF: FPGA: Recv ZSGSRD 29831
17-03-18 02:06:32.881 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:32.881 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:32.881 -07 000000430 INF: FPGA: Recv ZSGSRD 29822
17-03-18 02:06:32.891 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:32.891 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:32.891 -07 000000561 INF: FPGA: Recv ZSGSRD 29829
17-03-18 02:06:32.901 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:32.901 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:32.901 -07 000000430 INF: FPGA: Recv ZSGSRD 29830
17-03-18 02:06:32.911 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:32.911 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:06:32.911 -07 000000424 INF: FPGA: Recv ZPIEZORD 25332
17-03-18 02:06:32.921 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:32.921 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.398 V. Piezo Error = -9.9 V.
17-03-18 02:06:32.921 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29830 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29831 (-131.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29822 (-131.1 uncal um), Max = 29835 (-131.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:06:32.921 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29830, posNoise = 5, negNoise = 8
17-03-18 02:06:32.921 -07 000000610 INF: Z Motor: After move to -0.131943, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:06:32.921 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:06:32.921 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:06:32.921 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:06:32.921 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:06:32.921 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:06:32.921 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:06:32.921 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:06:32.921 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:06:32.921 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 02:06:32.921 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:06:32.921 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:06:32.921 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:06:32.921 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:06:32.931 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:06:32.931 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:06:32.931 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:06:32.931 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:06:32.941 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:06:32.941 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:06:32.941 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:06:32.941 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:06:32.941 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28999 150\n [Camera]
17-03-18 02:06:33.141 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:06:33.531 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:06:33.531 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:06:33.531 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:06:33.541 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:06:33.541 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:06:33.541 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:06:33.541 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:06:33.541 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start.
17-03-18 02:06:33.541 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:06:33.541 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:06:33.731 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28999 778
17-03-18 02:06:33.871 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:06:33.941 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 02:06:33.941 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:06:33.941 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:33.941 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:06:33.941 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:06:33.941 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:33.941 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:06:33.941 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:06:33.941 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:06:33.951 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:06:34.061 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:06:34.061 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:06:34.071 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:06:34.071 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:06:34.071 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:06:34.071 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:06:34.071 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:06:34.071 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 02:06:34.081 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:06:34.081 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:06:34.261 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:06:34.261 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:06:34.261 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28999 150' command took 2 ms to send, 1311 ms to get response, and 1317 ms overall
17-03-18 02:06:34.261 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:06:34.261 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22509765625, Z-Position -0.131957600199864. ------
17-03-18 02:06:34.261 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:06:34.261 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13834 mm
17-03-18 02:06:34.261 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:06:34.261 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 02:06:34.261 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 30221, sync = True, waitForSettling = False)
17-03-18 02:06:34.261 -07 000000606 INF: Z Motor: Moving to -0.138343 mm, started at -0.131958 mm, distance = -6.39 um
17-03-18 02:06:34.261 -07 000000455 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-18 02:06:34.261 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:06:34.271 -07 000000606 INF: FPGA: Xmit ZDACW 30221\n [Z Motor]
17-03-18 02:06:34.271 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:06:34.271 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:06:34.281 -07 000000606 INF: FPGA: 'ZDACW 30221' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:06:34.281 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:06:34.401 -07 000000430 INF: FPGA: Recv ZDACR 30221
17-03-18 02:06:34.401 -07 000000606 INF: FPGA: 'ZDACR' command took 119 ms to send, 0 ms to get response, and 120 ms overall
17-03-18 02:06:34.401 -07 000000606 INF: Z Motor: MoveAbsStepped took 131 ms (did NOT wait for settling yet))
17-03-18 02:06:34.401 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:34.401 -07 000000579 INF: FPGA: Recv YRDPOS 129485
17-03-18 02:06:34.411 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:06:34.411 -07 000000455 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 140 ms overall
17-03-18 02:06:34.411 -07 000000455 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:34.411 -07 000000455 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:06:34.411 -07 000000455 INF: Y Motor: Moving 1340 steps-16
17-03-18 02:06:34.421 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:06:34.461 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 02:06:34.461 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:06:34.461 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:34.461 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 02:06:34.461 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 02:06:34.461 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:34.461 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:06:34.461 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:06:34.471 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:06:34.471 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:06:34.611 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:06:34.611 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 342 ms overall
17-03-18 02:06:34.791 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 02:06:34.791 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:06:34.841 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:34.841 -07 000000430 INF: FPGA: Recv YRDPOS 131190
17-03-18 02:06:34.851 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:06:34.851 -07 000000455 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:34.851 -07 000000455 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-18 02:06:34.851 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.164 mm/sec
17-03-18 02:06:35.741 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 4.009895,
17-03-18 02:06:35.801 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:35.801 -07 000000629 INF: FPGA: Recv YRDPOS 131190
17-03-18 02:06:35.811 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:06:35.811 -07 000000455 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:35.831 -07 000000455 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:06:35.831 -07 000000455 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:06:35.831 -07 000000455 INF: Y Motor: Moved to 64.0576 after 1563 ms (table move)
17-03-18 02:06:35.831 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138343 mm (DAC = 30221)
17-03-18 02:06:35.831 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:35.831 -07 000000606 INF: FPGA: Recv ZSGSRD 30821
17-03-18 02:06:35.841 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:06:35.841 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:35.841 -07 000000629 INF: FPGA: Recv ZSGSRD 30824
17-03-18 02:06:35.851 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:35.851 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:35.851 -07 000000590 INF: FPGA: Recv ZSGSRD 30832
17-03-18 02:06:35.861 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:35.861 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:35.861 -07 000000629 INF: FPGA: Recv ZSGSRD 30826
17-03-18 02:06:35.871 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:35.871 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:35.871 -07 000000424 INF: FPGA: Recv ZSGSRD 30826
17-03-18 02:06:35.881 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:35.881 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:35.881 -07 000000444 INF: FPGA: Recv ZSGSRD 30829
17-03-18 02:06:35.891 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:35.891 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:35.891 -07 000000591 INF: FPGA: Recv ZSGSRD 30820
17-03-18 02:06:35.901 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:35.901 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:35.901 -07 000000424 INF: FPGA: Recv ZSGSRD 30819
17-03-18 02:06:35.911 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:35.911 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:35.911 -07 000000591 INF: FPGA: Recv ZSGSRD 30817
17-03-18 02:06:35.921 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:35.921 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:35.921 -07 000000629 INF: FPGA: Recv ZSGSRD 30829
17-03-18 02:06:35.931 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:35.931 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:06:35.931 -07 000000424 INF: FPGA: Recv ZPIEZORD 26718
17-03-18 02:06:35.941 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:35.941 -07 000000561 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.611 V. Piezo Error = -9.0 V.
17-03-18 02:06:35.941 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30824 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30825 (-137.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30817 (-137.5 uncal um), Max = 30832 (-137.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:06:35.941 -07 000000561 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30824, posNoise = 8, negNoise = 7
17-03-18 02:06:35.941 -07 000000561 INF: Z Motor: After move to -0.138343, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:06:35.941 -07 000000561 INF: Z Motor: Settle wait time = 1567 ms, measure time = 104 ms (allowed 150 ms), total time = 1671 ms
17-03-18 02:06:35.941 -07 000000561 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 02:06:35.991 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1723 ms
17-03-18 02:06:35.991 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:06:35.991 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:06:35.991 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:06:35.991 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:06:35.991 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:06:35.991 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:06:35.991 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:06:35.991 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:06:35.991 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:06:36.001 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:06:36.001 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:06:36.001 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:06:36.001 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:06:36.011 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:06:36.051 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:06:36.351 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:06:36.351 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:06:36.351 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:06:36.351 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:06:36.391 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:06:36.391 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 02:06:36.391 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:06:36.471 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:06:36.471 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:36.471 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:06:36.471 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:06:36.471 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:06:36.481 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:06:36.491 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:06:36.491 -07 000000455 INF: Autofocus start
17-03-18 02:06:36.491 -07 000000455 INF: MeasureProfile start
17-03-18 02:06:36.491 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:06:36.501 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:06:36.501 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:06:36.501 -07 000000455 INF: MeasureProfile done
17-03-18 02:06:36.501 -07 000000455 INF: X=-45  Z correction [um]=-0.2224548
17-03-18 02:06:36.501 -07 000000455 INF: Autofocus finished
17-03-18 02:06:36.701 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:06:36.701 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:06:36.701 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.138343267068775. ----------
17-03-18 02:06:36.701 -07 000000610 INF: Cycle	95	Tile	6	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:06:36.711 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28685, sync = True, waitForSettling = True)
17-03-18 02:06:36.711 -07 000000610 INF: Z Motor: Moving to -0.131312 mm, started at -0.138343 mm, distance = 7.03 um
17-03-18 02:06:36.711 -07 000000610 INF: FPGA: Xmit ZDACW 28685\n [Z Motor]
17-03-18 02:06:36.711 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:06:36.721 -07 000000610 INF: FPGA: 'ZDACW 28685' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:06:36.721 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:06:36.721 -07 000000444 INF: FPGA: Recv ZDACR 28685
17-03-18 02:06:36.731 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:36.731 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:06:36.881 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:36.881 -07 000000430 INF: FPGA: Recv ZSGSRD 29731
17-03-18 02:06:36.891 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:06:36.891 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:36.891 -07 000000590 INF: FPGA: Recv ZSGSRD 29733
17-03-18 02:06:36.901 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:36.901 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:36.901 -07 000000606 INF: FPGA: Recv ZSGSRD 29727
17-03-18 02:06:36.911 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:36.911 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:36.911 -07 000000455 INF: FPGA: Recv ZSGSRD 29733
17-03-18 02:06:36.921 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:36.921 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:36.921 -07 000000461 INF: FPGA: Recv ZSGSRD 29726
17-03-18 02:06:36.931 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:36.931 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:36.931 -07 000000462 INF: FPGA: Recv ZSGSRD 29725
17-03-18 02:06:36.941 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:36.941 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:36.941 -07 000000467 INF: FPGA: Recv ZSGSRD 29733
17-03-18 02:06:36.951 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:36.951 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:36.951 -07 000000444 INF: FPGA: Recv ZSGSRD 29731
17-03-18 02:06:36.961 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:36.961 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:36.961 -07 000000606 INF: FPGA: Recv ZSGSRD 29731
17-03-18 02:06:36.971 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:36.971 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:36.971 -07 000000462 INF: FPGA: Recv ZSGSRD 29729
17-03-18 02:06:36.981 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:36.981 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:06:36.981 -07 000000629 INF: FPGA: Recv ZPIEZORD 25258
17-03-18 02:06:36.991 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:36.991 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.377 V. Piezo Error = -9.8 V.
17-03-18 02:06:36.991 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29730 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29731 (-130.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29725 (-130.5 uncal um), Max = 29733 (-130.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:06:36.991 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29730, posNoise = 3, negNoise = 5
17-03-18 02:06:36.991 -07 000000610 INF: Z Motor: After move to -0.131312, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:06:36.991 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:06:36.991 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:06:36.991 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:06:36.991 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:06:36.991 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:06:36.991 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:06:36.991 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:06:36.991 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:06:36.991 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:06:36.991 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:06:36.991 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:06:37.001 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:06:37.001 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:06:37.001 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:06:37.001 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:06:37.001 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:06:37.001 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:06:37.011 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:06:37.011 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 02:06:37.011 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:06:37.011 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:06:37.011 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28861 150\n [Camera]
17-03-18 02:06:37.211 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:06:37.601 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:06:37.601 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:06:37.611 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:06:37.611 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:06:37.611 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:06:37.611 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:06:37.611 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:06:37.611 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:06:37.611 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:06:37.611 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-18 02:06:37.791 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28861 778
17-03-18 02:06:37.941 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:06:38.001 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:06:38.001 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:06:38.001 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:38.011 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:06:38.011 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:06:38.011 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:06:38.011 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:06:38.011 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:38.011 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:06:38.021 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 02:06:38.131 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:06:38.131 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:06:38.131 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:06:38.141 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:06:38.141 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:06:38.141 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:06:38.141 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-18 02:06:38.141 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:06:38.141 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:06:38.141 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 02:06:38.320 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:06:38.330 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:06:38.330 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28861 150' command took 2 ms to send, 1310 ms to get response, and 1316 ms overall
17-03-18 02:06:38.330 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:06:38.330 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.131315178985688. ------
17-03-18 02:06:38.330 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:06:38.330 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13781 mm
17-03-18 02:06:38.330 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:06:38.330 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:06:38.330 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 02:06:38.330 -07 000000462 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-18 02:06:38.340 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:06:38.340 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:38.340 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 30104, sync = True, waitForSettling = False)
17-03-18 02:06:38.340 -07 000000591 INF: Z Motor: Moving to -0.137807 mm, started at -0.131315 mm, distance = -6.49 um
17-03-18 02:06:38.340 -07 000000579 INF: FPGA: Recv YRDPOS 131190
17-03-18 02:06:38.350 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:06:38.350 -07 000000462 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:38.350 -07 000000462 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:06:38.350 -07 000000462 INF: Y Motor: Moving 1336 steps-10
17-03-18 02:06:38.350 -07 000000591 INF: FPGA: Xmit ZDACW 30104\n [Z Motor]
17-03-18 02:06:38.350 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:06:38.360 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:06:38.360 -07 000000591 INF: FPGA: 'ZDACW 30104' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:06:38.370 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:06:38.380 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:06:38.380 -07 000000629 INF: FPGA: Recv ZDACR 30104
17-03-18 02:06:38.390 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:06:38.390 -07 000000591 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 02:06:38.540 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 02:06:38.540 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:06:38.540 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:38.540 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 02:06:38.540 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:06:38.540 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:38.550 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:06:38.550 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 02:06:38.550 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:06:38.550 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 02:06:38.560 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:06:38.560 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:06:38.740 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 02:06:38.740 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:06:38.780 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:38.790 -07 000000561 INF: FPGA: Recv YRDPOS 132873
17-03-18 02:06:38.800 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:06:38.800 -07 000000462 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:38.800 -07 000000462 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 02:06:38.800 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.103 mm/sec
17-03-18 02:06:39.750 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:39.750 -07 000000444 INF: FPGA: Recv YRDPOS 132873
17-03-18 02:06:39.760 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:39.760 -07 000000462 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:39.800 -07 000000462 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:06:39.800 -07 000000462 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:06:39.800 -07 000000462 INF: Y Motor: Moved to 64.8794 after 1461 ms (table move)
17-03-18 02:06:39.800 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137807 mm (DAC = 30104)
17-03-18 02:06:39.800 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:39.810 -07 000000629 INF: FPGA: Recv ZSGSRD 30743
17-03-18 02:06:39.810 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:06:39.810 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:39.810 -07 000000591 INF: FPGA: Recv ZSGSRD 30743
17-03-18 02:06:39.820 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:06:39.820 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:39.820 -07 000000461 INF: FPGA: Recv ZSGSRD 30750
17-03-18 02:06:39.830 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:39.830 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:39.830 -07 000000462 INF: FPGA: Recv ZSGSRD 30742
17-03-18 02:06:39.840 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:39.840 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:39.840 -07 000000461 INF: FPGA: Recv ZSGSRD 30747
17-03-18 02:06:39.850 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:39.850 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:39.850 -07 000000462 INF: FPGA: Recv ZSGSRD 30738
17-03-18 02:06:39.860 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:39.860 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:39.860 -07 000000461 INF: FPGA: Recv ZSGSRD 30731
17-03-18 02:06:39.870 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:39.870 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:39.870 -07 000000462 INF: FPGA: Recv ZSGSRD 30741
17-03-18 02:06:39.880 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:39.880 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:39.880 -07 000000461 INF: FPGA: Recv ZSGSRD 30742
17-03-18 02:06:39.890 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:39.890 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:39.890 -07 000000462 INF: FPGA: Recv ZSGSRD 30748
17-03-18 02:06:39.900 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:39.900 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:06:39.900 -07 000000461 INF: FPGA: Recv ZPIEZORD 26611
17-03-18 02:06:39.910 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:39.910 -07 000000467 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.594 V. Piezo Error = -9.1 V.
17-03-18 02:06:39.910 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30742 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30742 (-137.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30731 (-136.9 uncal um), Max = 30750 (-137.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 02:06:39.910 -07 000000467 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30742, posNoise = 8, negNoise = 11
17-03-18 02:06:39.910 -07 000000467 INF: Z Motor: After move to -0.137807, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:06:39.910 -07 000000467 INF: Z Motor: Settle wait time = 1464 ms, measure time = 105 ms (allowed 150 ms), total time = 1569 ms
17-03-18 02:06:39.910 -07 000000467 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 02:06:39.960 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 02:06:39.960 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:06:39.960 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:06:39.960 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:06:39.960 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:06:39.960 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:06:39.960 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:06:39.960 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:06:39.960 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:06:39.960 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:06:39.970 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:06:39.970 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:06:39.970 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:06:39.970 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:06:39.980 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:06:40.020 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:06:40.320 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:06:40.320 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:06:40.320 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:06:40.330 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 02:06:40.360 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:06:40.360 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 02:06:40.360 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:06:40.440 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:06:40.440 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:40.440 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:06:40.440 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:06:40.460 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:06:40.460 -07 000000424 INF: Autofocus start
17-03-18 02:06:40.460 -07 000000424 INF: MeasureProfile start
17-03-18 02:06:40.460 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:06:40.470 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:06:40.470 -07 000000424 INF: MeasureProfile done
17-03-18 02:06:40.470 -07 000000424 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:06:40.470 -07 000000424 INF: Autofocus finished
17-03-18 02:06:40.480 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:06:40.680 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:06:40.680 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 02:06:40.680 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.13781648167315. ----------
17-03-18 02:06:40.680 -07 000000610 INF: Cycle	95	Tile	7	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:06:40.690 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28612, sync = True, waitForSettling = True)
17-03-18 02:06:40.690 -07 000000610 INF: Z Motor: Moving to -0.130977 mm, started at -0.137816 mm, distance = 6.84 um
17-03-18 02:06:40.690 -07 000000610 INF: FPGA: Xmit ZDACW 28612\n [Z Motor]
17-03-18 02:06:40.690 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:06:40.700 -07 000000610 INF: FPGA: 'ZDACW 28612' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:40.700 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:06:40.700 -07 000000461 INF: FPGA: Recv ZDACR 28612
17-03-18 02:06:40.710 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:40.710 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:06:40.860 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:40.860 -07 000000462 INF: FPGA: Recv ZSGSRD 29682
17-03-18 02:06:40.870 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:06:40.870 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:40.870 -07 000000430 INF: FPGA: Recv ZSGSRD 29680
17-03-18 02:06:40.880 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:40.880 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:40.880 -07 000000611 INF: FPGA: Recv ZSGSRD 29682
17-03-18 02:06:40.890 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:40.890 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:40.890 -07 000000591 INF: FPGA: Recv ZSGSRD 29673
17-03-18 02:06:40.900 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:40.900 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:40.900 -07 000000629 INF: FPGA: Recv ZSGSRD 29686
17-03-18 02:06:40.910 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:40.910 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:40.910 -07 000000606 INF: FPGA: Recv ZSGSRD 29677
17-03-18 02:06:40.920 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:40.920 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:40.920 -07 000000461 INF: FPGA: Recv ZSGSRD 29674
17-03-18 02:06:40.930 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:40.930 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:40.930 -07 000000444 INF: FPGA: Recv ZSGSRD 29682
17-03-18 02:06:40.940 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:40.940 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:40.940 -07 000000461 INF: FPGA: Recv ZSGSRD 29677
17-03-18 02:06:40.950 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:40.950 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:40.950 -07 000000455 INF: FPGA: Recv ZSGSRD 29680
17-03-18 02:06:40.960 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:40.960 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:06:40.960 -07 000000467 INF: FPGA: Recv ZPIEZORD 25236
17-03-18 02:06:40.970 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:40.970 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.366 V. Piezo Error = -9.7 V.
17-03-18 02:06:40.970 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29679 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29680 (-130.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29673 (-130.2 uncal um), Max = 29686 (-130.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:06:40.970 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29679, posNoise = 7, negNoise = 6
17-03-18 02:06:40.970 -07 000000610 INF: Z Motor: After move to -0.130977, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:06:40.970 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:06:40.970 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:06:40.970 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:06:40.970 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:06:40.970 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:06:40.970 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:06:40.970 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:06:40.970 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:06:40.970 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:06:40.970 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:06:40.970 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:06:40.970 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:06:40.970 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:06:40.970 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:06:40.970 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:06:40.970 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:06:40.980 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:06:40.990 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:06:40.990 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:06:40.990 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 02:06:40.990 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:06:40.990 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28788 150\n [Camera]
17-03-18 02:06:41.110 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 3.985358,
17-03-18 02:06:41.190 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:06:41.470 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:06:41.470 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:06:41.590 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:06:41.590 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:06:41.590 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:06:41.590 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:06:41.590 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:06:41.590 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:06:41.590 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:06:41.590 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:06:41.590 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:06:41.590 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:06:41.780 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28788 778
17-03-18 02:06:41.930 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:06:41.980 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:06:41.980 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:06:41.980 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:41.980 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 02:06:41.990 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:06:41.990 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:41.990 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:06:41.990 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:06:41.990 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:06:42.000 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 02:06:42.120 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:06:42.120 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:06:42.120 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:06:42.120 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:06:42.120 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:06:42.120 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:06:42.120 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:06:42.120 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:06:42.120 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:06:42.120 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:06:42.310 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:06:42.310 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:06:42.310 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28788 150' command took 2 ms to send, 1306 ms to get response, and 1316 ms overall
17-03-18 02:06:42.430 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:06:42.430 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.130987544166458. ------
17-03-18 02:06:42.440 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:06:42.440 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13758 mm
17-03-18 02:06:42.440 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:06:42.440 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:06:42.440 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 30054, sync = True, waitForSettling = False)
17-03-18 02:06:42.440 -07 000000430 INF: Z Motor: Moving to -0.137578 mm, started at -0.130988 mm, distance = -6.59 um
17-03-18 02:06:42.440 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 02:06:42.440 -07 000000462 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-18 02:06:42.450 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:42.450 -07 000000430 INF: FPGA: Xmit ZDACW 30054\n [Z Motor]
17-03-18 02:06:42.450 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:06:42.460 -07 000000430 INF: FPGA: 'ZDACW 30054' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:06:42.460 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:42.460 -07 000000467 INF: FPGA: Recv YRDPOS 132874
17-03-18 02:06:42.470 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:06:42.470 -07 000000462 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:42.470 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:06:42.470 -07 000000462 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:06:42.470 -07 000000462 INF: Y Motor: Moving 1348 steps-27
17-03-18 02:06:42.480 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:06:42.480 -07 000000591 INF: FPGA: Recv ZDACR 30054
17-03-18 02:06:42.490 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:06:42.490 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:06:42.490 -07 000000430 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 02:06:42.520 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 02:06:42.520 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:06:42.520 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:42.530 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 02:06:42.530 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:06:42.530 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:42.530 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:06:42.530 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:06:42.530 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 02:06:42.540 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:06:42.670 -07 000000430 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:06:42.670 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 02:06:42.860 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 02:06:42.860 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 02:06:42.910 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:42.910 -07 000000606 INF: FPGA: Recv YRDPOS 134584
17-03-18 02:06:42.920 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:06:42.920 -07 000000462 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:42.920 -07 000000462 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 02:06:42.920 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.843 mm, average velocity = 2.140 mm/sec
17-03-18 02:06:43.870 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:43.870 -07 000000467 INF: FPGA: Recv YRDPOS 134584
17-03-18 02:06:43.880 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:06:43.880 -07 000000462 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:43.900 -07 000000462 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:06:43.900 -07 000000462 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:06:43.900 -07 000000462 INF: Y Motor: Moved to 65.7148 after 1463 ms (table move)
17-03-18 02:06:43.910 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137578 mm (DAC = 30054)
17-03-18 02:06:43.910 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:43.910 -07 000000430 INF: FPGA: Recv ZSGSRD 30701
17-03-18 02:06:43.920 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:06:43.920 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:43.920 -07 000000467 INF: FPGA: Recv ZSGSRD 30705
17-03-18 02:06:43.930 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:43.930 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:43.930 -07 000000462 INF: FPGA: Recv ZSGSRD 30707
17-03-18 02:06:43.940 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:43.940 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:43.940 -07 000000430 INF: FPGA: Recv ZSGSRD 30716
17-03-18 02:06:43.950 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:43.950 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:43.950 -07 000000467 INF: FPGA: Recv ZSGSRD 30703
17-03-18 02:06:43.960 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:43.960 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:43.960 -07 000000462 INF: FPGA: Recv ZSGSRD 30708
17-03-18 02:06:43.970 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:43.970 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:43.970 -07 000000462 INF: FPGA: Recv ZSGSRD 30706
17-03-18 02:06:43.980 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:43.980 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:43.980 -07 000000561 INF: FPGA: Recv ZSGSRD 30703
17-03-18 02:06:43.990 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:43.990 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:43.990 -07 000000430 INF: FPGA: Recv ZSGSRD 30704
17-03-18 02:06:44.000 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:44.000 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:44.000 -07 000000462 INF: FPGA: Recv ZSGSRD 30704
17-03-18 02:06:44.010 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:44.010 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:06:44.010 -07 000000606 INF: FPGA: Recv ZPIEZORD 26616
17-03-18 02:06:44.020 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:44.020 -07 000000629 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.586 V. Piezo Error = -9.0 V.
17-03-18 02:06:44.020 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30706 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30704 (-136.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30701 (-136.8 uncal um), Max = 30716 (-136.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:06:44.020 -07 000000629 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30706, posNoise = 10, negNoise = 5
17-03-18 02:06:44.020 -07 000000629 INF: Z Motor: After move to -0.137578, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:06:44.020 -07 000000629 INF: Z Motor: Settle wait time = 1470 ms, measure time = 106 ms (allowed 150 ms), total time = 1576 ms
17-03-18 02:06:44.020 -07 000000629 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:06:44.070 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 02:06:44.070 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:06:44.070 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:06:44.070 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:06:44.070 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:06:44.070 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:06:44.070 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:06:44.070 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:06:44.070 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:06:44.070 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:06:44.080 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:06:44.080 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:06:44.080 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:06:44.080 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:06:44.090 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:06:44.130 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:06:44.430 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:06:44.430 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:06:44.430 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:06:44.430 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:06:44.470 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:06:44.470 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 02:06:44.470 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 02:06:44.550 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:06:44.550 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:44.550 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:06:44.550 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:06:44.570 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:06:44.570 -07 000000629 INF: Autofocus start
17-03-18 02:06:44.570 -07 000000629 INF: MeasureProfile start
17-03-18 02:06:44.570 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:06:44.580 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:06:44.580 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:06:44.580 -07 000000629 INF: MeasureProfile done
17-03-18 02:06:44.580 -07 000000629 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:06:44.580 -07 000000629 INF: Autofocus finished
17-03-18 02:06:44.780 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:06:44.780 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:06:44.780 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.137585210036047. ----------
17-03-18 02:06:44.780 -07 000000610 INF: Cycle	95	Tile	8	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:06:44.790 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28578, sync = True, waitForSettling = True)
17-03-18 02:06:44.790 -07 000000610 INF: Z Motor: Moving to -0.130822 mm, started at -0.137585 mm, distance = 6.76 um
17-03-18 02:06:44.790 -07 000000610 INF: FPGA: Xmit ZDACW 28578\n [Z Motor]
17-03-18 02:06:44.790 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 02:06:44.800 -07 000000610 INF: FPGA: 'ZDACW 28578' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:06:44.800 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:06:44.800 -07 000000461 INF: FPGA: Recv ZDACR 28578
17-03-18 02:06:44.810 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:44.810 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:06:44.960 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:44.960 -07 000000561 INF: FPGA: Recv ZSGSRD 29652
17-03-18 02:06:44.970 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:06:44.970 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:44.970 -07 000000430 INF: FPGA: Recv ZSGSRD 29656
17-03-18 02:06:44.980 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:44.980 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:44.980 -07 000000462 INF: FPGA: Recv ZSGSRD 29658
17-03-18 02:06:44.990 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:44.990 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:44.990 -07 000000430 INF: FPGA: Recv ZSGSRD 29651
17-03-18 02:06:45.000 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:45.000 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:45.000 -07 000000591 INF: FPGA: Recv ZSGSRD 29651
17-03-18 02:06:45.010 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:45.010 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:45.010 -07 000000462 INF: FPGA: Recv ZSGSRD 29655
17-03-18 02:06:45.020 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:45.020 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:45.020 -07 000000629 INF: FPGA: Recv ZSGSRD 29656
17-03-18 02:06:45.030 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:45.030 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:45.030 -07 000000591 INF: FPGA: Recv ZSGSRD 29653
17-03-18 02:06:45.040 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:45.040 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:45.040 -07 000000629 INF: FPGA: Recv ZSGSRD 29655
17-03-18 02:06:45.050 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:45.050 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:45.050 -07 000000467 INF: FPGA: Recv ZSGSRD 29655
17-03-18 02:06:45.060 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:45.060 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:06:45.060 -07 000000444 INF: FPGA: Recv ZPIEZORD 25252
17-03-18 02:06:45.070 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:45.070 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.361 V. Piezo Error = -9.7 V.
17-03-18 02:06:45.070 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29654 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29655 (-130.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29651 (-130.0 uncal um), Max = 29658 (-130.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:06:45.070 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29654, posNoise = 4, negNoise = 3
17-03-18 02:06:45.070 -07 000000610 INF: Z Motor: After move to -0.130822, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:06:45.070 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:06:45.070 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:06:45.070 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:06:45.080 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:06:45.080 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:06:45.080 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:06:45.080 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:06:45.080 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:06:45.080 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:06:45.080 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:06:45.080 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:06:45.080 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:06:45.080 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:06:45.090 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:06:45.090 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:06:45.090 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:06:45.090 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:06:45.110 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:06:45.110 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 02:06:45.110 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 02:06:45.110 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 02:06:45.110 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28755 150\n [Camera]
17-03-18 02:06:45.310 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:06:45.700 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:06:45.700 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:06:45.700 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:06:45.710 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:06:45.710 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-18 02:06:45.710 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:06:45.710 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:06:45.710 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:06:45.720 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:06:45.720 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:06:45.900 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28755 778
17-03-18 02:06:46.050 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:06:46.100 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:06:46.100 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:06:46.100 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:46.110 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:06:46.110 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:06:46.110 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 02:06:46.110 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:06:46.110 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:46.120 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:06:46.120 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:06:46.230 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:06:46.230 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:06:46.240 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:06:46.240 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:06:46.240 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:06:46.240 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:06:46.250 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:06:46.250 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:06:46.250 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:06:46.250 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:06:46.430 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:06:46.430 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:06:46.430 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28755 150' command took 2 ms to send, 1312 ms to get response, and 1317 ms overall
17-03-18 02:06:46.430 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:06:46.430 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71484375, Z-Position -0.130826938862914. ------
17-03-18 02:06:46.430 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:06:46.430 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13720 mm
17-03-18 02:06:46.550 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:06:46.550 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:06:46.550 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:06:46.550 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:06:46.550 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 02:06:46.550 -07 000000444 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-18 02:06:46.550 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29972, sync = True, waitForSettling = False)
17-03-18 02:06:46.550 -07 000000462 INF: Z Motor: Moving to -0.137203 mm, started at -0.130827 mm, distance = -6.38 um
17-03-18 02:06:46.560 -07 000000462 INF: FPGA: Xmit ZDACW 29972\n [Z Motor]
17-03-18 02:06:46.560 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 114 ms to send, 0 ms to get response, and 123 ms overall
17-03-18 02:06:46.560 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:06:46.570 -07 000000462 INF: FPGA: 'ZDACW 29972' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:06:46.580 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:46.580 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 3.985358,
17-03-18 02:06:46.580 -07 000000430 INF: FPGA: Recv YRDPOS 134584
17-03-18 02:06:46.590 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:06:46.590 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 34 ms overall
17-03-18 02:06:46.590 -07 000000444 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:46.590 -07 000000444 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:06:46.590 -07 000000444 INF: Y Motor: Moving 1340 steps-16
17-03-18 02:06:46.600 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:06:46.600 -07 000000430 INF: FPGA: Recv ZDACR 29972
17-03-18 02:06:46.610 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 40 ms overall
17-03-18 02:06:46.610 -07 000000462 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 02:06:46.620 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:06:46.640 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:06:46.640 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:06:46.640 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:46.640 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 02:06:46.640 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:06:46.640 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:46.650 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:06:46.650 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 02:06:46.650 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:06:46.660 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 02:06:46.790 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:06:46.790 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 02:06:46.990 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 02:06:46.990 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-18 02:06:47.040 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:47.040 -07 000000561 INF: FPGA: Recv YRDPOS 136273
17-03-18 02:06:47.050 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:06:47.050 -07 000000444 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:47.050 -07 000000444 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 02:06:47.050 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.838 mm, average velocity = 2.058 mm/sec
17-03-18 02:06:48.000 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:48.000 -07 000000561 INF: FPGA: Recv YRDPOS 136273
17-03-18 02:06:48.010 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:06:48.010 -07 000000444 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:48.030 -07 000000444 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:06:48.030 -07 000000444 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:06:48.030 -07 000000444 INF: Y Motor: Moved to 66.5396 after 1483 ms (table move)
17-03-18 02:06:48.040 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137203 mm (DAC = 29972)
17-03-18 02:06:48.040 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:48.040 -07 000000467 INF: FPGA: Recv ZSGSRD 30655
17-03-18 02:06:48.050 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:06:48.050 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:48.050 -07 000000606 INF: FPGA: Recv ZSGSRD 30651
17-03-18 02:06:48.060 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:48.060 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:48.060 -07 000000606 INF: FPGA: Recv ZSGSRD 30655
17-03-18 02:06:48.070 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:48.070 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:48.070 -07 000000606 INF: FPGA: Recv ZSGSRD 30644
17-03-18 02:06:48.080 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:48.080 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:48.080 -07 000000606 INF: FPGA: Recv ZSGSRD 30643
17-03-18 02:06:48.090 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:48.090 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:48.090 -07 000000606 INF: FPGA: Recv ZSGSRD 30645
17-03-18 02:06:48.100 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:48.100 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:48.100 -07 000000606 INF: FPGA: Recv ZSGSRD 30645
17-03-18 02:06:48.110 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:48.110 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:48.110 -07 000000606 INF: FPGA: Recv ZSGSRD 30644
17-03-18 02:06:48.120 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:48.120 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:48.120 -07 000000467 INF: FPGA: Recv ZSGSRD 30654
17-03-18 02:06:48.130 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:48.130 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:48.130 -07 000000467 INF: FPGA: Recv ZSGSRD 30648
17-03-18 02:06:48.140 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:48.140 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:06:48.140 -07 000000430 INF: FPGA: Recv ZPIEZORD 26526
17-03-18 02:06:48.150 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:48.150 -07 000000461 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.573 V. Piezo Error = -9.1 V.
17-03-18 02:06:48.150 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30648 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30646 (-136.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30643 (-136.4 uncal um), Max = 30655 (-136.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:06:48.150 -07 000000461 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30648, posNoise = 7, negNoise = 5
17-03-18 02:06:48.150 -07 000000461 INF: Z Motor: After move to -0.137203, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:06:48.150 -07 000000461 INF: Z Motor: Settle wait time = 1487 ms, measure time = 107 ms (allowed 150 ms), total time = 1594 ms
17-03-18 02:06:48.150 -07 000000461 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:06:48.200 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1763 ms
17-03-18 02:06:48.200 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:06:48.200 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:06:48.200 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:06:48.200 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:06:48.200 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:06:48.200 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:06:48.200 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:06:48.200 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:06:48.200 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:06:48.210 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:06:48.210 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:06:48.210 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:06:48.210 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:06:48.220 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:06:48.260 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:06:48.560 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:06:48.560 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:06:48.560 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:06:48.560 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:06:48.600 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:06:48.600 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 02:06:48.600 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:06:48.680 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:06:48.680 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:48.680 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:06:48.680 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:06:48.700 -07 000000611 INF: Autofocus start
17-03-18 02:06:48.700 -07 000000611 INF: MeasureProfile start
17-03-18 02:06:48.700 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:06:48.710 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:06:48.710 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-18 02:06:48.710 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:06:48.710 -07 000000611 INF: MeasureProfile done
17-03-18 02:06:48.720 -07 000000611 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:06:48.720 -07 000000611 INF: Autofocus finished
17-03-18 02:06:48.910 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:06:48.910 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 02:06:48.920 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.137212605731825. ----------
17-03-18 02:06:48.920 -07 000000610 INF: Cycle	95	Tile	9	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:06:48.920 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28496, sync = True, waitForSettling = True)
17-03-18 02:06:48.920 -07 000000610 INF: Z Motor: Moving to -0.130446 mm, started at -0.137213 mm, distance = 6.77 um
17-03-18 02:06:48.920 -07 000000610 INF: FPGA: Xmit ZDACW 28496\n [Z Motor]
17-03-18 02:06:48.920 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:06:48.930 -07 000000610 INF: FPGA: 'ZDACW 28496' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:06:48.930 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:06:48.930 -07 000000461 INF: FPGA: Recv ZDACR 28496
17-03-18 02:06:48.940 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:48.940 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:06:49.090 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:49.090 -07 000000461 INF: FPGA: Recv ZSGSRD 29590
17-03-18 02:06:49.100 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:06:49.100 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:49.100 -07 000000606 INF: FPGA: Recv ZSGSRD 29598
17-03-18 02:06:49.110 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:49.110 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:49.110 -07 000000461 INF: FPGA: Recv ZSGSRD 29597
17-03-18 02:06:49.120 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:49.120 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:49.120 -07 000000444 INF: FPGA: Recv ZSGSRD 29594
17-03-18 02:06:49.130 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:49.130 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:49.130 -07 000000461 INF: FPGA: Recv ZSGSRD 29593
17-03-18 02:06:49.140 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:49.140 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:49.140 -07 000000444 INF: FPGA: Recv ZSGSRD 29596
17-03-18 02:06:49.150 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:49.150 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:49.150 -07 000000561 INF: FPGA: Recv ZSGSRD 29601
17-03-18 02:06:49.160 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:49.160 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:49.160 -07 000000444 INF: FPGA: Recv ZSGSRD 29594
17-03-18 02:06:49.170 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:49.170 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:49.170 -07 000000561 INF: FPGA: Recv ZSGSRD 29598
17-03-18 02:06:49.180 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:49.180 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:49.180 -07 000000444 INF: FPGA: Recv ZSGSRD 29602
17-03-18 02:06:49.190 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:49.190 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:06:49.190 -07 000000561 INF: FPGA: Recv ZPIEZORD 25197
17-03-18 02:06:49.200 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:49.200 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.348 V. Piezo Error = -9.7 V.
17-03-18 02:06:49.200 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29596 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29596 (-129.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29590 (-129.6 uncal um), Max = 29602 (-129.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:06:49.200 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29596, posNoise = 6, negNoise = 6
17-03-18 02:06:49.200 -07 000000610 INF: Z Motor: After move to -0.130446, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:06:49.200 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:06:49.200 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:06:49.200 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:06:49.200 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:06:49.200 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:06:49.200 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:06:49.200 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:06:49.200 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:06:49.200 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:06:49.200 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:06:49.200 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:06:49.200 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:06:49.200 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:06:49.210 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:06:49.210 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:06:49.210 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:06:49.210 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:06:49.220 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:06:49.220 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:06:49.220 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:06:49.220 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:06:49.220 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28673 150\n [Camera]
17-03-18 02:06:49.419 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:06:49.809 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:06:49.809 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:06:49.809 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:06:49.819 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:06:49.819 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:06:49.819 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:06:49.819 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:06:49.819 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-18 02:06:49.819 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:06:49.819 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:06:50.009 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28673 778
17-03-18 02:06:50.149 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:06:50.199 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:06:50.199 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:06:50.199 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:50.199 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 02:06:50.199 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:06:50.199 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:50.199 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:06:50.199 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:06:50.199 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:06:50.209 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:06:50.349 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:06:50.349 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:06:50.349 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:06:50.349 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:06:50.349 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:06:50.349 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:06:50.349 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:06:50.349 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:06:50.349 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:06:50.349 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:06:50.539 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:06:50.539 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:06:50.539 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28673 150' command took 2 ms to send, 1311 ms to get response, and 1317 ms overall
17-03-18 02:06:50.539 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:06:50.539 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.130454334558692. ------
17-03-18 02:06:50.539 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:06:50.539 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13726 mm
17-03-18 02:06:50.539 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:06:50.539 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 02:06:50.539 -07 000000462 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-18 02:06:50.539 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 29984, sync = True, waitForSettling = False)
17-03-18 02:06:50.539 -07 000000467 INF: Z Motor: Moving to -0.137258 mm, started at -0.130454 mm, distance = -6.80 um
17-03-18 02:06:50.549 -07 000000467 INF: FPGA: Xmit ZDACW 29984\n [Z Motor]
17-03-18 02:06:50.549 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:06:50.549 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 8 ms overall
17-03-18 02:06:50.549 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:06:50.559 -07 000000467 INF: FPGA: 'ZDACW 29984' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:06:50.559 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:06:50.569 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:50.569 -07 000000502 INF: FPGA: Recv YRDPOS 136274
17-03-18 02:06:50.579 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:06:50.579 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 02:06:50.579 -07 000000462 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:50.579 -07 000000629 INF: FPGA: Recv ZDACR 29984
17-03-18 02:06:50.579 -07 000000462 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:06:50.579 -07 000000462 INF: Y Motor: Moving 1348 steps-27
17-03-18 02:06:50.589 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:06:50.589 -07 000000467 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 02:06:50.589 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:06:50.749 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 02:06:50.749 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:06:50.749 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:50.749 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 02:06:50.749 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:06:50.759 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:50.759 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:06:50.759 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 208 ms overall
17-03-18 02:06:50.759 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:06:50.759 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:06:50.759 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 02:06:50.769 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 02:06:50.959 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 02:06:50.959 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-18 02:06:51.009 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:51.009 -07 000000611 INF: FPGA: Recv YRDPOS 137979
17-03-18 02:06:51.019 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:06:51.019 -07 000000462 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:51.019 -07 000000462 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 02:06:51.019 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.843 mm, average velocity = 2.213 mm/sec
17-03-18 02:06:51.469 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:06:51.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:06:51.979 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:51.979 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 3.978563,
17-03-18 02:06:51.979 -07 000000424 INF: FPGA: Recv YRDPOS 137979
17-03-18 02:06:51.989 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:06:51.989 -07 000000462 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:52.019 -07 000000462 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:06:52.019 -07 000000462 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:06:52.019 -07 000000462 INF: Y Motor: Moved to 67.3726 after 1471 ms (table move)
17-03-18 02:06:52.019 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137258 mm (DAC = 29984)
17-03-18 02:06:52.029 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:52.029 -07 000000606 INF: FPGA: Recv ZSGSRD 30659
17-03-18 02:06:52.039 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:06:52.039 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:52.039 -07 000000502 INF: FPGA: Recv ZSGSRD 30655
17-03-18 02:06:52.049 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:52.049 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:52.049 -07 000000512 INF: FPGA: Recv ZSGSRD 30658
17-03-18 02:06:52.059 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:52.059 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:52.059 -07 000000579 INF: FPGA: Recv ZSGSRD 30654
17-03-18 02:06:52.069 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:52.069 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:52.069 -07 000000611 INF: FPGA: Recv ZSGSRD 30654
17-03-18 02:06:52.079 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:52.079 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:52.079 -07 000000591 INF: FPGA: Recv ZSGSRD 30657
17-03-18 02:06:52.089 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:52.089 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:52.089 -07 000000455 INF: FPGA: Recv ZSGSRD 30661
17-03-18 02:06:52.099 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:52.099 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:52.099 -07 000000444 INF: FPGA: Recv ZSGSRD 30663
17-03-18 02:06:52.109 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:52.109 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:52.109 -07 000000462 INF: FPGA: Recv ZSGSRD 30658
17-03-18 02:06:52.119 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:52.119 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:52.119 -07 000000591 INF: FPGA: Recv ZSGSRD 30661
17-03-18 02:06:52.129 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:52.129 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:06:52.129 -07 000000462 INF: FPGA: Recv ZPIEZORD 26535
17-03-18 02:06:52.139 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:52.139 -07 000000561 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.575 V. Piezo Error = -9.1 V.
17-03-18 02:06:52.139 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30658 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30658 (-136.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30654 (-136.5 uncal um), Max = 30663 (-136.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:06:52.139 -07 000000561 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30658, posNoise = 5, negNoise = 4
17-03-18 02:06:52.139 -07 000000561 INF: Z Motor: After move to -0.137258, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:06:52.139 -07 000000561 INF: Z Motor: Settle wait time = 1476 ms, measure time = 115 ms (allowed 150 ms), total time = 1591 ms
17-03-18 02:06:52.139 -07 000000561 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-18 02:06:52.179 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1634 ms
17-03-18 02:06:52.179 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:06:52.179 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:06:52.179 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:06:52.179 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:06:52.179 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:06:52.179 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:06:52.179 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:06:52.179 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:06:52.179 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:06:52.189 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:06:52.189 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:06:52.199 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:06:52.199 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:06:52.199 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:06:52.249 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:06:52.549 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:06:52.549 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:06:52.549 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:06:52.549 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 02:06:52.589 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:06:52.589 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 02:06:52.589 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 385 ms to get response, and 388 ms overall
17-03-18 02:06:52.679 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 02:06:52.679 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:52.679 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:06:52.679 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 02:06:52.689 -07 000000502 INF: Autofocus start
17-03-18 02:06:52.689 -07 000000502 INF: MeasureProfile start
17-03-18 02:06:52.689 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:06:52.689 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:06:52.699 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:06:52.699 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:06:52.699 -07 000000502 INF: MeasureProfile done
17-03-18 02:06:52.699 -07 000000502 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:06:52.699 -07 000000502 INF: Autofocus finished
17-03-18 02:06:52.899 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:06:52.899 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:06:52.899 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.137276847853242. ----------
17-03-18 02:06:52.899 -07 000000610 INF: Cycle	95	Tile	10	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:06:52.909 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28492, sync = True, waitForSettling = True)
17-03-18 02:06:52.909 -07 000000610 INF: Z Motor: Moving to -0.130428 mm, started at -0.137277 mm, distance = 6.85 um
17-03-18 02:06:52.909 -07 000000610 INF: FPGA: Xmit ZDACW 28492\n [Z Motor]
17-03-18 02:06:52.909 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:06:52.919 -07 000000610 INF: FPGA: 'ZDACW 28492' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:06:52.919 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:06:52.919 -07 000000462 INF: FPGA: Recv ZDACR 28492
17-03-18 02:06:52.929 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:52.929 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:06:53.079 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:53.079 -07 000000462 INF: FPGA: Recv ZSGSRD 29594
17-03-18 02:06:53.089 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:06:53.089 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:53.089 -07 000000444 INF: FPGA: Recv ZSGSRD 29591
17-03-18 02:06:53.099 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:53.099 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:53.099 -07 000000462 INF: FPGA: Recv ZSGSRD 29593
17-03-18 02:06:53.109 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:53.109 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:53.109 -07 000000561 INF: FPGA: Recv ZSGSRD 29589
17-03-18 02:06:53.119 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:53.119 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:53.119 -07 000000561 INF: FPGA: Recv ZSGSRD 29590
17-03-18 02:06:53.129 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:53.129 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:53.129 -07 000000512 INF: FPGA: Recv ZSGSRD 29595
17-03-18 02:06:53.139 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:53.139 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:53.139 -07 000000444 INF: FPGA: Recv ZSGSRD 29592
17-03-18 02:06:53.149 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:53.149 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:53.149 -07 000000430 INF: FPGA: Recv ZSGSRD 29591
17-03-18 02:06:53.159 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:53.159 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:53.159 -07 000000591 INF: FPGA: Recv ZSGSRD 29592
17-03-18 02:06:53.169 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:53.169 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:53.169 -07 000000424 INF: FPGA: Recv ZSGSRD 29591
17-03-18 02:06:53.179 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:53.179 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:06:53.179 -07 000000591 INF: FPGA: Recv ZPIEZORD 25165
17-03-18 02:06:53.189 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:53.189 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.348 V. Piezo Error = -9.7 V.
17-03-18 02:06:53.189 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29592 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29592 (-129.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29589 (-129.6 uncal um), Max = 29595 (-129.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:06:53.189 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29592, posNoise = 3, negNoise = 3
17-03-18 02:06:53.189 -07 000000610 INF: Z Motor: After move to -0.130428, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:06:53.189 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:06:53.189 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:06:53.189 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:06:53.189 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:06:53.189 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:06:53.189 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:06:53.189 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:06:53.189 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:06:53.189 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:06:53.189 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:06:53.189 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:06:53.189 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:06:53.189 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:06:53.199 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:06:53.199 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:06:53.199 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:06:53.199 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:06:53.209 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:06:53.209 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:06:53.209 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:06:53.209 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:06:53.209 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28668 150\n [Camera]
17-03-18 02:06:53.409 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 02:06:53.799 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:06:53.799 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:06:53.799 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:06:53.799 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:06:53.799 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:06:53.799 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:06:53.799 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:06:53.809 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:06:53.809 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:06:53.809 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:06:53.989 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28668 778
17-03-18 02:06:54.149 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:06:54.179 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 02:06:54.179 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 02:06:54.179 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:54.179 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 02:06:54.189 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 02:06:54.189 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:54.189 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:06:54.189 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:06:54.189 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:06:54.199 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:06:54.329 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:06:54.329 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:06:54.329 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:06:54.329 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:06:54.329 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:06:54.339 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:06:54.339 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:06:54.339 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:06:54.339 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:06:54.339 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:06:54.519 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:06:54.529 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:06:54.529 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28668 150' command took 2 ms to send, 1310 ms to get response, and 1316 ms overall
17-03-18 02:06:54.529 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:06:54.529 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.130428637710125. ------
17-03-18 02:06:54.529 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:06:54.529 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13684 mm
17-03-18 02:06:54.529 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:06:54.529 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 02:06:54.649 -07 000000576 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-18 02:06:54.649 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:06:54.649 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 117 ms overall
17-03-18 02:06:54.649 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:54.649 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29893, sync = True, waitForSettling = False)
17-03-18 02:06:54.649 -07 000000424 INF: Z Motor: Moving to -0.136841 mm, started at -0.130429 mm, distance = -6.41 um
17-03-18 02:06:54.649 -07 000000579 INF: FPGA: Recv YRDPOS 137979
17-03-18 02:06:54.659 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:06:54.659 -07 000000576 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:54.659 -07 000000576 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:06:54.659 -07 000000576 INF: Y Motor: Moving 1344 steps-21
17-03-18 02:06:54.659 -07 000000424 INF: FPGA: Xmit ZDACW 29893\n [Z Motor]
17-03-18 02:06:54.659 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:06:54.669 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:06:54.669 -07 000000424 INF: FPGA: 'ZDACW 29893' command took 1 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:06:54.679 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:06:54.689 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:06:54.689 -07 000000461 INF: FPGA: Recv ZDACR 29893
17-03-18 02:06:54.699 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:06:54.699 -07 000000424 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 02:06:54.719 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 02:06:54.719 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:06:54.719 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:54.719 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 02:06:54.729 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:06:54.729 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:54.729 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:06:54.729 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:06:54.729 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:06:54.739 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:06:54.869 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:06:54.869 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-18 02:06:55.049 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 02:06:55.049 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:06:55.099 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:55.099 -07 000000579 INF: FPGA: Recv YRDPOS 139686
17-03-18 02:06:55.109 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:06:55.109 -07 000000576 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:55.109 -07 000000576 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 02:06:55.109 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.111 mm/sec
17-03-18 02:06:56.059 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:56.059 -07 000000611 INF: FPGA: Recv YRDPOS 139686
17-03-18 02:06:56.069 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:06:56.069 -07 000000576 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:56.089 -07 000000576 INF: Y Motor: After move to 68.212608, error = -0.006554, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:06:56.089 -07 000000576 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:06:56.089 -07 000000576 INF: Y Motor: Moved to 68.2061 after 1441 ms (table move)
17-03-18 02:06:56.089 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136841 mm (DAC = 29893)
17-03-18 02:06:56.089 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:56.099 -07 000000579 INF: FPGA: Recv ZSGSRD 30596
17-03-18 02:06:56.099 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 02:06:56.099 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:56.099 -07 000000591 INF: FPGA: Recv ZSGSRD 30593
17-03-18 02:06:56.109 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:06:56.109 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:56.109 -07 000000467 INF: FPGA: Recv ZSGSRD 30577
17-03-18 02:06:56.119 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:56.119 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:56.119 -07 000000444 INF: FPGA: Recv ZSGSRD 30593
17-03-18 02:06:56.129 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:56.129 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:56.129 -07 000000579 INF: FPGA: Recv ZSGSRD 30596
17-03-18 02:06:56.139 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:56.139 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:56.139 -07 000000444 INF: FPGA: Recv ZSGSRD 30591
17-03-18 02:06:56.149 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:56.149 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:56.149 -07 000000424 INF: FPGA: Recv ZSGSRD 30585
17-03-18 02:06:56.159 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:56.159 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:56.159 -07 000000444 INF: FPGA: Recv ZSGSRD 30586
17-03-18 02:06:56.169 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:56.169 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:56.169 -07 000000561 INF: FPGA: Recv ZSGSRD 30594
17-03-18 02:06:56.179 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:56.179 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:56.179 -07 000000430 INF: FPGA: Recv ZSGSRD 30595
17-03-18 02:06:56.189 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:56.189 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:06:56.189 -07 000000512 INF: FPGA: Recv ZPIEZORD 26456
17-03-18 02:06:56.199 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:56.199 -07 000000502 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.561 V. Piezo Error = -9.1 V.
17-03-18 02:06:56.199 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30591 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30593 (-136.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30577 (-136.0 uncal um), Max = 30596 (-136.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 14 (0.1 uncal um)
17-03-18 02:06:56.199 -07 000000502 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30591, posNoise = 5, negNoise = 14
17-03-18 02:06:56.199 -07 000000502 INF: Z Motor: After move to -0.136841, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:06:56.199 -07 000000502 INF: Z Motor: Settle wait time = 1444 ms, measure time = 103 ms (allowed 150 ms), total time = 1547 ms
17-03-18 02:06:56.199 -07 000000502 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 02:06:56.249 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1714 ms
17-03-18 02:06:56.249 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:06:56.249 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:06:56.249 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:06:56.249 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:06:56.249 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:06:56.249 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:06:56.249 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:06:56.249 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:06:56.249 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:06:56.259 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:06:56.259 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:06:56.269 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 02:06:56.269 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 02:06:56.269 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:06:56.309 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:06:56.469 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:06:56.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:06:56.609 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:06:56.609 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:06:56.609 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:06:56.619 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:06:56.649 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:06:56.649 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 02:06:56.649 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-18 02:06:56.739 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:06:56.739 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:56.739 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:06:56.739 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:06:56.849 -07 000000502 INF: Autofocus start
17-03-18 02:06:56.849 -07 000000502 INF: MeasureProfile start
17-03-18 02:06:56.849 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:06:56.849 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:06:56.859 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:06:56.859 -07 000000430 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:06:56.859 -07 000000502 INF: MeasureProfile done
17-03-18 02:06:56.859 -07 000000502 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:06:56.859 -07 000000502 INF: Autofocus finished
17-03-18 02:06:57.059 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:06:57.059 -07 000000430 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:06:57.059 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2060546875, Z-position -0.136846425639744. ----------
17-03-18 02:06:57.059 -07 000000610 INF: Cycle	95	Tile	11	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:06:57.069 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28388, sync = True, waitForSettling = True)
17-03-18 02:06:57.069 -07 000000610 INF: Z Motor: Moving to -0.129952 mm, started at -0.136846 mm, distance = 6.89 um
17-03-18 02:06:57.069 -07 000000610 INF: FPGA: Xmit ZDACW 28388\n [Z Motor]
17-03-18 02:06:57.069 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 02:06:57.079 -07 000000610 INF: FPGA: 'ZDACW 28388' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:57.079 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:06:57.079 -07 000000576 INF: FPGA: Recv ZDACR 28388
17-03-18 02:06:57.089 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:57.089 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:06:57.239 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:57.239 -07 000000606 INF: FPGA: Recv ZSGSRD 29516
17-03-18 02:06:57.249 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:06:57.249 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:57.249 -07 000000461 INF: FPGA: Recv ZSGSRD 29524
17-03-18 02:06:57.259 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:57.259 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:57.259 -07 000000467 INF: FPGA: Recv ZSGSRD 29515
17-03-18 02:06:57.269 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:57.269 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:57.269 -07 000000424 INF: FPGA: Recv ZSGSRD 29521
17-03-18 02:06:57.279 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:57.279 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:57.279 -07 000000606 INF: FPGA: Recv ZSGSRD 29521
17-03-18 02:06:57.289 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:57.289 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:57.289 -07 000000591 INF: FPGA: Recv ZSGSRD 29514
17-03-18 02:06:57.299 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:57.299 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:57.299 -07 000000462 INF: FPGA: Recv ZSGSRD 29519
17-03-18 02:06:57.309 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:57.309 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:57.309 -07 000000444 INF: FPGA: Recv ZSGSRD 29516
17-03-18 02:06:57.319 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:57.319 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:57.319 -07 000000611 INF: FPGA: Recv ZSGSRD 29518
17-03-18 02:06:57.329 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:57.329 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:06:57.329 -07 000000467 INF: FPGA: Recv ZSGSRD 29521
17-03-18 02:06:57.339 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:06:57.349 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:06:57.349 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 3.996267,
17-03-18 02:06:57.349 -07 000000591 INF: FPGA: Recv ZPIEZORD 25074
17-03-18 02:06:57.359 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:06:57.359 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.332 V. Piezo Error = -9.8 V.
17-03-18 02:06:57.359 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29518 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29518 (-129.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29514 (-129.1 uncal um), Max = 29524 (-129.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:06:57.359 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29518, posNoise = 6, negNoise = 4
17-03-18 02:06:57.359 -07 000000610 INF: Z Motor: After move to -0.129952, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:06:57.359 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms)
17-03-18 02:06:57.359 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:06:57.359 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:06:57.359 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:06:57.359 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:06:57.359 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:06:57.359 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:06:57.359 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:06:57.359 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:06:57.359 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:06:57.359 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:06:57.359 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:06:57.359 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:06:57.369 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:06:57.369 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:06:57.369 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:06:57.369 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:06:57.379 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:06:57.379 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:06:57.379 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:06:57.379 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:06:57.399 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28564 150\n [Camera]
17-03-18 02:06:57.589 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:06:57.989 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:06:57.989 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:06:57.989 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:06:57.989 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:06:57.989 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:06:57.989 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:06:57.999 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:06:57.999 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-18 02:06:57.999 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:06:57.999 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:06:58.179 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28564 778
17-03-18 02:06:58.329 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:06:58.379 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 02:06:58.379 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:06:58.379 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:58.389 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 02:06:58.389 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:06:58.389 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:58.389 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:06:58.389 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:06:58.399 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:06:58.399 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:06:58.519 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:06:58.519 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:06:58.519 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:06:58.519 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:06:58.519 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:06:58.519 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:06:58.529 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:06:58.529 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:06:58.529 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:06:58.529 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:06:58.709 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:06:58.709 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:06:58.709 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28564 150' command took 2 ms to send, 1307 ms to get response, and 1331 ms overall
17-03-18 02:06:58.839 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:06:58.839 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2060546875, Z-Position -0.129953246011635. ------
17-03-18 02:06:58.839 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:06:58.839 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13657 mm
17-03-18 02:06:58.839 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:06:58.839 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29834, sync = True, waitForSettling = False)
17-03-18 02:06:58.839 -07 000000462 INF: Z Motor: Moving to -0.136571 mm, started at -0.129953 mm, distance = -6.62 um
17-03-18 02:06:58.839 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:06:58.839 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 02:06:58.839 -07 000000576 INF: Y Motor: Moving to 69.0426 mm, started at 68.2061 mm, delta = 0.8366 mm
17-03-18 02:06:58.849 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:06:58.849 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:58.849 -07 000000461 INF: FPGA: Recv YRDPOS 139686
17-03-18 02:06:58.859 -07 000000462 INF: FPGA: Xmit ZDACW 29834\n [Z Motor]
17-03-18 02:06:58.859 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:06:58.859 -07 000000576 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:58.859 -07 000000576 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:06:58.859 -07 000000576 INF: Y Motor: Moving 1338 steps-13
17-03-18 02:06:58.859 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:06:58.869 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:06:58.869 -07 000000462 INF: FPGA: 'ZDACW 29834' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:06:58.879 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:06:58.889 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:06:58.889 -07 000000461 INF: FPGA: Recv ZDACR 29834
17-03-18 02:06:58.899 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:06:58.899 -07 000000462 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 02:06:58.919 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 02:06:58.919 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:06:58.919 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:58.919 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 02:06:58.919 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:06:58.919 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:06:58.919 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:06:58.919 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:06:58.919 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:06:58.929 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 02:06:59.069 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:06:59.069 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:06:59.249 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 02:06:59.249 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:06:59.299 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:06:59.299 -07 000000579 INF: FPGA: Recv YRDPOS 141369
17-03-18 02:06:59.309 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:06:59.309 -07 000000576 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:06:59.309 -07 000000576 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 02:06:59.309 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.107 mm/sec
17-03-18 02:07:00.259 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:07:00.259 -07 000000461 INF: FPGA: Recv YRDPOS 141370
17-03-18 02:07:00.269 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:07:00.269 -07 000000576 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:07:00.289 -07 000000576 INF: Y Motor: After move to 69.042610, error = -0.014290, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:07:00.289 -07 000000576 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:07:00.289 -07 000000576 INF: Y Motor: Moved to 69.0283 after 1449 ms (table move)
17-03-18 02:07:00.299 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136571 mm (DAC = 29834)
17-03-18 02:07:00.299 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:00.299 -07 000000561 INF: FPGA: Recv ZSGSRD 30549
17-03-18 02:07:00.309 -07 000000467 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:07:00.309 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:00.309 -07 000000462 INF: FPGA: Recv ZSGSRD 30543
17-03-18 02:07:00.319 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:00.319 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:00.319 -07 000000561 INF: FPGA: Recv ZSGSRD 30543
17-03-18 02:07:00.329 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:00.329 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:00.329 -07 000000462 INF: FPGA: Recv ZSGSRD 30554
17-03-18 02:07:00.339 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:00.339 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:00.339 -07 000000561 INF: FPGA: Recv ZSGSRD 30556
17-03-18 02:07:00.349 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:00.349 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:00.349 -07 000000462 INF: FPGA: Recv ZSGSRD 30553
17-03-18 02:07:00.359 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:00.359 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:00.359 -07 000000561 INF: FPGA: Recv ZSGSRD 30549
17-03-18 02:07:00.369 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:00.369 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:00.369 -07 000000579 INF: FPGA: Recv ZSGSRD 30547
17-03-18 02:07:00.379 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:00.379 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:00.379 -07 000000561 INF: FPGA: Recv ZSGSRD 30546
17-03-18 02:07:00.388 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:00.388 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:00.388 -07 000000502 INF: FPGA: Recv ZSGSRD 30551
17-03-18 02:07:00.398 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:00.398 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:07:00.398 -07 000000579 INF: FPGA: Recv ZPIEZORD 26445
17-03-18 02:07:00.408 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:00.408 -07 000000467 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.552 V. Piezo Error = -9.0 V.
17-03-18 02:07:00.408 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30549 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30549 (-135.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30543 (-135.7 uncal um), Max = 30556 (-135.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:07:00.408 -07 000000467 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30549, posNoise = 7, negNoise = 6
17-03-18 02:07:00.408 -07 000000467 INF: Z Motor: After move to -0.136571, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:07:00.408 -07 000000467 INF: Z Motor: Settle wait time = 1454 ms, measure time = 108 ms (allowed 150 ms), total time = 1562 ms
17-03-18 02:07:00.408 -07 000000467 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:07:00.458 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 02:07:00.458 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:07:00.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:07:00.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:07:00.458 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:07:00.458 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:07:00.458 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:07:00.458 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:07:00.458 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:07:00.458 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:07:00.468 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:07:00.468 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:07:00.468 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:07:00.468 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:07:00.478 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:07:00.518 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:07:00.818 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:07:00.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:07:00.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:07:00.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:07:00.858 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:07:00.858 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 02:07:00.858 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:07:00.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 02:07:00.948 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:00.948 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:07:00.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-18 02:07:00.958 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:07:00.958 -07 000000579 INF: Autofocus start
17-03-18 02:07:00.958 -07 000000579 INF: MeasureProfile start
17-03-18 02:07:00.958 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:07:00.968 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:07:00.968 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:07:00.968 -07 000000579 INF: MeasureProfile done
17-03-18 02:07:00.968 -07 000000579 INF: X=32  Z correction [um]=0.1299841
17-03-18 02:07:00.968 -07 000000579 INF: Autofocus finished
17-03-18 02:07:01.168 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:07:01.168 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:07:01.168 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0283203125, Z-position -0.13657660872979. ----------
17-03-18 02:07:01.168 -07 000000610 INF: Cycle	95	Tile	12	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:07:01.178 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28375, sync = True, waitForSettling = True)
17-03-18 02:07:01.178 -07 000000610 INF: Z Motor: Moving to -0.129892 mm, started at -0.136577 mm, distance = 6.68 um
17-03-18 02:07:01.178 -07 000000610 INF: FPGA: Xmit ZDACW 28375\n [Z Motor]
17-03-18 02:07:01.178 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:07:01.188 -07 000000610 INF: FPGA: 'ZDACW 28375' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:07:01.188 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:07:01.188 -07 000000569 INF: FPGA: Recv ZDACR 28375
17-03-18 02:07:01.198 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:01.198 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:07:01.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:01.348 -07 000000591 INF: FPGA: Recv ZSGSRD 29508
17-03-18 02:07:01.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:07:01.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:01.358 -07 000000502 INF: FPGA: Recv ZSGSRD 29517
17-03-18 02:07:01.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:01.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:01.368 -07 000000579 INF: FPGA: Recv ZSGSRD 29505
17-03-18 02:07:01.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:01.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:01.378 -07 000000461 INF: FPGA: Recv ZSGSRD 29509
17-03-18 02:07:01.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:01.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:01.388 -07 000000579 INF: FPGA: Recv ZSGSRD 29511
17-03-18 02:07:01.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:01.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:01.398 -07 000000502 INF: FPGA: Recv ZSGSRD 29509
17-03-18 02:07:01.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:01.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:01.408 -07 000000579 INF: FPGA: Recv ZSGSRD 29505
17-03-18 02:07:01.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:01.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:01.418 -07 000000569 INF: FPGA: Recv ZSGSRD 29507
17-03-18 02:07:01.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:01.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:01.428 -07 000000462 INF: FPGA: Recv ZSGSRD 29513
17-03-18 02:07:01.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:01.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:01.438 -07 000000502 INF: FPGA: Recv ZSGSRD 29511
17-03-18 02:07:01.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:01.448 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:07:01.448 -07 000000462 INF: FPGA: Recv ZPIEZORD 25075
17-03-18 02:07:01.458 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:01.458 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.330 V. Piezo Error = -9.7 V.
17-03-18 02:07:01.458 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29510 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29509 (-129.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29505 (-129.1 uncal um), Max = 29517 (-129.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:07:01.458 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29510, posNoise = 7, negNoise = 5
17-03-18 02:07:01.458 -07 000000610 INF: Z Motor: After move to -0.129892, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:07:01.458 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:07:01.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:07:01.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:07:01.458 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:07:01.458 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:07:01.458 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:07:01.458 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:07:01.458 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:07:01.458 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:07:01.458 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:07:01.458 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:07:01.458 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:07:01.458 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:07:01.468 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:07:01.468 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:07:01.468 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:07:01.468 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:07:01.468 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:07:01.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:07:01.478 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:07:01.478 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:07:01.478 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:07:01.478 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:07:01.478 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28552 150\n [Camera]
17-03-18 02:07:01.678 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:07:02.078 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:07:02.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:07:02.078 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:07:02.078 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:07:02.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:07:02.078 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:07:02.078 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:07:02.078 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-18 02:07:02.078 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:07:02.078 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:07:02.268 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28552 778
17-03-18 02:07:02.418 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:07:02.458 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 02:07:02.458 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 02:07:02.458 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:02.458 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:07:02.468 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 02:07:02.468 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:07:02.468 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:02.468 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:07:02.468 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:07:02.468 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:07:02.608 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:07:02.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:07:02.608 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:07:02.608 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:07:02.608 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:07:02.608 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:07:02.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:07:02.608 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:07:02.608 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:07:02.608 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 02:07:02.718 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 3.993549,
17-03-18 02:07:02.798 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:07:02.798 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:07:02.798 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28552 150' command took 2 ms to send, 1313 ms to get response, and 1317 ms overall
17-03-18 02:07:02.798 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:07:02.798 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0283203125, Z-Position -0.129901852314501. ------
17-03-18 02:07:02.798 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:07:02.798 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13634 mm
17-03-18 02:07:02.798 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:07:02.808 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:07:02.808 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:07:02.808 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:07:02.808 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 29784, sync = True, waitForSettling = False)
17-03-18 02:07:02.808 -07 000000579 INF: Z Motor: Moving to -0.136342 mm, started at -0.129902 mm, distance = -6.44 um
17-03-18 02:07:02.808 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 02:07:02.808 -07 000000455 INF: Y Motor: Moving to 69.8726 mm, started at 69.0283 mm, delta = 0.8443 mm
17-03-18 02:07:02.818 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:07:02.818 -07 000000462 INF: FPGA: Recv YRDPOS 141370
17-03-18 02:07:02.828 -07 000000579 INF: FPGA: Xmit ZDACW 29784\n [Z Motor]
17-03-18 02:07:02.828 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:07:02.828 -07 000000455 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:07:02.828 -07 000000455 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:07:02.828 -07 000000455 INF: Y Motor: Moving 1351 steps-30
17-03-18 02:07:02.828 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:07:02.838 -07 000000579 INF: FPGA: 'ZDACW 29784' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:07:02.838 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:07:02.838 -07 000000502 INF: FPGA: Recv ZDACR 29784
17-03-18 02:07:02.848 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:07:02.848 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:02.848 -07 000000579 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 02:07:03.008 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:07:03.008 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:07:03.008 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:03.008 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:07:03.008 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 206 ms overall
17-03-18 02:07:03.008 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:07:03.008 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:07:03.008 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:03.018 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:07:03.018 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 02:07:03.018 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:07:03.028 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:07:03.218 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 02:07:03.218 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-18 02:07:03.268 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:07:03.268 -07 000000502 INF: FPGA: Recv YRDPOS 143081
17-03-18 02:07:03.278 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:07:03.278 -07 000000455 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:07:03.278 -07 000000455 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 02:07:03.278 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.844 mm, average velocity = 2.116 mm/sec
17-03-18 02:07:04.228 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:07:04.228 -07 000000569 INF: FPGA: Recv YRDPOS 143082
17-03-18 02:07:04.238 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:07:04.238 -07 000000455 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:07:04.258 -07 000000455 INF: Y Motor: After move to 69.872612, error = -0.008354, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:07:04.258 -07 000000455 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:07:04.258 -07 000000455 INF: Y Motor: Moved to 69.8643 after 1455 ms (table move)
17-03-18 02:07:04.268 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136342 mm (DAC = 29784)
17-03-18 02:07:04.268 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:04.268 -07 000000579 INF: FPGA: Recv ZSGSRD 30514
17-03-18 02:07:04.278 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:07:04.278 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:04.278 -07 000000462 INF: FPGA: Recv ZSGSRD 30513
17-03-18 02:07:04.288 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:04.288 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:04.288 -07 000000579 INF: FPGA: Recv ZSGSRD 30515
17-03-18 02:07:04.298 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:04.298 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:04.298 -07 000000462 INF: FPGA: Recv ZSGSRD 30509
17-03-18 02:07:04.308 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:04.308 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:04.308 -07 000000502 INF: FPGA: Recv ZSGSRD 30512
17-03-18 02:07:04.318 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:04.318 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:04.318 -07 000000455 INF: FPGA: Recv ZSGSRD 30502
17-03-18 02:07:04.328 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:04.328 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:04.328 -07 000000579 INF: FPGA: Recv ZSGSRD 30510
17-03-18 02:07:04.338 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:04.338 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:04.338 -07 000000502 INF: FPGA: Recv ZSGSRD 30520
17-03-18 02:07:04.348 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:04.348 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:04.348 -07 000000579 INF: FPGA: Recv ZSGSRD 30507
17-03-18 02:07:04.358 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:04.358 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:04.358 -07 000000569 INF: FPGA: Recv ZSGSRD 30507
17-03-18 02:07:04.368 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:07:04.368 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:07:04.368 -07 000000502 INF: FPGA: Recv ZPIEZORD 26423
17-03-18 02:07:04.378 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:04.378 -07 000000561 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.545 V. Piezo Error = -9.0 V.
17-03-18 02:07:04.378 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30511 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30511 (-135.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30502 (-135.5 uncal um), Max = 30520 (-135.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:07:04.378 -07 000000561 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30511, posNoise = 9, negNoise = 9
17-03-18 02:07:04.378 -07 000000561 INF: Z Motor: After move to -0.136342, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:07:04.378 -07 000000561 INF: Z Motor: Settle wait time = 1459 ms, measure time = 107 ms (allowed 150 ms), total time = 1566 ms
17-03-18 02:07:04.378 -07 000000561 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:07:04.428 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 02:07:04.428 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:07:04.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:07:04.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:07:04.428 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:07:04.428 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:07:04.428 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:07:04.428 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:07:04.428 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:07:04.428 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:07:04.438 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:07:04.438 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:07:04.438 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:07:04.438 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:07:04.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:07:04.488 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:07:04.788 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:07:04.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:07:04.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:07:04.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-18 02:07:04.828 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:07:04.828 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 02:07:04.828 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:07:04.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:07:04.908 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:04.908 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:07:04.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:07:04.928 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:07:04.928 -07 000000455 INF: Autofocus start
17-03-18 02:07:04.928 -07 000000455 INF: MeasureProfile start
17-03-18 02:07:04.928 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:07:04.938 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:07:04.938 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:07:04.938 -07 000000455 INF: MeasureProfile done
17-03-18 02:07:04.938 -07 000000455 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:07:04.938 -07 000000455 INF: Autofocus finished
17-03-18 02:07:05.138 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:07:05.138 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:07:05.138 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8642578125, Z-position -0.136332488668404. ----------
17-03-18 02:07:05.138 -07 000000610 INF: Cycle	95	Tile	13	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:07:05.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28291, sync = True, waitForSettling = True)
17-03-18 02:07:05.148 -07 000000610 INF: Z Motor: Moving to -0.129508 mm, started at -0.136332 mm, distance = 6.82 um
17-03-18 02:07:05.148 -07 000000610 INF: FPGA: Xmit ZDACW 28291\n [Z Motor]
17-03-18 02:07:05.148 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:07:05.158 -07 000000610 INF: FPGA: 'ZDACW 28291' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:05.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:07:05.158 -07 000000502 INF: FPGA: Recv ZDACR 28291
17-03-18 02:07:05.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:05.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:07:05.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:05.318 -07 000000462 INF: FPGA: Recv ZSGSRD 29446
17-03-18 02:07:05.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:07:05.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:05.328 -07 000000462 INF: FPGA: Recv ZSGSRD 29449
17-03-18 02:07:05.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:05.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:05.338 -07 000000561 INF: FPGA: Recv ZSGSRD 29453
17-03-18 02:07:05.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:05.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:05.348 -07 000000629 INF: FPGA: Recv ZSGSRD 29451
17-03-18 02:07:05.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:05.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:05.358 -07 000000455 INF: FPGA: Recv ZSGSRD 29455
17-03-18 02:07:05.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:05.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:05.368 -07 000000629 INF: FPGA: Recv ZSGSRD 29447
17-03-18 02:07:05.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:05.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:05.378 -07 000000569 INF: FPGA: Recv ZSGSRD 29444
17-03-18 02:07:05.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:05.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:05.388 -07 000000502 INF: FPGA: Recv ZSGSRD 29453
17-03-18 02:07:05.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:05.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:05.398 -07 000000561 INF: FPGA: Recv ZSGSRD 29444
17-03-18 02:07:05.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:05.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:05.408 -07 000000502 INF: FPGA: Recv ZSGSRD 29451
17-03-18 02:07:05.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:05.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:07:05.418 -07 000000569 INF: FPGA: Recv ZPIEZORD 24992
17-03-18 02:07:05.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:05.428 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.317 V. Piezo Error = -9.8 V.
17-03-18 02:07:05.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29449 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29450 (-128.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29444 (-128.7 uncal um), Max = 29455 (-128.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:07:05.428 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29449, posNoise = 6, negNoise = 5
17-03-18 02:07:05.428 -07 000000610 INF: Z Motor: After move to -0.129508, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:07:05.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:07:05.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:07:05.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:07:05.428 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:07:05.428 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:07:05.428 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:07:05.428 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:07:05.428 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:07:05.428 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:07:05.428 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:07:05.428 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:07:05.428 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:07:05.428 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:07:05.428 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:07:05.428 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:07:05.438 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:07:05.438 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:07:05.438 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:07:05.438 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:07:05.448 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 02:07:05.448 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:07:05.448 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28468 150\n [Camera]
17-03-18 02:07:05.648 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:07:06.038 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:07:06.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:07:06.038 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:07:06.038 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:07:06.038 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:07:06.038 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:07:06.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:07:06.038 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:07:06.038 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:07:06.038 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:07:06.228 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28468 778
17-03-18 02:07:06.378 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:07:06.438 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 02:07:06.438 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:07:06.438 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:06.438 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:07:06.448 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:07:06.448 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:06.448 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:07:06.448 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:07:06.448 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:07:06.458 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:07:06.468 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:07:06.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:07:06.568 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:07:06.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:07:06.568 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:07:06.568 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:07:06.568 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:07:06.578 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:07:06.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:07:06.578 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:07:06.578 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:07:06.578 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:07:06.758 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:07:06.758 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:07:06.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28468 150' command took 2 ms to send, 1309 ms to get response, and 1317 ms overall
17-03-18 02:07:06.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:07:06.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8642578125, Z-Position -0.129509975373853. ------
17-03-18 02:07:06.768 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:07:06.768 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13599 mm
17-03-18 02:07:06.768 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:07:06.768 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:07:06.768 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 02:07:06.768 -07 000000424 INF: Y Motor: Moving to 70.7026 mm, started at 69.8643 mm, delta = 0.8383 mm
17-03-18 02:07:06.768 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 29708, sync = True, waitForSettling = False)
17-03-18 02:07:06.768 -07 000000579 INF: Z Motor: Moving to -0.135995 mm, started at -0.129510 mm, distance = -6.48 um
17-03-18 02:07:06.778 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:07:06.778 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:07:06.778 -07 000000606 INF: FPGA: Recv YRDPOS 143082
17-03-18 02:07:06.788 -07 000000579 INF: FPGA: Xmit ZDACW 29708\n [Z Motor]
17-03-18 02:07:06.788 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:07:06.788 -07 000000424 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:07:06.788 -07 000000424 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:07:06.788 -07 000000424 INF: Y Motor: Moving 1341 steps-18
17-03-18 02:07:06.788 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:07:06.798 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:07:06.798 -07 000000579 INF: FPGA: 'ZDACW 29708' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:07:06.808 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:07:06.928 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:07:06.928 -07 000000512 INF: FPGA: Recv ZDACR 29708
17-03-18 02:07:06.938 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 139 ms overall
17-03-18 02:07:06.938 -07 000000579 INF: Z Motor: MoveAbsStepped took 161 ms (did NOT wait for settling yet))
17-03-18 02:07:06.978 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 02:07:06.978 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:07:06.978 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:06.978 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:07:06.978 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:07:06.978 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:06.978 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:07:06.978 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:07:06.978 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 02:07:06.988 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:07:06.998 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:07:06.998 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:07:07.298 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 02:07:07.298 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 118 ms to send, 376 ms to get response, and 515 ms overall
17-03-18 02:07:07.348 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:07:07.348 -07 000000462 INF: FPGA: Recv YRDPOS 144771
17-03-18 02:07:07.358 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:07:07.358 -07 000000424 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:07:07.358 -07 000000424 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:07:07.358 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 515 ms, distance = 0.838 mm, average velocity = 1.628 mm/sec
17-03-18 02:07:08.078 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 4.028963,
17-03-18 02:07:08.308 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:07:08.308 -07 000000462 INF: FPGA: Recv YRDPOS 144772
17-03-18 02:07:08.318 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:07:08.318 -07 000000424 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:07:08.338 -07 000000424 INF: Y Motor: After move to 70.702606, error = -0.013153, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:07:08.338 -07 000000424 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:07:08.338 -07 000000424 INF: Y Motor: Moved to 70.6895 after 1569 ms (table move)
17-03-18 02:07:08.348 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135995 mm (DAC = 29708)
17-03-18 02:07:08.348 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:08.348 -07 000000424 INF: FPGA: Recv ZSGSRD 30457
17-03-18 02:07:08.358 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:08.358 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:08.358 -07 000000424 INF: FPGA: Recv ZSGSRD 30457
17-03-18 02:07:08.368 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:08.368 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:08.368 -07 000000611 INF: FPGA: Recv ZSGSRD 30457
17-03-18 02:07:08.378 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:08.378 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:08.378 -07 000000579 INF: FPGA: Recv ZSGSRD 30458
17-03-18 02:07:08.388 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:08.388 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:08.388 -07 000000579 INF: FPGA: Recv ZSGSRD 30458
17-03-18 02:07:08.398 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:08.398 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:08.398 -07 000000579 INF: FPGA: Recv ZSGSRD 30464
17-03-18 02:07:08.408 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:08.408 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:08.408 -07 000000579 INF: FPGA: Recv ZSGSRD 30460
17-03-18 02:07:08.418 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:08.418 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:08.418 -07 000000579 INF: FPGA: Recv ZSGSRD 30462
17-03-18 02:07:08.428 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:08.428 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:08.428 -07 000000579 INF: FPGA: Recv ZSGSRD 30457
17-03-18 02:07:08.438 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:08.438 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:08.438 -07 000000462 INF: FPGA: Recv ZSGSRD 30455
17-03-18 02:07:08.448 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:08.448 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:07:08.448 -07 000000579 INF: FPGA: Recv ZPIEZORD 26297
17-03-18 02:07:08.458 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:08.458 -07 000000629 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.533 V. Piezo Error = -9.2 V.
17-03-18 02:07:08.458 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.0 um, Read 10 ADC samples: Avg = 30458 (-135.2 uncal um), Error = 0.8 uncal um, Median = 30458 (-135.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30455 (-135.2 uncal um), Max = 30464 (-135.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:07:08.458 -07 000000629 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30458, posNoise = 6, negNoise = 3
17-03-18 02:07:08.458 -07 000000629 INF: Z Motor: After move to -0.135995, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:07:08.458 -07 000000629 INF: Z Motor: Settle wait time = 1572 ms, measure time = 110 ms (allowed 150 ms), total time = 1682 ms
17-03-18 02:07:08.458 -07 000000629 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:07:08.498 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1725 ms
17-03-18 02:07:08.498 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:07:08.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:07:08.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:07:08.498 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:07:08.498 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:07:08.498 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:07:08.498 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:07:08.508 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:07:08.508 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:07:08.508 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:07:08.508 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:07:08.518 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:07:08.518 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 02:07:08.518 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:07:08.568 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:07:08.868 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:07:08.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:07:08.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:07:08.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:07:08.908 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:07:08.908 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 02:07:08.908 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 02:07:08.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 02:07:08.988 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:08.988 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:07:08.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 02:07:09.008 -07 000000462 INF: Autofocus start
17-03-18 02:07:09.008 -07 000000462 INF: MeasureProfile start
17-03-18 02:07:09.008 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:07:09.008 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:07:09.018 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:07:09.018 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:07:09.018 -07 000000462 INF: MeasureProfile done
17-03-18 02:07:09.018 -07 000000462 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 02:07:09.018 -07 000000462 INF: Autofocus finished
17-03-18 02:07:09.218 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:07:09.218 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 02:07:09.228 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.689453125, Z-position -0.13599200542489. ----------
17-03-18 02:07:09.228 -07 000000610 INF: Cycle	95	Tile	14	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:07:09.228 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28185, sync = True, waitForSettling = True)
17-03-18 02:07:09.228 -07 000000610 INF: Z Motor: Moving to -0.129023 mm, started at -0.135992 mm, distance = 6.97 um
17-03-18 02:07:09.228 -07 000000610 INF: FPGA: Xmit ZDACW 28185\n [Z Motor]
17-03-18 02:07:09.238 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:07:09.238 -07 000000610 INF: FPGA: 'ZDACW 28185' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 02:07:09.238 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:07:09.238 -07 000000569 INF: FPGA: Recv ZDACR 28185
17-03-18 02:07:09.248 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:07:09.248 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:07:09.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:09.398 -07 000000579 INF: FPGA: Recv ZSGSRD 29371
17-03-18 02:07:09.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:07:09.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:09.408 -07 000000462 INF: FPGA: Recv ZSGSRD 29379
17-03-18 02:07:09.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:09.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:09.418 -07 000000579 INF: FPGA: Recv ZSGSRD 29373
17-03-18 02:07:09.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:09.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:09.428 -07 000000455 INF: FPGA: Recv ZSGSRD 29375
17-03-18 02:07:09.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:09.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:09.438 -07 000000606 INF: FPGA: Recv ZSGSRD 29373
17-03-18 02:07:09.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:09.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:09.448 -07 000000569 INF: FPGA: Recv ZSGSRD 29372
17-03-18 02:07:09.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:09.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:09.458 -07 000000579 INF: FPGA: Recv ZSGSRD 29381
17-03-18 02:07:09.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:09.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:09.468 -07 000000629 INF: FPGA: Recv ZSGSRD 29373
17-03-18 02:07:09.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:09.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:09.478 -07 000000579 INF: FPGA: Recv ZSGSRD 29371
17-03-18 02:07:09.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:09.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:09.488 -07 000000569 INF: FPGA: Recv ZSGSRD 29372
17-03-18 02:07:09.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:07:09.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:07:09.498 -07 000000462 INF: FPGA: Recv ZPIEZORD 24910
17-03-18 02:07:09.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:09.508 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.301 V. Piezo Error = -9.8 V.
17-03-18 02:07:09.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.0 um, Read 10 ADC samples: Avg = 29374 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29373 (-128.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29371 (-128.2 uncal um), Max = 29381 (-128.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:07:09.508 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29374, posNoise = 7, negNoise = 3
17-03-18 02:07:09.508 -07 000000610 INF: Z Motor: After move to -0.129023, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:07:09.508 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 02:07:09.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:07:09.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:07:09.508 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:07:09.508 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:07:09.508 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:07:09.508 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:07:09.508 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:07:09.508 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:07:09.508 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:07:09.508 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:07:09.508 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:07:09.508 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:07:09.518 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:07:09.518 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:07:09.518 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:07:09.518 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:07:09.518 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:07:09.518 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:07:09.518 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:07:09.518 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:07:09.528 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28362 150\n [Camera]
17-03-18 02:07:09.728 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:07:10.118 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:07:10.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:07:10.118 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:07:10.118 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:07:10.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:07:10.128 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:07:10.128 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:07:10.128 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start.
17-03-18 02:07:10.128 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:07:10.128 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:07:10.318 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28362 780
17-03-18 02:07:10.458 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:07:10.498 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 02:07:10.498 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 02:07:10.508 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:10.508 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 02:07:10.508 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 02:07:10.508 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:10.508 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:07:10.508 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:07:10.508 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:07:10.518 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:07:10.648 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:07:10.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:07:10.648 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:07:10.658 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:07:10.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:07:10.658 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:07:10.658 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:07:10.658 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 02:07:10.668 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:07:10.668 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:07:10.838 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:07:10.848 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:07:10.848 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28362 150' command took 2 ms to send, 1310 ms to get response, and 1316 ms overall
17-03-18 02:07:10.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:07:10.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.689453125, Z-Position -0.129028159463221. ------
17-03-18 02:07:10.968 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13570 mm
17-03-18 02:07:10.968 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:07:10.968 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:07:10.968 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 02:07:10.968 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 29645, sync = True, waitForSettling = False)
17-03-18 02:07:10.968 -07 000000455 INF: Z Motor: Moving to -0.135706 mm, started at -0.129028 mm, distance = -6.68 um
17-03-18 02:07:10.968 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:07:10.978 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:07:10.978 -07 000000455 INF: FPGA: Xmit ZDACW 29645\n [Z Motor]
17-03-18 02:07:10.978 -07 000000629 INF: Y Motor: Moving to 71.5326 mm, started at 70.6895 mm, delta = 0.8432 mm
17-03-18 02:07:10.978 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:07:10.988 -07 000000455 INF: FPGA: 'ZDACW 29645' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:07:10.988 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:07:10.998 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:07:10.998 -07 000000430 INF: FPGA: Recv YRDPOS 144772
17-03-18 02:07:11.008 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:07:11.008 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:07:11.008 -07 000000629 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:07:11.008 -07 000000629 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:07:11.008 -07 000000629 INF: Y Motor: Moving 1349 steps-28
17-03-18 02:07:11.008 -07 000000444 INF: FPGA: Recv ZDACR 29645
17-03-18 02:07:11.018 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:07:11.018 -07 000000455 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 02:07:11.018 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:07:11.048 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 02:07:11.048 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:07:11.048 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:11.048 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 02:07:11.058 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:07:11.058 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:11.058 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:07:11.058 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:07:11.058 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:07:11.068 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 02:07:11.188 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:07:11.188 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 02:07:11.388 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 02:07:11.388 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:07:11.438 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:07:11.438 -07 000000502 INF: FPGA: Recv YRDPOS 146472
17-03-18 02:07:11.448 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:07:11.448 -07 000000629 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:07:11.448 -07 000000629 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 02:07:11.448 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.843 mm, average velocity = 2.173 mm/sec
17-03-18 02:07:11.468 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:07:11.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:07:12.397 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:07:12.397 -07 000000455 INF: FPGA: Recv YRDPOS 146472
17-03-18 02:07:12.407 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:07:12.407 -07 000000629 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:07:12.427 -07 000000629 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:07:12.427 -07 000000629 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:07:12.427 -07 000000629 INF: Y Motor: Moved to 71.5195 after 1458 ms (table move)
17-03-18 02:07:12.437 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135706 mm (DAC = 29645)
17-03-18 02:07:12.437 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:12.437 -07 000000611 INF: FPGA: Recv ZSGSRD 30412
17-03-18 02:07:12.447 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:07:12.447 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:12.447 -07 000000444 INF: FPGA: Recv ZSGSRD 30412
17-03-18 02:07:12.457 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:12.457 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:12.457 -07 000000444 INF: FPGA: Recv ZSGSRD 30418
17-03-18 02:07:12.467 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:12.467 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:12.467 -07 000000444 INF: FPGA: Recv ZSGSRD 30418
17-03-18 02:07:12.477 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:12.477 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:12.477 -07 000000444 INF: FPGA: Recv ZSGSRD 30419
17-03-18 02:07:12.487 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:12.487 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:12.487 -07 000000444 INF: FPGA: Recv ZSGSRD 30415
17-03-18 02:07:12.497 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:12.497 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:12.497 -07 000000629 INF: FPGA: Recv ZSGSRD 30410
17-03-18 02:07:12.507 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:12.507 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:12.507 -07 000000629 INF: FPGA: Recv ZSGSRD 30408
17-03-18 02:07:12.517 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:12.517 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:12.517 -07 000000444 INF: FPGA: Recv ZSGSRD 30411
17-03-18 02:07:12.527 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:12.527 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:12.527 -07 000000444 INF: FPGA: Recv ZSGSRD 30416
17-03-18 02:07:12.537 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:12.537 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:07:12.537 -07 000000444 INF: FPGA: Recv ZPIEZORD 26285
17-03-18 02:07:12.547 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:12.547 -07 000000579 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.524 V. Piezo Error = -9.1 V.
17-03-18 02:07:12.547 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30414 (-134.9 uncal um), Error = 0.8 uncal um, Median = 30414 (-134.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30408 (-134.9 uncal um), Max = 30419 (-134.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:07:12.547 -07 000000579 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30414, posNoise = 5, negNoise = 6
17-03-18 02:07:12.547 -07 000000579 INF: Z Motor: After move to -0.135706, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:07:12.547 -07 000000579 INF: Z Motor: Settle wait time = 1461 ms, measure time = 109 ms (allowed 150 ms), total time = 1570 ms
17-03-18 02:07:12.547 -07 000000579 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:07:12.597 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 02:07:12.597 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:07:12.597 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:07:12.597 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:07:12.597 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:07:12.597 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:07:12.597 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:07:12.597 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:07:12.597 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:07:12.597 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:07:12.607 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:07:12.607 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:07:12.617 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:07:12.617 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:07:12.617 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:07:12.667 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:07:12.967 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:07:12.967 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:07:12.967 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:07:12.967 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:07:12.997 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:07:13.007 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 02:07:13.007 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:07:13.077 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:07:13.077 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:13.087 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:07:13.087 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:07:13.107 -07 000000462 INF: Autofocus start
17-03-18 02:07:13.107 -07 000000462 INF: MeasureProfile start
17-03-18 02:07:13.107 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:07:13.117 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:07:13.117 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:07:13.117 -07 000000462 INF: MeasureProfile done
17-03-18 02:07:13.117 -07 000000462 INF: X=32  Z correction [um]=0.1299841
17-03-18 02:07:13.117 -07 000000462 INF: Autofocus finished
17-03-18 02:07:13.127 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:07:13.327 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:07:13.327 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-18 02:07:13.327 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.135709340090653. ----------
17-03-18 02:07:13.327 -07 000000610 INF: Cycle	95	Tile	15	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:07:13.337 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28186, sync = True, waitForSettling = True)
17-03-18 02:07:13.337 -07 000000610 INF: Z Motor: Moving to -0.129027 mm, started at -0.135709 mm, distance = 6.68 um
17-03-18 02:07:13.337 -07 000000610 INF: FPGA: Xmit ZDACW 28186\n [Z Motor]
17-03-18 02:07:13.337 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:07:13.347 -07 000000610 INF: FPGA: 'ZDACW 28186' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:07:13.347 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:07:13.347 -07 000000502 INF: FPGA: Recv ZDACR 28186
17-03-18 02:07:13.357 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:13.357 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:07:13.437 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 4.003063,
17-03-18 02:07:13.507 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:13.507 -07 000000455 INF: FPGA: Recv ZSGSRD 29377
17-03-18 02:07:13.517 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:07:13.517 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:13.517 -07 000000455 INF: FPGA: Recv ZSGSRD 29376
17-03-18 02:07:13.527 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:13.527 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:13.527 -07 000000444 INF: FPGA: Recv ZSGSRD 29367
17-03-18 02:07:13.537 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:13.537 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:13.537 -07 000000444 INF: FPGA: Recv ZSGSRD 29378
17-03-18 02:07:13.547 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:13.547 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:13.547 -07 000000444 INF: FPGA: Recv ZSGSRD 29377
17-03-18 02:07:13.557 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:13.557 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:13.557 -07 000000444 INF: FPGA: Recv ZSGSRD 29372
17-03-18 02:07:13.567 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:13.567 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:13.567 -07 000000569 INF: FPGA: Recv ZSGSRD 29374
17-03-18 02:07:13.577 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:13.577 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:13.577 -07 000000629 INF: FPGA: Recv ZSGSRD 29378
17-03-18 02:07:13.587 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:13.587 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:13.587 -07 000000606 INF: FPGA: Recv ZSGSRD 29379
17-03-18 02:07:13.597 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:13.597 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:13.597 -07 000000467 INF: FPGA: Recv ZSGSRD 29373
17-03-18 02:07:13.607 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:13.607 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:07:13.607 -07 000000444 INF: FPGA: Recv ZPIEZORD 24935
17-03-18 02:07:13.617 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:13.617 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.301 V. Piezo Error = -9.7 V.
17-03-18 02:07:13.617 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.0 um, Read 10 ADC samples: Avg = 29375 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29376 (-128.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29367 (-128.2 uncal um), Max = 29379 (-128.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:07:13.617 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29375, posNoise = 4, negNoise = 8
17-03-18 02:07:13.617 -07 000000610 INF: Z Motor: After move to -0.129027, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:07:13.617 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:07:13.617 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:07:13.617 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:07:13.617 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:07:13.617 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:07:13.617 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:07:13.617 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:07:13.617 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:07:13.617 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:07:13.617 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:07:13.617 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:07:13.617 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:07:13.617 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:07:13.627 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:07:13.627 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:07:13.627 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:07:13.627 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:07:13.637 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:07:13.637 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:07:13.637 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:07:13.637 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:07:13.637 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28362 150\n [Camera]
17-03-18 02:07:13.837 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:07:14.227 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:07:14.227 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:07:14.227 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:07:14.237 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:07:14.237 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:07:14.237 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:07:14.237 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:07:14.237 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:07:14.237 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:07:14.237 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-18 02:07:14.427 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28362 778
17-03-18 02:07:14.567 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:07:14.607 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 02:07:14.607 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 02:07:14.607 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:14.617 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:07:14.617 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:07:14.617 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 02:07:14.617 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 02:07:14.617 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:14.617 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:07:14.637 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:07:14.757 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:07:14.757 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:07:14.767 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:07:14.767 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:07:14.767 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:07:14.767 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:07:14.767 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-18 02:07:14.767 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:07:14.767 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:07:14.767 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 02:07:14.957 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:07:14.957 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:07:14.957 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28362 150' command took 2 ms to send, 1312 ms to get response, and 1317 ms overall
17-03-18 02:07:14.957 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:07:14.957 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51953125, Z-Position -0.129034583675363. ------
17-03-18 02:07:14.967 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13539 mm
17-03-18 02:07:14.967 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:07:14.967 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:07:14.967 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:07:14.967 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29575, sync = True, waitForSettling = False)
17-03-18 02:07:14.967 -07 000000569 INF: Z Motor: Moving to -0.135386 mm, started at -0.129035 mm, distance = -6.35 um
17-03-18 02:07:14.967 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 02:07:14.967 -07 000000606 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-18 02:07:14.977 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:07:14.977 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:07:14.977 -07 000000444 INF: FPGA: Recv YRDPOS 146473
17-03-18 02:07:14.987 -07 000000569 INF: FPGA: Xmit ZDACW 29575\n [Z Motor]
17-03-18 02:07:14.987 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:07:14.987 -07 000000606 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:07:14.987 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:07:14.997 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:07:14.997 -07 000000569 INF: FPGA: 'ZDACW 29575' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:07:14.997 -07 000000606 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:07:14.997 -07 000000606 INF: Y Motor: Moving 1348 steps-27
17-03-18 02:07:15.007 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:07:15.017 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:07:15.017 -07 000000611 INF: FPGA: Recv ZDACR 29575
17-03-18 02:07:15.027 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:07:15.027 -07 000000569 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 02:07:15.147 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 02:07:15.147 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:07:15.147 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:15.147 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 02:07:15.147 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:07:15.147 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:15.147 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:07:15.157 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:07:15.157 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:07:15.157 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:07:15.197 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:07:15.197 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:07:15.377 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 02:07:15.377 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 02:07:15.427 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:07:15.427 -07 000000569 INF: FPGA: Recv YRDPOS 148173
17-03-18 02:07:15.437 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:07:15.437 -07 000000606 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:07:15.437 -07 000000606 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-18 02:07:15.437 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.843 mm, average velocity = 2.196 mm/sec
17-03-18 02:07:16.387 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:07:16.387 -07 000000611 INF: FPGA: Recv YRDPOS 148174
17-03-18 02:07:16.397 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:07:16.397 -07 000000606 INF: Y Motor: Encoder = 148174 = motor step 115760.9 = 72.3506 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:07:16.417 -07 000000606 INF: Y Motor: After move to 72.362610, error = -0.012024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:07:16.417 -07 000000606 INF: Y Motor: Position error after settling (table move) = -25 encoder counts (-0.012 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:07:16.417 -07 000000606 INF: Y Motor: Moved to 72.3506 after 1448 ms (table move)
17-03-18 02:07:16.427 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135386 mm (DAC = 29575)
17-03-18 02:07:16.427 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:16.427 -07 000000430 INF: FPGA: Recv ZSGSRD 30359
17-03-18 02:07:16.437 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:07:16.437 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:16.437 -07 000000611 INF: FPGA: Recv ZSGSRD 30360
17-03-18 02:07:16.447 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:16.447 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:16.447 -07 000000629 INF: FPGA: Recv ZSGSRD 30372
17-03-18 02:07:16.457 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:16.457 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:16.457 -07 000000611 INF: FPGA: Recv ZSGSRD 30367
17-03-18 02:07:16.467 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:16.467 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:16.467 -07 000000462 INF: FPGA: Recv ZSGSRD 30365
17-03-18 02:07:16.467 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:07:16.467 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:07:16.477 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:16.477 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:16.477 -07 000000444 INF: FPGA: Recv ZSGSRD 30365
17-03-18 02:07:16.487 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:16.487 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:16.487 -07 000000611 INF: FPGA: Recv ZSGSRD 30364
17-03-18 02:07:16.497 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:16.497 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:16.497 -07 000000462 INF: FPGA: Recv ZSGSRD 30364
17-03-18 02:07:16.507 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:16.507 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:16.507 -07 000000590 INF: FPGA: Recv ZSGSRD 30360
17-03-18 02:07:16.517 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:16.517 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:16.517 -07 000000444 INF: FPGA: Recv ZSGSRD 30368
17-03-18 02:07:16.527 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:16.527 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:07:16.527 -07 000000629 INF: FPGA: Recv ZPIEZORD 26250
17-03-18 02:07:16.537 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:16.537 -07 000000467 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.513 V. Piezo Error = -9.1 V.
17-03-18 02:07:16.537 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30364 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30364 (-134.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30359 (-134.6 uncal um), Max = 30372 (-134.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:07:16.537 -07 000000467 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30364, posNoise = 8, negNoise = 5
17-03-18 02:07:16.537 -07 000000467 INF: Z Motor: After move to -0.135386, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:07:16.537 -07 000000467 INF: Z Motor: Settle wait time = 1453 ms, measure time = 108 ms (allowed 150 ms), total time = 1561 ms
17-03-18 02:07:16.537 -07 000000467 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:07:16.587 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 02:07:16.587 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:07:16.587 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:07:16.587 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:07:16.587 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:07:16.587 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:07:16.587 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:07:16.587 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:07:16.587 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 02:07:16.587 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:07:16.597 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:07:16.597 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:07:16.607 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:07:16.607 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 20 ms.
17-03-18 02:07:16.607 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:07:16.657 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:07:16.957 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:07:16.957 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:07:16.957 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:07:16.957 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 02:07:16.997 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:07:16.997 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 02:07:16.997 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 385 ms overall
17-03-18 02:07:17.077 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 121 ms.
17-03-18 02:07:17.077 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:17.077 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:07:17.077 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 02:07:17.097 -07 000000611 INF: Autofocus start
17-03-18 02:07:17.097 -07 000000611 INF: MeasureProfile start
17-03-18 02:07:17.097 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:07:17.097 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:07:17.107 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:07:17.107 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:07:17.117 -07 000000611 INF: MeasureProfile done
17-03-18 02:07:17.117 -07 000000611 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:07:17.117 -07 000000611 INF: Autofocus finished
17-03-18 02:07:17.307 -07 000000430 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:07:17.307 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:07:17.307 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3505859375, Z-position -0.135388129483565. ----------
17-03-18 02:07:17.307 -07 000000610 INF: Cycle	95	Tile	16	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:07:17.317 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28082, sync = True, waitForSettling = True)
17-03-18 02:07:17.317 -07 000000610 INF: Z Motor: Moving to -0.128551 mm, started at -0.135388 mm, distance = 6.84 um
17-03-18 02:07:17.317 -07 000000610 INF: FPGA: Xmit ZDACW 28082\n [Z Motor]
17-03-18 02:07:17.317 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:07:17.327 -07 000000610 INF: FPGA: 'ZDACW 28082' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:07:17.327 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:07:17.327 -07 000000467 INF: FPGA: Recv ZDACR 28082
17-03-18 02:07:17.337 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:17.337 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:07:17.487 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:17.487 -07 000000606 INF: FPGA: Recv ZSGSRD 29300
17-03-18 02:07:17.497 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:17.497 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:17.497 -07 000000467 INF: FPGA: Recv ZSGSRD 29303
17-03-18 02:07:17.507 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:17.507 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:17.507 -07 000000590 INF: FPGA: Recv ZSGSRD 29300
17-03-18 02:07:17.517 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:17.517 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:17.517 -07 000000467 INF: FPGA: Recv ZSGSRD 29296
17-03-18 02:07:17.527 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:17.527 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:17.527 -07 000000590 INF: FPGA: Recv ZSGSRD 29303
17-03-18 02:07:17.537 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:17.537 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:17.537 -07 000000569 INF: FPGA: Recv ZSGSRD 29299
17-03-18 02:07:17.547 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:17.547 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:17.547 -07 000000590 INF: FPGA: Recv ZSGSRD 29302
17-03-18 02:07:17.557 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:17.557 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:17.557 -07 000000569 INF: FPGA: Recv ZSGSRD 29304
17-03-18 02:07:17.567 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:17.567 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:17.567 -07 000000590 INF: FPGA: Recv ZSGSRD 29294
17-03-18 02:07:17.577 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:17.577 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:17.577 -07 000000467 INF: FPGA: Recv ZSGSRD 29301
17-03-18 02:07:17.587 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:17.587 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:07:17.587 -07 000000590 INF: FPGA: Recv ZPIEZORD 24876
17-03-18 02:07:17.597 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:17.597 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.285 V. Piezo Error = -9.7 V.
17-03-18 02:07:17.597 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29300 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29300 (-127.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29294 (-127.7 uncal um), Max = 29304 (-127.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:07:17.597 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29300, posNoise = 4, negNoise = 6
17-03-18 02:07:17.597 -07 000000610 INF: Z Motor: After move to -0.128551, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:07:17.597 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:07:17.597 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:07:17.597 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:07:17.597 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:07:17.597 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:07:17.597 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:07:17.597 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:07:17.597 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:07:17.597 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:07:17.597 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:07:17.597 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:07:17.597 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:07:17.597 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:07:17.607 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:07:17.607 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:07:17.607 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:07:17.607 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:07:17.617 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:07:17.617 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:07:17.617 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:07:17.617 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:07:17.617 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28259 150\n [Camera]
17-03-18 02:07:17.817 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:07:18.207 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:07:18.207 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:07:18.207 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:07:18.207 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:07:18.207 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:07:18.217 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:07:18.217 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:07:18.217 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:07:18.217 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:07:18.217 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:07:18.407 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28259 778
17-03-18 02:07:18.557 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:07:18.587 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 02:07:18.587 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:07:18.587 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:18.587 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 02:07:18.587 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:07:18.597 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:18.597 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:07:18.597 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:07:18.597 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:07:18.607 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:07:18.737 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:07:18.737 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:07:18.747 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:07:18.747 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:07:18.747 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:07:18.747 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:07:18.747 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:07:18.747 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:07:18.747 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:07:18.747 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:07:18.797 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 3.986717,
17-03-18 02:07:18.937 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:07:18.937 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:07:18.937 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28259 150' command took 2 ms to send, 1311 ms to get response, and 1317 ms overall
17-03-18 02:07:18.937 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:07:18.937 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.3505859375, Z-Position -0.128552767764731. ------
17-03-18 02:07:18.937 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:07:18.937 -07 000000430 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13508 mm
17-03-18 02:07:18.937 -07 000000430 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:07:19.067 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:07:19.067 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 124 ms overall
17-03-18 02:07:19.067 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:07:19.067 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 02:07:19.067 -07 000000606 INF: Y Motor: Moving to 73.1926 mm, started at 72.3506 mm, delta = 0.8420 mm
17-03-18 02:07:19.067 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29509, sync = True, waitForSettling = False)
17-03-18 02:07:19.067 -07 000000462 INF: Z Motor: Moving to -0.135084 mm, started at -0.128553 mm, distance = -6.53 um
17-03-18 02:07:19.077 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:07:19.077 -07 000000444 INF: FPGA: Recv YRDPOS 148174
17-03-18 02:07:19.087 -07 000000462 INF: FPGA: Xmit ZDACW 29509\n [Z Motor]
17-03-18 02:07:19.087 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:07:19.087 -07 000000606 INF: Y Motor: Encoder = 148174 = motor step 115760.9 = 72.3506 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:07:19.087 -07 000000606 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:07:19.087 -07 000000606 INF: Y Motor: Moving 1347 steps-26
17-03-18 02:07:19.087 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:07:19.097 -07 000000462 INF: FPGA: 'ZDACW 29509' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:07:19.097 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:07:19.097 -07 000000444 INF: FPGA: Recv ZDACR 29509
17-03-18 02:07:19.107 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:07:19.107 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:19.107 -07 000000462 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 02:07:19.137 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 02:07:19.137 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:07:19.137 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:07:19.137 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:19.137 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:07:19.137 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:19.147 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:07:19.147 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:07:19.147 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:07:19.147 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:07:19.267 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:07:19.267 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 02:07:19.477 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 02:07:19.477 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:07:19.527 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:07:19.527 -07 000000591 INF: FPGA: Recv YRDPOS 149866
17-03-18 02:07:19.537 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:07:19.537 -07 000000606 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:07:19.537 -07 000000606 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 02:07:19.537 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.842 mm, average velocity = 2.121 mm/sec
17-03-18 02:07:20.487 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:07:20.487 -07 000000590 INF: FPGA: Recv YRDPOS 149866
17-03-18 02:07:20.497 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:07:20.497 -07 000000606 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:07:20.517 -07 000000606 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:07:20.517 -07 000000606 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:07:20.517 -07 000000606 INF: Y Motor: Moved to 73.1768 after 1456 ms (table move)
17-03-18 02:07:20.527 -07 000000430 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135084 mm (DAC = 29509)
17-03-18 02:07:20.527 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:20.527 -07 000000611 INF: FPGA: Recv ZSGSRD 30328
17-03-18 02:07:20.537 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:07:20.537 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:20.537 -07 000000590 INF: FPGA: Recv ZSGSRD 30315
17-03-18 02:07:20.547 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:20.547 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:20.547 -07 000000462 INF: FPGA: Recv ZSGSRD 30316
17-03-18 02:07:20.557 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:20.557 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:20.557 -07 000000590 INF: FPGA: Recv ZSGSRD 30322
17-03-18 02:07:20.567 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:20.567 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:20.567 -07 000000606 INF: FPGA: Recv ZSGSRD 30318
17-03-18 02:07:20.577 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:20.577 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:20.577 -07 000000462 INF: FPGA: Recv ZSGSRD 30325
17-03-18 02:07:20.587 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:20.587 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:20.587 -07 000000590 INF: FPGA: Recv ZSGSRD 30310
17-03-18 02:07:20.597 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:20.597 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:20.597 -07 000000611 INF: FPGA: Recv ZSGSRD 30312
17-03-18 02:07:20.607 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:20.607 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:20.607 -07 000000590 INF: FPGA: Recv ZSGSRD 30312
17-03-18 02:07:20.617 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:20.617 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:20.617 -07 000000611 INF: FPGA: Recv ZSGSRD 30313
17-03-18 02:07:20.627 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:20.627 -07 000000430 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:07:20.627 -07 000000590 INF: FPGA: Recv ZPIEZORD 26219
17-03-18 02:07:20.637 -07 000000430 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:20.637 -07 000000430 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.503 V. Piezo Error = -9.0 V.
17-03-18 02:07:20.637 -07 000000430 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.1 um, Read 10 ADC samples: Avg = 30317 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30316 (-134.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30310 (-134.3 uncal um), Max = 30328 (-134.4 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:07:20.637 -07 000000430 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30317, posNoise = 11, negNoise = 7
17-03-18 02:07:20.637 -07 000000430 INF: Z Motor: After move to -0.135084, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:07:20.637 -07 000000430 INF: Z Motor: Settle wait time = 1460 ms, measure time = 108 ms (allowed 150 ms), total time = 1568 ms
17-03-18 02:07:20.637 -07 000000430 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:07:20.687 -07 000000430 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1743 ms
17-03-18 02:07:20.687 -07 000000430 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:07:20.687 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:07:20.687 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:07:20.687 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:07:20.687 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:07:20.687 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:07:20.687 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:07:20.687 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:07:20.687 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:07:20.697 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:07:20.697 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:07:20.697 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:07:20.697 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:07:20.707 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:07:20.757 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:07:21.057 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:07:21.057 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:07:21.057 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:07:21.057 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:07:21.087 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:07:21.087 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 02:07:21.087 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:07:21.167 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 02:07:21.167 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:21.167 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:07:21.167 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 02:07:21.187 -07 000000444 INF: Autofocus start
17-03-18 02:07:21.187 -07 000000444 INF: MeasureProfile start
17-03-18 02:07:21.187 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:07:21.187 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:07:21.197 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:07:21.197 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:07:21.197 -07 000000444 INF: MeasureProfile done
17-03-18 02:07:21.197 -07 000000444 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:07:21.197 -07 000000444 INF: Autofocus finished
17-03-18 02:07:21.397 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:07:21.397 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:07:21.397 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.135086191512902. ----------
17-03-18 02:07:21.397 -07 000000610 INF: Cycle	95	Tile	17	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:07:21.407 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28033, sync = True, waitForSettling = True)
17-03-18 02:07:21.407 -07 000000610 INF: Z Motor: Moving to -0.128327 mm, started at -0.135086 mm, distance = 6.76 um
17-03-18 02:07:21.407 -07 000000610 INF: FPGA: Xmit ZDACW 28033\n [Z Motor]
17-03-18 02:07:21.407 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:07:21.417 -07 000000610 INF: FPGA: 'ZDACW 28033' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:21.417 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:07:21.417 -07 000000590 INF: FPGA: Recv ZDACR 28033
17-03-18 02:07:21.427 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:21.427 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:07:21.467 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:07:21.467 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:07:21.577 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:21.577 -07 000000430 INF: FPGA: Recv ZSGSRD 29268
17-03-18 02:07:21.587 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:07:21.587 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:21.587 -07 000000462 INF: FPGA: Recv ZSGSRD 29269
17-03-18 02:07:21.597 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:21.597 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:21.597 -07 000000591 INF: FPGA: Recv ZSGSRD 29264
17-03-18 02:07:21.607 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:21.607 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:21.607 -07 000000611 INF: FPGA: Recv ZSGSRD 29264
17-03-18 02:07:21.617 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:21.617 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:21.617 -07 000000444 INF: FPGA: Recv ZSGSRD 29272
17-03-18 02:07:21.627 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:21.627 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:21.627 -07 000000590 INF: FPGA: Recv ZSGSRD 29263
17-03-18 02:07:21.637 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:21.637 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:21.637 -07 000000611 INF: FPGA: Recv ZSGSRD 29270
17-03-18 02:07:21.647 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:07:21.647 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:21.647 -07 000000591 INF: FPGA: Recv ZSGSRD 29260
17-03-18 02:07:21.657 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:21.657 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:21.657 -07 000000590 INF: FPGA: Recv ZSGSRD 29266
17-03-18 02:07:21.667 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:21.667 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:21.667 -07 000000606 INF: FPGA: Recv ZSGSRD 29268
17-03-18 02:07:21.677 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:21.677 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:07:21.677 -07 000000462 INF: FPGA: Recv ZPIEZORD 24814
17-03-18 02:07:21.687 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:21.687 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.278 V. Piezo Error = -9.8 V.
17-03-18 02:07:21.687 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29266 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29267 (-127.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29260 (-127.5 uncal um), Max = 29272 (-127.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:07:21.687 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29266, posNoise = 6, negNoise = 6
17-03-18 02:07:21.687 -07 000000610 INF: Z Motor: After move to -0.128327, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:07:21.687 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:07:21.687 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:07:21.687 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:07:21.687 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:07:21.687 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:07:21.687 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:07:21.687 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:07:21.687 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:07:21.687 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:07:21.687 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:07:21.687 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:07:21.687 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:07:21.687 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:07:21.697 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:07:21.697 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:07:21.697 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:07:21.697 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:07:21.697 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:07:21.697 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 02:07:21.707 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:07:21.707 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:07:21.707 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28210 150\n [Camera]
17-03-18 02:07:21.907 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:07:22.307 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:07:22.307 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:07:22.307 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:07:22.307 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:07:22.307 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:07:22.307 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:07:22.307 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:07:22.307 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-18 02:07:22.307 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:07:22.307 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:07:22.497 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28210 778
17-03-18 02:07:22.646 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:07:22.706 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:07:22.706 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:07:22.706 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:22.706 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 02:07:22.706 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:07:22.706 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:22.706 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:07:22.706 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:07:22.706 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:07:22.716 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:07:22.836 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:07:22.836 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:07:22.836 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:07:22.836 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:07:22.836 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:07:22.836 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:07:22.846 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:07:22.846 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:07:22.846 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:07:22.846 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:07:23.026 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:07:23.026 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:07:23.026 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28210 150' command took 2 ms to send, 1314 ms to get response, and 1320 ms overall
17-03-18 02:07:23.026 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:07:23.026 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1767578125, Z-Position -0.128334344551911. ------
17-03-18 02:07:23.146 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:07:23.146 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13472 mm
17-03-18 02:07:23.146 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:07:23.146 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 02:07:23.146 -07 000000444 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-18 02:07:23.146 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 29429, sync = True, waitForSettling = False)
17-03-18 02:07:23.146 -07 000000590 INF: Z Motor: Moving to -0.134717 mm, started at -0.128334 mm, distance = -6.38 um
17-03-18 02:07:23.146 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:07:23.156 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:07:23.156 -07 000000590 INF: FPGA: Xmit ZDACW 29429\n [Z Motor]
17-03-18 02:07:23.156 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:07:23.166 -07 000000590 INF: FPGA: 'ZDACW 29429' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:07:23.166 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:07:23.176 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:07:23.176 -07 000000561 INF: FPGA: Recv YRDPOS 149867
17-03-18 02:07:23.186 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 02:07:23.186 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:07:23.186 -07 000000444 INF: Y Motor: Encoder = 149867 = motor step 117083.6 = 73.1772 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:07:23.186 -07 000000561 INF: FPGA: Recv ZDACR 29429
17-03-18 02:07:23.186 -07 000000444 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:07:23.186 -07 000000444 INF: Y Motor: Moving 1353 steps-32
17-03-18 02:07:23.196 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:07:23.196 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:07:23.196 -07 000000590 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 02:07:23.236 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 02:07:23.236 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:07:23.236 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:23.236 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:07:23.236 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 02:07:23.236 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:07:23.236 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:23.236 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:07:23.236 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 02:07:23.246 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 02:07:23.366 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:07:23.366 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 218 ms overall
17-03-18 02:07:23.566 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 02:07:23.566 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 02:07:23.606 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:07:23.606 -07 000000606 INF: FPGA: Recv YRDPOS 151570
17-03-18 02:07:23.616 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:07:23.616 -07 000000444 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:07:23.616 -07 000000444 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:07:23.616 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.846 mm, average velocity = 2.203 mm/sec
17-03-18 02:07:24.156 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 4.02213,
17-03-18 02:07:24.566 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:07:24.566 -07 000000462 INF: FPGA: Recv YRDPOS 151571
17-03-18 02:07:24.576 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:24.576 -07 000000444 INF: Y Motor: Encoder = 151571 = motor step 118414.8 = 74.0093 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:07:24.596 -07 000000444 INF: Y Motor: After move to 74.022606, error = -0.013329, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:07:24.596 -07 000000444 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:07:24.596 -07 000000444 INF: Y Motor: Moved to 74.0093 after 1443 ms (table move)
17-03-18 02:07:24.596 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134717 mm (DAC = 29429)
17-03-18 02:07:24.596 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:24.596 -07 000000611 INF: FPGA: Recv ZSGSRD 30254
17-03-18 02:07:24.606 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:07:24.606 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:24.606 -07 000000611 INF: FPGA: Recv ZSGSRD 30254
17-03-18 02:07:24.616 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:24.616 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:24.616 -07 000000611 INF: FPGA: Recv ZSGSRD 30258
17-03-18 02:07:24.626 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:24.626 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:24.626 -07 000000561 INF: FPGA: Recv ZSGSRD 30266
17-03-18 02:07:24.636 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:24.636 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:24.636 -07 000000606 INF: FPGA: Recv ZSGSRD 30256
17-03-18 02:07:24.646 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:24.646 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:24.646 -07 000000444 INF: FPGA: Recv ZSGSRD 30264
17-03-18 02:07:24.656 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:24.656 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:24.656 -07 000000629 INF: FPGA: Recv ZSGSRD 30263
17-03-18 02:07:24.666 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:24.666 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:24.666 -07 000000576 INF: FPGA: Recv ZSGSRD 30256
17-03-18 02:07:24.676 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:24.676 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:24.676 -07 000000629 INF: FPGA: Recv ZSGSRD 30257
17-03-18 02:07:24.686 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:24.686 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:24.686 -07 000000611 INF: FPGA: Recv ZSGSRD 30262
17-03-18 02:07:24.696 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:24.696 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:07:24.696 -07 000000561 INF: FPGA: Recv ZPIEZORD 26129
17-03-18 02:07:24.706 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:24.706 -07 000000591 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.491 V. Piezo Error = -9.1 V.
17-03-18 02:07:24.706 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30259 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30258 (-133.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30254 (-133.9 uncal um), Max = 30266 (-134.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:07:24.706 -07 000000591 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30259, posNoise = 7, negNoise = 5
17-03-18 02:07:24.706 -07 000000591 INF: Z Motor: After move to -0.134717, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:07:24.706 -07 000000591 INF: Z Motor: Settle wait time = 1447 ms, measure time = 105 ms (allowed 150 ms), total time = 1552 ms
17-03-18 02:07:24.706 -07 000000591 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 02:07:24.756 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-18 02:07:24.756 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:07:24.756 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:07:24.756 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:07:24.756 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:07:24.756 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:07:24.756 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:07:24.756 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:07:24.756 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:07:24.756 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:07:24.766 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:07:24.766 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:07:24.766 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:07:24.766 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:07:24.776 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:07:24.816 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:07:25.116 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:07:25.116 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:07:25.116 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:07:25.116 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:07:25.156 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:07:25.156 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 02:07:25.156 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:07:25.236 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 02:07:25.236 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:25.236 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:07:25.236 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 02:07:25.256 -07 000000611 INF: Autofocus start
17-03-18 02:07:25.256 -07 000000611 INF: MeasureProfile start
17-03-18 02:07:25.256 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:07:25.256 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:07:25.266 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:07:25.266 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:07:25.266 -07 000000611 INF: MeasureProfile done
17-03-18 02:07:25.266 -07 000000611 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:07:25.266 -07 000000611 INF: Autofocus finished
17-03-18 02:07:25.466 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:07:25.466 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:07:25.466 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00927734375, Z-position -0.13471358720868. ----------
17-03-18 02:07:25.466 -07 000000610 INF: Cycle	95	Tile	18	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:07:25.476 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27937, sync = True, waitForSettling = True)
17-03-18 02:07:25.476 -07 000000610 INF: Z Motor: Moving to -0.127887 mm, started at -0.134714 mm, distance = 6.83 um
17-03-18 02:07:25.476 -07 000000610 INF: FPGA: Xmit ZDACW 27937\n [Z Motor]
17-03-18 02:07:25.476 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:07:25.486 -07 000000610 INF: FPGA: 'ZDACW 27937' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:07:25.486 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:07:25.486 -07 000000629 INF: FPGA: Recv ZDACR 27937
17-03-18 02:07:25.496 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:25.496 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:07:25.646 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:25.646 -07 000000561 INF: FPGA: Recv ZSGSRD 29197
17-03-18 02:07:25.656 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:07:25.656 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:25.656 -07 000000462 INF: FPGA: Recv ZSGSRD 29201
17-03-18 02:07:25.666 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:25.666 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:25.666 -07 000000576 INF: FPGA: Recv ZSGSRD 29197
17-03-18 02:07:25.676 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:25.676 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:25.676 -07 000000430 INF: FPGA: Recv ZSGSRD 29200
17-03-18 02:07:25.686 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:25.686 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:25.686 -07 000000576 INF: FPGA: Recv ZSGSRD 29196
17-03-18 02:07:25.696 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:25.696 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:25.696 -07 000000430 INF: FPGA: Recv ZSGSRD 29202
17-03-18 02:07:25.706 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:25.706 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:25.706 -07 000000462 INF: FPGA: Recv ZSGSRD 29196
17-03-18 02:07:25.716 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:25.716 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:25.716 -07 000000430 INF: FPGA: Recv ZSGSRD 29197
17-03-18 02:07:25.726 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:25.726 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:25.726 -07 000000576 INF: FPGA: Recv ZSGSRD 29198
17-03-18 02:07:25.736 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:25.736 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:25.736 -07 000000430 INF: FPGA: Recv ZSGSRD 29192
17-03-18 02:07:25.746 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:25.746 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:07:25.746 -07 000000606 INF: FPGA: Recv ZPIEZORD 24722
17-03-18 02:07:25.756 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:25.756 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.263 V. Piezo Error = -9.8 V.
17-03-18 02:07:25.756 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29198 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29197 (-127.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29192 (-127.1 uncal um), Max = 29202 (-127.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:07:25.756 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29198, posNoise = 4, negNoise = 6
17-03-18 02:07:25.756 -07 000000610 INF: Z Motor: After move to -0.127887, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:07:25.756 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:07:25.756 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:07:25.756 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:07:25.756 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:07:25.756 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:07:25.756 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:07:25.756 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:07:25.756 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:07:25.756 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:07:25.756 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:07:25.756 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:07:25.766 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:07:25.766 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:07:25.766 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:07:25.766 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:07:25.766 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:07:25.766 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:07:25.776 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:07:25.776 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:07:25.776 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:07:25.776 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:07:25.776 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28113 150\n [Camera]
17-03-18 02:07:25.976 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:07:26.366 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:07:26.366 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:07:26.376 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:07:26.376 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:07:26.376 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:07:26.376 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:07:26.376 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:07:26.376 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-18 02:07:26.376 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:07:26.376 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:07:26.466 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:07:26.466 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 94. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:07:26.566 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28113 778
17-03-18 02:07:26.716 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:07:26.776 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:07:26.776 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:07:26.776 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:26.776 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 02:07:26.776 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:07:26.776 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:26.776 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:07:26.776 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:07:26.776 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:07:26.786 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 02:07:26.906 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:07:26.906 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:07:26.906 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:07:26.906 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:07:26.906 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:07:26.906 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:07:26.906 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:07:26.906 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:07:26.906 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:07:26.906 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:07:27.096 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:07:27.096 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:07:27.096 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28113 150' command took 2 ms to send, 1313 ms to get response, and 1317 ms overall
17-03-18 02:07:27.096 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:07:27.096 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00927734375, Z-Position -0.127897498126271. ------
17-03-18 02:07:27.096 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:07:27.106 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13372 mm
17-03-18 02:07:27.106 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:07:27.106 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:07:27.106 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 02:07:27.106 -07 000000606 INF: Y Motor: Moving to 74.8526 mm, started at 74.0093 mm, delta = 0.8433 mm
17-03-18 02:07:27.106 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29212, sync = True, waitForSettling = False)
17-03-18 02:07:27.106 -07 000000462 INF: Z Motor: Moving to -0.133724 mm, started at -0.127897 mm, distance = -5.83 um
17-03-18 02:07:27.116 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:07:27.116 -07 000000462 INF: FPGA: Xmit ZDACW 29212\n [Z Motor]
17-03-18 02:07:27.116 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:07:27.126 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:07:27.126 -07 000000462 INF: FPGA: 'ZDACW 29212' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:07:27.126 -07 000000424 INF: FPGA: Recv YRDPOS 151571
17-03-18 02:07:27.136 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:07:27.136 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:07:27.136 -07 000000606 INF: Y Motor: Encoder = 151571 = motor step 118414.8 = 74.0093 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:07:27.136 -07 000000606 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:07:27.136 -07 000000606 INF: Y Motor: Moving 1349 steps-28
17-03-18 02:07:27.146 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:07:27.146 -07 000000512 INF: FPGA: Recv ZDACR 29212
17-03-18 02:07:27.156 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:07:27.156 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:07:27.156 -07 000000462 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 02:07:27.306 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:07:27.306 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:07:27.306 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:27.306 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:07:27.306 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:07:27.306 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:27.306 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:07:27.316 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 02:07:27.316 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:07:27.316 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:07:27.336 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:07:27.336 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:07:27.526 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 02:07:27.526 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:07:27.556 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:07:27.556 -07 000000502 INF: FPGA: Recv YRDPOS 153257
17-03-18 02:07:27.566 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:07:27.566 -07 000000606 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:07:27.566 -07 000000606 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-18 02:07:27.566 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.843 mm, average velocity = 2.114 mm/sec
17-03-18 02:07:28.516 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:07:28.516 -07 000000455 INF: FPGA: Recv YRDPOS 153258
17-03-18 02:07:28.526 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:28.526 -07 000000606 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:07:28.536 -07 000000606 INF: Y Motor: After move to 74.852608, error = -0.019600, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:07:28.536 -07 000000606 INF: Y Motor: Position error after settling (table move) = -40 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:07:28.536 -07 000000606 INF: Y Motor: Moved to 74.8330 after 1433 ms (table move)
17-03-18 02:07:28.546 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133724 mm (DAC = 29212)
17-03-18 02:07:28.546 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:28.546 -07 000000590 INF: FPGA: Recv ZSGSRD 30102
17-03-18 02:07:28.556 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:07:28.556 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:28.556 -07 000000430 INF: FPGA: Recv ZSGSRD 30113
17-03-18 02:07:28.566 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:28.566 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:28.566 -07 000000569 INF: FPGA: Recv ZSGSRD 30102
17-03-18 02:07:28.576 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:28.576 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:28.576 -07 000000512 INF: FPGA: Recv ZSGSRD 30097
17-03-18 02:07:28.586 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:28.586 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:28.586 -07 000000590 INF: FPGA: Recv ZSGSRD 30104
17-03-18 02:07:28.596 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:28.596 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:28.596 -07 000000462 INF: FPGA: Recv ZSGSRD 30107
17-03-18 02:07:28.606 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:28.606 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:28.606 -07 000000569 INF: FPGA: Recv ZSGSRD 30111
17-03-18 02:07:28.616 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:28.616 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:28.616 -07 000000467 INF: FPGA: Recv ZSGSRD 30102
17-03-18 02:07:28.626 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:28.626 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:28.626 -07 000000424 INF: FPGA: Recv ZSGSRD 30106
17-03-18 02:07:28.636 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:28.636 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:28.636 -07 000000462 INF: FPGA: Recv ZSGSRD 30103
17-03-18 02:07:28.646 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:28.646 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:07:28.646 -07 000000561 INF: FPGA: Recv ZPIEZORD 25973
17-03-18 02:07:28.656 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:28.656 -07 000000611 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.457 V. Piezo Error = -9.1 V.
17-03-18 02:07:28.656 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.7 um, Read 10 ADC samples: Avg = 30105 (-132.9 uncal um), Error = 0.8 uncal um, Median = 30104 (-132.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30097 (-132.9 uncal um), Max = 30113 (-133.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:07:28.656 -07 000000611 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30105, posNoise = 8, negNoise = 8
17-03-18 02:07:28.656 -07 000000611 INF: Z Motor: After move to -0.133724, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:07:28.656 -07 000000611 INF: Z Motor: Settle wait time = 1436 ms, measure time = 110 ms (allowed 150 ms), total time = 1546 ms
17-03-18 02:07:28.656 -07 000000611 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:07:28.696 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-18 02:07:28.696 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:07:28.696 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:07:28.696 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:07:28.696 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:07:28.696 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:07:28.696 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:07:28.696 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:07:28.696 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:07:28.696 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:07:28.706 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:07:28.706 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:07:28.716 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:07:28.716 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 02:07:28.716 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:07:28.766 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:07:29.066 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:07:29.066 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:07:29.066 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:07:29.066 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 02:07:29.106 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:07:29.106 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 02:07:29.106 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 02:07:29.196 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:07:29.196 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:29.196 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:07:29.196 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:07:29.206 -07 000000590 INF: Autofocus start
17-03-18 02:07:29.206 -07 000000590 INF: MeasureProfile start
17-03-18 02:07:29.206 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:07:29.206 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:07:29.216 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:07:29.216 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:07:29.216 -07 000000590 INF: MeasureProfile done
17-03-18 02:07:29.216 -07 000000590 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:07:29.216 -07 000000590 INF: Autofocus finished
17-03-18 02:07:29.416 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:07:29.416 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 02:07:29.416 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8330078125, Z-position -0.133724258538849. ----------
17-03-18 02:07:29.416 -07 000000610 INF: Cycle	95	Tile	19	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:07:29.426 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27707, sync = True, waitForSettling = True)
17-03-18 02:07:29.426 -07 000000610 INF: Z Motor: Moving to -0.126835 mm, started at -0.133724 mm, distance = 6.89 um
17-03-18 02:07:29.426 -07 000000610 INF: FPGA: Xmit ZDACW 27707\n [Z Motor]
17-03-18 02:07:29.426 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:07:29.436 -07 000000610 INF: FPGA: 'ZDACW 27707' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:07:29.436 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:07:29.436 -07 000000591 INF: FPGA: Recv ZDACR 27707
17-03-18 02:07:29.446 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:29.446 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:07:29.516 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 3.997626,
17-03-18 02:07:29.596 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:29.596 -07 000000629 INF: FPGA: Recv ZSGSRD 29027
17-03-18 02:07:29.606 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:07:29.606 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:29.606 -07 000000424 INF: FPGA: Recv ZSGSRD 29028
17-03-18 02:07:29.616 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:29.616 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:29.616 -07 000000455 INF: FPGA: Recv ZSGSRD 29029
17-03-18 02:07:29.626 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:29.626 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:29.626 -07 000000591 INF: FPGA: Recv ZSGSRD 29034
17-03-18 02:07:29.636 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:29.636 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:29.636 -07 000000611 INF: FPGA: Recv ZSGSRD 29037
17-03-18 02:07:29.646 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:29.646 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:29.646 -07 000000569 INF: FPGA: Recv ZSGSRD 29023
17-03-18 02:07:29.656 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:29.656 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:29.656 -07 000000606 INF: FPGA: Recv ZSGSRD 29032
17-03-18 02:07:29.666 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:29.666 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:29.666 -07 000000424 INF: FPGA: Recv ZSGSRD 29041
17-03-18 02:07:29.676 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:29.676 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:29.676 -07 000000561 INF: FPGA: Recv ZSGSRD 29023
17-03-18 02:07:29.686 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:29.686 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:07:29.686 -07 000000629 INF: FPGA: Recv ZSGSRD 29031
17-03-18 02:07:29.696 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:29.696 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:07:29.696 -07 000000611 INF: FPGA: Recv ZPIEZORD 24593
17-03-18 02:07:29.706 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:29.706 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.228 V. Piezo Error = -9.7 V.
17-03-18 02:07:29.706 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.8 um, Read 10 ADC samples: Avg = 29030 (-126.0 uncal um), Error = 0.8 uncal um, Median = 29030 (-126.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29023 (-126.0 uncal um), Max = 29041 (-126.1 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:07:29.706 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29030, posNoise = 11, negNoise = 7
17-03-18 02:07:29.706 -07 000000610 INF: Z Motor: After move to -0.126835, error = 0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:07:29.706 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:07:29.706 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:07:29.706 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:07:29.706 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:07:29.706 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:07:29.706 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:07:29.706 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:07:29.706 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:07:29.706 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:07:29.706 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 02:07:29.706 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:07:29.706 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:07:29.706 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:07:29.716 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:07:29.716 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:07:29.716 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:07:29.716 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:07:29.716 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:07:29.716 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:07:29.726 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:07:29.726 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:07:29.726 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 27884 150\n [Camera]
17-03-18 02:07:29.926 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:07:30.316 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:07:30.316 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:07:30.316 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:07:30.316 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:07:30.316 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:07:30.326 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:07:30.326 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:07:30.326 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:07:30.326 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:07:30.326 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:07:30.506 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27884 778
17-03-18 02:07:30.656 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:07:30.706 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 02:07:30.706 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:07:30.706 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:30.706 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 02:07:30.706 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 02:07:30.706 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:30.706 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:07:30.706 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:07:30.706 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:07:30.716 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:07:30.846 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:07:30.846 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:07:30.846 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:07:30.846 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:07:30.846 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:07:30.856 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:07:30.856 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:07:30.856 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:07:30.856 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:07:30.856 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:07:31.036 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:07:31.036 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:07:31.036 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 27884 150' command took 2 ms to send, 1309 ms to get response, and 1316 ms overall
17-03-18 02:07:31.236 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 02:07:31.236 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:07:31.236 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:31.236 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 02:07:31.236 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:07:31.236 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:07:31.246 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:07:31.246 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:07:31.246 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:07:31.246 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 02:07:31.246 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:07:31.286 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 02:07:31.286 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 02:07:31.336 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 02:07:31.466 -07 000000610 INF: Enabling Skipping AutoFocus in the next 2 cycles.
17-03-18 02:07:31.466 -07 000000610 INF: Imaging Cycle 95: ScanTilesCommand Cycle 95 time end. Duration was 162279 ms.
17-03-18 02:07:31.466 -07 000000610 INF: =================== Cycle #95 ===================
17-03-18 02:07:31.466 -07 000000610 INF: ===================  ===================
17-03-18 02:07:31.466 -07 000000576 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 02:07:31.466 -07 000000462 INF: FPGA: Recv EXLED1ADCR 26
17-03-18 02:07:31.476 -07 000000576 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:07:31.476 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:07:31.476 -07 000000576 INF: GreenLED: Using Green data: Photodiode ADC 26 --> 0.0 mW (old method), or 1.9 mW (new method). Difference = 1.9 mW
17-03-18 02:07:31.476 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:07:31.476 -07 000000576 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 95, FrontChillerTemperature: 3.997626, FrontChillerHeatSinkTemperature: 0.425983, AmbientTemperature: 18.74474, FlowCellCompartmentTemperature: 22.00417, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.48613, GreenLEDSensorTemperature: 27.14169, PhotodiodePowerAdcGreen: 26, PhotodiodePowerMwGreen: 1.927049
17-03-18 02:07:31.546 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.