17-03-18 02:07:31.596 -07 000000610 INF: =================== Cycle #96 ===================
17-03-18 02:07:31.606 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 02:07:31.606 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8330 mm, delta = 0.5476 mm
17-03-18 02:07:31.606 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:07:31.606 -07 000000462 INF: FPGA: Recv YRDPOS 153258
17-03-18 02:07:31.616 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:31.616 -07 000000610 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:07:31.616 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 02:07:31.616 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 02:07:31.616 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 02:07:31.726 -07 000000629 INF: FPGA: Recv YMVTO 154377 870
17-03-18 02:07:31.726 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 108 ms to get response, and 117 ms overall
17-03-18 02:07:31.726 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-18 02:07:31.726 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 876 steps, but required 870 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-18 02:07:31.726 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 117 ms, distance = 0.548 mm, average velocity = 4.680 mm/sec
17-03-18 02:07:34.725 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:07:34.725 -07 000000455 INF: FPGA: Recv YRDPOS 154379
17-03-18 02:07:34.735 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:07:34.735 -07 000000610 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:07:34.745 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000209, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:07:34.745 -07 000000610 INF: Y Motor: Position error after settling = 0 encoder counts (0.000 mm), Delta during settling = 2 counts (0.001 mm)
17-03-18 02:07:34.745 -07 000000610 INF: Y Motor: Moved to 75.3804 after 3147 ms
17-03-18 02:07:34.755 -07 000000610 INF: =================== Cycle #96, Flow Cell Temp 60° ===================
17-03-18 02:07:34.755 -07 000000610 INF: =================== Cycle #96, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 02:07:34.755 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 02:07:34.755 -07 000000576 INF: FPGA: Recv TEC2TEMP 
17-03-18 02:07:34.765 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:07:34.765 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:07:34.765 -07 000000576 INF: FPGA: Recv TEC2EN 
17-03-18 02:07:34.775 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:07:34.775 -07 000000610 INF: =================== Cycle #96, Flow Cell Temp 60° ===================
17-03-18 02:07:34.775 -07 000000610 INF: =================== Cycle #96 ===================
17-03-18 02:07:34.775 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:07:34.775 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:07:34.805 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 02:07:34.805 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 02:07:34.805 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:07:34.875 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 4.012614,
17-03-18 02:07:35.105 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:07:35.125 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 02:07:35.125 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 02:07:35.175 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:07:35.195 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:07:35.195 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:07:35.295 -07 000000610 INF: =================== Cycle #96, Pumping Reagent PR2 (3) ===================
17-03-18 02:07:35.295 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 02:07:35.295 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:07:35.325 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:07:35.325 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:07:35.325 -07 000000610 INF: =================== Cycle #96, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:07:35.455 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 02:07:35.495 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:07:36.465 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:07:36.465 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1449, R2=1506, Total=2955. Warn if over 250 bubbles per interval.
17-03-18 02:07:38.625 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:07:38.655 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:07:39.075 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:07:39.105 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:07:39.525 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:07:39.555 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:07:39.555 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 02:07:39.555 -07 000000610 INF: =================== Cycle #96, Pumping Reagent PR2 (3) ===================
17-03-18 02:07:39.685 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:07:39.715 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:07:39.715 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:07:39.845 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:07:39.875 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:07:39.875 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:07:39.875 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:07:40.005 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:07:40.035 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:07:40.235 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 4.004458,
17-03-18 02:07:40.465 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:07:40.495 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:07:40.495 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:07:40.495 -07 000000610 INF: =================== Cycle #96 ===================
17-03-18 02:07:41.465 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 7 R1 7
17-03-18 02:07:41.465 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=7, R2=7, Total=14. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1456, R2=1513, Total=2969. Warn if over 250 bubbles per interval.
17-03-18 02:07:41.715 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:07:41.715 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 02:07:41.715 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:07:41.735 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:07:41.735 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 02:07:41.735 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 02:07:41.875 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:07:41.895 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 02:07:41.895 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 02:07:41.945 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:07:41.965 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 02:07:41.965 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:07:42.065 -07 000000610 INF: =================== Cycle #96, Pumping Reagent CMS (4) ===================
17-03-18 02:07:42.065 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:07:42.065 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:07:42.105 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:07:42.105 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:07:42.105 -07 000000610 INF: =================== Cycle #96, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 02:07:42.235 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:07:42.275 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:07:43.715 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:07:43.745 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:07:44.165 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:07:44.195 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:07:44.195 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 02:07:44.195 -07 000000610 INF: =================== Cycle #96, Pumping Reagent CMS (4) ===================
17-03-18 02:07:44.325 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:07:44.355 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:07:44.355 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:07:44.485 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:07:44.515 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:07:44.515 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:07:44.515 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:07:44.645 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:07:44.675 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:07:45.104 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:07:45.134 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:07:45.134 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:07:45.134 -07 000000610 INF: =================== Cycle #96 ===================
17-03-18 02:07:45.594 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 4.012614,
17-03-18 02:07:46.354 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:07:46.354 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:07:46.354 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:07:46.374 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 02:07:46.374 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 02:07:46.374 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 02:07:46.464 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:07:46.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1456, R2=1513, Total=2969. Warn if over 250 bubbles per interval.
17-03-18 02:07:46.524 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:07:46.544 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 02:07:46.544 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 02:07:46.594 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:07:46.614 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:07:46.614 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:07:46.714 -07 000000610 INF: =================== Cycle #96, Pumping Reagent PR2 (3) ===================
17-03-18 02:07:46.714 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:07:46.714 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:07:46.744 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:07:46.744 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:07:46.744 -07 000000610 INF: =================== Cycle #96, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:07:46.874 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:07:46.914 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:07:47.784 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:07:47.814 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:07:47.814 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 02:07:47.814 -07 000000610 INF: =================== Cycle #96, Pumping Reagent PR2 (3) ===================
17-03-18 02:07:47.944 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:07:47.974 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:07:47.974 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:07:48.104 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:07:48.134 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:07:48.134 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:07:48.134 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:07:48.264 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:07:48.294 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:07:48.724 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:07:48.754 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:07:48.754 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:07:48.754 -07 000000610 INF: =================== Cycle #96 ===================
17-03-18 02:07:48.754 -07 000000576 INF: WaitCommand(10000) start
17-03-18 02:07:48.754 -07 000000579 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:07:48.754 -07 000000579 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:07:49.974 -07 000000579 INF: AsyncDelayTimer waited 1216ms
17-03-18 02:07:49.974 -07 000000579 INF: LanePump: Xmit /1?\r
17-03-18 02:07:50.004 -07 000000579 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:07:50.004 -07 000000579 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:07:50.134 -07 000000579 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:07:50.174 -07 000000579 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:07:50.954 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 3.997626,
17-03-18 02:07:51.464 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:07:51.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1456, R2=1513, Total=2969. Warn if over 250 bubbles per interval.
17-03-18 02:07:51.704 -07 000000579 INF: LanePump: Xmit /1Q\r
17-03-18 02:07:51.734 -07 000000579 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:07:52.154 -07 000000579 INF: LanePump: Xmit /1Q\r
17-03-18 02:07:52.184 -07 000000579 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:07:52.184 -07 000000579 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 02:07:52.184 -07 000000579 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:07:52.184 -07 000000579 INF: ===================  ===================
17-03-18 02:07:56.313 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 3.997626,
17-03-18 02:07:56.463 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:07:56.473 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1456, R2=1513, Total=2969. Warn if over 250 bubbles per interval.
17-03-18 02:07:58.763 -07 000000576 INF: WaitCommand(10000) end
17-03-18 02:07:58.763 -07 000000610 INF: =================== Cycle #96, Pumping Reagent PR2 (3) ===================
17-03-18 02:07:58.763 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 02:07:58.763 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:07:58.803 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:07:58.803 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:07:58.803 -07 000000610 INF: =================== Cycle #96, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:07:58.933 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 02:07:58.973 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:08:01.463 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:08:01.473 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1456, R2=1513, Total=2969. Warn if over 250 bubbles per interval.
17-03-18 02:08:01.673 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 3.997626,
17-03-18 02:08:05.103 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:08:05.133 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:08:05.553 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:08:05.583 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:08:06.003 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:08:06.033 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:08:06.453 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:08:06.473 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 3
17-03-18 02:08:06.473 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=3, R2=4, Total=7. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1459, R2=1517, Total=2976. Warn if over 250 bubbles per interval.
17-03-18 02:08:06.483 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:08:06.903 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:08:06.933 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:08:06.933 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 02:08:06.933 -07 000000610 INF: =================== Cycle #96, Pumping Reagent PR2 (3) ===================
17-03-18 02:08:07.033 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 3.989471,
17-03-18 02:08:07.062 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:08:07.092 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:08:07.092 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:08:07.222 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:08:07.252 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:08:07.252 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:08:07.252 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:08:07.382 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:08:07.412 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:08:07.842 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:08:07.872 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:08:07.872 -07 000000610 INF: LanePump: Waited 461 ms for pump motion to complete
17-03-18 02:08:07.872 -07 000000610 INF: =================== Cycle #96 ===================
17-03-18 02:08:09.092 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 02:08:09.092 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 02:08:09.092 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:08:09.112 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:08:09.112 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 02:08:09.112 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 02:08:09.322 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:08:09.342 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 02:08:09.342 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 02:08:09.392 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:08:09.412 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 02:08:09.412 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:08:09.512 -07 000000610 INF: =================== Cycle #96, Pumping Reagent IMT (1) ===================
17-03-18 02:08:09.512 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:08:09.512 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:08:09.542 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:08:09.542 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:08:09.542 -07 000000610 INF: =================== Cycle #96, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 02:08:09.672 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:08:09.712 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:08:11.152 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:08:11.182 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:08:11.472 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:08:11.472 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1459, R2=1517, Total=2976. Warn if over 250 bubbles per interval.
17-03-18 02:08:11.602 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:08:11.632 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:08:11.632 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 02:08:11.632 -07 000000610 INF: =================== Cycle #96, Pumping Reagent IMT (1) ===================
17-03-18 02:08:11.762 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:08:11.792 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:08:11.792 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:08:11.922 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:08:11.952 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:08:11.952 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:08:11.952 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:08:12.082 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:08:12.112 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:08:12.392 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 3.99219,
17-03-18 02:08:12.542 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:08:12.572 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:08:12.572 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:08:12.572 -07 000000610 INF: =================== Cycle #96 ===================
17-03-18 02:08:13.792 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:08:13.792 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:08:13.792 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:08:13.812 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 02:08:13.812 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 02:08:13.812 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:08:14.042 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:08:14.062 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 02:08:14.062 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 02:08:14.112 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:08:14.132 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:08:14.132 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:08:14.232 -07 000000610 INF: =================== Cycle #96, Pumping Reagent PR2 (3) ===================
17-03-18 02:08:14.232 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:08:14.232 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:08:14.262 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:08:14.262 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:08:14.262 -07 000000610 INF: =================== Cycle #96, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:08:14.392 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:08:14.432 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:08:15.302 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:08:15.332 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:08:15.332 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 02:08:15.332 -07 000000610 INF: =================== Cycle #96, Pumping Reagent PR2 (3) ===================
17-03-18 02:08:15.462 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:08:15.492 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:08:15.492 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:08:15.622 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:08:15.652 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:08:15.652 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:08:15.652 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:08:15.782 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:08:15.812 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:08:16.242 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:08:16.272 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:08:16.272 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:08:16.272 -07 000000610 INF: =================== Cycle #96 ===================
17-03-18 02:08:16.272 -07 000000610 INF: =================== Cycle #96, Flow Cell Temp 65° ===================
17-03-18 02:08:16.272 -07 000000610 INF: =================== Cycle #96, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 02:08:16.272 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 02:08:16.272 -07 000000455 INF: FPGA: Recv TEC2TEMP 
17-03-18 02:08:16.282 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:08:16.282 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:08:16.282 -07 000000576 INF: FPGA: Recv TEC2EN 
17-03-18 02:08:16.292 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:08:16.292 -07 000000610 INF: =================== Cycle #96, Flow Cell Temp 65° ===================
17-03-18 02:08:16.292 -07 000000610 INF: =================== Cycle #96 ===================
17-03-18 02:08:16.292 -07 000000610 INF: WaitCommand(30000) start
17-03-18 02:08:16.472 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:08:16.472 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1459, R2=1517, Total=2976. Warn if over 250 bubbles per interval.
17-03-18 02:08:17.752 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 3.962185,
17-03-18 02:08:21.471 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:08:21.471 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1459, R2=1517, Total=2976. Warn if over 250 bubbles per interval.
17-03-18 02:08:23.111 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 3.988112,
17-03-18 02:08:26.471 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:08:26.471 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1459, R2=1517, Total=2976. Warn if over 250 bubbles per interval.
17-03-18 02:08:28.471 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 4.0344,
17-03-18 02:08:31.470 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:08:31.470 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1459, R2=1517, Total=2976. Warn if over 250 bubbles per interval.
17-03-18 02:08:33.830 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 4.03576,
17-03-18 02:08:36.470 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:08:36.470 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1459, R2=1517, Total=2976. Warn if over 250 bubbles per interval.
17-03-18 02:08:39.190 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 4.016692,
17-03-18 02:08:41.469 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:08:41.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1459, R2=1517, Total=2976. Warn if over 250 bubbles per interval.
17-03-18 02:08:44.549 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 4.011254,
17-03-18 02:08:46.299 -07 000000610 INF: WaitCommand(30000) end
17-03-18 02:08:46.299 -07 000000610 INF: =================== Cycle #96, Pumping Reagent PR2 (3) ===================
17-03-18 02:08:46.299 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 02:08:46.399 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:08:46.429 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:08:46.429 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:08:46.429 -07 000000610 INF: =================== Cycle #96, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:08:46.469 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:08:46.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1459, R2=1517, Total=2976. Warn if over 250 bubbles per interval.
17-03-18 02:08:46.559 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 02:08:46.599 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:08:47.139 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:08:47.169 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:08:47.169 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 02:08:47.169 -07 000000610 INF: =================== Cycle #96, Pumping Reagent PR2 (3) ===================
17-03-18 02:08:47.299 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:08:47.329 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:08:47.329 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:08:47.459 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:08:47.489 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:08:47.489 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:08:47.489 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:08:47.619 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:08:47.649 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:08:48.079 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:08:48.109 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:08:48.109 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:08:48.109 -07 000000610 INF: =================== Cycle #96 ===================
17-03-18 02:08:48.109 -07 000000590 INF: WaitCommand(30000) start
17-03-18 02:08:48.109 -07 000000455 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:08:48.109 -07 000000455 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:08:49.329 -07 000000455 INF: AsyncDelayTimer waited 1216ms
17-03-18 02:08:49.329 -07 000000455 INF: LanePump: Xmit /1?\r
17-03-18 02:08:49.359 -07 000000455 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:08:49.359 -07 000000455 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:08:49.489 -07 000000455 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:08:49.529 -07 000000455 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:08:49.909 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 4.008536,
17-03-18 02:08:51.469 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:08:51.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1459, R2=1517, Total=2976. Warn if over 250 bubbles per interval.
17-03-18 02:08:51.869 -07 000000455 INF: LanePump: Xmit /1Q\r
17-03-18 02:08:51.899 -07 000000455 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:08:52.319 -07 000000455 INF: LanePump: Xmit /1Q\r
17-03-18 02:08:52.349 -07 000000455 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:08:52.349 -07 000000455 INF: LanePump: Waited 2821 ms for pump motion to complete
17-03-18 02:08:52.349 -07 000000455 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:08:52.349 -07 000000455 INF: ===================  ===================
17-03-18 02:08:55.269 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 4.000345,
17-03-18 02:08:56.469 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:08:56.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1459, R2=1517, Total=2976. Warn if over 250 bubbles per interval.
17-03-18 02:09:00.628 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 3.98264,
17-03-18 02:09:01.468 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:09:01.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1459, R2=1517, Total=2976. Warn if over 250 bubbles per interval.
17-03-18 02:09:05.988 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 3.973092,
17-03-18 02:09:06.468 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:09:06.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1459, R2=1517, Total=2976. Warn if over 250 bubbles per interval.
17-03-18 02:09:11.348 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 3.979922,
17-03-18 02:09:11.468 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:09:11.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1459, R2=1517, Total=2976. Warn if over 250 bubbles per interval.
17-03-18 02:09:16.468 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:09:16.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1459, R2=1517, Total=2976. Warn if over 250 bubbles per interval.
17-03-18 02:09:16.708 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 3.983999,
17-03-18 02:09:18.118 -07 000000590 INF: WaitCommand(30000) end
17-03-18 02:09:18.118 -07 000000610 INF: =================== Cycle #96, Flow Cell Temp 22° ===================
17-03-18 02:09:18.118 -07 000000610 INF: =================== Cycle #96, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 02:09:18.118 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 02:09:18.118 -07 000000502 INF: FPGA: Recv TEC2TEMP 
17-03-18 02:09:18.128 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:09:18.128 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:09:18.128 -07 000000629 INF: FPGA: Recv TEC2EN 
17-03-18 02:09:18.138 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:18.138 -07 000000610 INF: =================== Cycle #96, Flow Cell Temp 22° ===================
17-03-18 02:09:18.138 -07 000000610 INF: =================== Cycle #96 ===================
17-03-18 02:09:18.138 -07 000000610 INF: =================== Cycle #96, Pumping Reagent PR2 (3) ===================
17-03-18 02:09:18.138 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 02:09:18.138 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:09:18.178 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:09:18.178 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:09:18.178 -07 000000610 INF: =================== Cycle #96, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:09:18.308 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 02:09:18.348 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:09:21.468 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 02:09:21.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1460, R2=1518, Total=2978. Warn if over 250 bubbles per interval.
17-03-18 02:09:21.478 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:09:21.508 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:09:21.928 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:09:21.958 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:09:22.068 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 3.985358,
17-03-18 02:09:22.378 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:09:22.408 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:09:22.408 -07 000000610 INF: LanePump: Waited 4058 ms for pump motion to complete
17-03-18 02:09:22.408 -07 000000610 INF: =================== Cycle #96, Pumping Reagent PR2 (3) ===================
17-03-18 02:09:22.538 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:09:22.568 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:09:22.568 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:09:22.698 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:09:22.728 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:09:22.728 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:09:22.728 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:09:22.858 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:09:22.888 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:09:23.318 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:09:23.348 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:09:23.348 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:09:23.348 -07 000000610 INF: =================== Cycle #96 ===================
17-03-18 02:09:24.568 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:09:24.568 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 02:09:24.568 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:09:24.588 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:09:24.588 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 02:09:24.588 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 02:09:24.738 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:09:24.758 -07 000000610 INF: ReagentValve: Recv 00E2\r
17-03-18 02:09:24.758 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 226 steps, expected 204. Error = 22 steps (10.8%)
17-03-18 02:09:24.808 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:09:24.828 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 02:09:24.828 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:09:24.928 -07 000000610 INF: =================== Cycle #96, Pumping Reagent USM (2) ===================
17-03-18 02:09:24.928 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:09:24.928 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:09:24.958 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:09:24.958 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:09:24.958 -07 000000610 INF: =================== Cycle #96, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 02:09:25.088 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:09:25.128 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:09:26.468 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 3
17-03-18 02:09:26.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=3, R2=3, Total=6. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:09:26.568 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:09:26.598 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:09:27.018 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:09:27.048 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:09:27.048 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-18 02:09:27.048 -07 000000610 INF: =================== Cycle #96, Pumping Reagent USM (2) ===================
17-03-18 02:09:27.178 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:09:27.208 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:09:27.208 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:09:27.338 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:09:27.368 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:09:27.368 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:09:27.368 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:09:27.428 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 4.007176,
17-03-18 02:09:27.498 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:09:27.528 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:09:27.958 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:09:27.988 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:09:27.988 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:09:27.988 -07 000000610 INF: =================== Cycle #96 ===================
17-03-18 02:09:29.208 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:09:29.208 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:09:29.208 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:09:29.228 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 02:09:29.228 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 02:09:29.228 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:09:29.378 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:09:29.398 -07 000000610 INF: ReagentValve: Recv 00E2\r
17-03-18 02:09:29.398 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 226 steps, expected 204. Error = 22 steps (10.8%)
17-03-18 02:09:29.448 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:09:29.468 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:09:29.468 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:09:29.568 -07 000000610 INF: =================== Cycle #96, Pumping Reagent PR2 (3) ===================
17-03-18 02:09:29.568 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:09:29.568 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:09:29.598 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:09:29.598 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:09:29.598 -07 000000610 INF: =================== Cycle #96, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:09:29.728 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:09:29.768 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:09:30.637 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:09:30.667 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:09:30.667 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 02:09:30.667 -07 000000610 INF: =================== Cycle #96, Pumping Reagent PR2 (3) ===================
17-03-18 02:09:30.797 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:09:30.827 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:09:30.827 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:09:30.957 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:09:30.987 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:09:30.987 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:09:30.987 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:09:31.117 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:09:31.147 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:09:31.467 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:09:31.467 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:09:31.577 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:09:31.607 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:09:31.607 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:09:31.607 -07 000000610 INF: =================== Cycle #96 ===================
17-03-18 02:09:31.607 -07 000000590 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:09:31.607 -07 000000576 INF: WaitCommand(10000) start
17-03-18 02:09:31.607 -07 000000590 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:09:32.787 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 3.99219,
17-03-18 02:09:32.827 -07 000000590 INF: AsyncDelayTimer waited 1216ms
17-03-18 02:09:32.827 -07 000000590 INF: LanePump: Xmit /1?\r
17-03-18 02:09:32.857 -07 000000590 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:09:32.857 -07 000000590 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:09:32.987 -07 000000590 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:09:33.027 -07 000000590 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:09:34.557 -07 000000590 INF: LanePump: Xmit /1Q\r
17-03-18 02:09:34.587 -07 000000590 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:09:35.007 -07 000000590 INF: LanePump: Xmit /1Q\r
17-03-18 02:09:35.037 -07 000000590 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:09:35.037 -07 000000590 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 02:09:35.037 -07 000000590 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:09:35.037 -07 000000590 INF: ===================  ===================
17-03-18 02:09:36.467 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:09:36.467 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:09:38.147 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 3.985358,
17-03-18 02:09:41.467 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:09:41.467 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:09:41.617 -07 000000576 INF: WaitCommand(10000) end
17-03-18 02:09:41.617 -07 000000610 INF: =================== Cycle #96, Imaging ===================
17-03-18 02:09:41.617 -07 000000610 INF: Imaging Cycle 96: ScanTilesCommand Cycle 96 time start.
17-03-18 02:09:41.617 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 02:09:41.617 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:09:41.647 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:09:41.647 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 02:09:41.647 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 02:09:41.947 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:09:41.967 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 02:09:41.967 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 02:09:42.017 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:09:42.037 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 02:09:42.037 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:09:42.037 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:09:42.037 -07 000000502 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 02:09:42.037 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:09:42.037 -07 000000502 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 02:09:42.047 -07 000000629 INF: FPGA: Recv EXLED1ON 
17-03-18 02:09:42.047 -07 000000502 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-18 02:09:42.047 -07 000000502 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 02:09:42.047 -07 000000579 INF: FPGA: Recv EXLED1ADCR 23095
17-03-18 02:09:42.057 -07 000000502 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:09:42.057 -07 000000502 INF: RedLED: Using Red data: Photodiode ADC 23095 --> 7.4 mW (old method), or 204.7 mW (new method). Difference = 197.3 mW
17-03-18 02:09:42.057 -07 000000502 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 02:09:42.057 -07 000000462 INF: FPGA: Recv EXLED1OFF 
17-03-18 02:09:42.067 -07 000000502 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:42.067 -07 000000502 INF: RedLED: LED was on for 19 ms
17-03-18 02:09:42.067 -07 000000502 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-18 02:09:42.067 -07 000000502 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 02:09:42.067 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:09:42.067 -07 000000502 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 02:09:42.067 -07 000000579 INF: FPGA: Recv EXLED2ON 
17-03-18 02:09:42.077 -07 000000502 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:09:42.077 -07 000000502 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 02:09:42.077 -07 000000579 INF: FPGA: Recv EXLED1ADCR 2102
17-03-18 02:09:42.087 -07 000000502 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:42.087 -07 000000502 INF: GreenLED: Using Green data: Photodiode ADC 2102 --> 0.9 mW (old method), or 182.6 mW (new method). Difference = 181.7 mW
17-03-18 02:09:42.087 -07 000000502 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 02:09:42.087 -07 000000462 INF: FPGA: Recv EXLED2OFF 
17-03-18 02:09:42.097 -07 000000502 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:42.097 -07 000000502 INF: GreenLED: LED was on for 20 ms
17-03-18 02:09:42.097 -07 000000502 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 02:09:42.097 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 02:09:42.097 -07 000000629 INF: FPGA: Recv EMCUR 
17-03-18 02:09:42.107 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:09:42.107 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 02:09:42.607 -07 000000576 INF: FPGA: Recv EMOUT
17-03-18 02:09:42.607 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 02:09:42.607 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 02:09:42.607 -07 000000502 INF: FPGA: Recv EMCUR 
17-03-18 02:09:42.617 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:09:42.617 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:09:42.617 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38037109375, Z-Position -0.126818230486456. ------
17-03-18 02:09:42.617 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:09:42.617 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17909 mm
17-03-18 02:09:42.617 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:09:42.617 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 02:09:42.627 -07 000000579 INF: Y Motor: Moving to 59.9126 mm, started at 75.3804 mm, delta = -15.4678 mm
17-03-18 02:09:42.627 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 39122, sync = True, waitForSettling = False)
17-03-18 02:09:42.627 -07 000000467 INF: Z Motor: Moving to -0.179089 mm, started at -0.126818 mm, distance = -52.27 um
17-03-18 02:09:42.627 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:09:42.627 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 7 ms overall
17-03-18 02:09:42.627 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:09:42.627 -07 000000590 INF: FPGA: Recv YRDPOS 154379
17-03-18 02:09:42.637 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:09:42.637 -07 000000579 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:09:42.637 -07 000000579 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 02:09:42.637 -07 000000579 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 02:09:42.637 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:09:42.647 -07 000000467 INF: FPGA: Xmit ZDACW 39122\n [Z Motor]
17-03-18 02:09:42.647 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:09:42.657 -07 000000467 INF: FPGA: 'ZDACW 39122' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:09:42.657 -07 000000579 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 02:09:42.667 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:09:42.667 -07 000000461 INF: FPGA: Recv ZDACR 39122
17-03-18 02:09:42.677 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:09:42.677 -07 000000467 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 02:09:42.837 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:09:42.837 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 209 ms overall
17-03-18 02:09:43.507 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 4.008536,
17-03-18 02:09:44.337 -07 000000569 INF: FPGA: Recv YMVTO 122703 24776
17-03-18 02:09:44.337 -07 000000579 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1705 ms overall
17-03-18 02:09:44.337 -07 000000579 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 02:09:44.337 -07 000000579 INF: Y Motor: To move from 75.380 to 59.913 (-15.468 mm) should take 24748 steps, but required 24776 steps (15.485 mm). Slippage = 0.018 mm (0.00%).
17-03-18 02:09:44.337 -07 000000579 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1706 ms, distance = 15.468 mm, average velocity = 9.067 mm/sec
17-03-18 02:09:46.467 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:09:46.467 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:09:47.187 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:09:47.187 -07 000000561 INF: FPGA: Recv YRDPOS 122696
17-03-18 02:09:47.197 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:09:47.197 -07 000000579 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:09:47.217 -07 000000579 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:09:47.217 -07 000000579 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 02:09:47.217 -07 000000579 INF: Y Motor: Moved to 59.9102 after 4595 ms
17-03-18 02:09:47.227 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179089 mm (DAC = 39122)
17-03-18 02:09:47.227 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:47.227 -07 000000579 INF: FPGA: Recv ZSGSRD 37173
17-03-18 02:09:47.237 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:09:47.237 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:47.237 -07 000000569 INF: FPGA: Recv ZSGSRD 37168
17-03-18 02:09:47.247 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:47.247 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:47.247 -07 000000569 INF: FPGA: Recv ZSGSRD 37161
17-03-18 02:09:47.257 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:47.257 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:47.257 -07 000000569 INF: FPGA: Recv ZSGSRD 37172
17-03-18 02:09:47.267 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:47.267 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:47.267 -07 000000569 INF: FPGA: Recv ZSGSRD 37171
17-03-18 02:09:47.277 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:47.277 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:47.277 -07 000000590 INF: FPGA: Recv ZSGSRD 37168
17-03-18 02:09:47.287 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:47.287 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:47.287 -07 000000590 INF: FPGA: Recv ZSGSRD 37169
17-03-18 02:09:47.297 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:47.297 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:47.297 -07 000000569 INF: FPGA: Recv ZSGSRD 37164
17-03-18 02:09:47.307 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:47.307 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:47.307 -07 000000569 INF: FPGA: Recv ZSGSRD 37172
17-03-18 02:09:47.317 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:47.317 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:47.317 -07 000000569 INF: FPGA: Recv ZSGSRD 37162
17-03-18 02:09:47.327 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:47.327 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:09:47.327 -07 000000455 INF: FPGA: Recv ZPIEZORD 33480
17-03-18 02:09:47.337 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:47.337 -07 000000462 INF: Z Motor: Piezo is near 51.5 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.970 V. Piezo Error = -8.2 V.
17-03-18 02:09:47.337 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.1 um, Read 10 ADC samples: Avg = 37168 (-178.2 uncal um), Error = 0.9 uncal um, Median = 37168 (-178.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37161 (-178.2 uncal um), Max = 37173 (-178.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:09:47.337 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37168, posNoise = 5, negNoise = 7
17-03-18 02:09:47.337 -07 000000462 INF: Z Motor: After move to -0.179089, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:09:47.337 -07 000000462 INF: Z Motor: Settle wait time = 4598 ms, measure time = 109 ms (allowed 150 ms), total time = 4707 ms
17-03-18 02:09:47.337 -07 000000462 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:09:47.387 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4763 ms
17-03-18 02:09:47.387 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:09:47.387 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:09:47.387 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:09:47.387 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:09:47.387 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:09:47.387 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:09:47.387 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:09:47.387 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:09:47.387 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 02:09:47.417 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 02:09:47.417 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:09:47.417 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 02:09:47.417 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:09:47.437 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:09:47.437 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 02:09:47.437 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:09:47.477 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:09:47.777 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:09:47.777 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:09:47.777 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:09:47.787 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592080920, 0x0, 559484976) start.
17-03-18 02:09:47.817 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:09:47.817 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 02:09:47.817 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 02:09:47.907 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592080920, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:09:47.907 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:09:47.907 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:09:47.907 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:09:48.017 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:09:48.017 -07 000000569 INF: Image SNR check: start
17-03-18 02:09:48.017 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:09:48.027 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:09:48.027 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:09:48.027 -07 000000569 INF: Image SNR check: pass  [peak (Max-Min)=172.11]
17-03-18 02:09:48.027 -07 000000569 INF: Autofocus start
17-03-18 02:09:48.027 -07 000000569 INF: MeasureProfile start
17-03-18 02:09:48.037 -07 000000569 INF: MeasureProfile done
17-03-18 02:09:48.037 -07 000000569 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 02:09:48.037 -07 000000569 INF: Autofocus finished
17-03-18 02:09:48.227 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:09:48.227 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:09:48.227 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.179098468896106. ----------
17-03-18 02:09:48.227 -07 000000610 INF: Cycle	96	Tile	1	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:09:48.237 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37602, sync = True, waitForSettling = True)
17-03-18 02:09:48.237 -07 000000610 INF: Z Motor: Moving to -0.172131 mm, started at -0.179098 mm, distance = 6.97 um
17-03-18 02:09:48.237 -07 000000610 INF: FPGA: Xmit ZDACW 37602\n [Z Motor]
17-03-18 02:09:48.237 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:09:48.247 -07 000000610 INF: FPGA: 'ZDACW 37602' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:48.247 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:09:48.247 -07 000000455 INF: FPGA: Recv ZDACR 37602
17-03-18 02:09:48.257 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:48.257 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:09:48.407 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:48.407 -07 000000455 INF: FPGA: Recv ZSGSRD 36088
17-03-18 02:09:48.417 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:48.437 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:48.437 -07 000000629 INF: FPGA: Recv ZSGSRD 36088
17-03-18 02:09:48.447 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:09:48.447 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:48.447 -07 000000467 INF: FPGA: Recv ZSGSRD 36086
17-03-18 02:09:48.457 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:48.477 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:48.477 -07 000000462 INF: FPGA: Recv ZSGSRD 36093
17-03-18 02:09:48.487 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:09:48.487 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:48.487 -07 000000579 INF: FPGA: Recv ZSGSRD 36088
17-03-18 02:09:48.497 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:48.497 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:48.497 -07 000000590 INF: FPGA: Recv ZSGSRD 36083
17-03-18 02:09:48.507 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:48.507 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:48.507 -07 000000455 INF: FPGA: Recv ZSGSRD 36087
17-03-18 02:09:48.517 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:48.517 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:48.517 -07 000000461 INF: FPGA: Recv ZSGSRD 36084
17-03-18 02:09:48.527 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:48.527 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:48.527 -07 000000590 INF: FPGA: Recv ZSGSRD 36089
17-03-18 02:09:48.537 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:48.537 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:48.537 -07 000000467 INF: FPGA: Recv ZSGSRD 36090
17-03-18 02:09:48.547 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:48.557 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:09:48.557 -07 000000461 INF: FPGA: Recv ZPIEZORD 32046
17-03-18 02:09:48.567 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:09:48.567 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.738 V. Piezo Error = -8.9 V.
17-03-18 02:09:48.567 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36088 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36088 (-171.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36083 (-171.2 uncal um), Max = 36093 (-171.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:09:48.567 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36088, posNoise = 5, negNoise = 5
17-03-18 02:09:48.567 -07 000000610 INF: Z Motor: After move to -0.172131, error = -0.000029, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:09:48.567 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms)
17-03-18 02:09:48.567 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:09:48.567 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:09:48.567 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:09:48.567 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:09:48.567 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:09:48.567 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:09:48.567 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:09:48.567 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:09:48.567 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:09:48.567 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:09:48.567 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:09:48.567 -07 000000579 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 02:09:48.567 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:09:48.567 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:09:48.587 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:09:48.587 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:09:48.587 -07 000000579 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 02:09:48.587 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:09:48.597 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:09:48.597 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:09:48.607 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 02:09:48.607 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-18 02:09:48.607 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37779 150\n [Camera]
17-03-18 02:09:48.807 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:09:48.867 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 4.014009,
17-03-18 02:09:49.207 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:09:49.207 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:09:49.207 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:09:49.207 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:09:49.207 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:09:49.207 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:09:49.207 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:09:49.207 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-18 02:09:49.217 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:09:49.217 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:09:49.397 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37779 778
17-03-18 02:09:49.547 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:09:49.607 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:09:49.607 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:09:49.607 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:09:49.607 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 02:09:49.607 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:09:49.607 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:09:49.617 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:09:49.617 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:09:49.617 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:09:49.617 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:09:49.737 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:09:49.737 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:09:49.737 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:09:49.737 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:09:49.737 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:09:49.857 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:09:49.857 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:09:49.857 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:09:49.867 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:09:49.867 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:09:49.927 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:09:49.927 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:09:49.927 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37779 150' command took 2 ms to send, 1304 ms to get response, and 1317 ms overall
17-03-18 02:09:49.927 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:09:49.927 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.172160319783004. ------
17-03-18 02:09:49.937 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:09:49.937 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17809 mm
17-03-18 02:09:49.937 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:09:49.937 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 02:09:49.937 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38904, sync = True, waitForSettling = False)
17-03-18 02:09:49.937 -07 000000462 INF: Z Motor: Moving to -0.178091 mm, started at -0.172160 mm, distance = -5.93 um
17-03-18 02:09:49.937 -07 000000502 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 02:09:49.937 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:09:49.947 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:09:49.947 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:09:49.957 -07 000000462 INF: FPGA: Xmit ZDACW 38904\n [Z Motor]
17-03-18 02:09:49.957 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:09:49.967 -07 000000462 INF: FPGA: 'ZDACW 38904' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:09:49.967 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:09:49.967 -07 000000629 INF: FPGA: Recv YRDPOS 122696
17-03-18 02:09:49.977 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 35 ms overall
17-03-18 02:09:49.977 -07 000000502 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:09:49.977 -07 000000502 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:09:49.977 -07 000000502 INF: Y Motor: Moving 1332 steps2
17-03-18 02:09:49.977 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:09:49.977 -07 000000590 INF: FPGA: Recv ZDACR 38904
17-03-18 02:09:49.987 -07 000000462 INF: FPGA: 'ZDACR' command took 3 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:09:49.987 -07 000000462 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 02:09:49.987 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:09:50.147 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:09:50.147 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:09:50.257 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:09:50.257 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:09:50.257 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:09:50.257 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 02:09:50.257 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:09:50.257 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:09:50.257 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:09:50.257 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 02:09:50.257 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:09:50.267 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:09:50.357 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 02:09:50.357 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-18 02:09:50.397 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:09:50.397 -07 000000576 INF: FPGA: Recv YRDPOS 124380
17-03-18 02:09:50.407 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:09:50.407 -07 000000502 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:09:50.407 -07 000000502 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 02:09:50.407 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.832 mm, average velocity = 2.145 mm/sec
17-03-18 02:09:51.357 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:09:51.357 -07 000000579 INF: FPGA: Recv YRDPOS 124380
17-03-18 02:09:51.367 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:09:51.367 -07 000000502 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:09:51.387 -07 000000502 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:09:51.387 -07 000000502 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:09:51.387 -07 000000502 INF: Y Motor: Moved to 60.7324 after 1455 ms (table move)
17-03-18 02:09:51.397 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178091 mm (DAC = 38904)
17-03-18 02:09:51.397 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:51.397 -07 000000455 INF: FPGA: Recv ZSGSRD 37015
17-03-18 02:09:51.407 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:09:51.407 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:51.407 -07 000000455 INF: FPGA: Recv ZSGSRD 37011
17-03-18 02:09:51.417 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:51.417 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:51.417 -07 000000455 INF: FPGA: Recv ZSGSRD 37018
17-03-18 02:09:51.427 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:51.427 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:51.427 -07 000000455 INF: FPGA: Recv ZSGSRD 37011
17-03-18 02:09:51.437 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:51.437 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:51.437 -07 000000455 INF: FPGA: Recv ZSGSRD 37016
17-03-18 02:09:51.447 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:51.447 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:51.447 -07 000000455 INF: FPGA: Recv ZSGSRD 37014
17-03-18 02:09:51.457 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:51.457 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:51.457 -07 000000455 INF: FPGA: Recv ZSGSRD 37016
17-03-18 02:09:51.467 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:51.467 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:51.467 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:09:51.467 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:09:51.467 -07 000000590 INF: FPGA: Recv ZSGSRD 37011
17-03-18 02:09:51.477 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:51.477 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:51.477 -07 000000455 INF: FPGA: Recv ZSGSRD 37011
17-03-18 02:09:51.487 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:09:51.487 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:51.487 -07 000000455 INF: FPGA: Recv ZSGSRD 37020
17-03-18 02:09:51.497 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:51.497 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:09:51.497 -07 000000455 INF: FPGA: Recv ZPIEZORD 33214
17-03-18 02:09:51.507 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:51.507 -07 000000626 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.936 V. Piezo Error = -8.4 V.
17-03-18 02:09:51.507 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.1 um, Read 10 ADC samples: Avg = 37014 (-177.2 uncal um), Error = 0.9 uncal um, Median = 37014 (-177.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 37011 (-177.2 uncal um), Max = 37020 (-177.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:09:51.507 -07 000000626 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37014, posNoise = 6, negNoise = 3
17-03-18 02:09:51.507 -07 000000626 INF: Z Motor: After move to -0.178091, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:09:51.507 -07 000000626 INF: Z Motor: Settle wait time = 1458 ms, measure time = 108 ms (allowed 150 ms), total time = 1566 ms
17-03-18 02:09:51.507 -07 000000626 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:09:51.557 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 02:09:51.557 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:09:51.557 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:09:51.557 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:09:51.557 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:09:51.557 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:09:51.557 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:09:51.557 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:09:51.557 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:09:51.557 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:09:51.557 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:09:51.567 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:09:51.577 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:09:51.577 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:09:51.577 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:09:51.627 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:09:51.927 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:09:51.927 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:09:51.927 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:09:51.927 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-18 02:09:51.957 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:09:51.967 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 02:09:51.967 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:09:52.057 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:09:52.057 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:09:52.057 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:09:52.057 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 02:09:52.067 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:09:52.067 -07 000000626 INF: Autofocus start
17-03-18 02:09:52.067 -07 000000626 INF: MeasureProfile start
17-03-18 02:09:52.067 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:09:52.077 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:09:52.077 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:09:52.077 -07 000000626 INF: MeasureProfile done
17-03-18 02:09:52.077 -07 000000626 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:09:52.077 -07 000000626 INF: Autofocus finished
17-03-18 02:09:52.277 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:09:52.277 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 203 ms overall
17-03-18 02:09:52.277 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.178109140226275. ----------
17-03-18 02:09:52.287 -07 000000610 INF: Cycle	96	Tile	2	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:09:52.287 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37419, sync = True, waitForSettling = True)
17-03-18 02:09:52.287 -07 000000610 INF: Z Motor: Moving to -0.171293 mm, started at -0.178109 mm, distance = 6.82 um
17-03-18 02:09:52.287 -07 000000610 INF: FPGA: Xmit ZDACW 37419\n [Z Motor]
17-03-18 02:09:52.287 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:09:52.297 -07 000000610 INF: FPGA: 'ZDACW 37419' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:09:52.297 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:09:52.297 -07 000000561 INF: FPGA: Recv ZDACR 37419
17-03-18 02:09:52.307 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:52.307 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:09:52.457 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:52.457 -07 000000626 INF: FPGA: Recv ZSGSRD 35953
17-03-18 02:09:52.467 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:09:52.467 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:52.467 -07 000000462 INF: FPGA: Recv ZSGSRD 35959
17-03-18 02:09:52.477 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:52.477 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:52.477 -07 000000626 INF: FPGA: Recv ZSGSRD 35955
17-03-18 02:09:52.487 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:52.487 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:52.487 -07 000000462 INF: FPGA: Recv ZSGSRD 35954
17-03-18 02:09:52.497 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:52.497 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:52.497 -07 000000626 INF: FPGA: Recv ZSGSRD 35951
17-03-18 02:09:52.507 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:52.507 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:52.507 -07 000000462 INF: FPGA: Recv ZSGSRD 35960
17-03-18 02:09:52.517 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:52.517 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:52.517 -07 000000561 INF: FPGA: Recv ZSGSRD 35957
17-03-18 02:09:52.527 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:52.527 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:52.527 -07 000000626 INF: FPGA: Recv ZSGSRD 35948
17-03-18 02:09:52.537 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:52.537 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:52.537 -07 000000467 INF: FPGA: Recv ZSGSRD 35953
17-03-18 02:09:52.547 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:52.547 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:52.547 -07 000000569 INF: FPGA: Recv ZSGSRD 35951
17-03-18 02:09:52.557 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:52.557 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:09:52.557 -07 000000461 INF: FPGA: Recv ZPIEZORD 31829
17-03-18 02:09:52.567 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:52.567 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.710 V. Piezo Error = -9.1 V.
17-03-18 02:09:52.567 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.3 um, Read 10 ADC samples: Avg = 35954 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35954 (-170.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35948 (-170.4 uncal um), Max = 35960 (-170.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:09:52.567 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35954, posNoise = 6, negNoise = 6
17-03-18 02:09:52.567 -07 000000610 INF: Z Motor: After move to -0.171293, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:09:52.567 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:09:52.567 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:09:52.567 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:09:52.567 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:09:52.567 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:09:52.567 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:09:52.567 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:09:52.567 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:09:52.567 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:09:52.567 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:09:52.567 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:09:52.567 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:09:52.567 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:09:52.577 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:09:52.577 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:09:52.577 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:09:52.577 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:09:52.587 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:09:52.587 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:09:52.587 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:09:52.587 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:09:52.587 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37596 150\n [Camera]
17-03-18 02:09:52.787 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:09:53.187 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:09:53.187 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:09:53.187 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:09:53.187 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:09:53.187 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:09:53.187 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:09:53.187 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:09:53.187 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:09:53.187 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:09:53.187 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:09:53.377 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37596 778
17-03-18 02:09:53.527 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:09:53.587 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 02:09:53.587 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:09:53.587 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:09:53.587 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 02:09:53.587 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:09:53.587 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:09:53.587 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:09:53.587 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:09:53.587 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:09:53.597 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 02:09:53.717 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:09:53.717 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:09:53.717 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:09:53.717 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:09:53.717 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:09:53.717 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:09:53.717 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:09:53.717 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:09:53.717 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:09:53.827 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:09:53.907 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-18 02:09:53.917 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:09:53.917 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37596 150' command took 2 ms to send, 1310 ms to get response, and 1321 ms overall
17-03-18 02:09:53.917 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:09:53.917 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.171299475356008. ------
17-03-18 02:09:53.917 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:09:53.917 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17799 mm
17-03-18 02:09:53.917 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:09:53.917 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 02:09:53.917 -07 000000626 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 02:09:53.917 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38883, sync = True, waitForSettling = False)
17-03-18 02:09:53.917 -07 000000561 INF: Z Motor: Moving to -0.177995 mm, started at -0.171299 mm, distance = -6.70 um
17-03-18 02:09:53.917 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:09:53.927 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:09:53.927 -07 000000561 INF: FPGA: Xmit ZDACW 38883\n [Z Motor]
17-03-18 02:09:53.927 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:09:53.937 -07 000000561 INF: FPGA: 'ZDACW 38883' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:09:53.937 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:09:53.937 -07 000000629 INF: FPGA: Recv YRDPOS 124380
17-03-18 02:09:53.947 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:09:53.947 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:09:53.947 -07 000000626 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:09:53.947 -07 000000626 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:09:53.947 -07 000000626 INF: Y Motor: Moving 1344 steps-21
17-03-18 02:09:53.957 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:09:53.957 -07 000000569 INF: FPGA: Recv ZDACR 38883
17-03-18 02:09:53.967 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:09:53.967 -07 000000561 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 02:09:53.967 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:09:54.107 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 02:09:54.107 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:09:54.107 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:09:54.117 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:09:54.117 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:09:54.147 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:09:54.147 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 223 ms overall
17-03-18 02:09:54.227 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 4.020806,
17-03-18 02:09:54.227 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:09:54.227 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 508 ms.
17-03-18 02:09:54.227 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:09:54.227 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:09:54.237 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 518 ms.
17-03-18 02:09:54.337 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 02:09:54.337 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:09:54.387 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:09:54.387 -07 000000502 INF: FPGA: Recv YRDPOS 126081
17-03-18 02:09:54.397 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:09:54.397 -07 000000626 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:09:54.397 -07 000000626 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 02:09:54.397 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.111 mm/sec
17-03-18 02:09:55.347 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:09:55.347 -07 000000424 INF: FPGA: Recv YRDPOS 126081
17-03-18 02:09:55.357 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:09:55.357 -07 000000626 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:09:55.377 -07 000000626 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:09:55.377 -07 000000626 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:09:55.377 -07 000000626 INF: Y Motor: Moved to 61.5630 after 1459 ms (table move)
17-03-18 02:09:55.387 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177995 mm (DAC = 38883)
17-03-18 02:09:55.387 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:55.387 -07 000000502 INF: FPGA: Recv ZSGSRD 37000
17-03-18 02:09:55.397 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:55.397 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:55.397 -07 000000424 INF: FPGA: Recv ZSGSRD 36998
17-03-18 02:09:55.407 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:55.407 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:55.407 -07 000000444 INF: FPGA: Recv ZSGSRD 36996
17-03-18 02:09:55.417 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:55.417 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:55.417 -07 000000579 INF: FPGA: Recv ZSGSRD 37008
17-03-18 02:09:55.427 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:55.427 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:55.427 -07 000000591 INF: FPGA: Recv ZSGSRD 37005
17-03-18 02:09:55.437 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:55.437 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:55.437 -07 000000569 INF: FPGA: Recv ZSGSRD 36997
17-03-18 02:09:55.447 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:55.447 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:55.447 -07 000000590 INF: FPGA: Recv ZSGSRD 37000
17-03-18 02:09:55.457 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:55.457 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:55.457 -07 000000579 INF: FPGA: Recv ZSGSRD 36990
17-03-18 02:09:55.467 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:55.467 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:55.467 -07 000000626 INF: FPGA: Recv ZSGSRD 36997
17-03-18 02:09:55.477 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:55.477 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:55.477 -07 000000629 INF: FPGA: Recv ZSGSRD 36998
17-03-18 02:09:55.487 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:55.487 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:09:55.487 -07 000000591 INF: FPGA: Recv ZPIEZORD 33243
17-03-18 02:09:55.497 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:55.497 -07 000000461 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.933 V. Piezo Error = -8.3 V.
17-03-18 02:09:55.497 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.0 um, Read 10 ADC samples: Avg = 36999 (-177.1 uncal um), Error = 0.9 uncal um, Median = 36998 (-177.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36990 (-177.1 uncal um), Max = 37008 (-177.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:09:55.497 -07 000000461 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36999, posNoise = 9, negNoise = 9
17-03-18 02:09:55.497 -07 000000461 INF: Z Motor: After move to -0.177995, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:09:55.497 -07 000000461 INF: Z Motor: Settle wait time = 1462 ms, measure time = 110 ms (allowed 150 ms), total time = 1572 ms
17-03-18 02:09:55.497 -07 000000461 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:09:55.537 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 02:09:55.537 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:09:55.547 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:09:55.547 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:09:55.557 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:09:55.557 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:09:55.557 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:09:55.557 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:09:55.557 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:09:55.557 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:09:55.567 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 5 ms.
17-03-18 02:09:55.567 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:09:55.577 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:09:55.577 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 02:09:55.587 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:09:55.627 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:09:55.927 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:09:55.927 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:09:55.927 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:09:55.927 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:09:55.967 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:09:55.967 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 02:09:55.967 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 02:09:56.047 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:09:56.047 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:09:56.047 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:09:56.047 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 02:09:56.067 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:09:56.067 -07 000000576 INF: Autofocus start
17-03-18 02:09:56.067 -07 000000576 INF: MeasureProfile start
17-03-18 02:09:56.067 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:09:56.077 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:09:56.077 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:09:56.077 -07 000000576 INF: MeasureProfile done
17-03-18 02:09:56.077 -07 000000576 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:09:56.077 -07 000000576 INF: Autofocus finished
17-03-18 02:09:56.277 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:09:56.277 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 02:09:56.277 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.178012777044149. ----------
17-03-18 02:09:56.277 -07 000000610 INF: Cycle	96	Tile	3	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:09:56.287 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37415, sync = True, waitForSettling = True)
17-03-18 02:09:56.287 -07 000000610 INF: Z Motor: Moving to -0.171275 mm, started at -0.178013 mm, distance = 6.74 um
17-03-18 02:09:56.287 -07 000000610 INF: FPGA: Xmit ZDACW 37415\n [Z Motor]
17-03-18 02:09:56.287 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:09:56.297 -07 000000610 INF: FPGA: 'ZDACW 37415' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:56.297 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:09:56.297 -07 000000462 INF: FPGA: Recv ZDACR 37415
17-03-18 02:09:56.307 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:56.307 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:09:56.457 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:56.457 -07 000000606 INF: FPGA: Recv ZSGSRD 35944
17-03-18 02:09:56.467 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:09:56.467 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:56.467 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:09:56.467 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:09:56.467 -07 000000591 INF: FPGA: Recv ZSGSRD 35954
17-03-18 02:09:56.477 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:56.477 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:56.477 -07 000000569 INF: FPGA: Recv ZSGSRD 35954
17-03-18 02:09:56.487 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:56.487 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:56.487 -07 000000576 INF: FPGA: Recv ZSGSRD 35950
17-03-18 02:09:56.497 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:56.497 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:56.497 -07 000000579 INF: FPGA: Recv ZSGSRD 35952
17-03-18 02:09:56.507 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:56.507 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:56.507 -07 000000561 INF: FPGA: Recv ZSGSRD 35952
17-03-18 02:09:56.517 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:56.517 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:56.517 -07 000000629 INF: FPGA: Recv ZSGSRD 35948
17-03-18 02:09:56.527 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:56.527 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:56.527 -07 000000569 INF: FPGA: Recv ZSGSRD 35951
17-03-18 02:09:56.537 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:56.537 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:56.537 -07 000000430 INF: FPGA: Recv ZSGSRD 35948
17-03-18 02:09:56.547 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:56.547 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:56.547 -07 000000576 INF: FPGA: Recv ZSGSRD 35949
17-03-18 02:09:56.557 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:56.557 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:09:56.557 -07 000000579 INF: FPGA: Recv ZPIEZORD 31842
17-03-18 02:09:56.567 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:56.567 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.709 V. Piezo Error = -9.1 V.
17-03-18 02:09:56.567 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.3 um, Read 10 ADC samples: Avg = 35950 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35950 (-170.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35944 (-170.4 uncal um), Max = 35954 (-170.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:09:56.567 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35950, posNoise = 4, negNoise = 6
17-03-18 02:09:56.567 -07 000000610 INF: Z Motor: After move to -0.171275, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:09:56.567 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:09:56.567 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:09:56.567 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:09:56.567 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:09:56.567 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:09:56.567 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:09:56.567 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:09:56.567 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:09:56.567 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:09:56.567 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:09:56.567 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:09:56.567 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:09:56.567 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:09:56.577 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:09:56.577 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:09:56.577 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:09:56.577 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:09:56.587 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:09:56.587 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:09:56.587 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:09:56.587 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:09:56.587 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37592 150\n [Camera]
17-03-18 02:09:56.787 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:09:57.177 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:09:57.177 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:09:57.177 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:09:57.187 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:09:57.187 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:09:57.187 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:09:57.187 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:09:57.187 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:09:57.187 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:09:57.187 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:09:57.377 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37592 778
17-03-18 02:09:57.527 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:09:57.567 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 02:09:57.567 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 02:09:57.567 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:09:57.567 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 02:09:57.567 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 02:09:57.567 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:09:57.567 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:09:57.567 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:09:57.567 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:09:57.577 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:09:57.717 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:09:57.717 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:09:57.717 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:09:57.717 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:09:57.717 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:09:57.717 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:09:57.717 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:09:57.717 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 02:09:57.727 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:09:57.727 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:09:57.907 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:09:57.907 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:09:57.907 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37592 150' command took 2 ms to send, 1312 ms to get response, and 1316 ms overall
17-03-18 02:09:57.907 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:09:57.907 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.171273778507441. ------
17-03-18 02:09:57.917 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:09:57.917 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17756 mm
17-03-18 02:09:57.917 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:09:57.917 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:09:57.917 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 02:09:57.917 -07 000000569 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 02:09:57.917 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38788, sync = True, waitForSettling = False)
17-03-18 02:09:57.917 -07 000000424 INF: Z Motor: Moving to -0.177560 mm, started at -0.171274 mm, distance = -6.29 um
17-03-18 02:09:57.927 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:57.927 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:09:57.927 -07 000000579 INF: FPGA: Recv YRDPOS 126082
17-03-18 02:09:57.937 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:09:57.937 -07 000000569 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:09:57.937 -07 000000424 INF: FPGA: Xmit ZDACW 38788\n [Z Motor]
17-03-18 02:09:57.937 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:09:57.937 -07 000000569 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:09:57.937 -07 000000569 INF: Y Motor: Moving 1343 steps-20
17-03-18 02:09:57.947 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:09:57.947 -07 000000424 INF: FPGA: 'ZDACW 38788' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:09:57.957 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:09:57.967 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:09:57.967 -07 000000461 INF: FPGA: Recv ZDACR 38788
17-03-18 02:09:57.977 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:09:57.977 -07 000000424 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 02:09:58.117 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 02:09:58.117 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:09:58.117 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:09:58.117 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 02:09:58.117 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:09:58.117 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:09:58.127 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:09:58.127 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 02:09:58.127 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:09:58.137 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 02:09:58.147 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:09:58.147 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 224 ms overall
17-03-18 02:09:58.327 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:09:58.327 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 02:09:58.377 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:09:58.387 -07 000000629 INF: FPGA: Recv YRDPOS 127785
17-03-18 02:09:58.387 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:09:58.387 -07 000000569 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:09:58.387 -07 000000569 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 02:09:58.387 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.131 mm/sec
17-03-18 02:09:59.337 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:09:59.337 -07 000000502 INF: FPGA: Recv YRDPOS 127785
17-03-18 02:09:59.347 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:09:59.347 -07 000000569 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:09:59.367 -07 000000569 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:09:59.367 -07 000000569 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:09:59.367 -07 000000569 INF: Y Motor: Moved to 62.3950 after 1454 ms (table move)
17-03-18 02:09:59.377 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177560 mm (DAC = 38788)
17-03-18 02:09:59.377 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:59.377 -07 000000462 INF: FPGA: Recv ZSGSRD 36929
17-03-18 02:09:59.387 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:09:59.387 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:59.387 -07 000000467 INF: FPGA: Recv ZSGSRD 36932
17-03-18 02:09:59.397 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:59.397 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:59.397 -07 000000430 INF: FPGA: Recv ZSGSRD 36935
17-03-18 02:09:59.407 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:59.407 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:59.407 -07 000000569 INF: FPGA: Recv ZSGSRD 36930
17-03-18 02:09:59.417 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:59.417 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:59.417 -07 000000512 INF: FPGA: Recv ZSGSRD 36927
17-03-18 02:09:59.427 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:59.427 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:59.427 -07 000000591 INF: FPGA: Recv ZSGSRD 36928
17-03-18 02:09:59.437 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:59.437 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:59.437 -07 000000430 INF: FPGA: Recv ZSGSRD 36927
17-03-18 02:09:59.447 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:59.447 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:59.447 -07 000000461 INF: FPGA: Recv ZSGSRD 36931
17-03-18 02:09:59.457 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:59.457 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:59.457 -07 000000626 INF: FPGA: Recv ZSGSRD 36931
17-03-18 02:09:59.467 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:59.467 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:09:59.467 -07 000000591 INF: FPGA: Recv ZSGSRD 36939
17-03-18 02:09:59.477 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:59.477 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:09:59.477 -07 000000629 INF: FPGA: Recv ZPIEZORD 33213
17-03-18 02:09:59.487 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:09:59.487 -07 000000606 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.919 V. Piezo Error = -8.2 V.
17-03-18 02:09:59.487 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.6 um, Read 10 ADC samples: Avg = 36931 (-176.7 uncal um), Error = 0.9 uncal um, Median = 36930 (-176.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36927 (-176.7 uncal um), Max = 36939 (-176.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:09:59.487 -07 000000606 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36931, posNoise = 8, negNoise = 4
17-03-18 02:09:59.487 -07 000000606 INF: Z Motor: After move to -0.177560, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:09:59.487 -07 000000606 INF: Z Motor: Settle wait time = 1459 ms, measure time = 107 ms (allowed 150 ms), total time = 1566 ms
17-03-18 02:09:59.487 -07 000000606 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:09:59.537 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 02:09:59.537 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:09:59.537 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:09:59.537 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:09:59.537 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:09:59.537 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:09:59.537 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:09:59.537 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:09:59.547 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:09:59.547 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:09:59.547 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:09:59.547 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:09:59.557 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:09:59.557 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:09:59.557 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:09:59.587 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 3.993549,
17-03-18 02:09:59.597 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:09:59.897 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:09:59.897 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:09:59.897 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:09:59.907 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) start.
17-03-18 02:09:59.937 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:09:59.937 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 02:09:59.937 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:10:00.017 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:10:00.017 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:00.027 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:10:00.027 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 02:10:00.037 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:10:00.037 -07 000000606 INF: Autofocus start
17-03-18 02:10:00.037 -07 000000606 INF: MeasureProfile start
17-03-18 02:10:00.037 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:10:00.047 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:10:00.047 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:10:00.057 -07 000000606 INF: MeasureProfile done
17-03-18 02:10:00.057 -07 000000606 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:10:00.057 -07 000000606 INF: Autofocus finished
17-03-18 02:10:00.247 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:10:00.247 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 02:10:00.257 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.177575930618509. ----------
17-03-18 02:10:00.257 -07 000000610 INF: Cycle	96	Tile	4	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:10:00.257 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37303, sync = True, waitForSettling = True)
17-03-18 02:10:00.257 -07 000000610 INF: Z Motor: Moving to -0.170762 mm, started at -0.177576 mm, distance = 6.81 um
17-03-18 02:10:00.257 -07 000000610 INF: FPGA: Xmit ZDACW 37303\n [Z Motor]
17-03-18 02:10:00.257 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:10:00.267 -07 000000610 INF: FPGA: 'ZDACW 37303' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:10:00.267 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:10:00.267 -07 000000461 INF: FPGA: Recv ZDACR 37303
17-03-18 02:10:00.277 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:00.277 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:10:00.427 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:00.427 -07 000000579 INF: FPGA: Recv ZSGSRD 35868
17-03-18 02:10:00.437 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:00.437 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:00.437 -07 000000629 INF: FPGA: Recv ZSGSRD 35873
17-03-18 02:10:00.447 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:00.447 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:00.447 -07 000000626 INF: FPGA: Recv ZSGSRD 35871
17-03-18 02:10:00.457 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:00.457 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:00.457 -07 000000569 INF: FPGA: Recv ZSGSRD 35870
17-03-18 02:10:00.467 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:00.467 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:00.467 -07 000000461 INF: FPGA: Recv ZSGSRD 35870
17-03-18 02:10:00.477 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:00.477 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:00.477 -07 000000591 INF: FPGA: Recv ZSGSRD 35877
17-03-18 02:10:00.487 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:00.487 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:00.487 -07 000000629 INF: FPGA: Recv ZSGSRD 35871
17-03-18 02:10:00.497 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:00.497 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:00.497 -07 000000444 INF: FPGA: Recv ZSGSRD 35866
17-03-18 02:10:00.507 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:00.507 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:00.507 -07 000000467 INF: FPGA: Recv ZSGSRD 35876
17-03-18 02:10:00.517 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:00.517 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:00.517 -07 000000424 INF: FPGA: Recv ZSGSRD 35870
17-03-18 02:10:00.527 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:00.527 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:10:00.527 -07 000000591 INF: FPGA: Recv ZPIEZORD 31749
17-03-18 02:10:00.537 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:00.537 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.692 V. Piezo Error = -9.1 V.
17-03-18 02:10:00.537 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35871 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35870 (-169.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35866 (-169.9 uncal um), Max = 35877 (-169.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:10:00.537 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35871, posNoise = 6, negNoise = 5
17-03-18 02:10:00.537 -07 000000610 INF: Z Motor: After move to -0.170762, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:10:00.537 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:10:00.537 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:10:00.537 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:10:00.537 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:10:00.537 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:10:00.537 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:10:00.537 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:10:00.537 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:10:00.537 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:10:00.537 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:10:00.537 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:10:00.537 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:10:00.537 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:10:00.547 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:10:00.547 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:10:00.547 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:10:00.547 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:10:00.557 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:10:00.557 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:10:00.557 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:10:00.557 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:10:00.557 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37480 150\n [Camera]
17-03-18 02:10:00.757 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 02:10:01.147 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:10:01.147 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:10:01.147 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:10:01.157 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:10:01.157 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 02:10:01.157 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:10:01.157 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:10:01.157 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:10:01.157 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:10:01.157 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 02:10:01.337 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37480 778
17-03-18 02:10:01.467 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:10:01.467 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:10:01.487 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:10:01.547 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 02:10:01.547 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:10:01.547 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:01.547 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 02:10:01.547 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:10:01.547 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:01.547 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:10:01.547 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:10:01.557 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:10:01.557 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:10:01.677 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:10:01.677 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:10:01.677 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:10:01.677 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:10:01.677 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 02:10:01.687 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:10:01.687 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:10:01.687 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:10:01.687 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:10:01.687 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 02:10:01.867 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:10:01.867 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:10:01.877 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37480 150' command took 2 ms to send, 1309 ms to get response, and 1316 ms overall
17-03-18 02:10:01.877 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:10:01.877 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.170766265748242. ------
17-03-18 02:10:02.007 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17728 mm
17-03-18 02:10:02.007 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:10:02.007 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:10:02.007 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 02:10:02.007 -07 000000579 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 02:10:02.007 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:10:02.007 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 38727, sync = True, waitForSettling = False)
17-03-18 02:10:02.007 -07 000000590 INF: Z Motor: Moving to -0.177281 mm, started at -0.170766 mm, distance = -6.51 um
17-03-18 02:10:02.017 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:10:02.017 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:02.017 -07 000000606 INF: FPGA: Recv YRDPOS 127785
17-03-18 02:10:02.027 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:10:02.027 -07 000000579 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:02.027 -07 000000579 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:10:02.027 -07 000000579 INF: Y Motor: Moving 1340 steps-16
17-03-18 02:10:02.027 -07 000000590 INF: FPGA: Xmit ZDACW 38727\n [Z Motor]
17-03-18 02:10:02.027 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:10:02.037 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:10:02.037 -07 000000590 INF: FPGA: 'ZDACW 38727' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:10:02.047 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:10:02.057 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:10:02.057 -07 000000461 INF: FPGA: Recv ZDACR 38727
17-03-18 02:10:02.067 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:10:02.067 -07 000000590 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 02:10:02.087 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:10:02.087 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:10:02.087 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:02.087 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:10:02.087 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:10:02.087 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:02.087 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:10:02.087 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:10:02.087 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 02:10:02.097 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:10:02.237 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:10:02.237 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:10:02.427 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 02:10:02.427 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 401 ms overall
17-03-18 02:10:02.467 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:02.467 -07 000000467 INF: FPGA: Recv YRDPOS 129481
17-03-18 02:10:02.477 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:10:02.477 -07 000000579 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:02.477 -07 000000579 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:10:02.477 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.838 mm, average velocity = 2.089 mm/sec
17-03-18 02:10:03.427 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:03.427 -07 000000502 INF: FPGA: Recv YRDPOS 129482
17-03-18 02:10:03.437 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:10:03.437 -07 000000579 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:03.457 -07 000000579 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:10:03.457 -07 000000579 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:10:03.457 -07 000000579 INF: Y Motor: Moved to 63.2236 after 1450 ms (table move)
17-03-18 02:10:03.467 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177281 mm (DAC = 38727)
17-03-18 02:10:03.467 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:03.467 -07 000000455 INF: FPGA: Recv ZSGSRD 36897
17-03-18 02:10:03.477 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:10:03.477 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:03.477 -07 000000569 INF: FPGA: Recv ZSGSRD 36889
17-03-18 02:10:03.487 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:03.487 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:03.487 -07 000000591 INF: FPGA: Recv ZSGSRD 36879
17-03-18 02:10:03.497 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:03.497 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:03.497 -07 000000462 INF: FPGA: Recv ZSGSRD 36884
17-03-18 02:10:03.507 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:10:03.507 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:03.507 -07 000000579 INF: FPGA: Recv ZSGSRD 36889
17-03-18 02:10:03.517 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:03.517 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:03.517 -07 000000606 INF: FPGA: Recv ZSGSRD 36888
17-03-18 02:10:03.527 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:03.527 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:03.527 -07 000000512 INF: FPGA: Recv ZSGSRD 36892
17-03-18 02:10:03.537 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:03.537 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:03.537 -07 000000462 INF: FPGA: Recv ZSGSRD 36890
17-03-18 02:10:03.547 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:03.547 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:03.547 -07 000000424 INF: FPGA: Recv ZSGSRD 36886
17-03-18 02:10:03.557 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:03.557 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:03.557 -07 000000430 INF: FPGA: Recv ZSGSRD 36886
17-03-18 02:10:03.567 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:03.567 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:10:03.567 -07 000000626 INF: FPGA: Recv ZPIEZORD 33138
17-03-18 02:10:03.577 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:03.577 -07 000000444 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.909 V. Piezo Error = -8.3 V.
17-03-18 02:10:03.577 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36888 (-176.4 uncal um), Error = 0.9 uncal um, Median = 36888 (-176.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36879 (-176.3 uncal um), Max = 36897 (-176.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:10:03.577 -07 000000444 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36888, posNoise = 9, negNoise = 9
17-03-18 02:10:03.577 -07 000000444 INF: Z Motor: After move to -0.177281, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:10:03.577 -07 000000444 INF: Z Motor: Settle wait time = 1453 ms, measure time = 109 ms (allowed 150 ms), total time = 1562 ms
17-03-18 02:10:03.577 -07 000000444 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:10:03.627 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 02:10:03.627 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:10:03.627 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:10:03.627 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:10:03.627 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:10:03.627 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:10:03.627 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:10:03.627 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:10:03.627 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:10:03.627 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:10:03.637 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:10:03.637 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:10:03.647 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:10:03.647 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:10:03.647 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:10:03.696 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:10:03.986 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:10:03.986 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:10:03.996 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:10:03.996 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:10:04.026 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:10:04.026 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 02:10:04.026 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 02:10:04.106 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:10:04.106 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:04.106 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:10:04.106 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:10:04.136 -07 000000569 INF: Autofocus start
17-03-18 02:10:04.136 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:10:04.136 -07 000000569 INF: MeasureProfile start
17-03-18 02:10:04.136 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:10:04.146 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:10:04.146 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:10:04.146 -07 000000569 INF: MeasureProfile done
17-03-18 02:10:04.146 -07 000000569 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:10:04.146 -07 000000569 INF: Autofocus finished
17-03-18 02:10:04.346 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:10:04.346 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-18 02:10:04.356 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.177299689496413. ----------
17-03-18 02:10:04.356 -07 000000610 INF: Cycle	96	Tile	5	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:10:04.356 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37242, sync = True, waitForSettling = True)
17-03-18 02:10:04.356 -07 000000610 INF: Z Motor: Moving to -0.170483 mm, started at -0.177300 mm, distance = 6.82 um
17-03-18 02:10:04.356 -07 000000610 INF: FPGA: Xmit ZDACW 37242\n [Z Motor]
17-03-18 02:10:04.356 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:10:04.366 -07 000000610 INF: FPGA: 'ZDACW 37242' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:10:04.366 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:10:04.366 -07 000000461 INF: FPGA: Recv ZDACR 37242
17-03-18 02:10:04.376 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:04.376 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:10:04.526 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:04.526 -07 000000561 INF: FPGA: Recv ZSGSRD 35830
17-03-18 02:10:04.536 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:10:04.536 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:04.536 -07 000000502 INF: FPGA: Recv ZSGSRD 35833
17-03-18 02:10:04.546 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:04.556 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:04.556 -07 000000561 INF: FPGA: Recv ZSGSRD 35835
17-03-18 02:10:04.566 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:10:04.586 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:04.586 -07 000000591 INF: FPGA: Recv ZSGSRD 35831
17-03-18 02:10:04.596 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:10:04.596 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:04.596 -07 000000576 INF: FPGA: Recv ZSGSRD 35828
17-03-18 02:10:04.606 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:04.626 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:04.626 -07 000000455 INF: FPGA: Recv ZSGSRD 35832
17-03-18 02:10:04.636 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:10:04.646 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:04.646 -07 000000591 INF: FPGA: Recv ZSGSRD 35826
17-03-18 02:10:04.656 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:10:04.656 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:04.656 -07 000000430 INF: FPGA: Recv ZSGSRD 35829
17-03-18 02:10:04.666 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:04.666 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:04.666 -07 000000444 INF: FPGA: Recv ZSGSRD 35830
17-03-18 02:10:04.676 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:04.676 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:04.676 -07 000000579 INF: FPGA: Recv ZSGSRD 35835
17-03-18 02:10:04.686 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:04.686 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:10:04.686 -07 000000461 INF: FPGA: Recv ZPIEZORD 31731
17-03-18 02:10:04.696 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:04.696 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.683 V. Piezo Error = -9.0 V.
17-03-18 02:10:04.696 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35831 (-169.6 uncal um), Error = 0.8 uncal um, Median = 35830 (-169.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35826 (-169.6 uncal um), Max = 35835 (-169.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:10:04.696 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35831, posNoise = 4, negNoise = 5
17-03-18 02:10:04.696 -07 000000610 INF: Z Motor: After move to -0.170483, error = -0.000026, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:10:04.696 -07 000000610 INF: Z Motor: MoveAbsStepped took 336 ms)
17-03-18 02:10:04.696 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:10:04.696 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:10:04.696 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:10:04.696 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:10:04.696 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:10:04.696 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:10:04.696 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:10:04.696 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:10:04.696 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:10:04.696 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:10:04.696 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:10:04.696 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:10:04.706 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:10:04.706 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:10:04.706 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:10:04.706 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:10:04.716 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:10:04.716 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:10:04.716 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:10:04.716 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:10:04.716 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37418 150\n [Camera]
17-03-18 02:10:04.916 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:10:04.956 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 3.979922,
17-03-18 02:10:05.306 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:10:05.306 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:10:05.306 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:10:05.306 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:10:05.306 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:10:05.316 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:10:05.316 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:10:05.316 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:10:05.316 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:10:05.316 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:10:05.496 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37418 778
17-03-18 02:10:05.646 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:10:05.686 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 02:10:05.686 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 02:10:05.686 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:05.696 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:10:05.696 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:10:05.696 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:05.696 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:10:05.696 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:10:05.696 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:10:05.706 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:10:05.836 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:10:05.836 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:10:05.836 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:10:05.846 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:10:05.846 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:10:05.846 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:10:05.846 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:10:05.846 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:10:05.846 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:10:05.846 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 02:10:06.026 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:10:06.036 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:10:06.036 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37418 150' command took 4 ms to send, 1310 ms to get response, and 1317 ms overall
17-03-18 02:10:06.036 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:10:06.036 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.170509297262572. ------
17-03-18 02:10:06.156 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:10:06.156 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17659 mm
17-03-18 02:10:06.156 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:10:06.156 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:10:06.156 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 02:10:06.156 -07 000000461 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-18 02:10:06.156 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 38575, sync = True, waitForSettling = False)
17-03-18 02:10:06.156 -07 000000590 INF: Z Motor: Moving to -0.176585 mm, started at -0.170509 mm, distance = -6.08 um
17-03-18 02:10:06.166 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:06.166 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:10:06.176 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:06.176 -07 000000467 INF: FPGA: Recv YRDPOS 129482
17-03-18 02:10:06.186 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:10:06.186 -07 000000461 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:06.186 -07 000000461 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:10:06.186 -07 000000461 INF: Y Motor: Moving 1342 steps-19
17-03-18 02:10:06.186 -07 000000590 INF: FPGA: Xmit ZDACW 38575\n [Z Motor]
17-03-18 02:10:06.186 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:10:06.196 -07 000000590 INF: FPGA: 'ZDACW 38575' command took 1 ms to send, 0 ms to get response, and 35 ms overall
17-03-18 02:10:06.196 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:10:06.196 -07 000000462 INF: FPGA: Recv ZDACR 38575
17-03-18 02:10:06.206 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:06.206 -07 000000590 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 02:10:06.206 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:10:06.236 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:10:06.236 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:10:06.236 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:06.236 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 02:10:06.236 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:10:06.236 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:06.246 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:10:06.246 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:10:06.246 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:10:06.256 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:10:06.366 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:10:06.366 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:10:06.466 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:10:06.466 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:10:06.576 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:10:06.576 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 02:10:06.626 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:06.626 -07 000000444 INF: FPGA: Recv YRDPOS 131187
17-03-18 02:10:06.636 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:10:06.636 -07 000000461 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:06.636 -07 000000461 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 02:10:06.636 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.108 mm/sec
17-03-18 02:10:07.586 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:07.586 -07 000000455 INF: FPGA: Recv YRDPOS 131187
17-03-18 02:10:07.596 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:10:07.596 -07 000000461 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:07.616 -07 000000461 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:10:07.616 -07 000000461 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:10:07.616 -07 000000461 INF: Y Motor: Moved to 64.0562 after 1463 ms (table move)
17-03-18 02:10:07.626 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176585 mm (DAC = 38575)
17-03-18 02:10:07.626 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:07.626 -07 000000512 INF: FPGA: Recv ZSGSRD 36781
17-03-18 02:10:07.636 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:07.636 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:07.636 -07 000000430 INF: FPGA: Recv ZSGSRD 36781
17-03-18 02:10:07.646 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:07.646 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:07.646 -07 000000455 INF: FPGA: Recv ZSGSRD 36777
17-03-18 02:10:07.656 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:07.656 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:07.656 -07 000000424 INF: FPGA: Recv ZSGSRD 36781
17-03-18 02:10:07.666 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:07.666 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:07.666 -07 000000502 INF: FPGA: Recv ZSGSRD 36777
17-03-18 02:10:07.676 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:07.676 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:07.676 -07 000000579 INF: FPGA: Recv ZSGSRD 36777
17-03-18 02:10:07.686 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:07.686 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:07.686 -07 000000512 INF: FPGA: Recv ZSGSRD 36774
17-03-18 02:10:07.696 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:07.696 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:07.696 -07 000000590 INF: FPGA: Recv ZSGSRD 36777
17-03-18 02:10:07.706 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:07.706 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:07.706 -07 000000462 INF: FPGA: Recv ZSGSRD 36778
17-03-18 02:10:07.716 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:07.716 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:07.716 -07 000000424 INF: FPGA: Recv ZSGSRD 36783
17-03-18 02:10:07.726 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:07.726 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:10:07.726 -07 000000606 INF: FPGA: Recv ZPIEZORD 32999
17-03-18 02:10:07.736 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:07.736 -07 000000569 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.886 V. Piezo Error = -8.4 V.
17-03-18 02:10:07.736 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.6 um, Read 10 ADC samples: Avg = 36779 (-175.7 uncal um), Error = 0.9 uncal um, Median = 36778 (-175.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36774 (-175.7 uncal um), Max = 36783 (-175.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:10:07.736 -07 000000569 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36779, posNoise = 4, negNoise = 5
17-03-18 02:10:07.736 -07 000000569 INF: Z Motor: After move to -0.176585, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:10:07.736 -07 000000569 INF: Z Motor: Settle wait time = 1466 ms, measure time = 110 ms (allowed 150 ms), total time = 1576 ms
17-03-18 02:10:07.736 -07 000000569 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:10:07.776 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 02:10:07.776 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:10:07.776 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:10:07.776 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:10:07.776 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:10:07.776 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:10:07.776 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:10:07.776 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:10:07.776 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:10:07.776 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:10:07.786 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:10:07.786 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:10:07.786 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:10:07.786 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:10:07.796 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:10:07.836 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:10:08.136 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:10:08.136 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:10:08.136 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:10:08.136 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:10:08.176 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:10:08.176 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 02:10:08.176 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 02:10:08.256 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:10:08.256 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:08.256 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:10:08.256 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:10:08.276 -07 000000626 INF: Autofocus start
17-03-18 02:10:08.276 -07 000000626 INF: MeasureProfile start
17-03-18 02:10:08.276 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:10:08.276 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:10:08.286 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:10:08.286 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:10:08.286 -07 000000626 INF: MeasureProfile done
17-03-18 02:10:08.286 -07 000000626 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:10:08.286 -07 000000626 INF: Autofocus finished
17-03-18 02:10:08.486 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:10:08.486 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:10:08.486 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.176599450372961. ----------
17-03-18 02:10:08.486 -07 000000610 INF: Cycle	96	Tile	6	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:10:08.496 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37090, sync = True, waitForSettling = True)
17-03-18 02:10:08.496 -07 000000610 INF: Z Motor: Moving to -0.169787 mm, started at -0.176599 mm, distance = 6.81 um
17-03-18 02:10:08.496 -07 000000610 INF: FPGA: Xmit ZDACW 37090\n [Z Motor]
17-03-18 02:10:08.496 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:10:08.506 -07 000000610 INF: FPGA: 'ZDACW 37090' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:10:08.506 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:10:08.506 -07 000000626 INF: FPGA: Recv ZDACR 37090
17-03-18 02:10:08.516 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:08.516 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:10:08.666 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:08.666 -07 000000444 INF: FPGA: Recv ZSGSRD 35723
17-03-18 02:10:08.676 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:08.676 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:08.676 -07 000000430 INF: FPGA: Recv ZSGSRD 35720
17-03-18 02:10:08.686 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:08.686 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:08.686 -07 000000455 INF: FPGA: Recv ZSGSRD 35722
17-03-18 02:10:08.696 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:08.696 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:08.696 -07 000000629 INF: FPGA: Recv ZSGSRD 35722
17-03-18 02:10:08.706 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:08.706 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:08.706 -07 000000430 INF: FPGA: Recv ZSGSRD 35721
17-03-18 02:10:08.716 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:08.716 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:08.716 -07 000000461 INF: FPGA: Recv ZSGSRD 35729
17-03-18 02:10:08.726 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:08.726 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:08.726 -07 000000444 INF: FPGA: Recv ZSGSRD 35718
17-03-18 02:10:08.736 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:08.736 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:08.736 -07 000000606 INF: FPGA: Recv ZSGSRD 35718
17-03-18 02:10:08.746 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:08.746 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:08.746 -07 000000561 INF: FPGA: Recv ZSGSRD 35715
17-03-18 02:10:08.756 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:08.756 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:08.756 -07 000000430 INF: FPGA: Recv ZSGSRD 35722
17-03-18 02:10:08.766 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:08.766 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:10:08.766 -07 000000579 INF: FPGA: Recv ZPIEZORD 31554
17-03-18 02:10:08.776 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:08.776 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.660 V. Piezo Error = -9.2 V.
17-03-18 02:10:08.776 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35721 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35722 (-168.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35715 (-168.9 uncal um), Max = 35729 (-169.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:10:08.776 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35721, posNoise = 8, negNoise = 6
17-03-18 02:10:08.776 -07 000000610 INF: Z Motor: After move to -0.169787, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:10:08.776 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:10:08.776 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:10:08.776 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:10:08.776 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:10:08.776 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:10:08.776 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:10:08.776 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:10:08.776 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:10:08.776 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:10:08.776 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:10:08.776 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:10:08.776 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:10:08.776 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:10:08.786 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:10:08.786 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:10:08.786 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:10:08.786 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:10:08.796 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:10:08.796 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:10:08.796 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:10:08.796 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:10:08.796 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37267 150\n [Camera]
17-03-18 02:10:08.996 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:10:09.386 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:10:09.386 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:10:09.386 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:10:09.396 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:10:09.396 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:10:09.396 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:10:09.396 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:10:09.396 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:10:09.396 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:10:09.396 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:10:09.586 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37267 778
17-03-18 02:10:09.726 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:10:09.786 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 02:10:09.786 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:10:09.786 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:09.786 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 02:10:09.786 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:10:09.786 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:09.786 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:10:09.786 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:10:09.786 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:10:09.796 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:10:09.916 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:10:09.916 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:10:09.926 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:10:09.926 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:10:09.926 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:10:09.926 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:10:09.926 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:10:09.926 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 02:10:09.936 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:10:09.936 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 02:10:10.116 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:10:10.116 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:10:10.116 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37267 150' command took 2 ms to send, 1311 ms to get response, and 1317 ms overall
17-03-18 02:10:10.116 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:10:10.116 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.169802633926978. ------
17-03-18 02:10:10.116 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:10:10.116 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17613 mm
17-03-18 02:10:10.116 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:10:10.126 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:10:10.126 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:10:10.126 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 02:10:10.126 -07 000000629 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 02:10:10.126 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38476, sync = True, waitForSettling = False)
17-03-18 02:10:10.126 -07 000000462 INF: Z Motor: Moving to -0.176132 mm, started at -0.169803 mm, distance = -6.33 um
17-03-18 02:10:10.126 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:10:10.136 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:10.136 -07 000000424 INF: FPGA: Recv YRDPOS 131188
17-03-18 02:10:10.146 -07 000000462 INF: FPGA: Xmit ZDACW 38476\n [Z Motor]
17-03-18 02:10:10.146 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 02:10:10.146 -07 000000629 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:10.146 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:10:10.146 -07 000000629 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:10:10.146 -07 000000629 INF: Y Motor: Moving 1338 steps-13
17-03-18 02:10:10.156 -07 000000462 INF: FPGA: 'ZDACW 38476' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:10:10.156 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:10:10.166 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:10:10.166 -07 000000424 INF: FPGA: Recv ZDACR 38476
17-03-18 02:10:10.176 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:10:10.176 -07 000000462 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 02:10:10.316 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 3.983999,
17-03-18 02:10:10.326 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:10:10.326 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 196 ms to get response, and 203 ms overall
17-03-18 02:10:10.326 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 02:10:10.326 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:10:10.326 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:10.326 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 02:10:10.326 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:10:10.326 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:10.336 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:10:10.336 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 02:10:10.336 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 02:10:10.336 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 02:10:10.536 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 02:10:10.536 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 385 ms overall
17-03-18 02:10:10.576 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:10.576 -07 000000430 INF: FPGA: Recv YRDPOS 132871
17-03-18 02:10:10.586 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:10:10.586 -07 000000629 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:10.586 -07 000000629 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:10:10.586 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.836 mm, average velocity = 2.173 mm/sec
17-03-18 02:10:11.466 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:10:11.466 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:10:11.536 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:11.536 -07 000000430 INF: FPGA: Recv YRDPOS 132871
17-03-18 02:10:11.546 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:10:11.546 -07 000000629 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:11.566 -07 000000629 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:10:11.566 -07 000000629 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:10:11.566 -07 000000629 INF: Y Motor: Moved to 64.8784 after 1446 ms (table move)
17-03-18 02:10:11.576 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176132 mm (DAC = 38476)
17-03-18 02:10:11.576 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:11.576 -07 000000569 INF: FPGA: Recv ZSGSRD 36715
17-03-18 02:10:11.586 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:10:11.586 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:11.586 -07 000000430 INF: FPGA: Recv ZSGSRD 36713
17-03-18 02:10:11.596 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:11.596 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:11.596 -07 000000462 INF: FPGA: Recv ZSGSRD 36702
17-03-18 02:10:11.606 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:11.606 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:11.606 -07 000000512 INF: FPGA: Recv ZSGSRD 36707
17-03-18 02:10:11.616 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:11.616 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:11.616 -07 000000579 INF: FPGA: Recv ZSGSRD 36700
17-03-18 02:10:11.626 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:11.626 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:11.626 -07 000000455 INF: FPGA: Recv ZSGSRD 36711
17-03-18 02:10:11.636 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:11.636 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:11.636 -07 000000430 INF: FPGA: Recv ZSGSRD 36711
17-03-18 02:10:11.646 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:11.646 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:11.646 -07 000000590 INF: FPGA: Recv ZSGSRD 36706
17-03-18 02:10:11.656 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:10:11.656 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:11.656 -07 000000467 INF: FPGA: Recv ZSGSRD 36702
17-03-18 02:10:11.666 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:11.666 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:11.666 -07 000000569 INF: FPGA: Recv ZSGSRD 36708
17-03-18 02:10:11.676 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:10:11.676 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:10:11.676 -07 000000462 INF: FPGA: Recv ZPIEZORD 32898
17-03-18 02:10:11.686 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:11.686 -07 000000626 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.871 V. Piezo Error = -8.4 V.
17-03-18 02:10:11.686 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.1 um, Read 10 ADC samples: Avg = 36708 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36708 (-175.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36700 (-175.2 uncal um), Max = 36715 (-175.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:10:11.686 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36708, posNoise = 7, negNoise = 8
17-03-18 02:10:11.686 -07 000000626 INF: Z Motor: After move to -0.176132, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:10:11.686 -07 000000626 INF: Z Motor: Settle wait time = 1449 ms, measure time = 108 ms (allowed 150 ms), total time = 1557 ms
17-03-18 02:10:11.686 -07 000000626 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:10:11.736 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 02:10:11.736 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:10:11.736 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:10:11.736 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:10:11.736 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:10:11.736 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:10:11.736 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:10:11.736 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:10:11.736 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:10:11.736 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:10:11.746 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 02:10:11.746 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:10:11.746 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:10:11.746 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 02:10:11.756 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:10:11.796 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:10:12.096 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:10:12.096 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:10:12.096 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:10:12.096 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) start.
17-03-18 02:10:12.136 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:10:12.136 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 02:10:12.136 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall
17-03-18 02:10:12.216 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:10:12.216 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:12.216 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:10:12.216 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:10:12.236 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:10:12.236 -07 000000424 INF: Autofocus start
17-03-18 02:10:12.236 -07 000000424 INF: MeasureProfile start
17-03-18 02:10:12.236 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:10:12.246 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:10:12.246 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:10:12.256 -07 000000424 INF: MeasureProfile done
17-03-18 02:10:12.256 -07 000000424 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:10:12.256 -07 000000424 INF: Autofocus finished
17-03-18 02:10:12.446 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:10:12.446 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:10:12.446 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.176143331310896. ----------
17-03-18 02:10:12.446 -07 000000610 INF: Cycle	96	Tile	7	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:10:12.456 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37008, sync = True, waitForSettling = True)
17-03-18 02:10:12.456 -07 000000610 INF: Z Motor: Moving to -0.169412 mm, started at -0.176143 mm, distance = 6.73 um
17-03-18 02:10:12.456 -07 000000610 INF: FPGA: Xmit ZDACW 37008\n [Z Motor]
17-03-18 02:10:12.456 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:10:12.466 -07 000000610 INF: FPGA: 'ZDACW 37008' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:12.466 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:10:12.466 -07 000000576 INF: FPGA: Recv ZDACR 37008
17-03-18 02:10:12.476 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:12.476 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:10:12.626 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:12.626 -07 000000462 INF: FPGA: Recv ZSGSRD 35664
17-03-18 02:10:12.636 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:10:12.636 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:12.636 -07 000000455 INF: FPGA: Recv ZSGSRD 35668
17-03-18 02:10:12.646 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:12.646 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:12.646 -07 000000467 INF: FPGA: Recv ZSGSRD 35664
17-03-18 02:10:12.656 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:12.656 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:12.656 -07 000000579 INF: FPGA: Recv ZSGSRD 35657
17-03-18 02:10:12.666 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:12.666 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:12.666 -07 000000591 INF: FPGA: Recv ZSGSRD 35669
17-03-18 02:10:12.676 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:12.676 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:12.676 -07 000000462 INF: FPGA: Recv ZSGSRD 35667
17-03-18 02:10:12.686 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:12.686 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:12.686 -07 000000629 INF: FPGA: Recv ZSGSRD 35667
17-03-18 02:10:12.696 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:12.696 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:12.696 -07 000000467 INF: FPGA: Recv ZSGSRD 35661
17-03-18 02:10:12.706 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:12.706 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:12.706 -07 000000626 INF: FPGA: Recv ZSGSRD 35666
17-03-18 02:10:12.716 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:12.716 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:12.716 -07 000000430 INF: FPGA: Recv ZSGSRD 35672
17-03-18 02:10:12.726 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:12.726 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:10:12.726 -07 000000444 INF: FPGA: Recv ZPIEZORD 31486
17-03-18 02:10:12.736 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:12.736 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.647 V. Piezo Error = -9.2 V.
17-03-18 02:10:12.736 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35666 (-168.6 uncal um), Error = 0.8 uncal um, Median = 35666 (-168.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35657 (-168.5 uncal um), Max = 35672 (-168.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:10:12.736 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35666, posNoise = 6, negNoise = 9
17-03-18 02:10:12.736 -07 000000610 INF: Z Motor: After move to -0.169412, error = -0.000038, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:10:12.736 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:10:12.736 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:10:12.736 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:10:12.736 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:10:12.736 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:10:12.736 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:10:12.736 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:10:12.736 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:10:12.736 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:10:12.736 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:10:12.736 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:10:12.736 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:10:12.736 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:10:12.736 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:10:12.746 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:10:12.746 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:10:12.746 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:10:12.756 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:10:12.756 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:10:12.756 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:10:12.756 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:10:12.756 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37185 150\n [Camera]
17-03-18 02:10:12.956 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:10:13.346 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:10:13.346 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:10:13.356 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:10:13.356 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:10:13.356 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:10:13.356 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:10:13.356 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:10:13.356 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:10:13.356 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:10:13.356 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:10:13.536 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37185 778
17-03-18 02:10:13.686 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:10:13.736 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 02:10:13.736 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 02:10:13.736 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:13.736 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 02:10:13.736 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:10:13.736 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:13.736 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:10:13.736 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:10:13.736 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:10:13.746 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:10:13.876 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:10:13.876 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:10:13.876 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:10:13.886 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:10:13.886 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:10:13.886 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:10:13.886 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:10:13.886 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:10:13.886 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:10:13.886 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:10:14.066 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:10:14.076 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:10:14.076 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37185 150' command took 2 ms to send, 1310 ms to get response, and 1316 ms overall
17-03-18 02:10:14.076 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:10:14.076 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.169449302259181. ------
17-03-18 02:10:14.076 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:10:14.076 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17604 mm
17-03-18 02:10:14.076 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:10:14.076 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 02:10:14.076 -07 000000629 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 02:10:14.076 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:10:14.086 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:10:14.086 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38457, sync = True, waitForSettling = False)
17-03-18 02:10:14.086 -07 000000569 INF: Z Motor: Moving to -0.176045 mm, started at -0.169449 mm, distance = -6.60 um
17-03-18 02:10:14.086 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:14.086 -07 000000591 INF: FPGA: Recv YRDPOS 132871
17-03-18 02:10:14.206 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 121 ms overall
17-03-18 02:10:14.206 -07 000000629 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:14.206 -07 000000629 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:10:14.206 -07 000000629 INF: Y Motor: Moving 1351 steps-29
17-03-18 02:10:14.206 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:10:14.216 -07 000000569 INF: FPGA: Xmit ZDACW 38457\n [Z Motor]
17-03-18 02:10:14.216 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:10:14.226 -07 000000569 INF: FPGA: 'ZDACW 38457' command took 0 ms to send, 0 ms to get response, and 139 ms overall
17-03-18 02:10:14.226 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:10:14.236 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:10:14.236 -07 000000462 INF: FPGA: Recv ZDACR 38457
17-03-18 02:10:14.246 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:10:14.246 -07 000000569 INF: Z Motor: MoveAbsStepped took 159 ms (did NOT wait for settling yet))
17-03-18 02:10:14.276 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:10:14.276 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:10:14.276 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:14.276 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 02:10:14.276 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:10:14.276 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:14.286 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:10:14.286 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:10:14.286 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:10:14.286 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 02:10:14.406 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:10:14.406 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 324 ms overall
17-03-18 02:10:14.596 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 02:10:14.596 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:10:14.646 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:14.646 -07 000000430 INF: FPGA: Recv YRDPOS 134581
17-03-18 02:10:14.656 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:10:14.656 -07 000000629 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:14.656 -07 000000629 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:10:14.656 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 02:10:15.606 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:15.606 -07 000000606 INF: FPGA: Recv YRDPOS 134581
17-03-18 02:10:15.616 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:10:15.616 -07 000000629 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:15.646 -07 000000629 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:10:15.646 -07 000000629 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:10:15.646 -07 000000629 INF: Y Motor: Moved to 65.7134 after 1564 ms (table move)
17-03-18 02:10:15.646 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176045 mm (DAC = 38457)
17-03-18 02:10:15.646 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:15.656 -07 000000455 INF: FPGA: Recv ZSGSRD 36698
17-03-18 02:10:15.656 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:10:15.656 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:15.656 -07 000000512 INF: FPGA: Recv ZSGSRD 36690
17-03-18 02:10:15.666 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:10:15.676 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:15.676 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 3.988112,
17-03-18 02:10:15.676 -07 000000576 INF: FPGA: Recv ZSGSRD 36689
17-03-18 02:10:15.686 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:10:15.696 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:15.696 -07 000000430 INF: FPGA: Recv ZSGSRD 36692
17-03-18 02:10:15.706 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:10:15.706 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:15.706 -07 000000591 INF: FPGA: Recv ZSGSRD 36690
17-03-18 02:10:15.716 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:15.726 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:15.726 -07 000000606 INF: FPGA: Recv ZSGSRD 36698
17-03-18 02:10:15.736 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:10:15.736 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:15.736 -07 000000430 INF: FPGA: Recv ZSGSRD 36693
17-03-18 02:10:15.746 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:15.756 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:15.756 -07 000000626 INF: FPGA: Recv ZSGSRD 36690
17-03-18 02:10:15.766 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:10:15.766 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:15.766 -07 000000444 INF: FPGA: Recv ZSGSRD 36694
17-03-18 02:10:15.776 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:15.786 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:15.786 -07 000000467 INF: FPGA: Recv ZSGSRD 36692
17-03-18 02:10:15.796 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:10:15.796 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:10:15.796 -07 000000430 INF: FPGA: Recv ZPIEZORD 32891
17-03-18 02:10:15.806 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:15.806 -07 000000579 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.868 V. Piezo Error = -8.4 V.
17-03-18 02:10:15.806 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36693 (-175.2 uncal um), Error = 0.9 uncal um, Median = 36692 (-175.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36689 (-175.1 uncal um), Max = 36698 (-175.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:10:15.806 -07 000000579 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36693, posNoise = 5, negNoise = 4
17-03-18 02:10:15.806 -07 000000579 INF: Z Motor: After move to -0.176045, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:10:15.806 -07 000000579 INF: Z Motor: Settle wait time = 1567 ms, measure time = 153 ms (allowed 150 ms), total time = 1720 ms
17-03-18 02:10:15.806 -07 000000579 INF: Z Motor: Warning: Actual position measuring time = 153 ms, longer than max expected time of 150 ms
17-03-18 02:10:15.806 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1724 ms
17-03-18 02:10:15.806 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:10:15.806 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:10:15.806 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:10:15.806 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:10:15.806 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:10:15.806 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:10:15.806 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:10:15.806 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:10:15.806 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:10:15.816 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:10:15.816 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:10:15.816 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:10:15.816 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:10:15.826 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:10:15.866 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:10:16.166 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:10:16.166 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:10:16.166 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:10:16.166 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:10:16.206 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:10:16.206 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 02:10:16.206 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:10:16.286 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:10:16.286 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:16.286 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:10:16.286 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:10:16.306 -07 000000512 INF: Autofocus start
17-03-18 02:10:16.306 -07 000000512 INF: MeasureProfile start
17-03-18 02:10:16.306 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:10:16.306 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:10:16.316 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:10:16.316 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:10:16.316 -07 000000512 INF: MeasureProfile done
17-03-18 02:10:16.316 -07 000000512 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:10:16.316 -07 000000512 INF: Autofocus finished
17-03-18 02:10:16.466 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:10:16.466 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:10:16.516 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:10:16.516 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:10:16.516 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.17604696812877. ----------
17-03-18 02:10:16.516 -07 000000610 INF: Cycle	96	Tile	8	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:10:16.526 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36954, sync = True, waitForSettling = True)
17-03-18 02:10:16.526 -07 000000610 INF: Z Motor: Moving to -0.169165 mm, started at -0.176047 mm, distance = 6.88 um
17-03-18 02:10:16.526 -07 000000610 INF: FPGA: Xmit ZDACW 36954\n [Z Motor]
17-03-18 02:10:16.526 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:10:16.536 -07 000000610 INF: FPGA: 'ZDACW 36954' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:10:16.536 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:10:16.536 -07 000000461 INF: FPGA: Recv ZDACR 36954
17-03-18 02:10:16.546 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:16.546 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:10:16.696 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:16.696 -07 000000629 INF: FPGA: Recv ZSGSRD 35621
17-03-18 02:10:16.706 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:10:16.706 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:16.706 -07 000000576 INF: FPGA: Recv ZSGSRD 35620
17-03-18 02:10:16.716 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:16.716 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:16.716 -07 000000561 INF: FPGA: Recv ZSGSRD 35624
17-03-18 02:10:16.726 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:16.726 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:16.726 -07 000000444 INF: FPGA: Recv ZSGSRD 35623
17-03-18 02:10:16.736 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:16.736 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:16.736 -07 000000424 INF: FPGA: Recv ZSGSRD 35621
17-03-18 02:10:16.746 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:16.746 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:16.746 -07 000000579 INF: FPGA: Recv ZSGSRD 35624
17-03-18 02:10:16.756 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:16.756 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:16.756 -07 000000591 INF: FPGA: Recv ZSGSRD 35625
17-03-18 02:10:16.766 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:16.766 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:16.766 -07 000000606 INF: FPGA: Recv ZSGSRD 35614
17-03-18 02:10:16.776 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:16.776 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:16.776 -07 000000626 INF: FPGA: Recv ZSGSRD 35620
17-03-18 02:10:16.786 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:16.786 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:16.786 -07 000000455 INF: FPGA: Recv ZSGSRD 35625
17-03-18 02:10:16.796 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:16.796 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:10:16.796 -07 000000502 INF: FPGA: Recv ZPIEZORD 31461
17-03-18 02:10:16.806 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:16.806 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.639 V. Piezo Error = -9.2 V.
17-03-18 02:10:16.806 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35622 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35622 (-168.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35614 (-168.2 uncal um), Max = 35625 (-168.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:10:16.806 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35622, posNoise = 3, negNoise = 8
17-03-18 02:10:16.806 -07 000000610 INF: Z Motor: After move to -0.169165, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:10:16.806 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:10:16.806 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:10:16.806 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:10:16.806 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:10:16.806 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:10:16.806 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:10:16.806 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:10:16.806 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:10:16.806 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:10:16.806 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:10:16.806 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:10:16.806 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:10:16.806 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:10:16.816 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:10:16.816 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:10:16.816 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:10:16.816 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:10:16.826 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:10:16.826 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:10:16.826 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:10:16.826 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:10:16.826 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37131 150\n [Camera]
17-03-18 02:10:17.026 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:10:17.426 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:10:17.426 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:10:17.426 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:10:17.426 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:10:17.426 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:10:17.426 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:10:17.426 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:10:17.426 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:10:17.436 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:10:17.436 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:10:17.616 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37131 778
17-03-18 02:10:17.766 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:10:17.816 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:10:17.816 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:10:17.816 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:17.816 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 02:10:17.816 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:10:17.816 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:17.816 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:10:17.816 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:10:17.816 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:10:17.826 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:10:17.956 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:10:17.956 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:10:17.956 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:10:17.956 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:10:17.956 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:10:17.966 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:10:17.966 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:10:17.966 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 02:10:17.966 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:10:17.966 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 02:10:18.146 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:10:18.146 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:10:18.146 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37131 150' command took 2 ms to send, 1305 ms to get response, and 1316 ms overall
17-03-18 02:10:18.146 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:10:18.146 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.169166636924944. ------
17-03-18 02:10:18.156 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:10:18.156 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17554 mm
17-03-18 02:10:18.156 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:10:18.276 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:10:18.276 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 121 ms overall
17-03-18 02:10:18.276 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:10:18.276 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 02:10:18.276 -07 000000512 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 02:10:18.276 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 38346, sync = True, waitForSettling = False)
17-03-18 02:10:18.276 -07 000000455 INF: Z Motor: Moving to -0.175537 mm, started at -0.169167 mm, distance = -6.37 um
17-03-18 02:10:18.286 -07 000000455 INF: FPGA: Xmit ZDACW 38346\n [Z Motor]
17-03-18 02:10:18.286 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:10:18.296 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:18.296 -07 000000455 INF: FPGA: 'ZDACW 38346' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:10:18.296 -07 000000561 INF: FPGA: Recv YRDPOS 134581
17-03-18 02:10:18.306 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:10:18.306 -07 000000512 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:18.306 -07 000000512 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:10:18.306 -07 000000512 INF: Y Motor: Moving 1343 steps-19
17-03-18 02:10:18.306 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:10:18.306 -07 000000579 INF: FPGA: Recv ZDACR 38346
17-03-18 02:10:18.316 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:10:18.316 -07 000000455 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 02:10:18.316 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:10:18.356 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:10:18.356 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:10:18.356 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:18.356 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 02:10:18.356 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:10:18.356 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:18.356 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:10:18.356 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:10:18.366 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:10:18.366 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 02:10:18.476 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:10:18.476 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 02:10:18.686 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 02:10:18.686 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:10:18.736 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:18.736 -07 000000590 INF: FPGA: Recv YRDPOS 136270
17-03-18 02:10:18.746 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:10:18.746 -07 000000512 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:18.746 -07 000000512 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 02:10:18.746 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.839 mm, average velocity = 2.157 mm/sec
17-03-18 02:10:19.696 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:19.696 -07 000000424 INF: FPGA: Recv YRDPOS 136270
17-03-18 02:10:19.706 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:10:19.706 -07 000000512 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:19.726 -07 000000512 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:10:19.726 -07 000000512 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:10:19.726 -07 000000512 INF: Y Motor: Moved to 66.5381 after 1455 ms (table move)
17-03-18 02:10:19.736 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175537 mm (DAC = 38346)
17-03-18 02:10:19.736 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:19.736 -07 000000629 INF: FPGA: Recv ZSGSRD 36621
17-03-18 02:10:19.746 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:10:19.746 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:19.746 -07 000000590 INF: FPGA: Recv ZSGSRD 36617
17-03-18 02:10:19.756 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:19.756 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:19.756 -07 000000455 INF: FPGA: Recv ZSGSRD 36622
17-03-18 02:10:19.766 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:19.766 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:19.766 -07 000000626 INF: FPGA: Recv ZSGSRD 36609
17-03-18 02:10:19.776 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:19.776 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:19.776 -07 000000576 INF: FPGA: Recv ZSGSRD 36616
17-03-18 02:10:19.786 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:19.786 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:19.786 -07 000000461 INF: FPGA: Recv ZSGSRD 36617
17-03-18 02:10:19.796 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:19.796 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:19.796 -07 000000462 INF: FPGA: Recv ZSGSRD 36610
17-03-18 02:10:19.806 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:19.806 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:19.806 -07 000000561 INF: FPGA: Recv ZSGSRD 36613
17-03-18 02:10:19.816 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:19.816 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:19.816 -07 000000569 INF: FPGA: Recv ZSGSRD 36610
17-03-18 02:10:19.826 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:19.826 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:19.826 -07 000000569 INF: FPGA: Recv ZSGSRD 36618
17-03-18 02:10:19.836 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:10:19.836 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:10:19.836 -07 000000461 INF: FPGA: Recv ZPIEZORD 32790
17-03-18 02:10:19.846 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:19.846 -07 000000591 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.851 V. Piezo Error = -8.5 V.
17-03-18 02:10:19.846 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36615 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36616 (-174.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36609 (-174.6 uncal um), Max = 36622 (-174.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:10:19.846 -07 000000591 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36615, posNoise = 7, negNoise = 6
17-03-18 02:10:19.846 -07 000000591 INF: Z Motor: After move to -0.175537, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:10:19.846 -07 000000591 INF: Z Motor: Settle wait time = 1458 ms, measure time = 108 ms (allowed 150 ms), total time = 1566 ms
17-03-18 02:10:19.846 -07 000000591 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:10:19.896 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1738 ms
17-03-18 02:10:19.896 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:10:19.896 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:10:19.896 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:10:19.896 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:10:19.896 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:10:19.896 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:10:19.896 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:10:19.896 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:10:19.896 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:10:19.906 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:10:19.906 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:10:19.916 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:10:19.916 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 02:10:19.916 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:10:19.966 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:10:20.266 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:10:20.266 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:10:20.266 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:10:20.266 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:10:20.306 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:10:20.306 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 02:10:20.306 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 02:10:20.376 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:10:20.376 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:20.386 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:10:20.386 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:10:20.406 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:10:20.406 -07 000000576 INF: Autofocus start
17-03-18 02:10:20.406 -07 000000576 INF: MeasureProfile start
17-03-18 02:10:20.406 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:10:20.416 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:10:20.416 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:10:20.416 -07 000000576 INF: MeasureProfile done
17-03-18 02:10:20.416 -07 000000576 INF: X=48  Z correction [um]=0.1739867
17-03-18 02:10:20.416 -07 000000576 INF: Autofocus finished
17-03-18 02:10:20.616 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:10:20.616 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:10:20.616 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.175545879581712. ----------
17-03-18 02:10:20.616 -07 000000610 INF: Cycle	96	Tile	9	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:10:20.626 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36896, sync = True, waitForSettling = True)
17-03-18 02:10:20.626 -07 000000610 INF: Z Motor: Moving to -0.168899 mm, started at -0.175546 mm, distance = 6.65 um
17-03-18 02:10:20.626 -07 000000610 INF: FPGA: Xmit ZDACW 36896\n [Z Motor]
17-03-18 02:10:20.626 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:10:20.636 -07 000000610 INF: FPGA: 'ZDACW 36896' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:20.636 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:10:20.636 -07 000000591 INF: FPGA: Recv ZDACR 36896
17-03-18 02:10:20.646 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:20.646 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:10:20.796 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:20.796 -07 000000569 INF: FPGA: Recv ZSGSRD 35587
17-03-18 02:10:20.806 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:10:20.806 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:20.806 -07 000000626 INF: FPGA: Recv ZSGSRD 35582
17-03-18 02:10:20.816 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:20.816 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:20.816 -07 000000461 INF: FPGA: Recv ZSGSRD 35578
17-03-18 02:10:20.826 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:20.826 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:20.826 -07 000000444 INF: FPGA: Recv ZSGSRD 35577
17-03-18 02:10:20.836 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:20.836 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:20.836 -07 000000606 INF: FPGA: Recv ZSGSRD 35585
17-03-18 02:10:20.846 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:20.846 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:20.846 -07 000000569 INF: FPGA: Recv ZSGSRD 35585
17-03-18 02:10:20.856 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:20.856 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:20.856 -07 000000626 INF: FPGA: Recv ZSGSRD 35580
17-03-18 02:10:20.866 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:20.866 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:20.866 -07 000000461 INF: FPGA: Recv ZSGSRD 35580
17-03-18 02:10:20.876 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:20.876 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:20.876 -07 000000444 INF: FPGA: Recv ZSGSRD 35586
17-03-18 02:10:20.886 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:20.886 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:20.886 -07 000000606 INF: FPGA: Recv ZSGSRD 35577
17-03-18 02:10:20.896 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:20.896 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:10:20.896 -07 000000462 INF: FPGA: Recv ZPIEZORD 31403
17-03-18 02:10:20.906 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:20.906 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.630 V. Piezo Error = -9.2 V.
17-03-18 02:10:20.906 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35582 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35581 (-168.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35577 (-168.0 uncal um), Max = 35587 (-168.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:10:20.906 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35582, posNoise = 5, negNoise = 5
17-03-18 02:10:20.906 -07 000000610 INF: Z Motor: After move to -0.168899, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:10:20.906 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:10:20.906 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:10:20.906 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:10:20.906 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:10:20.906 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:10:20.906 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:10:20.906 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:10:20.906 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:10:20.906 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:10:20.906 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:10:20.906 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:10:20.906 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:10:20.906 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:10:20.916 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:10:20.916 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:10:20.916 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:10:20.916 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:10:20.926 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:10:20.926 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:10:20.926 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:10:20.926 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:10:20.926 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37073 150\n [Camera]
17-03-18 02:10:21.106 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 3.990831,
17-03-18 02:10:21.126 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:10:21.466 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:10:21.466 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:10:21.516 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:10:21.516 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:10:21.516 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:10:21.526 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:10:21.526 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:10:21.526 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:10:21.526 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:10:21.526 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:10:21.526 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:10:21.526 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:10:21.716 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37073 778
17-03-18 02:10:21.866 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:10:21.906 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:10:21.906 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:10:21.906 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:21.906 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:10:21.906 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:10:21.906 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:21.906 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:10:21.906 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:10:21.916 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:10:21.916 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:10:22.056 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:10:22.056 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:10:22.056 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:10:22.056 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:10:22.056 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:10:22.056 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:10:22.056 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:10:22.056 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:10:22.056 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:10:22.056 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-18 02:10:22.246 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:10:22.246 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:10:22.246 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37073 150' command took 2 ms to send, 1312 ms to get response, and 1316 ms overall
17-03-18 02:10:22.246 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:10:22.246 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5380859375, Z-Position -0.168909668439273. ------
17-03-18 02:10:22.246 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:10:22.246 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17570 mm
17-03-18 02:10:22.246 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:10:22.256 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:10:22.256 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38382, sync = True, waitForSettling = False)
17-03-18 02:10:22.256 -07 000000579 INF: Z Motor: Moving to -0.175702 mm, started at -0.168910 mm, distance = -6.79 um
17-03-18 02:10:22.256 -07 000000579 INF: FPGA: Xmit ZDACW 38382\n [Z Motor]
17-03-18 02:10:22.256 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 02:10:22.256 -07 000000424 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-18 02:10:22.256 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-18 02:10:22.256 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:10:22.266 -07 000000579 INF: FPGA: 'ZDACW 38382' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:10:22.266 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:10:22.276 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:22.276 -07 000000590 INF: FPGA: Recv YRDPOS 136270
17-03-18 02:10:22.286 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:10:22.286 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:10:22.286 -07 000000424 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:22.286 -07 000000424 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:10:22.286 -07 000000424 INF: Y Motor: Moving 1351 steps-30
17-03-18 02:10:22.286 -07 000000461 INF: FPGA: Recv ZDACR 38382
17-03-18 02:10:22.296 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:10:22.296 -07 000000579 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 02:10:22.296 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:10:22.446 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 02:10:22.446 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:10:22.446 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:22.456 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:10:22.456 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:10:22.456 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:10:22.456 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:22.456 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:10:22.456 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:10:22.456 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:10:22.466 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:10:22.466 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 208 ms overall
17-03-18 02:10:22.666 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 02:10:22.666 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-18 02:10:22.716 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:22.716 -07 000000591 INF: FPGA: Recv YRDPOS 137976
17-03-18 02:10:22.726 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:10:22.726 -07 000000424 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:22.726 -07 000000424 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 02:10:22.726 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.845 mm, average velocity = 2.177 mm/sec
17-03-18 02:10:23.676 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:23.676 -07 000000591 INF: FPGA: Recv YRDPOS 137977
17-03-18 02:10:23.686 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:10:23.686 -07 000000424 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:23.706 -07 000000424 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:10:23.706 -07 000000424 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:10:23.706 -07 000000424 INF: Y Motor: Moved to 67.3716 after 1456 ms (table move)
17-03-18 02:10:23.716 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175702 mm (DAC = 38382)
17-03-18 02:10:23.716 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:23.716 -07 000000606 INF: FPGA: Recv ZSGSRD 36638
17-03-18 02:10:23.726 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:10:23.726 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:23.726 -07 000000591 INF: FPGA: Recv ZSGSRD 36638
17-03-18 02:10:23.736 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:23.736 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:23.736 -07 000000561 INF: FPGA: Recv ZSGSRD 36648
17-03-18 02:10:23.746 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:23.746 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:23.746 -07 000000512 INF: FPGA: Recv ZSGSRD 36641
17-03-18 02:10:23.756 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:23.756 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:23.756 -07 000000590 INF: FPGA: Recv ZSGSRD 36634
17-03-18 02:10:23.766 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:23.766 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:23.766 -07 000000467 INF: FPGA: Recv ZSGSRD 36638
17-03-18 02:10:23.776 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:23.776 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:23.776 -07 000000561 INF: FPGA: Recv ZSGSRD 36637
17-03-18 02:10:23.786 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:23.786 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:23.786 -07 000000626 INF: FPGA: Recv ZSGSRD 36644
17-03-18 02:10:23.796 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:23.796 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:23.796 -07 000000569 INF: FPGA: Recv ZSGSRD 36641
17-03-18 02:10:23.806 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:23.806 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:23.806 -07 000000579 INF: FPGA: Recv ZSGSRD 36641
17-03-18 02:10:23.816 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:23.816 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:10:23.816 -07 000000430 INF: FPGA: Recv ZPIEZORD 32828
17-03-18 02:10:23.826 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:23.826 -07 000000576 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.857 V. Piezo Error = -8.4 V.
17-03-18 02:10:23.826 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36640 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36640 (-174.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36634 (-174.8 uncal um), Max = 36648 (-174.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:10:23.826 -07 000000576 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36640, posNoise = 8, negNoise = 6
17-03-18 02:10:23.826 -07 000000576 INF: Z Motor: After move to -0.175702, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:10:23.826 -07 000000576 INF: Z Motor: Settle wait time = 1460 ms, measure time = 108 ms (allowed 150 ms), total time = 1568 ms
17-03-18 02:10:23.826 -07 000000576 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:10:23.876 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 02:10:23.876 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:10:23.876 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:10:23.876 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:10:23.876 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:10:23.876 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:10:23.876 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:10:23.876 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:10:23.876 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:10:23.876 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:10:23.886 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:10:23.886 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:10:23.886 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:10:23.886 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:10:23.896 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:10:23.936 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:10:24.236 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:10:24.236 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:10:24.236 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:10:24.236 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 02:10:24.276 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:10:24.276 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 02:10:24.276 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:10:24.356 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:10:24.366 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:24.366 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:10:24.366 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 02:10:24.376 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:10:24.376 -07 000000579 INF: Autofocus start
17-03-18 02:10:24.376 -07 000000579 INF: MeasureProfile start
17-03-18 02:10:24.376 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:10:24.386 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:10:24.386 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:10:24.386 -07 000000579 INF: MeasureProfile done
17-03-18 02:10:24.386 -07 000000579 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:10:24.386 -07 000000579 INF: Autofocus finished
17-03-18 02:10:24.586 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:10:24.586 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:10:24.586 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.175706484885256. ----------
17-03-18 02:10:24.586 -07 000000610 INF: Cycle	96	Tile	10	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:10:24.596 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36879, sync = True, waitForSettling = True)
17-03-18 02:10:24.596 -07 000000610 INF: Z Motor: Moving to -0.168821 mm, started at -0.175706 mm, distance = 6.89 um
17-03-18 02:10:24.596 -07 000000610 INF: FPGA: Xmit ZDACW 36879\n [Z Motor]
17-03-18 02:10:24.596 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:10:24.606 -07 000000610 INF: FPGA: 'ZDACW 36879' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:24.606 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:10:24.606 -07 000000430 INF: FPGA: Recv ZDACR 36879
17-03-18 02:10:24.616 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:24.616 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:10:24.766 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:24.766 -07 000000444 INF: FPGA: Recv ZSGSRD 35568
17-03-18 02:10:24.776 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:10:24.776 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:24.776 -07 000000467 INF: FPGA: Recv ZSGSRD 35574
17-03-18 02:10:24.786 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:24.786 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:24.786 -07 000000502 INF: FPGA: Recv ZSGSRD 35566
17-03-18 02:10:24.796 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:24.796 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:24.796 -07 000000626 INF: FPGA: Recv ZSGSRD 35573
17-03-18 02:10:24.806 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:24.806 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:24.806 -07 000000591 INF: FPGA: Recv ZSGSRD 35572
17-03-18 02:10:24.816 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:24.816 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:24.816 -07 000000462 INF: FPGA: Recv ZSGSRD 35565
17-03-18 02:10:24.826 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:24.826 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:24.826 -07 000000579 INF: FPGA: Recv ZSGSRD 35574
17-03-18 02:10:24.836 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:24.836 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:24.836 -07 000000629 INF: FPGA: Recv ZSGSRD 35567
17-03-18 02:10:24.846 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:24.846 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:24.846 -07 000000461 INF: FPGA: Recv ZSGSRD 35575
17-03-18 02:10:24.856 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:24.856 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:24.856 -07 000000430 INF: FPGA: Recv ZSGSRD 35564
17-03-18 02:10:24.866 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:24.866 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:10:24.866 -07 000000576 INF: FPGA: Recv ZPIEZORD 31379
17-03-18 02:10:24.876 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:24.876 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.627 V. Piezo Error = -9.2 V.
17-03-18 02:10:24.876 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35570 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35570 (-168.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35564 (-167.9 uncal um), Max = 35575 (-168.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:10:24.876 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35570, posNoise = 5, negNoise = 6
17-03-18 02:10:24.876 -07 000000610 INF: Z Motor: After move to -0.168821, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:10:24.876 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:10:24.876 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:10:24.876 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:10:24.876 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:10:24.876 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:10:24.876 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:10:24.876 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:10:24.876 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:10:24.876 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:10:24.876 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:10:24.876 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:10:24.876 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:10:24.876 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:10:24.876 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:10:24.876 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:10:24.876 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:10:24.876 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:10:24.886 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:10:24.886 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 02:10:24.886 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:10:24.886 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:10:24.896 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37056 150\n [Camera]
17-03-18 02:10:25.096 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:10:25.486 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:10:25.486 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:10:25.486 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:10:25.486 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:10:25.486 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:10:25.486 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:10:25.486 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:10:25.486 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:10:25.486 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:10:25.486 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:10:25.676 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37056 778
17-03-18 02:10:25.826 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:10:25.866 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:10:25.866 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:10:25.866 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:25.866 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 02:10:25.866 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:10:25.866 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:25.866 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:10:25.876 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:10:25.876 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:10:25.876 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:10:26.016 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:10:26.016 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:10:26.016 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:10:26.016 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:10:26.016 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:10:26.026 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:10:26.026 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:10:26.026 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:10:26.026 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:10:26.026 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:10:26.276 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:10:26.276 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:10:26.276 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37056 150' command took 2 ms to send, 1375 ms to get response, and 1383 ms overall
17-03-18 02:10:26.276 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:10:26.276 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.168832577893572. ------
17-03-18 02:10:26.286 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:10:26.286 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17509 mm
17-03-18 02:10:26.286 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:10:26.286 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:10:26.286 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 02:10:26.286 -07 000000591 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 02:10:26.286 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 38249, sync = True, waitForSettling = False)
17-03-18 02:10:26.286 -07 000000430 INF: Z Motor: Moving to -0.175093 mm, started at -0.168833 mm, distance = -6.26 um
17-03-18 02:10:26.296 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:26.296 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:26.296 -07 000000590 INF: FPGA: Recv YRDPOS 137977
17-03-18 02:10:26.306 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:10:26.306 -07 000000591 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:26.306 -07 000000591 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:10:26.306 -07 000000591 INF: Y Motor: Moving 1346 steps-24
17-03-18 02:10:26.306 -07 000000430 INF: FPGA: Xmit ZDACW 38249\n [Z Motor]
17-03-18 02:10:26.306 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:10:26.316 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:10:26.316 -07 000000430 INF: FPGA: 'ZDACW 38249' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:10:26.326 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:10:26.336 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:10:26.336 -07 000000462 INF: FPGA: Recv ZDACR 38249
17-03-18 02:10:26.346 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:10:26.346 -07 000000430 INF: Z Motor: MoveAbsStepped took 57 ms (did NOT wait for settling yet))
17-03-18 02:10:26.416 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 02:10:26.416 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:10:26.416 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:26.416 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 02:10:26.416 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:10:26.416 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:26.426 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:10:26.426 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:10:26.426 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 02:10:26.436 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 02:10:26.466 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 3.98264,
17-03-18 02:10:26.466 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:10:26.466 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:10:26.516 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:10:26.516 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:10:26.696 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 02:10:26.696 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:10:26.746 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:26.746 -07 000000606 INF: FPGA: Recv YRDPOS 139683
17-03-18 02:10:26.756 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:10:26.756 -07 000000591 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:26.756 -07 000000591 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 02:10:26.756 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.841 mm, average velocity = 2.113 mm/sec
17-03-18 02:10:27.706 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:27.706 -07 000000626 INF: FPGA: Recv YRDPOS 139683
17-03-18 02:10:27.716 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:10:27.716 -07 000000591 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:27.736 -07 000000591 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:10:27.736 -07 000000591 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:10:27.736 -07 000000591 INF: Y Motor: Moved to 68.2046 after 1452 ms (table move)
17-03-18 02:10:27.746 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175093 mm (DAC = 38249)
17-03-18 02:10:27.746 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:27.746 -07 000000455 INF: FPGA: Recv ZSGSRD 36549
17-03-18 02:10:27.756 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:27.756 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:27.756 -07 000000502 INF: FPGA: Recv ZSGSRD 36550
17-03-18 02:10:27.766 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:27.766 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:27.766 -07 000000569 INF: FPGA: Recv ZSGSRD 36543
17-03-18 02:10:27.776 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:27.776 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:27.776 -07 000000444 INF: FPGA: Recv ZSGSRD 36551
17-03-18 02:10:27.786 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:27.786 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:27.786 -07 000000576 INF: FPGA: Recv ZSGSRD 36541
17-03-18 02:10:27.796 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:27.796 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:27.796 -07 000000430 INF: FPGA: Recv ZSGSRD 36543
17-03-18 02:10:27.806 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:27.806 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:27.806 -07 000000591 INF: FPGA: Recv ZSGSRD 36546
17-03-18 02:10:27.816 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:27.816 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:27.816 -07 000000444 INF: FPGA: Recv ZSGSRD 36550
17-03-18 02:10:27.826 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:27.826 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:27.826 -07 000000576 INF: FPGA: Recv ZSGSRD 36552
17-03-18 02:10:27.836 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:27.836 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:27.836 -07 000000569 INF: FPGA: Recv ZSGSRD 36553
17-03-18 02:10:27.846 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:27.846 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:10:27.846 -07 000000467 INF: FPGA: Recv ZPIEZORD 32663
17-03-18 02:10:27.856 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:27.856 -07 000000579 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.836 V. Piezo Error = -8.6 V.
17-03-18 02:10:27.856 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.1 um, Read 10 ADC samples: Avg = 36548 (-174.2 uncal um), Error = 0.9 uncal um, Median = 36550 (-174.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36541 (-174.2 uncal um), Max = 36553 (-174.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:10:27.856 -07 000000579 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36548, posNoise = 5, negNoise = 7
17-03-18 02:10:27.856 -07 000000579 INF: Z Motor: After move to -0.175093, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:10:27.856 -07 000000579 INF: Z Motor: Settle wait time = 1456 ms, measure time = 110 ms (allowed 150 ms), total time = 1566 ms
17-03-18 02:10:27.856 -07 000000579 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:10:27.896 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-18 02:10:27.896 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:10:27.896 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:10:27.896 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:10:27.896 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:10:27.896 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:10:27.896 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:10:27.896 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:10:27.896 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:10:27.896 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:10:27.906 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 02:10:27.906 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:10:27.916 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:10:27.916 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 02:10:27.916 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:10:27.966 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:10:28.266 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:10:28.266 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:10:28.266 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:10:28.266 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:10:28.306 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:10:28.306 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 02:10:28.306 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 02:10:28.376 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:10:28.386 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:28.386 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:10:28.386 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:10:28.406 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:10:28.406 -07 000000424 INF: Autofocus start
17-03-18 02:10:28.406 -07 000000424 INF: MeasureProfile start
17-03-18 02:10:28.406 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:10:28.416 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:10:28.416 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:10:28.416 -07 000000424 INF: MeasureProfile done
17-03-18 02:10:28.416 -07 000000424 INF: X=-64  Z correction [um]=-0.4038377
17-03-18 02:10:28.416 -07 000000424 INF: Autofocus finished
17-03-18 02:10:28.616 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:10:28.616 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:10:28.626 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.175115457368214. ----------
17-03-18 02:10:28.626 -07 000000610 INF: Cycle	96	Tile	11	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:10:28.626 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36673, sync = True, waitForSettling = True)
17-03-18 02:10:28.626 -07 000000610 INF: Z Motor: Moving to -0.167878 mm, started at -0.175115 mm, distance = 7.24 um
17-03-18 02:10:28.626 -07 000000610 INF: FPGA: Xmit ZDACW 36673\n [Z Motor]
17-03-18 02:10:28.636 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:10:28.636 -07 000000610 INF: FPGA: 'ZDACW 36673' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 02:10:28.636 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:10:28.636 -07 000000579 INF: FPGA: Recv ZDACR 36673
17-03-18 02:10:28.646 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:10:28.646 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:10:28.796 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:28.796 -07 000000629 INF: FPGA: Recv ZSGSRD 35425
17-03-18 02:10:28.806 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:10:28.806 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:28.806 -07 000000626 INF: FPGA: Recv ZSGSRD 35421
17-03-18 02:10:28.816 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:28.816 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:28.816 -07 000000576 INF: FPGA: Recv ZSGSRD 35423
17-03-18 02:10:28.826 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:28.826 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:28.826 -07 000000461 INF: FPGA: Recv ZSGSRD 35422
17-03-18 02:10:28.836 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:28.836 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:28.836 -07 000000591 INF: FPGA: Recv ZSGSRD 35424
17-03-18 02:10:28.846 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:28.846 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:28.846 -07 000000629 INF: FPGA: Recv ZSGSRD 35424
17-03-18 02:10:28.856 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:28.856 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:28.856 -07 000000512 INF: FPGA: Recv ZSGSRD 35419
17-03-18 02:10:28.866 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:28.866 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:28.866 -07 000000462 INF: FPGA: Recv ZSGSRD 35425
17-03-18 02:10:28.876 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:28.876 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:28.876 -07 000000424 INF: FPGA: Recv ZSGSRD 35426
17-03-18 02:10:28.886 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:28.886 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:28.886 -07 000000579 INF: FPGA: Recv ZSGSRD 35424
17-03-18 02:10:28.896 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:28.896 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:10:28.896 -07 000000629 INF: FPGA: Recv ZPIEZORD 31207
17-03-18 02:10:28.906 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:28.906 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.596 V. Piezo Error = -9.3 V.
17-03-18 02:10:28.906 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35423 (-167.0 uncal um), Error = 0.9 uncal um, Median = 35424 (-167.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35419 (-167.0 uncal um), Max = 35426 (-167.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:10:28.906 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35423, posNoise = 3, negNoise = 4
17-03-18 02:10:28.906 -07 000000610 INF: Z Motor: After move to -0.167878, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:10:28.906 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-18 02:10:28.906 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:10:28.906 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:10:28.906 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:10:28.906 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:10:28.906 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:10:28.906 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:10:28.906 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:10:28.906 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:10:28.906 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:10:28.906 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:10:28.906 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:10:28.906 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:10:28.916 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:10:28.916 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:10:28.916 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:10:28.916 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:10:28.926 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:10:28.926 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:10:28.926 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:10:28.926 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:10:28.926 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36850 150\n [Camera]
17-03-18 02:10:29.126 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:10:29.516 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:10:29.516 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:10:29.526 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:10:29.526 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:10:29.526 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:10:29.526 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:10:29.526 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:10:29.526 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:10:29.526 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:10:29.526 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:10:29.706 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36850 778
17-03-18 02:10:29.866 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:10:29.896 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 02:10:29.896 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 02:10:29.896 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:29.906 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 02:10:29.906 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 02:10:29.906 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:29.906 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:10:29.906 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:10:29.906 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:10:29.906 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:10:30.046 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:10:30.046 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:10:30.046 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:10:30.056 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:10:30.056 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:10:30.056 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:10:30.066 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:10:30.066 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:10:30.066 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:10:30.066 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:10:30.236 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:10:30.246 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:10:30.246 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36850 150' command took 2 ms to send, 1310 ms to get response, and 1316 ms overall
17-03-18 02:10:30.246 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:10:30.246 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.167888218708733. ------
17-03-18 02:10:30.246 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:10:30.246 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17457 mm
17-03-18 02:10:30.366 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:10:30.366 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:10:30.366 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 118 ms overall
17-03-18 02:10:30.366 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:10:30.366 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 02:10:30.366 -07 000000606 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 02:10:30.366 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38135, sync = True, waitForSettling = False)
17-03-18 02:10:30.366 -07 000000512 INF: Z Motor: Moving to -0.174571 mm, started at -0.167888 mm, distance = -6.68 um
17-03-18 02:10:30.376 -07 000000512 INF: FPGA: Xmit ZDACW 38135\n [Z Motor]
17-03-18 02:10:30.376 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:10:30.386 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:30.386 -07 000000512 INF: FPGA: 'ZDACW 38135' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:10:30.386 -07 000000424 INF: FPGA: Recv YRDPOS 139683
17-03-18 02:10:30.396 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:10:30.396 -07 000000606 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:30.396 -07 000000606 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:10:30.396 -07 000000606 INF: Y Motor: Moving 1341 steps-16
17-03-18 02:10:30.396 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:10:30.396 -07 000000576 INF: FPGA: Recv ZDACR 38135
17-03-18 02:10:30.406 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:10:30.406 -07 000000512 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-18 02:10:30.406 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:10:30.446 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 02:10:30.446 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:10:30.446 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:30.456 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 02:10:30.456 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:10:30.456 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:30.456 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:10:30.456 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:10:30.456 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:10:30.466 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 02:10:30.566 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:10:30.566 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 02:10:30.776 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 02:10:30.776 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:10:30.826 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:30.826 -07 000000569 INF: FPGA: Recv YRDPOS 141366
17-03-18 02:10:30.836 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:10:30.836 -07 000000606 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:30.836 -07 000000606 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 02:10:30.836 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.160 mm/sec
17-03-18 02:10:31.466 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:10:31.466 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:10:31.786 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:31.786 -07 000000502 INF: FPGA: Recv YRDPOS 141366
17-03-18 02:10:31.796 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:10:31.796 -07 000000606 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:31.816 -07 000000606 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:10:31.816 -07 000000606 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:10:31.816 -07 000000606 INF: Y Motor: Moved to 69.0264 after 1451 ms (table move)
17-03-18 02:10:31.826 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 3.999021,
17-03-18 02:10:31.826 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174571 mm (DAC = 38135)
17-03-18 02:10:31.846 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:31.846 -07 000000561 INF: FPGA: Recv ZSGSRD 36465
17-03-18 02:10:31.856 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:10:31.876 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:31.876 -07 000000462 INF: FPGA: Recv ZSGSRD 36460
17-03-18 02:10:31.886 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:10:31.886 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:31.886 -07 000000591 INF: FPGA: Recv ZSGSRD 36462
17-03-18 02:10:31.896 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:31.896 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:31.896 -07 000000579 INF: FPGA: Recv ZSGSRD 36470
17-03-18 02:10:31.906 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:31.906 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:31.906 -07 000000576 INF: FPGA: Recv ZSGSRD 36466
17-03-18 02:10:31.916 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:31.916 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:31.916 -07 000000444 INF: FPGA: Recv ZSGSRD 36472
17-03-18 02:10:31.926 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:31.926 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:31.926 -07 000000606 INF: FPGA: Recv ZSGSRD 36464
17-03-18 02:10:31.936 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:31.936 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:31.936 -07 000000502 INF: FPGA: Recv ZSGSRD 36461
17-03-18 02:10:31.946 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:31.946 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:31.946 -07 000000576 INF: FPGA: Recv ZSGSRD 36468
17-03-18 02:10:31.956 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:31.956 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:31.956 -07 000000629 INF: FPGA: Recv ZSGSRD 36463
17-03-18 02:10:31.966 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:31.966 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:10:31.966 -07 000000430 INF: FPGA: Recv ZPIEZORD 32593
17-03-18 02:10:31.976 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:31.976 -07 000000461 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.819 V. Piezo Error = -8.6 V.
17-03-18 02:10:31.976 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.6 um, Read 10 ADC samples: Avg = 36465 (-173.7 uncal um), Error = 0.9 uncal um, Median = 36464 (-173.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36460 (-173.7 uncal um), Max = 36472 (-173.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:10:31.976 -07 000000461 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36465, posNoise = 7, negNoise = 5
17-03-18 02:10:31.976 -07 000000461 INF: Z Motor: After move to -0.174571, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:10:31.976 -07 000000461 INF: Z Motor: Settle wait time = 1456 ms, measure time = 146 ms (allowed 150 ms), total time = 1602 ms
17-03-18 02:10:31.976 -07 000000461 INF: Z Motor: Waiting extra 4 ms after reading position to reach expected total of 150 ms
17-03-18 02:10:31.986 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1734 ms
17-03-18 02:10:31.986 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:10:31.986 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:10:31.986 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:10:31.986 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:10:31.986 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:10:31.986 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:10:31.986 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:10:31.996 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:10:31.996 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:10:31.996 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:10:31.996 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:10:32.006 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:10:32.006 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 02:10:32.006 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:10:32.056 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 02:10:32.356 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 02:10:32.356 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 02:10:32.356 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:10:32.366 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:10:32.396 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:10:32.396 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 02:10:32.396 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 02:10:32.476 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 02:10:32.476 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:32.486 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:10:32.486 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 02:10:32.496 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:10:32.496 -07 000000467 INF: Autofocus start
17-03-18 02:10:32.496 -07 000000467 INF: MeasureProfile start
17-03-18 02:10:32.496 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:10:32.506 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:10:32.506 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:10:32.516 -07 000000467 INF: MeasureProfile done
17-03-18 02:10:32.516 -07 000000467 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:10:32.516 -07 000000467 INF: Autofocus finished
17-03-18 02:10:32.706 -07 000000430 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:10:32.706 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:10:32.706 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.174582247760448. ----------
17-03-18 02:10:32.706 -07 000000610 INF: Cycle	96	Tile	12	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:10:32.716 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36650, sync = True, waitForSettling = True)
17-03-18 02:10:32.716 -07 000000610 INF: Z Motor: Moving to -0.167773 mm, started at -0.174582 mm, distance = 6.81 um
17-03-18 02:10:32.716 -07 000000610 INF: FPGA: Xmit ZDACW 36650\n [Z Motor]
17-03-18 02:10:32.716 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:10:32.726 -07 000000610 INF: FPGA: 'ZDACW 36650' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:10:32.726 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:10:32.726 -07 000000467 INF: FPGA: Recv ZDACR 36650
17-03-18 02:10:32.736 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:32.736 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:10:32.886 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:32.886 -07 000000569 INF: FPGA: Recv ZSGSRD 35406
17-03-18 02:10:32.896 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:10:32.896 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:32.896 -07 000000591 INF: FPGA: Recv ZSGSRD 35407
17-03-18 02:10:32.906 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:32.906 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:32.906 -07 000000424 INF: FPGA: Recv ZSGSRD 35404
17-03-18 02:10:32.916 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:32.916 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:32.916 -07 000000561 INF: FPGA: Recv ZSGSRD 35408
17-03-18 02:10:32.926 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:32.926 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:32.926 -07 000000467 INF: FPGA: Recv ZSGSRD 35409
17-03-18 02:10:32.936 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:32.936 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:32.936 -07 000000576 INF: FPGA: Recv ZSGSRD 35411
17-03-18 02:10:32.946 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:32.946 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:32.946 -07 000000591 INF: FPGA: Recv ZSGSRD 35408
17-03-18 02:10:32.956 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:32.956 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:32.956 -07 000000512 INF: FPGA: Recv ZSGSRD 35405
17-03-18 02:10:32.966 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:32.966 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:32.966 -07 000000629 INF: FPGA: Recv ZSGSRD 35407
17-03-18 02:10:32.976 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:32.976 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:32.976 -07 000000455 INF: FPGA: Recv ZSGSRD 35409
17-03-18 02:10:32.986 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:32.986 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:10:32.986 -07 000000626 INF: FPGA: Recv ZPIEZORD 31201
17-03-18 02:10:32.996 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:32.996 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.592 V. Piezo Error = -9.3 V.
17-03-18 02:10:32.996 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35407 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35408 (-166.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35404 (-166.9 uncal um), Max = 35411 (-166.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:10:32.996 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35407, posNoise = 4, negNoise = 3
17-03-18 02:10:32.996 -07 000000610 INF: Z Motor: After move to -0.167773, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:10:32.996 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:10:32.996 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:10:32.996 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:10:32.996 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:10:32.996 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:10:32.996 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:10:32.996 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:10:32.996 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:10:32.996 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:10:32.996 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:10:32.996 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:10:32.996 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:10:32.996 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:10:33.006 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:10:33.006 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:10:33.006 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:10:33.006 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:10:33.016 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 02:10:33.016 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:10:33.016 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 02:10:33.016 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:10:33.016 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36827 150\n [Camera]
17-03-18 02:10:33.216 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:10:33.616 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:10:33.616 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:10:33.616 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:10:33.616 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:10:33.616 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:10:33.616 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:10:33.616 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:10:33.616 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:10:33.616 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:10:33.616 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:10:33.806 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36827 778
17-03-18 02:10:33.956 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:10:33.996 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:10:33.996 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:10:33.996 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:33.996 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 02:10:33.996 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 02:10:33.996 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:33.996 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:10:33.996 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:10:33.996 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:10:34.006 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:10:34.146 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:10:34.146 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:10:34.146 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:10:34.146 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:10:34.146 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:10:34.146 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:10:34.146 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:10:34.146 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:10:34.146 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:10:34.146 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 02:10:34.336 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:10:34.336 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:10:34.336 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36827 150' command took 2 ms to send, 1314 ms to get response, and 1317 ms overall
17-03-18 02:10:34.336 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:10:34.336 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.167785431314465. ------
17-03-18 02:10:34.336 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:10:34.336 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17414 mm
17-03-18 02:10:34.336 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:10:34.346 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 02:10:34.346 -07 000000576 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 02:10:34.346 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:34.346 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:10:34.346 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 02:10:34.346 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38041, sync = True, waitForSettling = False)
17-03-18 02:10:34.346 -07 000000569 INF: Z Motor: Moving to -0.174141 mm, started at -0.167785 mm, distance = -6.36 um
17-03-18 02:10:34.346 -07 000000591 INF: FPGA: Recv YRDPOS 141367
17-03-18 02:10:34.356 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:10:34.356 -07 000000576 INF: FPGA: 'YRDPOS' command took 2 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:10:34.356 -07 000000576 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:34.356 -07 000000576 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:10:34.356 -07 000000576 INF: Y Motor: Moving 1353 steps-33
17-03-18 02:10:34.366 -07 000000569 INF: FPGA: Xmit ZDACW 38041\n [Z Motor]
17-03-18 02:10:34.366 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:10:34.376 -07 000000569 INF: FPGA: 'ZDACW 38041' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:10:34.376 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:10:34.386 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:10:34.386 -07 000000455 INF: FPGA: Recv ZDACR 38041
17-03-18 02:10:34.396 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:10:34.396 -07 000000569 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 02:10:34.546 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 02:10:34.546 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:10:34.546 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:34.546 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:10:34.546 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:10:34.546 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:34.556 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:10:34.556 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:10:34.556 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 02:10:34.556 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:10:34.556 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 211 ms overall
17-03-18 02:10:34.556 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:10:34.746 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 02:10:34.746 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 02:10:34.796 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:34.796 -07 000000569 INF: FPGA: Recv YRDPOS 143078
17-03-18 02:10:34.806 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:10:34.806 -07 000000576 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:34.806 -07 000000576 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 02:10:34.806 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.846 mm, average velocity = 2.148 mm/sec
17-03-18 02:10:35.756 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:35.756 -07 000000629 INF: FPGA: Recv YRDPOS 143078
17-03-18 02:10:35.766 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:35.766 -07 000000576 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:35.786 -07 000000576 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:10:35.786 -07 000000576 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:10:35.786 -07 000000576 INF: Y Motor: Moved to 69.8623 after 1447 ms (table move)
17-03-18 02:10:35.796 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174141 mm (DAC = 38041)
17-03-18 02:10:35.796 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:35.796 -07 000000512 INF: FPGA: Recv ZSGSRD 36402
17-03-18 02:10:35.806 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:10:35.806 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:35.806 -07 000000629 INF: FPGA: Recv ZSGSRD 36394
17-03-18 02:10:35.816 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:35.816 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:35.816 -07 000000626 INF: FPGA: Recv ZSGSRD 36398
17-03-18 02:10:35.826 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:35.826 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:35.826 -07 000000444 INF: FPGA: Recv ZSGSRD 36404
17-03-18 02:10:35.836 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:35.836 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:35.836 -07 000000561 INF: FPGA: Recv ZSGSRD 36395
17-03-18 02:10:35.846 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:35.846 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:35.846 -07 000000591 INF: FPGA: Recv ZSGSRD 36400
17-03-18 02:10:35.856 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:35.856 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:35.856 -07 000000606 INF: FPGA: Recv ZSGSRD 36400
17-03-18 02:10:35.866 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:35.866 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:35.866 -07 000000444 INF: FPGA: Recv ZSGSRD 36395
17-03-18 02:10:35.876 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:35.876 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:35.876 -07 000000579 INF: FPGA: Recv ZSGSRD 36396
17-03-18 02:10:35.886 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:35.886 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:35.886 -07 000000430 INF: FPGA: Recv ZSGSRD 36402
17-03-18 02:10:35.896 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:35.896 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:10:35.896 -07 000000424 INF: FPGA: Recv ZPIEZORD 32492
17-03-18 02:10:35.906 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:35.906 -07 000000502 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.805 V. Piezo Error = -8.6 V.
17-03-18 02:10:35.906 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.1 um, Read 10 ADC samples: Avg = 36399 (-173.3 uncal um), Error = 0.9 uncal um, Median = 36399 (-173.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36394 (-173.2 uncal um), Max = 36404 (-173.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:10:35.906 -07 000000502 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36399, posNoise = 5, negNoise = 5
17-03-18 02:10:35.906 -07 000000502 INF: Z Motor: After move to -0.174141, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:10:35.906 -07 000000502 INF: Z Motor: Settle wait time = 1446 ms, measure time = 111 ms (allowed 150 ms), total time = 1557 ms
17-03-18 02:10:35.906 -07 000000502 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 02:10:35.946 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-18 02:10:35.946 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:10:35.946 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:10:35.946 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:10:35.946 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:10:35.946 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:10:35.946 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:10:35.946 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:10:35.946 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:10:35.946 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:10:35.946 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:10:35.946 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:10:35.966 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:10:35.966 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:10:35.966 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:10:36.016 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:10:36.316 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:10:36.316 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:10:36.316 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:10:36.316 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) start.
17-03-18 02:10:36.346 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:10:36.356 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 02:10:36.356 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:10:36.436 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 02:10:36.436 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:36.436 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:10:36.436 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 02:10:36.456 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:10:36.456 -07 000000455 INF: Autofocus start
17-03-18 02:10:36.456 -07 000000455 INF: MeasureProfile start
17-03-18 02:10:36.456 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:10:36.466 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:10:36.466 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:10:36.466 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:10:36.466 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:10:36.466 -07 000000455 INF: MeasureProfile done
17-03-18 02:10:36.466 -07 000000455 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:10:36.466 -07 000000455 INF: Autofocus finished
17-03-18 02:10:36.666 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:10:36.666 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:10:36.666 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.174158249759092. ----------
17-03-18 02:10:36.666 -07 000000610 INF: Cycle	96	Tile	13	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:10:36.676 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36555, sync = True, waitForSettling = True)
17-03-18 02:10:36.676 -07 000000610 INF: Z Motor: Moving to -0.167338 mm, started at -0.174158 mm, distance = 6.82 um
17-03-18 02:10:36.676 -07 000000610 INF: FPGA: Xmit ZDACW 36555\n [Z Motor]
17-03-18 02:10:36.676 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:10:36.686 -07 000000610 INF: FPGA: 'ZDACW 36555' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:36.686 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:10:36.686 -07 000000502 INF: FPGA: Recv ZDACR 36555
17-03-18 02:10:36.696 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:36.696 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:10:36.846 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:36.846 -07 000000455 INF: FPGA: Recv ZSGSRD 35337
17-03-18 02:10:36.856 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:10:36.856 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:36.856 -07 000000502 INF: FPGA: Recv ZSGSRD 35329
17-03-18 02:10:36.866 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:36.866 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:36.866 -07 000000561 INF: FPGA: Recv ZSGSRD 35336
17-03-18 02:10:36.876 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:36.886 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:36.886 -07 000000455 INF: FPGA: Recv ZSGSRD 35345
17-03-18 02:10:36.896 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:10:36.896 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:36.896 -07 000000462 INF: FPGA: Recv ZSGSRD 35338
17-03-18 02:10:36.906 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:36.906 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:36.906 -07 000000561 INF: FPGA: Recv ZSGSRD 35342
17-03-18 02:10:36.916 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:36.916 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:36.916 -07 000000590 INF: FPGA: Recv ZSGSRD 35335
17-03-18 02:10:36.926 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:36.926 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:36.926 -07 000000629 INF: FPGA: Recv ZSGSRD 35340
17-03-18 02:10:36.936 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:36.936 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:36.936 -07 000000579 INF: FPGA: Recv ZSGSRD 35335
17-03-18 02:10:36.946 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:36.946 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:36.946 -07 000000462 INF: FPGA: Recv ZSGSRD 35336
17-03-18 02:10:36.956 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:36.956 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:10:36.956 -07 000000502 INF: FPGA: Recv ZPIEZORD 31064
17-03-18 02:10:36.966 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:36.966 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.578 V. Piezo Error = -9.4 V.
17-03-18 02:10:36.966 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35337 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35336 (-166.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35329 (-166.4 uncal um), Max = 35345 (-166.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:10:36.966 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35337, posNoise = 8, negNoise = 8
17-03-18 02:10:36.966 -07 000000610 INF: Z Motor: After move to -0.167338, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:10:36.966 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 02:10:36.966 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:10:36.966 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:10:36.966 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:10:36.966 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:10:36.966 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:10:36.966 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:10:36.966 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:10:36.966 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:10:36.966 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:10:36.966 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:10:36.966 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:10:36.966 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:10:36.966 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:10:36.966 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:10:36.976 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-18 02:10:36.976 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:10:36.976 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:10:36.976 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:10:36.985 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:10:36.985 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:10:36.985 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36732 150\n [Camera]
17-03-18 02:10:37.185 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 02:10:37.195 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 4.003063,
17-03-18 02:10:37.575 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:10:37.575 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:10:37.575 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:10:37.575 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:10:37.575 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:10:37.585 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:10:37.585 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:10:37.585 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:10:37.585 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:10:37.585 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:10:37.775 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36732 778
17-03-18 02:10:37.915 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:10:37.955 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 02:10:37.955 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:10:37.955 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:10:37.955 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:37.955 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:10:37.955 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:37.965 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:10:37.965 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:10:37.965 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:10:37.975 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:10:38.105 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:10:38.105 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:10:38.115 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:10:38.115 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:10:38.115 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:10:38.115 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:10:38.115 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:10:38.115 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:10:38.115 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:10:38.115 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:10:38.305 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:10:38.305 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:10:38.305 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36732 150' command took 2 ms to send, 1311 ms to get response, and 1316 ms overall
17-03-18 02:10:38.305 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:10:38.305 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8623046875, Z-Position -0.167335736464542. ------
17-03-18 02:10:38.305 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:10:38.305 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17378 mm
17-03-18 02:10:38.305 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:10:38.315 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:10:38.315 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:10:38.315 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 02:10:38.315 -07 000000467 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-18 02:10:38.315 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:38.315 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 37963, sync = True, waitForSettling = False)
17-03-18 02:10:38.315 -07 000000424 INF: Z Motor: Moving to -0.173783 mm, started at -0.167336 mm, distance = -6.45 um
17-03-18 02:10:38.435 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:10:38.435 -07 000000461 INF: FPGA: Recv YRDPOS 143079
17-03-18 02:10:38.435 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 124 ms overall
17-03-18 02:10:38.435 -07 000000467 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:38.435 -07 000000467 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:10:38.435 -07 000000467 INF: Y Motor: Moving 1344 steps-21
17-03-18 02:10:38.445 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:10:38.455 -07 000000424 INF: FPGA: Xmit ZDACW 37963\n [Z Motor]
17-03-18 02:10:38.455 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:10:38.465 -07 000000424 INF: FPGA: 'ZDACW 37963' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:10:38.465 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:10:38.465 -07 000000590 INF: FPGA: Recv ZDACR 37963
17-03-18 02:10:38.475 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:38.475 -07 000000424 INF: Z Motor: MoveAbsStepped took 157 ms (did NOT wait for settling yet))
17-03-18 02:10:38.495 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 02:10:38.495 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 02:10:38.495 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:38.495 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 02:10:38.495 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:10:38.495 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:38.505 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:10:38.505 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:10:38.505 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:10:38.505 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:10:38.635 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:10:38.635 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 326 ms overall
17-03-18 02:10:38.815 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 02:10:38.815 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 02:10:38.865 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:38.865 -07 000000591 INF: FPGA: Recv YRDPOS 144768
17-03-18 02:10:38.875 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:10:38.875 -07 000000467 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:38.875 -07 000000467 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 02:10:38.875 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.840 mm, average velocity = 2.223 mm/sec
17-03-18 02:10:39.825 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:39.825 -07 000000606 INF: FPGA: Recv YRDPOS 144769
17-03-18 02:10:39.835 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:10:39.835 -07 000000467 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:39.855 -07 000000467 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:10:39.855 -07 000000467 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:10:39.855 -07 000000467 INF: Y Motor: Moved to 70.6880 after 1546 ms (table move)
17-03-18 02:10:39.865 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173783 mm (DAC = 37963)
17-03-18 02:10:39.865 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:39.865 -07 000000579 INF: FPGA: Recv ZSGSRD 36341
17-03-18 02:10:39.875 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:10:39.875 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:39.875 -07 000000606 INF: FPGA: Recv ZSGSRD 36345
17-03-18 02:10:39.885 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:39.885 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:39.885 -07 000000590 INF: FPGA: Recv ZSGSRD 36334
17-03-18 02:10:39.895 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:39.895 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:39.895 -07 000000462 INF: FPGA: Recv ZSGSRD 36341
17-03-18 02:10:39.905 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:39.905 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:39.905 -07 000000579 INF: FPGA: Recv ZSGSRD 36346
17-03-18 02:10:39.915 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:39.915 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:39.915 -07 000000430 INF: FPGA: Recv ZSGSRD 36340
17-03-18 02:10:39.925 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:39.925 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:39.925 -07 000000626 INF: FPGA: Recv ZSGSRD 36339
17-03-18 02:10:39.935 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:39.935 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:39.935 -07 000000591 INF: FPGA: Recv ZSGSRD 36341
17-03-18 02:10:39.945 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:39.945 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:39.945 -07 000000569 INF: FPGA: Recv ZSGSRD 36343
17-03-18 02:10:39.955 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:39.955 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:39.955 -07 000000467 INF: FPGA: Recv ZSGSRD 36344
17-03-18 02:10:39.965 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:39.965 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:10:39.965 -07 000000461 INF: FPGA: Recv ZPIEZORD 32411
17-03-18 02:10:39.975 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:39.975 -07 000000561 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.793 V. Piezo Error = -8.7 V.
17-03-18 02:10:39.975 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.8 um, Read 10 ADC samples: Avg = 36341 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36341 (-172.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36334 (-172.9 uncal um), Max = 36346 (-172.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:10:39.975 -07 000000561 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36341, posNoise = 5, negNoise = 7
17-03-18 02:10:39.975 -07 000000561 INF: Z Motor: After move to -0.173783, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:10:39.975 -07 000000561 INF: Z Motor: Settle wait time = 1425 ms, measure time = 110 ms (allowed 150 ms), total time = 1535 ms
17-03-18 02:10:39.975 -07 000000561 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:10:40.015 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1701 ms
17-03-18 02:10:40.015 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:10:40.015 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:10:40.015 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:10:40.015 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:10:40.015 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:10:40.015 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:10:40.015 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:10:40.015 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:10:40.015 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:10:40.025 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:10:40.025 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:10:40.035 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:10:40.035 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:10:40.035 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:10:40.085 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:10:40.385 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:10:40.385 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:10:40.385 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:10:40.385 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:10:40.425 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:10:40.425 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 02:10:40.425 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 372 ms to get response, and 384 ms overall
17-03-18 02:10:40.505 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:10:40.505 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:40.505 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:10:40.505 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:10:40.525 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:10:40.525 -07 000000461 INF: Autofocus start
17-03-18 02:10:40.525 -07 000000461 INF: MeasureProfile start
17-03-18 02:10:40.525 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:10:40.535 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:10:40.535 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:10:40.535 -07 000000461 INF: MeasureProfile done
17-03-18 02:10:40.535 -07 000000461 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:10:40.535 -07 000000461 INF: Autofocus finished
17-03-18 02:10:40.735 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:10:40.735 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:10:40.735 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.17378564545487. ----------
17-03-18 02:10:40.735 -07 000000610 INF: Cycle	96	Tile	14	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:10:40.745 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36460, sync = True, waitForSettling = True)
17-03-18 02:10:40.745 -07 000000610 INF: Z Motor: Moving to -0.166903 mm, started at -0.173786 mm, distance = 6.88 um
17-03-18 02:10:40.745 -07 000000610 INF: FPGA: Xmit ZDACW 36460\n [Z Motor]
17-03-18 02:10:40.745 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:10:40.755 -07 000000610 INF: FPGA: 'ZDACW 36460' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:40.755 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:10:40.755 -07 000000455 INF: FPGA: Recv ZDACR 36460
17-03-18 02:10:40.765 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:40.765 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:10:40.915 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:40.915 -07 000000424 INF: FPGA: Recv ZSGSRD 35274
17-03-18 02:10:40.925 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:10:40.925 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:40.925 -07 000000576 INF: FPGA: Recv ZSGSRD 35275
17-03-18 02:10:40.935 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:40.935 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:40.935 -07 000000606 INF: FPGA: Recv ZSGSRD 35268
17-03-18 02:10:40.945 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:40.945 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:40.945 -07 000000629 INF: FPGA: Recv ZSGSRD 35276
17-03-18 02:10:40.955 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:40.955 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:40.955 -07 000000455 INF: FPGA: Recv ZSGSRD 35276
17-03-18 02:10:40.965 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:40.965 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:40.965 -07 000000444 INF: FPGA: Recv ZSGSRD 35272
17-03-18 02:10:40.975 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:40.975 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:40.975 -07 000000512 INF: FPGA: Recv ZSGSRD 35273
17-03-18 02:10:40.985 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:40.985 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:40.985 -07 000000576 INF: FPGA: Recv ZSGSRD 35271
17-03-18 02:10:40.995 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:40.995 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:40.995 -07 000000455 INF: FPGA: Recv ZSGSRD 35270
17-03-18 02:10:41.005 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:41.005 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:41.005 -07 000000430 INF: FPGA: Recv ZSGSRD 35274
17-03-18 02:10:41.015 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:41.015 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:10:41.015 -07 000000569 INF: FPGA: Recv ZPIEZORD 31012
17-03-18 02:10:41.025 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:41.025 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.563 V. Piezo Error = -9.4 V.
17-03-18 02:10:41.025 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35273 (-166.1 uncal um), Error = 0.8 uncal um, Median = 35274 (-166.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35268 (-166.0 uncal um), Max = 35276 (-166.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:10:41.025 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35273, posNoise = 3, negNoise = 5
17-03-18 02:10:41.025 -07 000000610 INF: Z Motor: After move to -0.166903, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:10:41.025 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:10:41.025 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:10:41.025 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:10:41.025 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:10:41.025 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:10:41.025 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:10:41.025 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:10:41.025 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:10:41.025 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:10:41.025 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:10:41.025 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:10:41.025 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:10:41.025 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:10:41.025 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:10:41.025 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:10:41.035 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:10:41.035 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:10:41.035 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:10:41.035 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:10:41.045 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:10:41.045 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:10:41.045 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36637 150\n [Camera]
17-03-18 02:10:41.245 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:10:41.465 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:10:41.465 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:10:41.635 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:10:41.635 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:10:41.635 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:10:41.645 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:10:41.645 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:10:41.645 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:10:41.645 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:10:41.645 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:10:41.645 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:10:41.645 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:10:41.835 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36637 778
17-03-18 02:10:41.975 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:10:42.015 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 02:10:42.015 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 02:10:42.015 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:42.015 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 02:10:42.015 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 02:10:42.015 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:42.025 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:10:42.025 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:10:42.025 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:10:42.035 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:10:42.165 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:10:42.165 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:10:42.175 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:10:42.175 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:10:42.175 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:10:42.175 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:10:42.175 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:10:42.175 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:10:42.185 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:10:42.185 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:10:42.365 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:10:42.375 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:10:42.375 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36637 150' command took 2 ms to send, 1320 ms to get response, and 1326 ms overall
17-03-18 02:10:42.375 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:10:42.375 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.166924586887469. ------
17-03-18 02:10:42.375 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:10:42.375 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17359 mm
17-03-18 02:10:42.375 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:10:42.385 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 37921, sync = True, waitForSettling = False)
17-03-18 02:10:42.385 -07 000000579 INF: Z Motor: Moving to -0.173591 mm, started at -0.166925 mm, distance = -6.67 um
17-03-18 02:10:42.385 -07 000000579 INF: FPGA: Xmit ZDACW 37921\n [Z Motor]
17-03-18 02:10:42.385 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:10:42.385 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:10:42.385 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 02:10:42.385 -07 000000430 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 02:10:42.385 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:10:42.395 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:10:42.395 -07 000000579 INF: FPGA: 'ZDACW 37921' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:42.405 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:42.405 -07 000000626 INF: FPGA: Recv YRDPOS 144769
17-03-18 02:10:42.415 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:10:42.415 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:10:42.415 -07 000000430 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:42.415 -07 000000430 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:10:42.415 -07 000000430 INF: Y Motor: Moving 1351 steps-31
17-03-18 02:10:42.415 -07 000000512 INF: FPGA: Recv ZDACR 37921
17-03-18 02:10:42.425 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:10:42.425 -07 000000579 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 02:10:42.425 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:10:42.565 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 02:10:42.565 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 02:10:42.565 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:10:42.565 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:42.575 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:10:42.575 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:42.575 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:10:42.575 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:10:42.575 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:10:42.585 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 02:10:42.595 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:10:42.595 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-18 02:10:42.665 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 4.007176,
17-03-18 02:10:42.795 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 02:10:42.795 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 02:10:42.845 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:42.845 -07 000000502 INF: FPGA: Recv YRDPOS 146469
17-03-18 02:10:42.855 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:10:42.855 -07 000000430 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:42.855 -07 000000430 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 02:10:42.855 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.845 mm, average velocity = 2.194 mm/sec
17-03-18 02:10:43.805 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:43.805 -07 000000576 INF: FPGA: Recv YRDPOS 146469
17-03-18 02:10:43.815 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:10:43.815 -07 000000430 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:43.835 -07 000000430 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:10:43.835 -07 000000430 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:10:43.835 -07 000000430 INF: Y Motor: Moved to 71.5181 after 1457 ms (table move)
17-03-18 02:10:43.845 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173591 mm (DAC = 37921)
17-03-18 02:10:43.845 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:43.845 -07 000000462 INF: FPGA: Recv ZSGSRD 36309
17-03-18 02:10:43.855 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:10:43.855 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:43.855 -07 000000576 INF: FPGA: Recv ZSGSRD 36311
17-03-18 02:10:43.865 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:43.865 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:43.865 -07 000000424 INF: FPGA: Recv ZSGSRD 36314
17-03-18 02:10:43.875 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:43.875 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:43.875 -07 000000467 INF: FPGA: Recv ZSGSRD 36308
17-03-18 02:10:43.885 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:43.885 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:43.885 -07 000000430 INF: FPGA: Recv ZSGSRD 36308
17-03-18 02:10:43.895 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:43.895 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:43.895 -07 000000590 INF: FPGA: Recv ZSGSRD 36311
17-03-18 02:10:43.905 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:43.905 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:43.905 -07 000000591 INF: FPGA: Recv ZSGSRD 36305
17-03-18 02:10:43.915 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:43.915 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:43.915 -07 000000502 INF: FPGA: Recv ZSGSRD 36314
17-03-18 02:10:43.925 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:43.925 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:43.925 -07 000000512 INF: FPGA: Recv ZSGSRD 36306
17-03-18 02:10:43.935 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:43.935 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:43.935 -07 000000629 INF: FPGA: Recv ZSGSRD 36319
17-03-18 02:10:43.945 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:43.945 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:10:43.945 -07 000000561 INF: FPGA: Recv ZPIEZORD 32421
17-03-18 02:10:43.955 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:43.955 -07 000000569 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.786 V. Piezo Error = -8.6 V.
17-03-18 02:10:43.955 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36310 (-172.7 uncal um), Error = 0.9 uncal um, Median = 36310 (-172.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36305 (-172.7 uncal um), Max = 36319 (-172.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:10:43.955 -07 000000569 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36310, posNoise = 9, negNoise = 5
17-03-18 02:10:43.955 -07 000000569 INF: Z Motor: After move to -0.173591, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:10:43.955 -07 000000569 INF: Z Motor: Settle wait time = 1462 ms, measure time = 108 ms (allowed 150 ms), total time = 1570 ms
17-03-18 02:10:43.955 -07 000000569 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:10:44.005 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 02:10:44.005 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:10:44.005 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:10:44.005 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:10:44.005 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:10:44.005 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:10:44.005 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:10:44.005 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:10:44.015 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:10:44.015 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:10:44.015 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:10:44.015 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:10:44.025 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 02:10:44.025 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:10:44.025 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:10:44.065 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:10:44.365 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:10:44.365 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:10:44.375 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:10:44.375 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:10:44.405 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:10:44.405 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 02:10:44.405 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:10:44.485 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:10:44.485 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:44.485 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:10:44.495 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:10:44.505 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:10:44.505 -07 000000424 INF: Autofocus start
17-03-18 02:10:44.505 -07 000000424 INF: MeasureProfile start
17-03-18 02:10:44.505 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:10:44.515 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:10:44.515 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:10:44.525 -07 000000424 INF: MeasureProfile done
17-03-18 02:10:44.525 -07 000000424 INF: X=48  Z correction [um]=0.1739867
17-03-18 02:10:44.525 -07 000000424 INF: Autofocus finished
17-03-18 02:10:44.715 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:10:44.715 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:10:44.715 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.173586494878475. ----------
17-03-18 02:10:44.715 -07 000000610 INF: Cycle	96	Tile	15	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:10:44.725 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36472, sync = True, waitForSettling = True)
17-03-18 02:10:44.725 -07 000000610 INF: Z Motor: Moving to -0.166958 mm, started at -0.173586 mm, distance = 6.63 um
17-03-18 02:10:44.725 -07 000000610 INF: FPGA: Xmit ZDACW 36472\n [Z Motor]
17-03-18 02:10:44.725 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:10:44.735 -07 000000610 INF: FPGA: 'ZDACW 36472' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:44.735 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:10:44.735 -07 000000569 INF: FPGA: Recv ZDACR 36472
17-03-18 02:10:44.745 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:10:44.745 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:10:44.895 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:44.895 -07 000000626 INF: FPGA: Recv ZSGSRD 35277
17-03-18 02:10:44.905 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:10:44.905 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:44.905 -07 000000606 INF: FPGA: Recv ZSGSRD 35281
17-03-18 02:10:44.915 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:44.915 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:44.915 -07 000000591 INF: FPGA: Recv ZSGSRD 35284
17-03-18 02:10:44.925 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:44.925 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:44.925 -07 000000590 INF: FPGA: Recv ZSGSRD 35273
17-03-18 02:10:44.935 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:44.935 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:44.935 -07 000000424 INF: FPGA: Recv ZSGSRD 35280
17-03-18 02:10:44.945 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:44.945 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:44.945 -07 000000467 INF: FPGA: Recv ZSGSRD 35286
17-03-18 02:10:44.955 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:44.955 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:44.955 -07 000000606 INF: FPGA: Recv ZSGSRD 35279
17-03-18 02:10:44.965 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:44.965 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:44.965 -07 000000591 INF: FPGA: Recv ZSGSRD 35279
17-03-18 02:10:44.975 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:44.975 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:44.975 -07 000000590 INF: FPGA: Recv ZSGSRD 35274
17-03-18 02:10:44.985 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:44.985 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:44.985 -07 000000606 INF: FPGA: Recv ZSGSRD 35280
17-03-18 02:10:44.995 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:44.995 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:10:44.995 -07 000000461 INF: FPGA: Recv ZPIEZORD 31038
17-03-18 02:10:45.005 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:45.005 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.565 V. Piezo Error = -9.3 V.
17-03-18 02:10:45.005 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35279 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35280 (-166.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35273 (-166.1 uncal um), Max = 35286 (-166.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:10:45.005 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35279, posNoise = 7, negNoise = 6
17-03-18 02:10:45.005 -07 000000610 INF: Z Motor: After move to -0.166958, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:10:45.005 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:10:45.005 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:10:45.005 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:10:45.005 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:10:45.005 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:10:45.005 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:10:45.005 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:10:45.005 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:10:45.005 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:10:45.005 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:10:45.005 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:10:45.005 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:10:45.005 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:10:45.015 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:10:45.015 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:10:45.015 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:10:45.015 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:10:45.015 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:10:45.015 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:10:45.015 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:10:45.025 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:10:45.025 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36648 150\n [Camera]
17-03-18 02:10:45.225 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:10:45.615 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:10:45.615 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:10:45.615 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:10:45.615 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:10:45.625 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:10:45.625 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:10:45.625 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:10:45.625 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:10:45.625 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:10:45.625 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:10:45.805 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36648 778
17-03-18 02:10:45.965 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:10:46.015 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 02:10:46.015 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:10:46.015 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:46.025 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:10:46.025 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:10:46.025 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 02:10:46.025 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:10:46.025 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:46.025 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:10:46.035 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:10:46.145 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:10:46.145 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:10:46.145 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:10:46.155 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:10:46.155 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:10:46.155 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:10:46.155 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:10:46.155 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:10:46.155 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:10:46.155 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 02:10:46.335 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:10:46.345 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:10:46.345 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36648 150' command took 2 ms to send, 1310 ms to get response, and 1317 ms overall
17-03-18 02:10:46.345 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:10:46.345 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51806640625, Z-Position -0.16696313216032. ------
17-03-18 02:10:46.345 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:10:46.345 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17333 mm
17-03-18 02:10:46.345 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:10:46.355 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:10:46.355 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:10:46.355 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 02:10:46.355 -07 000000455 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 02:10:46.355 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:10:46.355 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 37865, sync = True, waitForSettling = False)
17-03-18 02:10:46.355 -07 000000576 INF: Z Motor: Moving to -0.173335 mm, started at -0.166963 mm, distance = -6.37 um
17-03-18 02:10:46.365 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:46.365 -07 000000626 INF: FPGA: Recv YRDPOS 146470
17-03-18 02:10:46.375 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:10:46.375 -07 000000455 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:46.375 -07 000000576 INF: FPGA: Xmit ZDACW 37865\n [Z Motor]
17-03-18 02:10:46.375 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:10:46.375 -07 000000455 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:10:46.375 -07 000000455 INF: Y Motor: Moving 1350 steps-30
17-03-18 02:10:46.385 -07 000000576 INF: FPGA: 'ZDACW 37865' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:10:46.385 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:10:46.385 -07 000000424 INF: FPGA: Recv ZDACR 37865
17-03-18 02:10:46.395 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:10:46.395 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:46.395 -07 000000576 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 02:10:46.465 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:10:46.465 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:10:46.555 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:10:46.555 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 02:10:46.555 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 02:10:46.555 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:10:46.555 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:46.555 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 02:10:46.555 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:10:46.555 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:46.565 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:10:46.565 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 02:10:46.565 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:10:46.565 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 02:10:46.765 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 02:10:46.765 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 02:10:46.815 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:46.815 -07 000000467 INF: FPGA: Recv YRDPOS 148171
17-03-18 02:10:46.825 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:10:46.825 -07 000000455 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:46.825 -07 000000455 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:10:46.825 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.845 mm, average velocity = 2.149 mm/sec
17-03-18 02:10:47.775 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:47.775 -07 000000461 INF: FPGA: Recv YRDPOS 148171
17-03-18 02:10:47.785 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:10:47.785 -07 000000455 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:47.805 -07 000000455 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:10:47.805 -07 000000455 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:10:47.805 -07 000000455 INF: Y Motor: Moved to 72.3491 after 1456 ms (table move)
17-03-18 02:10:47.815 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173335 mm (DAC = 37865)
17-03-18 02:10:47.815 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:47.815 -07 000000591 INF: FPGA: Recv ZSGSRD 36273
17-03-18 02:10:47.825 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:10:47.825 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:47.825 -07 000000461 INF: FPGA: Recv ZSGSRD 36276
17-03-18 02:10:47.835 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:47.835 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:47.835 -07 000000579 INF: FPGA: Recv ZSGSRD 36271
17-03-18 02:10:47.845 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:47.845 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:47.845 -07 000000444 INF: FPGA: Recv ZSGSRD 36273
17-03-18 02:10:47.855 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:47.855 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:47.855 -07 000000512 INF: FPGA: Recv ZSGSRD 36277
17-03-18 02:10:47.865 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:47.865 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:47.865 -07 000000626 INF: FPGA: Recv ZSGSRD 36272
17-03-18 02:10:47.875 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:47.875 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:47.875 -07 000000629 INF: FPGA: Recv ZSGSRD 36267
17-03-18 02:10:47.885 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:47.885 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:47.885 -07 000000424 INF: FPGA: Recv ZSGSRD 36274
17-03-18 02:10:47.895 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:47.895 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:47.895 -07 000000462 INF: FPGA: Recv ZSGSRD 36280
17-03-18 02:10:47.905 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:47.905 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:47.905 -07 000000444 INF: FPGA: Recv ZSGSRD 36276
17-03-18 02:10:47.915 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:47.915 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:10:47.915 -07 000000576 INF: FPGA: Recv ZPIEZORD 32381
17-03-18 02:10:47.925 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:47.925 -07 000000569 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.778 V. Piezo Error = -8.6 V.
17-03-18 02:10:47.925 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36274 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36274 (-172.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36267 (-172.4 uncal um), Max = 36280 (-172.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:10:47.925 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36274, posNoise = 6, negNoise = 7
17-03-18 02:10:47.925 -07 000000569 INF: Z Motor: After move to -0.173335, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:10:47.925 -07 000000569 INF: Z Motor: Settle wait time = 1459 ms, measure time = 109 ms (allowed 150 ms), total time = 1568 ms
17-03-18 02:10:47.925 -07 000000569 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:10:47.975 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 02:10:47.975 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:10:47.975 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:10:47.975 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:10:47.975 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:10:47.975 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:10:47.975 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:10:47.975 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:10:47.975 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:10:47.975 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:10:47.985 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:10:47.985 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:10:47.995 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:10:47.995 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:10:47.995 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:10:48.025 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 4.003063,
17-03-18 02:10:48.045 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:10:48.345 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:10:48.345 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:10:48.345 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:10:48.345 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 02:10:48.375 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:10:48.385 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 02:10:48.385 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:10:48.465 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 02:10:48.465 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:48.475 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:10:48.475 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 02:10:48.485 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:10:48.485 -07 000000462 INF: Autofocus start
17-03-18 02:10:48.485 -07 000000462 INF: MeasureProfile start
17-03-18 02:10:48.485 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:10:48.495 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:10:48.495 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:10:48.505 -07 000000462 INF: MeasureProfile done
17-03-18 02:10:48.505 -07 000000462 INF: X=48  Z correction [um]=0.1739867
17-03-18 02:10:48.505 -07 000000462 INF: Autofocus finished
17-03-18 02:10:48.695 -07 000000430 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:10:48.695 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:10:48.695 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173355223241372. ----------
17-03-18 02:10:48.695 -07 000000610 INF: Cycle	96	Tile	16	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:10:48.705 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36415, sync = True, waitForSettling = True)
17-03-18 02:10:48.705 -07 000000610 INF: Z Motor: Moving to -0.166697 mm, started at -0.173355 mm, distance = 6.66 um
17-03-18 02:10:48.705 -07 000000610 INF: FPGA: Xmit ZDACW 36415\n [Z Motor]
17-03-18 02:10:48.705 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:10:48.715 -07 000000610 INF: FPGA: 'ZDACW 36415' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:10:48.715 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:10:48.715 -07 000000455 INF: FPGA: Recv ZDACR 36415
17-03-18 02:10:48.725 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:48.725 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:10:48.875 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:48.875 -07 000000606 INF: FPGA: Recv ZSGSRD 35239
17-03-18 02:10:48.885 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:48.885 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:48.885 -07 000000579 INF: FPGA: Recv ZSGSRD 35240
17-03-18 02:10:48.895 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:48.895 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:48.895 -07 000000424 INF: FPGA: Recv ZSGSRD 35235
17-03-18 02:10:48.905 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:48.905 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:48.905 -07 000000590 INF: FPGA: Recv ZSGSRD 35243
17-03-18 02:10:48.915 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:48.915 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:48.915 -07 000000629 INF: FPGA: Recv ZSGSRD 35245
17-03-18 02:10:48.925 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:48.925 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:48.925 -07 000000561 INF: FPGA: Recv ZSGSRD 35242
17-03-18 02:10:48.935 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:48.935 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:48.935 -07 000000591 INF: FPGA: Recv ZSGSRD 35235
17-03-18 02:10:48.945 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:48.945 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:48.945 -07 000000424 INF: FPGA: Recv ZSGSRD 35241
17-03-18 02:10:48.955 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:48.955 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:48.955 -07 000000606 INF: FPGA: Recv ZSGSRD 35240
17-03-18 02:10:48.965 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:48.965 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:48.965 -07 000000455 INF: FPGA: Recv ZSGSRD 35239
17-03-18 02:10:48.975 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:48.975 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:10:48.975 -07 000000424 INF: FPGA: Recv ZPIEZORD 30989
17-03-18 02:10:48.985 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:48.985 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.557 V. Piezo Error = -9.4 V.
17-03-18 02:10:48.985 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35240 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35240 (-165.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35235 (-165.8 uncal um), Max = 35245 (-165.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:10:48.985 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35240, posNoise = 5, negNoise = 5
17-03-18 02:10:48.985 -07 000000610 INF: Z Motor: After move to -0.166697, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:10:48.985 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:10:48.985 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:10:48.985 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:10:48.985 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:10:48.985 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:10:48.985 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:10:48.985 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:10:48.985 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:10:48.985 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:10:48.985 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:10:48.985 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:10:48.985 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:10:48.985 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:10:48.995 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:10:48.995 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:10:48.995 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:10:48.995 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:10:48.995 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:10:48.995 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:10:49.005 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:10:49.005 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:10:49.005 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36592 150\n [Camera]
17-03-18 02:10:49.205 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:10:49.595 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:10:49.595 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:10:49.595 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:10:49.595 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:10:49.595 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:10:49.605 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:10:49.605 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:10:49.605 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:10:49.605 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:10:49.605 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:10:49.795 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36592 778
17-03-18 02:10:49.935 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:10:49.975 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:10:49.975 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:10:49.975 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:49.975 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 02:10:49.975 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 02:10:49.975 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:49.985 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:10:49.985 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:10:49.985 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:10:49.985 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:10:50.125 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:10:50.125 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:10:50.135 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:10:50.135 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:10:50.135 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:10:50.135 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:10:50.135 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:10:50.135 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:10:50.135 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:10:50.135 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:10:50.325 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:10:50.325 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:10:50.325 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36592 150' command took 2 ms to send, 1311 ms to get response, and 1316 ms overall
17-03-18 02:10:50.325 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:10:50.325 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.166712587886791. ------
17-03-18 02:10:50.455 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:10:50.455 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17333 mm
17-03-18 02:10:50.455 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:10:50.455 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 02:10:50.455 -07 000000424 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 02:10:50.455 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 37864, sync = True, waitForSettling = False)
17-03-18 02:10:50.455 -07 000000467 INF: Z Motor: Moving to -0.173330 mm, started at -0.166713 mm, distance = -6.62 um
17-03-18 02:10:50.465 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:10:50.465 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:10:50.465 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:50.465 -07 000000576 INF: FPGA: Recv YRDPOS 148171
17-03-18 02:10:50.475 -07 000000467 INF: FPGA: Xmit ZDACW 37864\n [Z Motor]
17-03-18 02:10:50.475 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:10:50.475 -07 000000424 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:50.475 -07 000000424 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:10:50.475 -07 000000424 INF: Y Motor: Moving 1350 steps-28
17-03-18 02:10:50.475 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:10:50.485 -07 000000467 INF: FPGA: 'ZDACW 37864' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:10:50.485 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:10:50.495 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:10:50.505 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:10:50.505 -07 000000512 INF: FPGA: Recv ZDACR 37864
17-03-18 02:10:50.515 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:10:50.515 -07 000000467 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 02:10:50.525 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 02:10:50.525 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:10:50.525 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:50.525 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:10:50.525 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:10:50.525 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:50.535 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:10:50.535 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 02:10:50.535 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:10:50.535 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:10:50.685 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:10:50.685 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 02:10:50.865 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 02:10:50.865 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:10:50.915 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:50.915 -07 000000629 INF: FPGA: Recv YRDPOS 149863
17-03-18 02:10:50.925 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:10:50.925 -07 000000424 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:50.925 -07 000000424 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 02:10:50.925 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.125 mm/sec
17-03-18 02:10:51.465 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:10:51.465 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:10:51.875 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:51.875 -07 000000512 INF: FPGA: Recv YRDPOS 149863
17-03-18 02:10:51.885 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:10:51.885 -07 000000424 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:51.905 -07 000000424 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:10:51.905 -07 000000424 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:10:51.905 -07 000000424 INF: Y Motor: Moved to 73.1753 after 1449 ms (table move)
17-03-18 02:10:51.915 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173330 mm (DAC = 37864)
17-03-18 02:10:51.915 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:51.915 -07 000000424 INF: FPGA: Recv ZSGSRD 36277
17-03-18 02:10:51.925 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:10:51.925 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:51.925 -07 000000576 INF: FPGA: Recv ZSGSRD 36275
17-03-18 02:10:51.935 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:51.935 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:51.935 -07 000000591 INF: FPGA: Recv ZSGSRD 36273
17-03-18 02:10:51.945 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:51.945 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:51.945 -07 000000430 INF: FPGA: Recv ZSGSRD 36274
17-03-18 02:10:51.955 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:51.955 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:51.955 -07 000000579 INF: FPGA: Recv ZSGSRD 36275
17-03-18 02:10:51.965 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:51.965 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:51.965 -07 000000629 INF: FPGA: Recv ZSGSRD 36271
17-03-18 02:10:51.975 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:51.975 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:51.975 -07 000000591 INF: FPGA: Recv ZSGSRD 36275
17-03-18 02:10:51.985 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:51.985 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:51.985 -07 000000424 INF: FPGA: Recv ZSGSRD 36268
17-03-18 02:10:51.995 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:51.995 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:51.995 -07 000000462 INF: FPGA: Recv ZSGSRD 36265
17-03-18 02:10:52.005 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:52.005 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:52.005 -07 000000569 INF: FPGA: Recv ZSGSRD 36274
17-03-18 02:10:52.015 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:52.015 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:10:52.015 -07 000000430 INF: FPGA: Recv ZPIEZORD 32371
17-03-18 02:10:52.025 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:52.025 -07 000000590 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.778 V. Piezo Error = -8.6 V.
17-03-18 02:10:52.025 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36273 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36274 (-172.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36265 (-172.4 uncal um), Max = 36277 (-172.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:10:52.025 -07 000000590 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36273, posNoise = 4, negNoise = 8
17-03-18 02:10:52.025 -07 000000590 INF: Z Motor: After move to -0.173330, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:10:52.025 -07 000000590 INF: Z Motor: Settle wait time = 1454 ms, measure time = 108 ms (allowed 150 ms), total time = 1562 ms
17-03-18 02:10:52.025 -07 000000590 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:10:52.075 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 02:10:52.075 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:10:52.075 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:10:52.075 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:10:52.075 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:10:52.075 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:10:52.075 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:10:52.075 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:10:52.075 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:10:52.085 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:10:52.085 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:10:52.085 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:10:52.085 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:10:52.085 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:10:52.095 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:10:52.135 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:10:52.435 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:10:52.435 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:10:52.435 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:10:52.435 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:10:52.475 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:10:52.475 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 02:10:52.475 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:10:52.555 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:10:52.555 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:52.555 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:10:52.555 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:10:52.575 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:10:52.575 -07 000000512 INF: Autofocus start
17-03-18 02:10:52.575 -07 000000512 INF: MeasureProfile start
17-03-18 02:10:52.575 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:10:52.585 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:10:52.585 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:10:52.585 -07 000000512 INF: MeasureProfile done
17-03-18 02:10:52.585 -07 000000512 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 02:10:52.585 -07 000000512 INF: Autofocus finished
17-03-18 02:10:52.785 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:10:52.785 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:10:52.785 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.17334879902923. ----------
17-03-18 02:10:52.785 -07 000000610 INF: Cycle	96	Tile	17	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:10:52.795 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36343, sync = True, waitForSettling = True)
17-03-18 02:10:52.795 -07 000000610 INF: Z Motor: Moving to -0.166368 mm, started at -0.173349 mm, distance = 6.98 um
17-03-18 02:10:52.795 -07 000000610 INF: FPGA: Xmit ZDACW 36343\n [Z Motor]
17-03-18 02:10:52.795 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:10:52.805 -07 000000610 INF: FPGA: 'ZDACW 36343' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:10:52.805 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:10:52.805 -07 000000591 INF: FPGA: Recv ZDACR 36343
17-03-18 02:10:52.815 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:52.815 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:10:52.965 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:52.965 -07 000000606 INF: FPGA: Recv ZSGSRD 35182
17-03-18 02:10:52.975 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:10:52.975 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:52.975 -07 000000561 INF: FPGA: Recv ZSGSRD 35186
17-03-18 02:10:52.985 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:52.985 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:52.985 -07 000000461 INF: FPGA: Recv ZSGSRD 35186
17-03-18 02:10:52.995 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:52.995 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:52.995 -07 000000430 INF: FPGA: Recv ZSGSRD 35190
17-03-18 02:10:53.005 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:53.005 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:53.005 -07 000000512 INF: FPGA: Recv ZSGSRD 35189
17-03-18 02:10:53.015 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:53.015 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:53.015 -07 000000579 INF: FPGA: Recv ZSGSRD 35190
17-03-18 02:10:53.025 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:53.025 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:53.025 -07 000000455 INF: FPGA: Recv ZSGSRD 35188
17-03-18 02:10:53.035 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:53.035 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:53.035 -07 000000461 INF: FPGA: Recv ZSGSRD 35191
17-03-18 02:10:53.045 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:53.045 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:53.045 -07 000000430 INF: FPGA: Recv ZSGSRD 35189
17-03-18 02:10:53.055 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:53.055 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:53.055 -07 000000512 INF: FPGA: Recv ZSGSRD 35180
17-03-18 02:10:53.065 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:53.075 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:10:53.075 -07 000000591 INF: FPGA: Recv ZPIEZORD 30937
17-03-18 02:10:53.085 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:10:53.085 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.546 V. Piezo Error = -9.4 V.
17-03-18 02:10:53.085 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35187 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35188 (-165.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35180 (-165.5 uncal um), Max = 35191 (-165.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:10:53.085 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35187, posNoise = 4, negNoise = 7
17-03-18 02:10:53.085 -07 000000610 INF: Z Motor: After move to -0.166368, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:10:53.085 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 02:10:53.085 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:10:53.085 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:10:53.085 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:10:53.085 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:10:53.085 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:10:53.085 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:10:53.085 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:10:53.085 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:10:53.085 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:10:53.085 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:10:53.085 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:10:53.085 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:10:53.095 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:10:53.095 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:10:53.095 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:10:53.095 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:10:53.095 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:10:53.095 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:10:53.105 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 02:10:53.105 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:10:53.105 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36520 150\n [Camera]
17-03-18 02:10:53.305 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:10:53.385 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 4.026244,
17-03-18 02:10:53.695 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:10:53.695 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:10:53.695 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:10:53.705 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:10:53.705 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:10:53.705 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:10:53.705 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:10:53.705 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:10:53.705 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:10:53.705 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:10:53.895 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36520 778
17-03-18 02:10:54.045 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:10:54.095 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 02:10:54.095 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:10:54.095 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:54.095 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 02:10:54.095 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:10:54.095 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:54.105 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:10:54.105 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:10:54.105 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:10:54.105 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 02:10:54.225 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:10:54.235 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:10:54.235 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:10:54.235 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:10:54.235 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:10:54.235 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:10:54.245 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:10:54.245 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:10:54.245 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:10:54.245 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:10:54.425 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:10:54.425 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:10:54.425 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36520 150' command took 2 ms to send, 1311 ms to get response, and 1316 ms overall
17-03-18 02:10:54.425 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:10:54.425 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.166372104643278. ------
17-03-18 02:10:54.545 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17267 mm
17-03-18 02:10:54.545 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:10:54.545 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:10:54.545 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:10:54.545 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 02:10:54.545 -07 000000576 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 02:10:54.545 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 37721, sync = True, waitForSettling = False)
17-03-18 02:10:54.545 -07 000000512 INF: Z Motor: Moving to -0.172676 mm, started at -0.166372 mm, distance = -6.30 um
17-03-18 02:10:54.555 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:10:54.555 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:54.555 -07 000000502 INF: FPGA: Recv YRDPOS 149864
17-03-18 02:10:54.565 -07 000000512 INF: FPGA: Xmit ZDACW 37721\n [Z Motor]
17-03-18 02:10:54.565 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:10:54.565 -07 000000576 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:54.565 -07 000000576 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:10:54.565 -07 000000576 INF: Y Motor: Moving 1355 steps-35
17-03-18 02:10:54.565 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:10:54.575 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:10:54.575 -07 000000512 INF: FPGA: 'ZDACW 37721' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:10:54.585 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:10:54.595 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:10:54.595 -07 000000462 INF: FPGA: Recv ZDACR 37721
17-03-18 02:10:54.605 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:10:54.605 -07 000000512 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 02:10:54.635 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 02:10:54.635 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:10:54.635 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:54.635 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:10:54.635 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:10:54.635 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:54.645 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:10:54.645 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:10:54.645 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 02:10:54.645 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:10:54.775 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:10:54.775 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:10:54.965 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 02:10:54.965 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 396 ms overall
17-03-18 02:10:54.995 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:54.995 -07 000000444 INF: FPGA: Recv YRDPOS 151568
17-03-18 02:10:55.005 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:10:55.005 -07 000000576 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:55.005 -07 000000576 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 02:10:55.005 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.847 mm, average velocity = 2.140 mm/sec
17-03-18 02:10:55.955 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:55.955 -07 000000430 INF: FPGA: Recv YRDPOS 151568
17-03-18 02:10:55.965 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:10:55.965 -07 000000576 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:55.985 -07 000000576 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:10:55.985 -07 000000576 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:10:55.985 -07 000000576 INF: Y Motor: Moved to 74.0078 after 1434 ms (table move)
17-03-18 02:10:55.985 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172676 mm (DAC = 37721)
17-03-18 02:10:55.985 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:55.985 -07 000000606 INF: FPGA: Recv ZSGSRD 36179
17-03-18 02:10:55.995 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:10:55.995 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:55.995 -07 000000455 INF: FPGA: Recv ZSGSRD 36170
17-03-18 02:10:56.005 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:56.005 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:56.005 -07 000000561 INF: FPGA: Recv ZSGSRD 36166
17-03-18 02:10:56.015 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:56.015 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:56.015 -07 000000626 INF: FPGA: Recv ZSGSRD 36175
17-03-18 02:10:56.025 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:56.025 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:56.025 -07 000000502 INF: FPGA: Recv ZSGSRD 36176
17-03-18 02:10:56.035 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:56.035 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:56.035 -07 000000444 INF: FPGA: Recv ZSGSRD 36170
17-03-18 02:10:56.045 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:56.045 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:56.045 -07 000000444 INF: FPGA: Recv ZSGSRD 36177
17-03-18 02:10:56.055 -07 000000591 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:56.055 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:56.055 -07 000000561 INF: FPGA: Recv ZSGSRD 36170
17-03-18 02:10:56.065 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:56.065 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:56.065 -07 000000590 INF: FPGA: Recv ZSGSRD 36172
17-03-18 02:10:56.075 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:56.075 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:56.075 -07 000000462 INF: FPGA: Recv ZSGSRD 36169
17-03-18 02:10:56.085 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:56.085 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:10:56.085 -07 000000467 INF: FPGA: Recv ZPIEZORD 32245
17-03-18 02:10:56.095 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:56.095 -07 000000591 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.756 V. Piezo Error = -8.7 V.
17-03-18 02:10:56.095 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36172 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36171 (-171.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36166 (-171.8 uncal um), Max = 36179 (-171.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:10:56.095 -07 000000591 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36172, posNoise = 7, negNoise = 6
17-03-18 02:10:56.095 -07 000000591 INF: Z Motor: After move to -0.172676, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:10:56.095 -07 000000591 INF: Z Motor: Settle wait time = 1437 ms, measure time = 107 ms (allowed 150 ms), total time = 1544 ms
17-03-18 02:10:56.095 -07 000000591 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:10:56.145 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-18 02:10:56.145 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:10:56.145 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:10:56.145 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:10:56.145 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:10:56.145 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:10:56.145 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:10:56.145 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:10:56.145 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:10:56.145 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:10:56.145 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:10:56.155 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:10:56.155 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:10:56.155 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:10:56.165 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:10:56.205 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:10:56.465 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:10:56.465 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:10:56.505 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:10:56.505 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:10:56.505 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:10:56.515 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:10:56.545 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:10:56.545 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 02:10:56.545 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 388 ms overall
17-03-18 02:10:56.625 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 02:10:56.625 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:56.635 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:10:56.635 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 02:10:56.645 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:10:56.645 -07 000000561 INF: Autofocus start
17-03-18 02:10:56.645 -07 000000561 INF: MeasureProfile start
17-03-18 02:10:56.645 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:10:56.655 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:10:56.655 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:10:56.655 -07 000000561 INF: MeasureProfile done
17-03-18 02:10:56.655 -07 000000561 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:10:56.655 -07 000000561 INF: Autofocus finished
17-03-18 02:10:56.855 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:10:56.855 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:10:56.855 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.172699953602912. ----------
17-03-18 02:10:56.855 -07 000000610 INF: Cycle	96	Tile	18	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:10:56.865 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36218, sync = True, waitForSettling = True)
17-03-18 02:10:56.865 -07 000000610 INF: Z Motor: Moving to -0.165795 mm, started at -0.172700 mm, distance = 6.90 um
17-03-18 02:10:56.865 -07 000000610 INF: FPGA: Xmit ZDACW 36218\n [Z Motor]
17-03-18 02:10:56.865 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:10:56.875 -07 000000610 INF: FPGA: 'ZDACW 36218' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:10:56.875 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:10:56.875 -07 000000444 INF: FPGA: Recv ZDACR 36218
17-03-18 02:10:56.885 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:56.885 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:10:57.035 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:57.035 -07 000000424 INF: FPGA: Recv ZSGSRD 35094
17-03-18 02:10:57.045 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:57.045 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:57.045 -07 000000461 INF: FPGA: Recv ZSGSRD 35104
17-03-18 02:10:57.055 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:57.055 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:57.055 -07 000000591 INF: FPGA: Recv ZSGSRD 35102
17-03-18 02:10:57.065 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:57.065 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:57.065 -07 000000512 INF: FPGA: Recv ZSGSRD 35098
17-03-18 02:10:57.075 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:57.075 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:57.075 -07 000000626 INF: FPGA: Recv ZSGSRD 35101
17-03-18 02:10:57.085 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:57.085 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:57.085 -07 000000569 INF: FPGA: Recv ZSGSRD 35094
17-03-18 02:10:57.095 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:57.095 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:57.095 -07 000000502 INF: FPGA: Recv ZSGSRD 35103
17-03-18 02:10:57.105 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:57.105 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:57.105 -07 000000591 INF: FPGA: Recv ZSGSRD 35103
17-03-18 02:10:57.115 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:57.115 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:57.115 -07 000000512 INF: FPGA: Recv ZSGSRD 35094
17-03-18 02:10:57.125 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:57.125 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:57.125 -07 000000561 INF: FPGA: Recv ZSGSRD 35103
17-03-18 02:10:57.135 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:57.135 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:10:57.135 -07 000000569 INF: FPGA: Recv ZPIEZORD 30840
17-03-18 02:10:57.145 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:57.145 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.527 V. Piezo Error = -9.4 V.
17-03-18 02:10:57.145 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.8 um, Read 10 ADC samples: Avg = 35100 (-164.9 uncal um), Error = 0.8 uncal um, Median = 35102 (-165.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35094 (-164.9 uncal um), Max = 35104 (-165.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:10:57.145 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35100, posNoise = 4, negNoise = 6
17-03-18 02:10:57.145 -07 000000610 INF: Z Motor: After move to -0.165795, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:10:57.145 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:10:57.145 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:10:57.145 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:10:57.145 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:10:57.145 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:10:57.145 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:10:57.145 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:10:57.145 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:10:57.145 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:10:57.145 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:10:57.145 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:10:57.145 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:10:57.145 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:10:57.155 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:10:57.155 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:10:57.155 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:10:57.155 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:10:57.165 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:10:57.165 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:10:57.165 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 02:10:57.165 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:10:57.165 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36394 150\n [Camera]
17-03-18 02:10:57.365 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 02:10:57.765 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:10:57.765 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:10:57.765 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:10:57.765 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:10:57.765 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:10:57.775 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:10:57.775 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:10:57.775 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:10:57.775 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:10:57.775 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:10:57.955 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36394 778
17-03-18 02:10:58.105 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:10:58.145 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 368 ms.
17-03-18 02:10:58.145 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 02:10:58.145 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:58.145 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 02:10:58.145 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 02:10:58.145 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:58.145 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:10:58.155 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:10:58.155 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:10:58.155 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:10:58.295 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:10:58.295 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:10:58.295 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:10:58.295 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:10:58.295 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:10:58.295 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:10:58.295 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:10:58.295 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:10:58.295 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:10:58.295 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:10:58.485 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:10:58.485 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:10:58.485 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36394 150' command took 2 ms to send, 1304 ms to get response, and 1316 ms overall
17-03-18 02:10:58.485 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:10:58.485 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.165813198186945. ------
17-03-18 02:10:58.485 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:10:58.485 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17161 mm
17-03-18 02:10:58.485 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:10:58.495 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:10:58.495 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 02:10:58.495 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:10:58.495 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 02:10:58.495 -07 000000626 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 02:10:58.495 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 37487, sync = True, waitForSettling = False)
17-03-18 02:10:58.495 -07 000000424 INF: Z Motor: Moving to -0.171604 mm, started at -0.165813 mm, distance = -5.79 um
17-03-18 02:10:58.505 -07 000000424 INF: FPGA: Xmit ZDACW 37487\n [Z Motor]
17-03-18 02:10:58.505 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:10:58.515 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:58.515 -07 000000424 INF: FPGA: 'ZDACW 37487' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:10:58.515 -07 000000569 INF: FPGA: Recv YRDPOS 151568
17-03-18 02:10:58.525 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:10:58.525 -07 000000626 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:58.525 -07 000000626 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:10:58.525 -07 000000626 INF: Y Motor: Moving 1352 steps-30
17-03-18 02:10:58.525 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:10:58.525 -07 000000462 INF: FPGA: Recv ZDACR 37487
17-03-18 02:10:58.535 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:10:58.535 -07 000000424 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 02:10:58.535 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:10:58.685 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 02:10:58.685 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:10:58.685 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:58.685 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 02:10:58.685 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:10:58.685 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:10:58.685 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:10:58.695 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:10:58.695 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:10:58.695 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:10:58.695 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:10:58.695 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 02:10:58.745 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 4.02213,
17-03-18 02:10:58.905 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 02:10:58.905 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:10:58.935 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:58.935 -07 000000462 INF: FPGA: Recv YRDPOS 153254
17-03-18 02:10:58.945 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:10:58.945 -07 000000626 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:58.945 -07 000000626 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 02:10:58.945 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.845 mm, average velocity = 2.177 mm/sec
17-03-18 02:10:59.895 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:10:59.895 -07 000000590 INF: FPGA: Recv YRDPOS 153255
17-03-18 02:10:59.905 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:10:59.905 -07 000000626 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:10:59.915 -07 000000626 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:10:59.915 -07 000000626 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:10:59.915 -07 000000626 INF: Y Motor: Moved to 74.8315 after 1423 ms (table move)
17-03-18 02:10:59.925 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171604 mm (DAC = 37487)
17-03-18 02:10:59.925 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:59.925 -07 000000579 INF: FPGA: Recv ZSGSRD 36015
17-03-18 02:10:59.935 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:10:59.935 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:59.935 -07 000000606 INF: FPGA: Recv ZSGSRD 36007
17-03-18 02:10:59.945 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:59.945 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:59.945 -07 000000430 INF: FPGA: Recv ZSGSRD 36002
17-03-18 02:10:59.955 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:59.955 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:59.955 -07 000000626 INF: FPGA: Recv ZSGSRD 35999
17-03-18 02:10:59.965 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:59.965 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:59.965 -07 000000576 INF: FPGA: Recv ZSGSRD 36008
17-03-18 02:10:59.975 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:59.975 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:59.975 -07 000000424 INF: FPGA: Recv ZSGSRD 36005
17-03-18 02:10:59.985 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:59.985 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:59.985 -07 000000430 INF: FPGA: Recv ZSGSRD 36007
17-03-18 02:10:59.995 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:10:59.995 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:10:59.995 -07 000000590 INF: FPGA: Recv ZSGSRD 36005
17-03-18 02:11:00.005 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:00.005 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:00.005 -07 000000590 INF: FPGA: Recv ZSGSRD 36012
17-03-18 02:11:00.015 -07 000000461 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:00.015 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:00.015 -07 000000626 INF: FPGA: Recv ZSGSRD 36003
17-03-18 02:11:00.025 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:00.025 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:11:00.025 -07 000000467 INF: FPGA: Recv ZPIEZORD 32049
17-03-18 02:11:00.035 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:00.035 -07 000000461 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.720 V. Piezo Error = -8.7 V.
17-03-18 02:11:00.035 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36006 (-170.8 uncal um), Error = 0.8 uncal um, Median = 36006 (-170.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35999 (-170.7 uncal um), Max = 36015 (-170.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:11:00.035 -07 000000461 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36006, posNoise = 9, negNoise = 7
17-03-18 02:11:00.035 -07 000000461 INF: Z Motor: After move to -0.171604, error = -0.000029, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:11:00.035 -07 000000461 INF: Z Motor: Settle wait time = 1426 ms, measure time = 109 ms (allowed 150 ms), total time = 1535 ms
17-03-18 02:11:00.035 -07 000000461 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:11:00.085 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-18 02:11:00.085 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:11:00.085 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:11:00.085 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:11:00.085 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:11:00.085 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:11:00.085 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:11:00.085 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:11:00.085 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:11:00.085 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:11:00.085 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:11:00.085 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:11:00.095 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:11:00.095 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:11:00.105 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:11:00.145 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:11:00.445 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:11:00.445 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:11:00.445 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:11:00.445 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) start.
17-03-18 02:11:00.485 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:11:00.485 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 02:11:00.485 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:11:00.565 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1182469392, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 02:11:00.565 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:00.565 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:11:00.565 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:11:00.585 -07 000000590 INF: Autofocus start
17-03-18 02:11:00.585 -07 000000590 INF: MeasureProfile start
17-03-18 02:11:00.585 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:11:00.585 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:11:00.595 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:11:00.595 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:11:00.595 -07 000000590 INF: MeasureProfile done
17-03-18 02:11:00.595 -07 000000590 INF: X=144  Z correction [um]=0.6646646
17-03-18 02:11:00.595 -07 000000590 INF: Autofocus finished
17-03-18 02:11:00.795 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:11:00.795 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:11:00.795 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.17163353438738. ----------
17-03-18 02:11:00.795 -07 000000610 INF: Cycle	96	Tile	19	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:11:00.805 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36145, sync = True, waitForSettling = True)
17-03-18 02:11:00.805 -07 000000610 INF: Z Motor: Moving to -0.165461 mm, started at -0.171634 mm, distance = 6.17 um
17-03-18 02:11:00.805 -07 000000610 INF: FPGA: Xmit ZDACW 36145\n [Z Motor]
17-03-18 02:11:00.805 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:11:00.815 -07 000000610 INF: FPGA: 'ZDACW 36145' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:00.815 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:11:00.815 -07 000000502 INF: FPGA: Recv ZDACR 36145
17-03-18 02:11:00.825 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:00.825 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:11:00.975 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:00.975 -07 000000626 INF: FPGA: Recv ZSGSRD 35047
17-03-18 02:11:00.985 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:00.985 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:00.985 -07 000000629 INF: FPGA: Recv ZSGSRD 35050
17-03-18 02:11:00.995 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:00.995 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:00.995 -07 000000430 INF: FPGA: Recv ZSGSRD 35052
17-03-18 02:11:01.005 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:01.005 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:01.005 -07 000000461 INF: FPGA: Recv ZSGSRD 35049
17-03-18 02:11:01.015 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:01.015 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:01.015 -07 000000512 INF: FPGA: Recv ZSGSRD 35046
17-03-18 02:11:01.025 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:01.025 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:01.025 -07 000000626 INF: FPGA: Recv ZSGSRD 35050
17-03-18 02:11:01.035 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:01.035 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:01.035 -07 000000579 INF: FPGA: Recv ZSGSRD 35047
17-03-18 02:11:01.045 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:01.045 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:01.045 -07 000000430 INF: FPGA: Recv ZSGSRD 35052
17-03-18 02:11:01.055 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:01.055 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:01.055 -07 000000462 INF: FPGA: Recv ZSGSRD 35048
17-03-18 02:11:01.065 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:01.065 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:01.065 -07 000000512 INF: FPGA: Recv ZSGSRD 35046
17-03-18 02:11:01.075 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:01.075 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:11:01.075 -07 000000590 INF: FPGA: Recv ZPIEZORD 30747
17-03-18 02:11:01.085 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:01.085 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.515 V. Piezo Error = -9.5 V.
17-03-18 02:11:01.085 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.5 um, Read 10 ADC samples: Avg = 35049 (-164.6 uncal um), Error = 0.8 uncal um, Median = 35048 (-164.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35046 (-164.6 uncal um), Max = 35052 (-164.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:11:01.085 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35049, posNoise = 3, negNoise = 3
17-03-18 02:11:01.085 -07 000000610 INF: Z Motor: After move to -0.165461, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:11:01.085 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:11:01.085 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:11:01.085 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:11:01.085 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:11:01.085 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:11:01.085 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:11:01.085 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:11:01.085 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:11:01.085 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:11:01.085 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:11:01.085 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:11:01.085 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:11:01.085 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:11:01.085 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:11:01.085 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:11:01.095 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:11:01.095 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:11:01.105 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:11:01.105 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:11:01.105 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:11:01.105 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:11:01.105 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36322 150\n [Camera]
17-03-18 02:11:01.305 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:11:01.465 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:11:01.465 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:11:01.695 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:11:01.695 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:11:01.695 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:11:01.695 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:11:01.695 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:11:01.705 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:11:01.705 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:11:01.705 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:11:01.705 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:11:01.705 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:11:01.895 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36322 778
17-03-18 02:11:02.045 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:11:02.085 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 02:11:02.085 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:11:02.085 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:02.085 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 02:11:02.095 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:11:02.095 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:02.095 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:02.095 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:11:02.095 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:02.105 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:11:02.225 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:11:02.235 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:11:02.235 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:11:02.235 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:11:02.235 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:11:02.235 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:11:02.235 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:11:02.235 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:11:02.235 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:11:02.235 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:11:02.425 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:11:02.425 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:11:02.425 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36322 150' command took 2 ms to send, 1311 ms to get response, and 1317 ms overall
17-03-18 02:11:02.635 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 02:11:02.635 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:11:02.635 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:02.635 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 02:11:02.635 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:11:02.635 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:02.635 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:11:02.635 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:11:02.635 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:11:02.635 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 02:11:02.645 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 02:11:02.685 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 02:11:02.685 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 02:11:02.725 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 02:11:02.725 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 02:11:02.725 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 02:11:02.725 -07 000000590 INF: FPGA: Recv EMCUR 
17-03-18 02:11:02.735 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:11:02.735 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 02:11:03.235 -07 000000462 INF: FPGA: Recv EMIN
17-03-18 02:11:03.235 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 02:11:03.235 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 02:11:03.235 -07 000000591 INF: FPGA: Recv EMCUR 
17-03-18 02:11:03.245 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:11:03.245 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:11:03.365 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.165485563367715. ------
17-03-18 02:11:03.365 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13987 mm
17-03-18 02:11:03.365 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:11:03.365 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:11:03.365 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 02:11:03.365 -07 000000579 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-18 02:11:03.365 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 30555, sync = True, waitForSettling = False)
17-03-18 02:11:03.365 -07 000000561 INF: Z Motor: Moving to -0.139872 mm, started at -0.165486 mm, distance = 25.61 um
17-03-18 02:11:03.375 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:03.375 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:11:03.375 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:11:03.375 -07 000000590 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:11:03.385 -07 000000561 INF: FPGA: Xmit ZDACW 30555\n [Z Motor]
17-03-18 02:11:03.385 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:11:03.385 -07 000000579 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:03.385 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:11:03.385 -07 000000579 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 02:11:03.385 -07 000000579 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 02:11:03.395 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:11:03.395 -07 000000561 INF: FPGA: 'ZDACW 30555' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:11:03.405 -07 000000579 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 02:11:03.415 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:11:03.415 -07 000000606 INF: FPGA: Recv ZDACR 30555
17-03-18 02:11:03.425 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:11:03.425 -07 000000561 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 02:11:03.595 -07 000000430 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:11:03.595 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-18 02:11:04.105 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 4.004458,
17-03-18 02:11:05.025 -07 000000626 INF: FPGA: Recv YMVTO 122703 23903
17-03-18 02:11:05.025 -07 000000579 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1643 ms overall
17-03-18 02:11:05.025 -07 000000579 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 02:11:05.025 -07 000000579 INF: Y Motor: To move from 74.832 to 59.913 (-14.919 mm) should take 23871 steps, but required 23903 steps (14.939 mm). Slippage = 0.020 mm (0.00%).
17-03-18 02:11:05.025 -07 000000579 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1643 ms, distance = 14.919 mm, average velocity = 9.080 mm/sec
17-03-18 02:11:06.465 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:11:06.465 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:11:07.875 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:07.875 -07 000000576 INF: FPGA: Recv YRDPOS 122697
17-03-18 02:11:07.885 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:11:07.885 -07 000000579 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:07.915 -07 000000579 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:11:07.915 -07 000000579 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 02:11:07.915 -07 000000579 INF: Y Motor: Moved to 59.9106 after 4549 ms
17-03-18 02:11:07.925 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139872 mm (DAC = 30555)
17-03-18 02:11:07.925 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:07.925 -07 000000512 INF: FPGA: Recv ZSGSRD 31063
17-03-18 02:11:07.935 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:07.935 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:07.935 -07 000000626 INF: FPGA: Recv ZSGSRD 31066
17-03-18 02:11:07.945 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:07.945 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:07.945 -07 000000576 INF: FPGA: Recv ZSGSRD 31066
17-03-18 02:11:07.955 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:07.955 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:07.955 -07 000000629 INF: FPGA: Recv ZSGSRD 31062
17-03-18 02:11:07.965 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:07.965 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:07.965 -07 000000591 INF: FPGA: Recv ZSGSRD 31055
17-03-18 02:11:07.975 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:07.975 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:07.975 -07 000000502 INF: FPGA: Recv ZSGSRD 31064
17-03-18 02:11:07.985 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:07.985 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:07.985 -07 000000461 INF: FPGA: Recv ZSGSRD 31070
17-03-18 02:11:07.995 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:07.995 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:07.995 -07 000000461 INF: FPGA: Recv ZSGSRD 31062
17-03-18 02:11:08.005 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:11:08.005 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:08.005 -07 000000430 INF: FPGA: Recv ZSGSRD 31063
17-03-18 02:11:08.015 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:08.015 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:08.015 -07 000000467 INF: FPGA: Recv ZSGSRD 31069
17-03-18 02:11:08.025 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:08.025 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:11:08.025 -07 000000455 INF: FPGA: Recv ZPIEZORD 26597
17-03-18 02:11:08.035 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:08.035 -07 000000462 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.662 V. Piezo Error = -9.8 V.
17-03-18 02:11:08.035 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.9 um, Read 10 ADC samples: Avg = 31064 (-139.1 uncal um), Error = 0.8 uncal um, Median = 31064 (-139.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 31055 (-139.0 uncal um), Max = 31070 (-139.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:11:08.035 -07 000000462 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31064, posNoise = 6, negNoise = 9
17-03-18 02:11:08.035 -07 000000462 INF: Z Motor: After move to -0.139872, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:11:08.035 -07 000000462 INF: Z Motor: Settle wait time = 4552 ms, measure time = 110 ms (allowed 150 ms), total time = 4662 ms
17-03-18 02:11:08.035 -07 000000462 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:11:08.075 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4705 ms
17-03-18 02:11:08.075 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:11:08.075 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:11:08.075 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:11:08.075 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:11:08.075 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:11:08.075 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:11:08.075 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:11:08.075 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:11:08.075 -07 000000590 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 02:11:08.095 -07 000000590 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-18 02:11:08.095 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:11:08.105 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:11:08.105 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:11:08.105 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:11:08.105 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 31 ms.
17-03-18 02:11:08.115 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:11:08.155 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:11:08.455 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:11:08.455 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:11:08.455 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:11:08.455 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:11:08.495 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:11:08.495 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 02:11:08.495 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 02:11:08.575 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 02:11:08.575 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:08.575 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:11:08.575 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 02:11:08.595 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:11:08.595 -07 000000579 INF: Image SNR check: start
17-03-18 02:11:08.595 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:11:08.605 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:11:08.605 -07 000000430 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:11:08.615 -07 000000579 INF: Image SNR check: pass  [peak (Max-Min)=154.85]
17-03-18 02:11:08.615 -07 000000579 INF: Autofocus start
17-03-18 02:11:08.615 -07 000000579 INF: MeasureProfile start
17-03-18 02:11:08.625 -07 000000579 INF: MeasureProfile done
17-03-18 02:11:08.625 -07 000000579 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 02:11:08.625 -07 000000579 INF: Autofocus finished
17-03-18 02:11:08.805 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:11:08.805 -07 000000430 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:11:08.805 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.139885077982797. ----------
17-03-18 02:11:08.805 -07 000000610 INF: Cycle	96	Tile	1	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:11:08.815 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29032, sync = True, waitForSettling = True)
17-03-18 02:11:08.815 -07 000000610 INF: Z Motor: Moving to -0.132900 mm, started at -0.139885 mm, distance = 6.99 um
17-03-18 02:11:08.815 -07 000000610 INF: FPGA: Xmit ZDACW 29032\n [Z Motor]
17-03-18 02:11:08.815 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:11:08.825 -07 000000610 INF: FPGA: 'ZDACW 29032' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:11:08.825 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:11:08.825 -07 000000576 INF: FPGA: Recv ZDACR 29032
17-03-18 02:11:08.835 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:08.835 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:11:08.985 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:08.985 -07 000000462 INF: FPGA: Recv ZSGSRD 29979
17-03-18 02:11:08.995 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:11:08.995 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:08.995 -07 000000561 INF: FPGA: Recv ZSGSRD 29983
17-03-18 02:11:09.005 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:09.005 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:09.005 -07 000000626 INF: FPGA: Recv ZSGSRD 29972
17-03-18 02:11:09.015 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:09.015 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:09.015 -07 000000502 INF: FPGA: Recv ZSGSRD 29976
17-03-18 02:11:09.025 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:09.025 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:09.025 -07 000000455 INF: FPGA: Recv ZSGSRD 29977
17-03-18 02:11:09.035 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:09.035 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:09.035 -07 000000462 INF: FPGA: Recv ZSGSRD 29979
17-03-18 02:11:09.045 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:09.045 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:09.045 -07 000000461 INF: FPGA: Recv ZSGSRD 29974
17-03-18 02:11:09.055 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:09.055 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:09.055 -07 000000626 INF: FPGA: Recv ZSGSRD 29976
17-03-18 02:11:09.065 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:09.065 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:09.065 -07 000000561 INF: FPGA: Recv ZSGSRD 29974
17-03-18 02:11:09.075 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:09.075 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:09.075 -07 000000455 INF: FPGA: Recv ZSGSRD 29980
17-03-18 02:11:09.085 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:09.085 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:11:09.085 -07 000000606 INF: FPGA: Recv ZPIEZORD 25436
17-03-18 02:11:09.095 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:09.095 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.430 V. Piezo Error = -10.0 V.
17-03-18 02:11:09.095 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.9 um, Read 10 ADC samples: Avg = 29977 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29976 (-132.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29972 (-132.1 uncal um), Max = 29983 (-132.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:11:09.095 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29977, posNoise = 6, negNoise = 5
17-03-18 02:11:09.095 -07 000000610 INF: Z Motor: After move to -0.132900, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:11:09.095 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:11:09.095 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:11:09.095 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:11:09.095 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:11:09.095 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:11:09.095 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:11:09.095 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:11:09.095 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:11:09.095 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:11:09.095 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:11:09.095 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:11:09.095 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:11:09.095 -07 000000590 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 02:11:09.105 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:11:09.105 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:11:09.115 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:11:09.115 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:11:09.125 -07 000000590 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 02:11:09.125 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:11:09.125 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:11:09.125 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:11:09.135 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:11:09.135 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 36 ms.
17-03-18 02:11:09.135 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 29209 150\n [Camera]
17-03-18 02:11:09.335 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:11:09.465 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 4.000345,
17-03-18 02:11:09.725 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:11:09.725 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:11:09.735 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:11:09.735 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:11:09.735 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:11:09.735 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:11:09.735 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:11:09.735 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:11:09.735 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:11:09.735 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:11:09.925 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29209 778
17-03-18 02:11:10.075 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:11:10.115 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 02:11:10.115 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:11:10.115 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:10.115 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 02:11:10.115 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 02:11:10.115 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:10.125 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:10.125 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:11:10.125 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:10.125 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:11:10.265 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:11:10.265 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:11:10.265 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:11:10.265 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:11:10.265 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:11:10.265 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:11:10.384 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:11:10.384 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:11:10.384 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:11:10.384 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 02:11:10.454 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:11:10.454 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:11:10.454 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 29209 150' command took 2 ms to send, 1313 ms to get response, and 1317 ms overall
17-03-18 02:11:10.454 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:11:10.454 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.132901959384703. ------
17-03-18 02:11:10.454 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:11:10.454 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13908 mm
17-03-18 02:11:10.454 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:11:10.464 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:11:10.464 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:11:10.464 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:11:10.464 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 02:11:10.464 -07 000000430 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-18 02:11:10.464 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30383, sync = True, waitForSettling = False)
17-03-18 02:11:10.464 -07 000000569 INF: Z Motor: Moving to -0.139084 mm, started at -0.132902 mm, distance = -6.18 um
17-03-18 02:11:10.474 -07 000000569 INF: FPGA: Xmit ZDACW 30383\n [Z Motor]
17-03-18 02:11:10.474 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:11:10.484 -07 000000569 INF: FPGA: 'ZDACW 30383' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 02:11:10.484 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:10.484 -07 000000462 INF: FPGA: Recv YRDPOS 122697
17-03-18 02:11:10.494 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:11:10.494 -07 000000430 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:10.494 -07 000000430 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:11:10.494 -07 000000430 INF: Y Motor: Moving 1331 steps2
17-03-18 02:11:10.494 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:11:10.494 -07 000000502 INF: FPGA: Recv ZDACR 30383
17-03-18 02:11:10.504 -07 000000569 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:11:10.504 -07 000000569 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 02:11:10.504 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:11:10.664 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:11:10.664 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 203 ms overall
17-03-18 02:11:10.784 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 02:11:10.784 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-18 02:11:10.784 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:10.784 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 02:11:10.784 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:11:10.784 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:10.784 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:10.784 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-18 02:11:10.784 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:11:10.794 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 525 ms.
17-03-18 02:11:10.884 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 02:11:10.884 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 390 ms overall
17-03-18 02:11:10.914 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:10.924 -07 000000590 INF: FPGA: Recv YRDPOS 124381
17-03-18 02:11:10.924 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:11:10.924 -07 000000430 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:10.924 -07 000000430 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 02:11:10.924 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.832 mm, average velocity = 2.128 mm/sec
17-03-18 02:11:11.464 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:11:11.464 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:11:11.874 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:11.874 -07 000000424 INF: FPGA: Recv YRDPOS 124381
17-03-18 02:11:11.884 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:11:11.884 -07 000000430 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:11.904 -07 000000430 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:11:11.904 -07 000000430 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:11:11.904 -07 000000430 INF: Y Motor: Moved to 60.7329 after 1446 ms (table move)
17-03-18 02:11:11.914 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139084 mm (DAC = 30383)
17-03-18 02:11:11.914 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:11.914 -07 000000579 INF: FPGA: Recv ZSGSRD 30942
17-03-18 02:11:11.924 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:11:11.924 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:11.924 -07 000000606 INF: FPGA: Recv ZSGSRD 30940
17-03-18 02:11:11.934 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:11.934 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:11.934 -07 000000462 INF: FPGA: Recv ZSGSRD 30936
17-03-18 02:11:11.944 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:11.944 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:11.944 -07 000000561 INF: FPGA: Recv ZSGSRD 30939
17-03-18 02:11:11.954 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:11.954 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:11.954 -07 000000626 INF: FPGA: Recv ZSGSRD 30935
17-03-18 02:11:11.964 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:11.964 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:11.964 -07 000000512 INF: FPGA: Recv ZSGSRD 30938
17-03-18 02:11:11.974 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:11.974 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:11.974 -07 000000569 INF: FPGA: Recv ZSGSRD 30944
17-03-18 02:11:11.984 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:11:11.984 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:11.984 -07 000000430 INF: FPGA: Recv ZSGSRD 30944
17-03-18 02:11:11.994 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:11.994 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:11.994 -07 000000579 INF: FPGA: Recv ZSGSRD 30937
17-03-18 02:11:12.004 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:12.004 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:12.004 -07 000000462 INF: FPGA: Recv ZSGSRD 30942
17-03-18 02:11:12.014 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:12.014 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:11:12.014 -07 000000502 INF: FPGA: Recv ZPIEZORD 26750
17-03-18 02:11:12.024 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:12.024 -07 000000461 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.636 V. Piezo Error = -9.2 V.
17-03-18 02:11:12.024 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30940 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30940 (-138.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30935 (-138.3 uncal um), Max = 30944 (-138.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:11:12.024 -07 000000461 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30940, posNoise = 4, negNoise = 5
17-03-18 02:11:12.024 -07 000000461 INF: Z Motor: After move to -0.139084, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:11:12.024 -07 000000461 INF: Z Motor: Settle wait time = 1449 ms, measure time = 108 ms (allowed 150 ms), total time = 1557 ms
17-03-18 02:11:12.024 -07 000000461 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:11:12.074 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 02:11:12.074 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:11:12.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:11:12.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:11:12.074 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:11:12.074 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:11:12.074 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:11:12.074 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:11:12.074 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:11:12.074 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:11:12.084 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:11:12.084 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:11:12.094 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:11:12.094 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:11:12.094 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:11:12.134 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:11:12.434 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:11:12.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:11:12.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:11:12.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 02:11:12.474 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:11:12.474 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 02:11:12.474 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 02:11:12.564 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:11:12.564 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:12.564 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:11:12.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 02:11:12.674 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:11:12.674 -07 000000424 INF: Autofocus start
17-03-18 02:11:12.674 -07 000000424 INF: MeasureProfile start
17-03-18 02:11:12.674 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:11:12.684 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:11:12.684 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:11:12.684 -07 000000424 INF: MeasureProfile done
17-03-18 02:11:12.684 -07 000000424 INF: X=32  Z correction [um]=0.1299841
17-03-18 02:11:12.684 -07 000000424 INF: Autofocus finished
17-03-18 02:11:12.884 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:11:12.884 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:11:12.884 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.139088475677219. ----------
17-03-18 02:11:12.884 -07 000000610 INF: Cycle	96	Tile	2	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:11:12.894 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28924, sync = True, waitForSettling = True)
17-03-18 02:11:12.894 -07 000000610 INF: Z Motor: Moving to -0.132406 mm, started at -0.139088 mm, distance = 6.68 um
17-03-18 02:11:12.894 -07 000000610 INF: FPGA: Xmit ZDACW 28924\n [Z Motor]
17-03-18 02:11:12.894 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:11:12.904 -07 000000610 INF: FPGA: 'ZDACW 28924' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:12.904 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:11:12.904 -07 000000502 INF: FPGA: Recv ZDACR 28924
17-03-18 02:11:12.914 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:12.914 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:11:13.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:13.064 -07 000000591 INF: FPGA: Recv ZSGSRD 29894
17-03-18 02:11:13.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:11:13.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:13.074 -07 000000561 INF: FPGA: Recv ZSGSRD 29908
17-03-18 02:11:13.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:13.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:13.084 -07 000000579 INF: FPGA: Recv ZSGSRD 29905
17-03-18 02:11:13.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:13.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:13.094 -07 000000430 INF: FPGA: Recv ZSGSRD 29900
17-03-18 02:11:13.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:13.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:13.104 -07 000000512 INF: FPGA: Recv ZSGSRD 29895
17-03-18 02:11:13.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:13.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:13.114 -07 000000462 INF: FPGA: Recv ZSGSRD 29903
17-03-18 02:11:13.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:13.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:13.124 -07 000000455 INF: FPGA: Recv ZSGSRD 29903
17-03-18 02:11:13.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:13.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:13.134 -07 000000576 INF: FPGA: Recv ZSGSRD 29900
17-03-18 02:11:13.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:13.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:13.144 -07 000000467 INF: FPGA: Recv ZSGSRD 29905
17-03-18 02:11:13.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:13.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:13.154 -07 000000512 INF: FPGA: Recv ZSGSRD 29898
17-03-18 02:11:13.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:13.164 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:11:13.164 -07 000000462 INF: FPGA: Recv ZPIEZORD 25366
17-03-18 02:11:13.174 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:13.174 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.414 V. Piezo Error = -9.9 V.
17-03-18 02:11:13.174 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29901 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29902 (-131.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29894 (-131.6 uncal um), Max = 29908 (-131.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:11:13.174 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29901, posNoise = 7, negNoise = 7
17-03-18 02:11:13.174 -07 000000610 INF: Z Motor: After move to -0.132406, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:11:13.174 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:11:13.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:11:13.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:11:13.174 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:11:13.174 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:11:13.174 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:11:13.174 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:11:13.174 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:11:13.174 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:11:13.174 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:11:13.174 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:11:13.174 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:11:13.174 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:11:13.184 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:11:13.184 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:11:13.184 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:11:13.184 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:11:13.194 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:11:13.194 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:11:13.194 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:11:13.194 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:11:13.194 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 29100 150\n [Camera]
17-03-18 02:11:13.394 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:11:13.794 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:11:13.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:11:13.794 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:11:13.794 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:11:13.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:11:13.794 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:11:13.794 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:11:13.794 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:11:13.794 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:11:13.794 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 02:11:13.984 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29100 778
17-03-18 02:11:14.134 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:11:14.194 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:11:14.194 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:11:14.194 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:14.194 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:11:14.194 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:11:14.194 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:14.194 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:11:14.194 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:11:14.204 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:11:14.204 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:11:14.324 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:11:14.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:11:14.324 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:11:14.324 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:11:14.324 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 02:11:14.324 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:11:14.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:11:14.324 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:11:14.324 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:11:14.324 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 02:11:14.514 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:11:14.514 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:11:14.514 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 29100 150' command took 2 ms to send, 1306 ms to get response, and 1316 ms overall
17-03-18 02:11:14.514 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:11:14.514 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.132413719261929. ------
17-03-18 02:11:14.524 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:11:14.524 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13912 mm
17-03-18 02:11:14.524 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:11:14.524 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 02:11:14.524 -07 000000590 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-18 02:11:14.524 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:11:14.524 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30390, sync = True, waitForSettling = False)
17-03-18 02:11:14.524 -07 000000502 INF: Z Motor: Moving to -0.139117 mm, started at -0.132414 mm, distance = -6.70 um
17-03-18 02:11:14.534 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:11:14.534 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:14.534 -07 000000455 INF: FPGA: Recv YRDPOS 124382
17-03-18 02:11:14.544 -07 000000502 INF: FPGA: Xmit ZDACW 30390\n [Z Motor]
17-03-18 02:11:14.544 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:11:14.544 -07 000000590 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:14.544 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:11:14.544 -07 000000590 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:11:14.544 -07 000000590 INF: Y Motor: Moving 1343 steps-20
17-03-18 02:11:14.554 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:11:14.554 -07 000000502 INF: FPGA: 'ZDACW 30390' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:11:14.564 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:11:14.574 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:11:14.574 -07 000000444 INF: FPGA: Recv ZDACR 30390
17-03-18 02:11:14.584 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:11:14.584 -07 000000502 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 02:11:14.714 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 02:11:14.714 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:11:14.714 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:14.714 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 02:11:14.714 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:11:14.714 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:14.714 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:11:14.724 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:11:14.724 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:11:14.724 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:11:14.754 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:11:14.754 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:11:14.824 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 3.983999,
17-03-18 02:11:14.944 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 02:11:14.944 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 394 ms overall
17-03-18 02:11:14.984 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:14.984 -07 000000591 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:11:14.994 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:11:14.994 -07 000000590 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:14.994 -07 000000590 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 02:11:14.994 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.131 mm/sec
17-03-18 02:11:15.944 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:15.944 -07 000000561 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:11:15.954 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:15.954 -07 000000590 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:15.974 -07 000000590 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:11:15.974 -07 000000590 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:11:15.974 -07 000000590 INF: Y Motor: Moved to 61.5640 after 1454 ms (table move)
17-03-18 02:11:15.984 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139117 mm (DAC = 30390)
17-03-18 02:11:15.984 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:15.984 -07 000000467 INF: FPGA: Recv ZSGSRD 30949
17-03-18 02:11:15.994 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:11:15.994 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:15.994 -07 000000561 INF: FPGA: Recv ZSGSRD 30941
17-03-18 02:11:16.004 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:16.004 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:16.004 -07 000000591 INF: FPGA: Recv ZSGSRD 30939
17-03-18 02:11:16.014 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:16.014 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:16.014 -07 000000512 INF: FPGA: Recv ZSGSRD 30939
17-03-18 02:11:16.024 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:16.024 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:16.024 -07 000000467 INF: FPGA: Recv ZSGSRD 30946
17-03-18 02:11:16.034 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:16.034 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:16.034 -07 000000561 INF: FPGA: Recv ZSGSRD 30951
17-03-18 02:11:16.044 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:16.044 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:16.044 -07 000000430 INF: FPGA: Recv ZSGSRD 30948
17-03-18 02:11:16.054 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:16.054 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:16.054 -07 000000591 INF: FPGA: Recv ZSGSRD 30951
17-03-18 02:11:16.064 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:16.064 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:16.064 -07 000000455 INF: FPGA: Recv ZSGSRD 30940
17-03-18 02:11:16.074 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:16.074 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:16.074 -07 000000579 INF: FPGA: Recv ZSGSRD 30945
17-03-18 02:11:16.084 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:16.084 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:11:16.084 -07 000000512 INF: FPGA: Recv ZPIEZORD 26827
17-03-18 02:11:16.094 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:16.094 -07 000000576 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.637 V. Piezo Error = -9.1 V.
17-03-18 02:11:16.094 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30945 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30946 (-138.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30939 (-138.3 uncal um), Max = 30951 (-138.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:11:16.094 -07 000000576 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30945, posNoise = 6, negNoise = 6
17-03-18 02:11:16.094 -07 000000576 INF: Z Motor: After move to -0.139117, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:11:16.094 -07 000000576 INF: Z Motor: Settle wait time = 1456 ms, measure time = 108 ms (allowed 150 ms), total time = 1564 ms
17-03-18 02:11:16.094 -07 000000576 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:11:16.144 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 02:11:16.144 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:11:16.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:11:16.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:11:16.144 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:11:16.144 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:11:16.144 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:11:16.144 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:11:16.144 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:11:16.144 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:11:16.154 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:11:16.154 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:11:16.154 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:11:16.154 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:11:16.154 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:11:16.204 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:11:16.464 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:11:16.464 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:11:16.504 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:11:16.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:11:16.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:11:16.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1096956120, 0x0, 559484976) start.
17-03-18 02:11:16.544 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:11:16.544 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 02:11:16.544 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 02:11:16.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1096956120, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:11:16.624 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:16.624 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:11:16.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:11:16.644 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:11:16.644 -07 000000461 INF: Autofocus start
17-03-18 02:11:16.644 -07 000000461 INF: MeasureProfile start
17-03-18 02:11:16.644 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:11:16.654 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:11:16.654 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:11:16.664 -07 000000461 INF: MeasureProfile done
17-03-18 02:11:16.664 -07 000000461 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:11:16.664 -07 000000461 INF: Autofocus finished
17-03-18 02:11:16.854 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:11:16.854 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:11:16.854 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139120596737928. ----------
17-03-18 02:11:16.854 -07 000000610 INF: Cycle	96	Tile	3	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:11:16.864 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28898, sync = True, waitForSettling = True)
17-03-18 02:11:16.864 -07 000000610 INF: Z Motor: Moving to -0.132287 mm, started at -0.139121 mm, distance = 6.83 um
17-03-18 02:11:16.864 -07 000000610 INF: FPGA: Xmit ZDACW 28898\n [Z Motor]
17-03-18 02:11:16.864 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:11:16.874 -07 000000610 INF: FPGA: 'ZDACW 28898' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:11:16.874 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:11:16.874 -07 000000444 INF: FPGA: Recv ZDACR 28898
17-03-18 02:11:16.884 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:16.884 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:11:17.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:17.034 -07 000000591 INF: FPGA: Recv ZSGSRD 29894
17-03-18 02:11:17.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 5 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:11:17.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:17.044 -07 000000455 INF: FPGA: Recv ZSGSRD 29883
17-03-18 02:11:17.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:17.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:17.054 -07 000000629 INF: FPGA: Recv ZSGSRD 29880
17-03-18 02:11:17.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:17.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:17.064 -07 000000569 INF: FPGA: Recv ZSGSRD 29879
17-03-18 02:11:17.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:17.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:17.074 -07 000000444 INF: FPGA: Recv ZSGSRD 29881
17-03-18 02:11:17.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:17.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:17.084 -07 000000591 INF: FPGA: Recv ZSGSRD 29889
17-03-18 02:11:17.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:17.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:17.094 -07 000000462 INF: FPGA: Recv ZSGSRD 29884
17-03-18 02:11:17.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:17.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:17.104 -07 000000430 INF: FPGA: Recv ZSGSRD 29888
17-03-18 02:11:17.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:17.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:17.114 -07 000000569 INF: FPGA: Recv ZSGSRD 29885
17-03-18 02:11:17.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:11:17.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:17.124 -07 000000444 INF: FPGA: Recv ZSGSRD 29882
17-03-18 02:11:17.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:17.134 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:11:17.134 -07 000000579 INF: FPGA: Recv ZPIEZORD 25420
17-03-18 02:11:17.144 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:17.144 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.410 V. Piezo Error = -9.8 V.
17-03-18 02:11:17.144 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29884 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29884 (-131.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29879 (-131.5 uncal um), Max = 29894 (-131.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:11:17.144 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29884, posNoise = 10, negNoise = 5
17-03-18 02:11:17.144 -07 000000610 INF: Z Motor: After move to -0.132287, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:11:17.144 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:11:17.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:11:17.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:11:17.144 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:11:17.144 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:11:17.144 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:11:17.144 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:11:17.144 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:11:17.144 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:11:17.144 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 02:11:17.144 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:11:17.144 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:11:17.144 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:11:17.154 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:11:17.154 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:11:17.154 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:11:17.154 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:11:17.164 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 02:11:17.164 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:11:17.164 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:11:17.164 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 02:11:17.174 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 29074 150\n [Camera]
17-03-18 02:11:17.374 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:11:17.764 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:11:17.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:11:17.764 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:11:17.764 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:11:17.764 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:11:17.764 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:11:17.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:11:17.764 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:11:17.764 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:11:17.764 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:11:17.954 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29074 778
17-03-18 02:11:18.104 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:11:18.154 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 02:11:18.154 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:11:18.154 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:18.154 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 02:11:18.154 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:11:18.154 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:18.164 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:18.164 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:18.164 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:11:18.164 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:11:18.294 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:11:18.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:11:18.294 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:11:18.294 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:11:18.294 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:11:18.294 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:11:18.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:11:18.294 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:11:18.294 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:11:18.294 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:11:18.484 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:11:18.484 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:11:18.484 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 29074 150' command took 2 ms to send, 1307 ms to get response, and 1317 ms overall
17-03-18 02:11:18.494 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:11:18.494 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132304507655519. ------
17-03-18 02:11:18.494 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:11:18.494 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13871 mm
17-03-18 02:11:18.494 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:11:18.494 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 30300, sync = True, waitForSettling = False)
17-03-18 02:11:18.494 -07 000000430 INF: Z Motor: Moving to -0.138705 mm, started at -0.132305 mm, distance = -6.40 um
17-03-18 02:11:18.494 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 02:11:18.494 -07 000000590 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-18 02:11:18.504 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:11:18.504 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:11:18.504 -07 000000430 INF: FPGA: Xmit ZDACW 30300\n [Z Motor]
17-03-18 02:11:18.504 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:11:18.514 -07 000000430 INF: FPGA: 'ZDACW 30300' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:11:18.514 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:11:18.524 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:18.524 -07 000000467 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:11:18.534 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 02:11:18.534 -07 000000590 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:18.534 -07 000000590 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:11:18.534 -07 000000590 INF: Y Motor: Moving 1342 steps-18
17-03-18 02:11:18.534 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:11:18.534 -07 000000455 INF: FPGA: Recv ZDACR 30300
17-03-18 02:11:18.544 -07 000000430 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:11:18.544 -07 000000430 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 02:11:18.544 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:11:18.694 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:11:18.694 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:11:18.694 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:18.704 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:11:18.704 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:11:18.704 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:18.704 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:11:18.704 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:11:18.704 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:11:18.714 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:11:18.714 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:11:18.714 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 02:11:18.914 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 02:11:18.914 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:11:18.964 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:18.964 -07 000000502 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:11:18.974 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:11:18.974 -07 000000590 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:18.974 -07 000000590 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 02:11:18.974 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.167 mm/sec
17-03-18 02:11:19.924 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:19.924 -07 000000591 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:11:19.934 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:11:19.934 -07 000000590 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:19.954 -07 000000590 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:11:19.954 -07 000000590 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:11:19.954 -07 000000590 INF: Y Motor: Moved to 62.3955 after 1457 ms (table move)
17-03-18 02:11:19.964 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138705 mm (DAC = 30300)
17-03-18 02:11:19.964 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:19.964 -07 000000629 INF: FPGA: Recv ZSGSRD 30883
17-03-18 02:11:19.974 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:19.974 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:19.974 -07 000000591 INF: FPGA: Recv ZSGSRD 30876
17-03-18 02:11:19.984 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:19.984 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:19.984 -07 000000569 INF: FPGA: Recv ZSGSRD 30886
17-03-18 02:11:19.994 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:19.994 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:19.994 -07 000000576 INF: FPGA: Recv ZSGSRD 30878
17-03-18 02:11:20.004 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:20.004 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:20.004 -07 000000629 INF: FPGA: Recv ZSGSRD 30883
17-03-18 02:11:20.014 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:20.014 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:20.014 -07 000000462 INF: FPGA: Recv ZSGSRD 30877
17-03-18 02:11:20.024 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:20.024 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:20.024 -07 000000576 INF: FPGA: Recv ZSGSRD 30875
17-03-18 02:11:20.034 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:20.034 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:20.034 -07 000000591 INF: FPGA: Recv ZSGSRD 30877
17-03-18 02:11:20.044 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:20.044 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:20.044 -07 000000461 INF: FPGA: Recv ZSGSRD 30883
17-03-18 02:11:20.054 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:20.054 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:20.054 -07 000000424 INF: FPGA: Recv ZSGSRD 30891
17-03-18 02:11:20.064 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:20.064 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:11:20.064 -07 000000455 INF: FPGA: Recv ZPIEZORD 26672
17-03-18 02:11:20.074 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:20.074 -07 000000561 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.623 V. Piezo Error = -9.3 V.
17-03-18 02:11:20.074 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30881 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30880 (-137.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30875 (-137.9 uncal um), Max = 30891 (-138.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:11:20.074 -07 000000561 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30881, posNoise = 10, negNoise = 6
17-03-18 02:11:20.074 -07 000000561 INF: Z Motor: After move to -0.138705, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:11:20.074 -07 000000561 INF: Z Motor: Settle wait time = 1461 ms, measure time = 110 ms (allowed 150 ms), total time = 1571 ms
17-03-18 02:11:20.074 -07 000000561 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:11:20.114 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 02:11:20.114 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:11:20.114 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:11:20.114 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:11:20.114 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:11:20.114 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:11:20.114 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:11:20.114 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:11:20.114 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:11:20.114 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:11:20.124 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:11:20.124 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:11:20.124 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:11:20.124 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:11:20.134 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:11:20.174 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 02:11:20.184 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 3.96762,
17-03-18 02:11:20.474 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:11:20.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:11:20.474 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:11:20.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-18 02:11:20.514 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:11:20.514 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 02:11:20.514 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:11:20.594 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 02:11:20.594 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:20.594 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:11:20.594 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:11:20.614 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:11:20.614 -07 000000606 INF: Autofocus start
17-03-18 02:11:20.614 -07 000000606 INF: MeasureProfile start
17-03-18 02:11:20.614 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:11:20.624 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:11:20.624 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:11:20.624 -07 000000606 INF: MeasureProfile done
17-03-18 02:11:20.624 -07 000000606 INF: X=32  Z correction [um]=0.1299841
17-03-18 02:11:20.624 -07 000000606 INF: Autofocus finished
17-03-18 02:11:20.824 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:11:20.824 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:11:20.824 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.138709447160855. ----------
17-03-18 02:11:20.824 -07 000000610 INF: Cycle	96	Tile	4	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:11:20.834 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28841, sync = True, waitForSettling = True)
17-03-18 02:11:20.834 -07 000000610 INF: Z Motor: Moving to -0.132026 mm, started at -0.138709 mm, distance = 6.68 um
17-03-18 02:11:20.834 -07 000000610 INF: FPGA: Xmit ZDACW 28841\n [Z Motor]
17-03-18 02:11:20.834 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:11:20.844 -07 000000610 INF: FPGA: 'ZDACW 28841' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:20.844 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:11:20.844 -07 000000576 INF: FPGA: Recv ZDACR 28841
17-03-18 02:11:20.854 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:20.854 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:11:21.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:21.004 -07 000000590 INF: FPGA: Recv ZSGSRD 29840
17-03-18 02:11:21.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:11:21.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:21.014 -07 000000626 INF: FPGA: Recv ZSGSRD 29836
17-03-18 02:11:21.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:21.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:21.024 -07 000000455 INF: FPGA: Recv ZSGSRD 29843
17-03-18 02:11:21.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:21.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:21.034 -07 000000591 INF: FPGA: Recv ZSGSRD 29846
17-03-18 02:11:21.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:21.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:21.044 -07 000000569 INF: FPGA: Recv ZSGSRD 29838
17-03-18 02:11:21.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:21.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:21.054 -07 000000444 INF: FPGA: Recv ZSGSRD 29839
17-03-18 02:11:21.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:21.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:21.064 -07 000000512 INF: FPGA: Recv ZSGSRD 29840
17-03-18 02:11:21.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:21.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:21.074 -07 000000629 INF: FPGA: Recv ZSGSRD 29828
17-03-18 02:11:21.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:21.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:21.084 -07 000000606 INF: FPGA: Recv ZSGSRD 29835
17-03-18 02:11:21.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:21.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:21.094 -07 000000467 INF: FPGA: Recv ZSGSRD 29848
17-03-18 02:11:21.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:21.104 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:11:21.104 -07 000000626 INF: FPGA: Recv ZPIEZORD 25384
17-03-18 02:11:21.114 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:21.114 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.401 V. Piezo Error = -9.8 V.
17-03-18 02:11:21.114 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29839 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29840 (-131.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 29828 (-131.2 uncal um), Max = 29848 (-131.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 02:11:21.114 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29839, posNoise = 9, negNoise = 11
17-03-18 02:11:21.114 -07 000000610 INF: Z Motor: After move to -0.132026, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:11:21.114 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:11:21.114 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:11:21.114 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:11:21.114 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:11:21.114 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:11:21.114 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:11:21.114 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:11:21.114 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:11:21.114 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:11:21.114 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:11:21.114 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:11:21.114 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:11:21.114 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:11:21.124 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:11:21.124 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:11:21.124 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:11:21.124 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:11:21.124 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:11:21.124 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:11:21.124 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:11:21.124 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:11:21.134 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 29018 150\n [Camera]
17-03-18 02:11:21.334 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:11:21.464 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:11:21.464 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:11:21.724 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:11:21.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:11:21.724 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:11:21.724 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:11:21.724 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 02:11:21.724 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:11:21.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:11:21.724 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:11:21.724 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:11:21.724 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 02:11:21.914 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29018 778
17-03-18 02:11:22.074 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:11:22.104 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:11:22.104 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:11:22.104 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:22.104 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 02:11:22.104 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:11:22.104 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:22.104 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:11:22.114 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:11:22.114 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:11:22.114 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:11:22.254 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:11:22.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:11:22.254 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:11:22.254 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:11:22.254 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 02:11:22.264 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:11:22.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:11:22.264 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:11:22.264 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:11:22.264 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 02:11:22.444 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:11:22.454 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:11:22.454 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 29018 150' command took 2 ms to send, 1309 ms to get response, and 1316 ms overall
17-03-18 02:11:22.584 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:11:22.584 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.13201541810914. ------
17-03-18 02:11:22.584 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:11:22.584 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13886 mm
17-03-18 02:11:22.584 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:11:22.584 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 02:11:22.584 -07 000000502 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 02:11:22.584 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:11:22.594 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:22.594 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:11:22.594 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 30333, sync = True, waitForSettling = False)
17-03-18 02:11:22.594 -07 000000512 INF: Z Motor: Moving to -0.138856 mm, started at -0.132015 mm, distance = -6.84 um
17-03-18 02:11:22.594 -07 000000579 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:11:22.604 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:11:22.604 -07 000000502 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:22.604 -07 000000502 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:11:22.604 -07 000000502 INF: Y Motor: Moving 1339 steps-15
17-03-18 02:11:22.604 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:11:22.614 -07 000000512 INF: FPGA: Xmit ZDACW 30333\n [Z Motor]
17-03-18 02:11:22.614 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:11:22.624 -07 000000512 INF: FPGA: 'ZDACW 30333' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:11:22.624 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:11:22.634 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:11:22.634 -07 000000430 INF: FPGA: Recv ZDACR 30333
17-03-18 02:11:22.644 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:11:22.644 -07 000000512 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 02:11:22.664 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 02:11:22.664 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 02:11:22.664 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:22.664 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 408 ms.
17-03-18 02:11:22.664 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 02:11:22.664 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:22.674 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:11:22.674 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:11:22.674 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-18 02:11:22.674 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 02:11:22.804 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:11:22.804 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 02:11:22.994 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 02:11:22.994 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:11:23.044 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:23.044 -07 000000424 INF: FPGA: Recv YRDPOS 129483
17-03-18 02:11:23.054 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:11:23.054 -07 000000502 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:23.054 -07 000000502 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 02:11:23.054 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.837 mm, average velocity = 2.103 mm/sec
17-03-18 02:11:24.004 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:24.004 -07 000000591 INF: FPGA: Recv YRDPOS 129483
17-03-18 02:11:24.014 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:11:24.014 -07 000000502 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:24.034 -07 000000502 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:11:24.034 -07 000000502 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:11:24.034 -07 000000502 INF: Y Motor: Moved to 63.2241 after 1448 ms (table move)
17-03-18 02:11:24.044 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138856 mm (DAC = 30333)
17-03-18 02:11:24.044 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:24.044 -07 000000430 INF: FPGA: Recv ZSGSRD 30908
17-03-18 02:11:24.054 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:11:24.054 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:24.054 -07 000000424 INF: FPGA: Recv ZSGSRD 30905
17-03-18 02:11:24.064 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:24.064 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:24.064 -07 000000561 INF: FPGA: Recv ZSGSRD 30910
17-03-18 02:11:24.074 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:24.074 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:24.074 -07 000000569 INF: FPGA: Recv ZSGSRD 30899
17-03-18 02:11:24.084 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:24.084 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:24.084 -07 000000576 INF: FPGA: Recv ZSGSRD 30909
17-03-18 02:11:24.094 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:24.094 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:24.094 -07 000000512 INF: FPGA: Recv ZSGSRD 30903
17-03-18 02:11:24.104 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:24.104 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:24.104 -07 000000561 INF: FPGA: Recv ZSGSRD 30904
17-03-18 02:11:24.114 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:24.114 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:24.114 -07 000000579 INF: FPGA: Recv ZSGSRD 30903
17-03-18 02:11:24.124 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:24.124 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:24.124 -07 000000424 INF: FPGA: Recv ZSGSRD 30902
17-03-18 02:11:24.134 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:24.134 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:24.134 -07 000000502 INF: FPGA: Recv ZSGSRD 30907
17-03-18 02:11:24.144 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:24.144 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:11:24.144 -07 000000462 INF: FPGA: Recv ZPIEZORD 26776
17-03-18 02:11:24.154 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:24.154 -07 000000461 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.629 V. Piezo Error = -9.1 V.
17-03-18 02:11:24.154 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30905 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30904 (-138.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30899 (-138.0 uncal um), Max = 30910 (-138.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:11:24.154 -07 000000461 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30905, posNoise = 5, negNoise = 6
17-03-18 02:11:24.154 -07 000000461 INF: Z Motor: After move to -0.138856, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:11:24.154 -07 000000461 INF: Z Motor: Settle wait time = 1451 ms, measure time = 109 ms (allowed 150 ms), total time = 1560 ms
17-03-18 02:11:24.154 -07 000000461 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:11:24.204 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 02:11:24.204 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:11:24.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:11:24.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:11:24.204 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:11:24.204 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:11:24.204 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:11:24.204 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:11:24.204 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:11:24.204 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:11:24.214 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:11:24.214 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:11:24.214 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:11:24.214 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:11:24.224 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:11:24.264 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:11:24.564 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:11:24.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:11:24.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:11:24.564 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:11:24.604 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:11:24.604 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 02:11:24.604 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:11:24.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:11:24.684 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:24.684 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:11:24.684 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:11:24.704 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:11:24.704 -07 000000467 INF: Autofocus start
17-03-18 02:11:24.704 -07 000000467 INF: MeasureProfile start
17-03-18 02:11:24.704 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:11:24.714 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:11:24.714 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:11:24.714 -07 000000467 INF: MeasureProfile done
17-03-18 02:11:24.714 -07 000000467 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 02:11:24.714 -07 000000467 INF: Autofocus finished
17-03-18 02:11:24.914 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:11:24.914 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:11:24.914 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.138863628252257. ----------
17-03-18 02:11:24.924 -07 000000610 INF: Cycle	96	Tile	5	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:11:24.924 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28811, sync = True, waitForSettling = True)
17-03-18 02:11:24.924 -07 000000610 INF: Z Motor: Moving to -0.131888 mm, started at -0.138864 mm, distance = 6.98 um
17-03-18 02:11:24.924 -07 000000610 INF: FPGA: Xmit ZDACW 28811\n [Z Motor]
17-03-18 02:11:24.924 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:11:24.934 -07 000000610 INF: FPGA: 'ZDACW 28811' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:11:24.934 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:11:24.934 -07 000000591 INF: FPGA: Recv ZDACR 28811
17-03-18 02:11:24.944 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:24.944 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:11:25.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:25.094 -07 000000512 INF: FPGA: Recv ZSGSRD 29817
17-03-18 02:11:25.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:11:25.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:25.104 -07 000000629 INF: FPGA: Recv ZSGSRD 29828
17-03-18 02:11:25.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:25.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:25.114 -07 000000430 INF: FPGA: Recv ZSGSRD 29825
17-03-18 02:11:25.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:25.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:25.124 -07 000000455 INF: FPGA: Recv ZSGSRD 29816
17-03-18 02:11:25.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:25.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:25.134 -07 000000502 INF: FPGA: Recv ZSGSRD 29822
17-03-18 02:11:25.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:25.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:25.144 -07 000000512 INF: FPGA: Recv ZSGSRD 29824
17-03-18 02:11:25.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:25.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:25.154 -07 000000629 INF: FPGA: Recv ZSGSRD 29820
17-03-18 02:11:25.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:25.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:25.164 -07 000000430 INF: FPGA: Recv ZSGSRD 29820
17-03-18 02:11:25.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:25.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:25.174 -07 000000626 INF: FPGA: Recv ZSGSRD 29818
17-03-18 02:11:25.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:25.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:25.184 -07 000000461 INF: FPGA: Recv ZSGSRD 29821
17-03-18 02:11:25.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:25.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:11:25.194 -07 000000512 INF: FPGA: Recv ZPIEZORD 25362
17-03-18 02:11:25.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:25.204 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.396 V. Piezo Error = -9.8 V.
17-03-18 02:11:25.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29821 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29820 (-131.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29816 (-131.1 uncal um), Max = 29828 (-131.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:11:25.204 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29821, posNoise = 7, negNoise = 5
17-03-18 02:11:25.204 -07 000000610 INF: Z Motor: After move to -0.131888, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:11:25.204 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:11:25.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:11:25.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:11:25.204 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:11:25.204 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:11:25.204 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:11:25.204 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:11:25.204 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:11:25.204 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:11:25.204 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:11:25.204 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:11:25.204 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:11:25.204 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:11:25.204 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:11:25.204 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:11:25.214 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:11:25.214 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:11:25.224 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-18 02:11:25.224 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:11:25.224 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:11:25.224 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:11:25.234 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28988 150\n [Camera]
17-03-18 02:11:25.424 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:11:25.544 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 3.999021,
17-03-18 02:11:25.824 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:11:25.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:11:25.824 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:11:25.824 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:11:25.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:11:25.824 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:11:25.824 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:11:25.824 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:11:25.834 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:11:25.834 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:11:26.014 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28988 778
17-03-18 02:11:26.164 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:11:26.214 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 02:11:26.214 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 02:11:26.214 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:26.214 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:11:26.214 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 02:11:26.214 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:11:26.214 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:26.214 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:11:26.214 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:11:26.224 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:11:26.354 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:11:26.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:11:26.354 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:11:26.354 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:11:26.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:11:26.354 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:11:26.484 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:11:26.484 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:11:26.484 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:11:26.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:11:26.484 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:11:26.484 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:11:26.544 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:11:26.544 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:11:26.544 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28988 150' command took 2 ms to send, 1307 ms to get response, and 1317 ms overall
17-03-18 02:11:26.544 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:11:26.544 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.131899782290589. ------
17-03-18 02:11:26.554 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:11:26.554 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13806 mm
17-03-18 02:11:26.554 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:11:26.554 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 02:11:26.554 -07 000000569 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 02:11:26.554 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:11:26.554 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 30160, sync = True, waitForSettling = False)
17-03-18 02:11:26.554 -07 000000629 INF: Z Motor: Moving to -0.138064 mm, started at -0.131900 mm, distance = -6.16 um
17-03-18 02:11:26.564 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:11:26.564 -07 000000629 INF: FPGA: Xmit ZDACW 30160\n [Z Motor]
17-03-18 02:11:26.564 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:11:26.574 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:26.574 -07 000000629 INF: FPGA: 'ZDACW 30160' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:11:26.574 -07 000000561 INF: FPGA: Recv YRDPOS 129483
17-03-18 02:11:26.584 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:11:26.584 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:11:26.584 -07 000000569 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:26.584 -07 000000569 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:11:26.584 -07 000000569 INF: Y Motor: Moving 1342 steps-17
17-03-18 02:11:26.594 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:11:26.594 -07 000000461 INF: FPGA: Recv ZDACR 30160
17-03-18 02:11:26.604 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:11:26.604 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:11:26.604 -07 000000629 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 02:11:26.784 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:11:26.784 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:11:26.864 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 02:11:26.864 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:11:26.864 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:26.864 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:11:26.874 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 02:11:26.874 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:11:26.874 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:26.874 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:11:26.874 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-18 02:11:26.874 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 517 ms.
17-03-18 02:11:26.974 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 02:11:26.974 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 02:11:27.024 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:27.024 -07 000000424 INF: FPGA: Recv YRDPOS 131188
17-03-18 02:11:27.034 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:11:27.034 -07 000000569 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:27.034 -07 000000569 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-18 02:11:27.034 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.123 mm/sec
17-03-18 02:11:27.984 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:27.984 -07 000000424 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:11:27.994 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:11:27.994 -07 000000569 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:28.014 -07 000000569 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:11:28.014 -07 000000569 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:11:28.014 -07 000000569 INF: Y Motor: Moved to 64.0571 after 1457 ms (table move)
17-03-18 02:11:28.014 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138064 mm (DAC = 30160)
17-03-18 02:11:28.014 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:28.024 -07 000000569 INF: FPGA: Recv ZSGSRD 30793
17-03-18 02:11:28.024 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:11:28.024 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:28.024 -07 000000444 INF: FPGA: Recv ZSGSRD 30782
17-03-18 02:11:28.034 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:11:28.034 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:28.034 -07 000000467 INF: FPGA: Recv ZSGSRD 30785
17-03-18 02:11:28.044 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:28.044 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:28.044 -07 000000590 INF: FPGA: Recv ZSGSRD 30782
17-03-18 02:11:28.054 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:28.054 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:28.054 -07 000000591 INF: FPGA: Recv ZSGSRD 30783
17-03-18 02:11:28.064 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:28.064 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:28.064 -07 000000626 INF: FPGA: Recv ZSGSRD 30787
17-03-18 02:11:28.074 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:28.074 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:28.074 -07 000000629 INF: FPGA: Recv ZSGSRD 30767
17-03-18 02:11:28.084 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:28.084 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:28.084 -07 000000576 INF: FPGA: Recv ZSGSRD 30783
17-03-18 02:11:28.094 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:28.094 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:28.094 -07 000000606 INF: FPGA: Recv ZSGSRD 30783
17-03-18 02:11:28.104 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:28.104 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:28.104 -07 000000626 INF: FPGA: Recv ZSGSRD 30781
17-03-18 02:11:28.114 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:28.114 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:11:28.114 -07 000000424 INF: FPGA: Recv ZPIEZORD 26590
17-03-18 02:11:28.124 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:28.124 -07 000000455 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.602 V. Piezo Error = -9.2 V.
17-03-18 02:11:28.124 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.1 um, Read 10 ADC samples: Avg = 30783 (-137.3 uncal um), Error = 0.8 uncal um, Median = 30783 (-137.3 uncal um), StdDev = 7 (0.0 uncal um), Range = 26 (0.2 uncal um), Min = 30767 (-137.2 uncal um), Max = 30793 (-137.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 16 (0.1 uncal um)
17-03-18 02:11:28.124 -07 000000455 INF: Z Motor: ADC noise = 16, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30783, posNoise = 10, negNoise = 16
17-03-18 02:11:28.124 -07 000000455 INF: Z Motor: After move to -0.138064, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:11:28.124 -07 000000455 INF: Z Motor: Settle wait time = 1459 ms, measure time = 104 ms (allowed 150 ms), total time = 1563 ms
17-03-18 02:11:28.124 -07 000000455 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 02:11:28.174 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 02:11:28.174 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:11:28.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:11:28.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:11:28.174 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:11:28.174 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:11:28.174 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:11:28.174 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:11:28.174 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:11:28.174 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:11:28.184 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:11:28.184 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:11:28.194 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:11:28.194 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:11:28.194 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:11:28.244 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:11:28.544 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:11:28.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:11:28.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:11:28.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:11:28.574 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:11:28.584 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 02:11:28.584 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:11:28.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:11:28.654 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:28.654 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:11:28.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 02:11:28.684 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:11:28.684 -07 000000561 INF: Autofocus start
17-03-18 02:11:28.684 -07 000000561 INF: MeasureProfile start
17-03-18 02:11:28.684 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:11:28.694 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:11:28.694 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:11:28.694 -07 000000561 INF: MeasureProfile done
17-03-18 02:11:28.694 -07 000000561 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:11:28.694 -07 000000561 INF: Autofocus finished
17-03-18 02:11:28.894 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:11:28.894 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:11:28.894 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138079874370963. ----------
17-03-18 02:11:28.894 -07 000000610 INF: Cycle	96	Tile	6	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:11:28.904 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28655, sync = True, waitForSettling = True)
17-03-18 02:11:28.904 -07 000000610 INF: Z Motor: Moving to -0.131174 mm, started at -0.138080 mm, distance = 6.91 um
17-03-18 02:11:28.904 -07 000000610 INF: FPGA: Xmit ZDACW 28655\n [Z Motor]
17-03-18 02:11:28.904 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:11:28.914 -07 000000610 INF: FPGA: 'ZDACW 28655' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:11:28.914 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:11:28.914 -07 000000461 INF: FPGA: Recv ZDACR 28655
17-03-18 02:11:28.924 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:28.924 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:11:29.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:29.074 -07 000000502 INF: FPGA: Recv ZSGSRD 29710
17-03-18 02:11:29.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:29.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:29.084 -07 000000569 INF: FPGA: Recv ZSGSRD 29706
17-03-18 02:11:29.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:29.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:29.094 -07 000000444 INF: FPGA: Recv ZSGSRD 29708
17-03-18 02:11:29.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:29.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:29.104 -07 000000467 INF: FPGA: Recv ZSGSRD 29708
17-03-18 02:11:29.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:29.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:29.114 -07 000000455 INF: FPGA: Recv ZSGSRD 29707
17-03-18 02:11:29.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:29.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:29.124 -07 000000502 INF: FPGA: Recv ZSGSRD 29709
17-03-18 02:11:29.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:29.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:29.134 -07 000000430 INF: FPGA: Recv ZSGSRD 29709
17-03-18 02:11:29.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:29.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:29.144 -07 000000629 INF: FPGA: Recv ZSGSRD 29712
17-03-18 02:11:29.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:29.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:29.154 -07 000000606 INF: FPGA: Recv ZSGSRD 29708
17-03-18 02:11:29.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:29.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:29.164 -07 000000461 INF: FPGA: Recv ZSGSRD 29707
17-03-18 02:11:29.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:29.174 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:11:29.174 -07 000000462 INF: FPGA: Recv ZPIEZORD 25233
17-03-18 02:11:29.184 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:29.184 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.372 V. Piezo Error = -9.8 V.
17-03-18 02:11:29.184 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29708 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29708 (-130.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29706 (-130.4 uncal um), Max = 29712 (-130.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 02:11:29.184 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29708, posNoise = 4, negNoise = 2
17-03-18 02:11:29.184 -07 000000610 INF: Z Motor: After move to -0.131174, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:11:29.184 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:11:29.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:11:29.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:11:29.184 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:11:29.184 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:11:29.184 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:11:29.184 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:11:29.184 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:11:29.184 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:11:29.184 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:11:29.184 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:11:29.184 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:11:29.184 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:11:29.194 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:11:29.194 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:11:29.194 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:11:29.194 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:11:29.204 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:11:29.204 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:11:29.204 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:11:29.204 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:11:29.204 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28832 150\n [Camera]
17-03-18 02:11:29.404 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:11:29.794 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:11:29.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:11:29.794 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:11:29.794 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:11:29.804 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:11:29.804 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:11:29.804 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:11:29.804 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:11:29.804 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:11:29.804 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 02:11:29.984 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28832 778
17-03-18 02:11:30.134 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:11:30.174 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:11:30.174 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:11:30.174 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:30.174 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 02:11:30.174 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 02:11:30.174 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:30.184 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:30.184 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:30.184 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:11:30.194 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:11:30.324 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:11:30.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:11:30.324 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:11:30.334 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:11:30.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:11:30.334 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:11:30.334 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:11:30.334 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:11:30.334 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:11:30.334 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:11:30.514 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:11:30.524 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:11:30.524 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28832 150' command took 2 ms to send, 1310 ms to get response, and 1317 ms overall
17-03-18 02:11:30.524 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:11:30.524 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.13117384631857. ------
17-03-18 02:11:30.524 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:11:30.524 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13767 mm
17-03-18 02:11:30.524 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:11:30.534 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:11:30.534 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 02:11:30.534 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:11:30.534 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 30075, sync = True, waitForSettling = False)
17-03-18 02:11:30.534 -07 000000461 INF: Z Motor: Moving to -0.137675 mm, started at -0.131174 mm, distance = -6.50 um
17-03-18 02:11:30.534 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:11:30.534 -07 000000502 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 02:11:30.544 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:30.544 -07 000000455 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:11:30.554 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:11:30.554 -07 000000461 INF: FPGA: Xmit ZDACW 30075\n [Z Motor]
17-03-18 02:11:30.554 -07 000000502 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:30.554 -07 000000502 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:11:30.554 -07 000000502 INF: Y Motor: Moving 1337 steps-12
17-03-18 02:11:30.554 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:11:30.564 -07 000000461 INF: FPGA: 'ZDACW 30075' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:11:30.564 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:11:30.564 -07 000000444 INF: FPGA: Recv ZDACR 30075
17-03-18 02:11:30.574 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:11:30.574 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:30.574 -07 000000461 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 02:11:30.734 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:11:30.734 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:11:30.734 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:11:30.734 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:30.734 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:11:30.734 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:11:30.734 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:30.734 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:11:30.734 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:30.734 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:30.734 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:11:30.744 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:11:30.904 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 4.008536,
17-03-18 02:11:30.944 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 02:11:30.954 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-18 02:11:30.994 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:30.994 -07 000000590 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:11:31.004 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:11:31.004 -07 000000502 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:31.004 -07 000000502 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:11:31.004 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.835 mm, average velocity = 2.089 mm/sec
17-03-18 02:11:31.464 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:11:31.464 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:11:31.954 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:31.954 -07 000000461 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:11:31.964 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:11:31.964 -07 000000502 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:31.984 -07 000000502 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:11:31.984 -07 000000502 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:11:31.984 -07 000000502 INF: Y Motor: Moved to 64.8789 after 1458 ms (table move)
17-03-18 02:11:31.994 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137675 mm (DAC = 30075)
17-03-18 02:11:31.994 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:31.994 -07 000000591 INF: FPGA: Recv ZSGSRD 30717
17-03-18 02:11:32.004 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:11:32.004 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:32.004 -07 000000461 INF: FPGA: Recv ZSGSRD 30718
17-03-18 02:11:32.014 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:32.014 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:32.014 -07 000000462 INF: FPGA: Recv ZSGSRD 30727
17-03-18 02:11:32.024 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:32.024 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:32.024 -07 000000561 INF: FPGA: Recv ZSGSRD 30726
17-03-18 02:11:32.034 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:32.034 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:32.034 -07 000000591 INF: FPGA: Recv ZSGSRD 30721
17-03-18 02:11:32.044 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:32.044 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:32.044 -07 000000579 INF: FPGA: Recv ZSGSRD 30720
17-03-18 02:11:32.054 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:32.054 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:32.054 -07 000000590 INF: FPGA: Recv ZSGSRD 30719
17-03-18 02:11:32.064 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:32.064 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:32.064 -07 000000569 INF: FPGA: Recv ZSGSRD 30718
17-03-18 02:11:32.074 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:32.074 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:32.074 -07 000000461 INF: FPGA: Recv ZSGSRD 30715
17-03-18 02:11:32.084 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:32.084 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:32.084 -07 000000606 INF: FPGA: Recv ZSGSRD 30721
17-03-18 02:11:32.094 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:32.094 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:11:32.094 -07 000000467 INF: FPGA: Recv ZPIEZORD 26567
17-03-18 02:11:32.104 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:32.104 -07 000000512 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.589 V. Piezo Error = -9.1 V.
17-03-18 02:11:32.104 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30720 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30720 (-136.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30715 (-136.8 uncal um), Max = 30727 (-136.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:11:32.104 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30720, posNoise = 7, negNoise = 5
17-03-18 02:11:32.104 -07 000000512 INF: Z Motor: After move to -0.137675, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:11:32.104 -07 000000512 INF: Z Motor: Settle wait time = 1460 ms, measure time = 109 ms (allowed 150 ms), total time = 1569 ms
17-03-18 02:11:32.104 -07 000000512 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:11:32.154 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 02:11:32.154 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:11:32.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:11:32.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:11:32.154 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:11:32.154 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:11:32.154 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:11:32.154 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:11:32.154 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:11:32.154 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:11:32.164 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:11:32.164 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:11:32.174 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:11:32.174 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:11:32.174 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:11:32.224 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:11:32.524 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:11:32.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:11:32.524 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:11:32.524 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1099155104, 0x0, 559484976) start.
17-03-18 02:11:32.564 -07 000000576 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:11:32.564 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 02:11:32.564 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 02:11:32.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1099155104, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:11:32.634 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:32.644 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:11:32.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:11:32.664 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:11:32.664 -07 000000462 INF: Autofocus start
17-03-18 02:11:32.664 -07 000000462 INF: MeasureProfile start
17-03-18 02:11:32.664 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:11:32.674 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:11:32.674 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:11:32.674 -07 000000462 INF: MeasureProfile done
17-03-18 02:11:32.674 -07 000000462 INF: X=24  Z correction [um]=0.09150101
17-03-18 02:11:32.674 -07 000000462 INF: Autofocus finished
17-03-18 02:11:32.874 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:11:32.874 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:11:32.874 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.137675149006032. ----------
17-03-18 02:11:32.884 -07 000000610 INF: Cycle	96	Tile	7	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:11:32.884 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28607, sync = True, waitForSettling = True)
17-03-18 02:11:32.884 -07 000000610 INF: Z Motor: Moving to -0.130954 mm, started at -0.137675 mm, distance = 6.72 um
17-03-18 02:11:32.884 -07 000000610 INF: FPGA: Xmit ZDACW 28607\n [Z Motor]
17-03-18 02:11:32.884 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:11:32.894 -07 000000610 INF: FPGA: 'ZDACW 28607' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:11:32.894 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:11:32.894 -07 000000512 INF: FPGA: Recv ZDACR 28607
17-03-18 02:11:32.904 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:32.904 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:11:33.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:33.054 -07 000000424 INF: FPGA: Recv ZSGSRD 29669
17-03-18 02:11:33.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:11:33.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:33.064 -07 000000502 INF: FPGA: Recv ZSGSRD 29678
17-03-18 02:11:33.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:33.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:33.074 -07 000000462 INF: FPGA: Recv ZSGSRD 29671
17-03-18 02:11:33.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:33.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:33.084 -07 000000591 INF: FPGA: Recv ZSGSRD 29676
17-03-18 02:11:33.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:33.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:33.094 -07 000000455 INF: FPGA: Recv ZSGSRD 29675
17-03-18 02:11:33.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:33.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:33.104 -07 000000424 INF: FPGA: Recv ZSGSRD 29677
17-03-18 02:11:33.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:33.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:33.114 -07 000000512 INF: FPGA: Recv ZSGSRD 29675
17-03-18 02:11:33.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:33.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:33.124 -07 000000591 INF: FPGA: Recv ZSGSRD 29672
17-03-18 02:11:33.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:33.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:33.134 -07 000000455 INF: FPGA: Recv ZSGSRD 29677
17-03-18 02:11:33.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:33.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:33.144 -07 000000430 INF: FPGA: Recv ZSGSRD 29678
17-03-18 02:11:33.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:33.154 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:11:33.154 -07 000000424 INF: FPGA: Recv ZPIEZORD 25203
17-03-18 02:11:33.164 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:33.164 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.365 V. Piezo Error = -9.8 V.
17-03-18 02:11:33.164 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29675 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29676 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29669 (-130.1 uncal um), Max = 29678 (-130.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:11:33.164 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29675, posNoise = 3, negNoise = 6
17-03-18 02:11:33.164 -07 000000610 INF: Z Motor: After move to -0.130954, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:11:33.164 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:11:33.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:11:33.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:11:33.164 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:11:33.164 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:11:33.164 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:11:33.164 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:11:33.164 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:11:33.164 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:11:33.164 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:11:33.164 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:11:33.164 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:11:33.164 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:11:33.164 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:11:33.164 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:11:33.174 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:11:33.174 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:11:33.174 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:11:33.174 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:11:33.174 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:11:33.174 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:11:33.184 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28784 150\n [Camera]
17-03-18 02:11:33.384 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:11:33.774 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:11:33.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:11:33.774 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:11:33.774 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:11:33.774 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:11:33.784 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:11:33.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:11:33.784 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:11:33.784 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:11:33.784 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:11:33.964 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28784 778
17-03-18 02:11:34.114 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:11:34.164 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 02:11:34.164 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:11:34.164 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:34.164 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 02:11:34.164 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:11:34.164 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:34.164 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:34.164 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:34.164 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:11:34.174 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:11:34.304 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:11:34.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:11:34.304 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:11:34.424 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:11:34.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:11:34.434 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:11:34.434 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:11:34.434 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 02:11:34.434 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:11:34.434 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:11:34.494 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:11:34.504 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:11:34.504 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28784 150' command took 2 ms to send, 1310 ms to get response, and 1317 ms overall
17-03-18 02:11:34.504 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:11:34.504 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.130961847317891. ------
17-03-18 02:11:34.504 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:11:34.504 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13761 mm
17-03-18 02:11:34.504 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:11:34.504 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 02:11:34.504 -07 000000626 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 02:11:34.504 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 30061, sync = True, waitForSettling = False)
17-03-18 02:11:34.504 -07 000000430 INF: Z Motor: Moving to -0.137610 mm, started at -0.130962 mm, distance = -6.65 um
17-03-18 02:11:34.504 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:11:34.514 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:11:34.514 -07 000000430 INF: FPGA: Xmit ZDACW 30061\n [Z Motor]
17-03-18 02:11:34.514 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:11:34.524 -07 000000430 INF: FPGA: 'ZDACW 30061' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:11:34.524 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:34.524 -07 000000467 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:11:34.534 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:11:34.534 -07 000000626 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:34.534 -07 000000626 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:11:34.534 -07 000000626 INF: Y Motor: Moving 1350 steps-28
17-03-18 02:11:34.534 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:11:34.544 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:11:34.544 -07 000000579 INF: FPGA: Recv ZDACR 30061
17-03-18 02:11:34.554 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:11:34.554 -07 000000430 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 02:11:34.554 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:11:34.734 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:11:34.734 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 225 ms overall
17-03-18 02:11:34.814 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 02:11:34.814 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 02:11:34.814 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:34.814 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 02:11:34.814 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:11:34.814 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:34.824 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:34.824 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:11:34.824 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-18 02:11:34.824 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:11:34.924 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 02:11:34.924 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 02:11:34.974 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:34.974 -07 000000606 INF: FPGA: Recv YRDPOS 134582
17-03-18 02:11:34.984 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:11:34.984 -07 000000626 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:34.984 -07 000000626 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 02:11:34.984 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-18 02:11:35.934 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:35.934 -07 000000569 INF: FPGA: Recv YRDPOS 134583
17-03-18 02:11:35.944 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:11:35.944 -07 000000626 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:35.974 -07 000000626 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:11:35.974 -07 000000626 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:11:35.974 -07 000000626 INF: Y Motor: Moved to 65.7144 after 1463 ms (table move)
17-03-18 02:11:35.974 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137610 mm (DAC = 30061)
17-03-18 02:11:35.974 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:35.974 -07 000000590 INF: FPGA: Recv ZSGSRD 30709
17-03-18 02:11:35.984 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:11:35.984 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:35.984 -07 000000569 INF: FPGA: Recv ZSGSRD 30716
17-03-18 02:11:35.994 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:35.994 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:35.994 -07 000000606 INF: FPGA: Recv ZSGSRD 30713
17-03-18 02:11:36.004 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:36.004 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:36.004 -07 000000626 INF: FPGA: Recv ZSGSRD 30711
17-03-18 02:11:36.014 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:36.014 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:36.014 -07 000000424 INF: FPGA: Recv ZSGSRD 30715
17-03-18 02:11:36.024 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:36.024 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:36.024 -07 000000424 INF: FPGA: Recv ZSGSRD 30710
17-03-18 02:11:36.034 -07 000000591 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:36.034 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:36.034 -07 000000512 INF: FPGA: Recv ZSGSRD 30709
17-03-18 02:11:36.044 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:36.044 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:36.044 -07 000000576 INF: FPGA: Recv ZSGSRD 30707
17-03-18 02:11:36.054 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:36.054 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:36.054 -07 000000462 INF: FPGA: Recv ZSGSRD 30714
17-03-18 02:11:36.064 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:36.064 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:36.064 -07 000000502 INF: FPGA: Recv ZSGSRD 30713
17-03-18 02:11:36.074 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:36.074 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:11:36.074 -07 000000569 INF: FPGA: Recv ZPIEZORD 26589
17-03-18 02:11:36.084 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:36.084 -07 000000591 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.587 V. Piezo Error = -9.1 V.
17-03-18 02:11:36.084 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30712 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30712 (-136.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30707 (-136.8 uncal um), Max = 30716 (-136.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:11:36.084 -07 000000591 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30712, posNoise = 4, negNoise = 5
17-03-18 02:11:36.084 -07 000000591 INF: Z Motor: After move to -0.137610, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:11:36.084 -07 000000591 INF: Z Motor: Settle wait time = 1466 ms, measure time = 106 ms (allowed 150 ms), total time = 1572 ms
17-03-18 02:11:36.084 -07 000000591 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:11:36.134 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 02:11:36.134 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:11:36.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:11:36.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:11:36.134 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:11:36.134 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:11:36.134 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:11:36.134 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:11:36.134 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:11:36.134 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:11:36.144 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:11:36.144 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:11:36.154 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:11:36.154 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 02:11:36.154 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:11:36.204 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:11:36.264 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 3.994908,
17-03-18 02:11:36.464 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:11:36.464 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:11:36.504 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:11:36.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:11:36.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:11:36.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:11:36.544 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:11:36.544 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 02:11:36.544 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 02:11:36.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:11:36.614 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:36.624 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:11:36.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:11:36.644 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:11:36.644 -07 000000455 INF: Autofocus start
17-03-18 02:11:36.644 -07 000000455 INF: MeasureProfile start
17-03-18 02:11:36.644 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:11:36.654 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:11:36.654 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:11:36.654 -07 000000455 INF: MeasureProfile done
17-03-18 02:11:36.654 -07 000000455 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:11:36.654 -07 000000455 INF: Autofocus finished
17-03-18 02:11:36.854 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:11:36.854 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:11:36.854 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.137623755308898. ----------
17-03-18 02:11:36.864 -07 000000610 INF: Cycle	96	Tile	8	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:11:36.864 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28556, sync = True, waitForSettling = True)
17-03-18 02:11:36.864 -07 000000610 INF: Z Motor: Moving to -0.130721 mm, started at -0.137624 mm, distance = 6.90 um
17-03-18 02:11:36.864 -07 000000610 INF: FPGA: Xmit ZDACW 28556\n [Z Motor]
17-03-18 02:11:36.864 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:11:36.874 -07 000000610 INF: FPGA: 'ZDACW 28556' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:11:36.874 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:11:36.874 -07 000000561 INF: FPGA: Recv ZDACR 28556
17-03-18 02:11:36.884 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:36.884 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:11:37.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:37.034 -07 000000579 INF: FPGA: Recv ZSGSRD 29643
17-03-18 02:11:37.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:11:37.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:37.044 -07 000000461 INF: FPGA: Recv ZSGSRD 29631
17-03-18 02:11:37.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:37.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:37.054 -07 000000424 INF: FPGA: Recv ZSGSRD 29629
17-03-18 02:11:37.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:37.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:37.064 -07 000000629 INF: FPGA: Recv ZSGSRD 29640
17-03-18 02:11:37.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:37.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:37.074 -07 000000512 INF: FPGA: Recv ZSGSRD 29639
17-03-18 02:11:37.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:37.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:37.084 -07 000000576 INF: FPGA: Recv ZSGSRD 29639
17-03-18 02:11:37.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:37.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:37.094 -07 000000461 INF: FPGA: Recv ZSGSRD 29632
17-03-18 02:11:37.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:37.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:37.104 -07 000000424 INF: FPGA: Recv ZSGSRD 29641
17-03-18 02:11:37.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:37.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:37.114 -07 000000629 INF: FPGA: Recv ZSGSRD 29637
17-03-18 02:11:37.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:37.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:37.124 -07 000000512 INF: FPGA: Recv ZSGSRD 29638
17-03-18 02:11:37.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:37.134 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:11:37.134 -07 000000502 INF: FPGA: Recv ZPIEZORD 25179
17-03-18 02:11:37.144 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:37.144 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.357 V. Piezo Error = -9.8 V.
17-03-18 02:11:37.144 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29637 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29638 (-129.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29629 (-129.9 uncal um), Max = 29643 (-130.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:11:37.144 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29637, posNoise = 6, negNoise = 8
17-03-18 02:11:37.144 -07 000000610 INF: Z Motor: After move to -0.130721, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:11:37.144 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:11:37.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:11:37.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:11:37.144 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:11:37.144 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:11:37.144 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:11:37.144 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:11:37.144 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:11:37.144 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:11:37.144 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:11:37.144 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:11:37.144 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:11:37.144 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:11:37.154 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:11:37.154 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:11:37.154 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:11:37.154 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:11:37.164 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:11:37.164 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:11:37.164 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:11:37.164 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:11:37.164 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28733 150\n [Camera]
17-03-18 02:11:37.364 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:11:37.754 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:11:37.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:11:37.754 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:11:37.764 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:11:37.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:11:37.764 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:11:37.764 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:11:37.764 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:11:37.764 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:11:37.764 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:11:37.954 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28733 778
17-03-18 02:11:38.094 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:11:38.134 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 02:11:38.134 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 02:11:38.134 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:38.134 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 02:11:38.134 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 02:11:38.134 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:38.144 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:11:38.144 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:11:38.144 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:11:38.264 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 503 ms.
17-03-18 02:11:38.284 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:11:38.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:11:38.294 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:11:38.294 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:11:38.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:11:38.294 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:11:38.294 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:11:38.294 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:11:38.294 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:11:38.294 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:11:38.484 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:11:38.484 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:11:38.484 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28733 150' command took 2 ms to send, 1311 ms to get response, and 1317 ms overall
17-03-18 02:11:38.484 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:11:38.484 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.130717727256504. ------
17-03-18 02:11:38.484 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:11:38.484 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13716 mm
17-03-18 02:11:38.484 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:11:38.494 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:11:38.494 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:11:38.494 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:11:38.494 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 29962, sync = True, waitForSettling = False)
17-03-18 02:11:38.494 -07 000000461 INF: Z Motor: Moving to -0.137157 mm, started at -0.130718 mm, distance = -6.44 um
17-03-18 02:11:38.494 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 02:11:38.494 -07 000000569 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-18 02:11:38.504 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:38.504 -07 000000462 INF: FPGA: Recv YRDPOS 134583
17-03-18 02:11:38.514 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:11:38.514 -07 000000569 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:38.514 -07 000000569 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:11:38.514 -07 000000569 INF: Y Motor: Moving 1341 steps-18
17-03-18 02:11:38.514 -07 000000461 INF: FPGA: Xmit ZDACW 29962\n [Z Motor]
17-03-18 02:11:38.514 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:11:38.524 -07 000000461 INF: FPGA: 'ZDACW 29962' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:11:38.524 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:11:38.524 -07 000000629 INF: FPGA: Recv ZDACR 29962
17-03-18 02:11:38.534 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:38.534 -07 000000461 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 02:11:38.534 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:11:38.684 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 02:11:38.694 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:11:38.694 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:38.694 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 02:11:38.694 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:11:38.694 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:38.694 -07 000000430 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:11:38.694 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 02:11:38.694 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:38.694 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:11:38.694 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:38.704 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 02:11:38.904 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 02:11:38.904 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:11:38.954 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:38.954 -07 000000629 INF: FPGA: Recv YRDPOS 136271
17-03-18 02:11:38.964 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:11:38.964 -07 000000569 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:38.964 -07 000000569 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:11:38.964 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.106 mm/sec
17-03-18 02:11:39.914 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:39.914 -07 000000467 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:11:39.924 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:11:39.924 -07 000000569 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:39.944 -07 000000569 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:11:39.944 -07 000000569 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:11:39.944 -07 000000569 INF: Y Motor: Moved to 66.5391 after 1454 ms (table move)
17-03-18 02:11:39.954 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137157 mm (DAC = 29962)
17-03-18 02:11:39.954 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:39.954 -07 000000591 INF: FPGA: Recv ZSGSRD 30635
17-03-18 02:11:39.964 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:11:39.964 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:39.964 -07 000000502 INF: FPGA: Recv ZSGSRD 30638
17-03-18 02:11:39.974 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:39.974 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:39.974 -07 000000444 INF: FPGA: Recv ZSGSRD 30640
17-03-18 02:11:39.984 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:39.984 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:39.984 -07 000000606 INF: FPGA: Recv ZSGSRD 30649
17-03-18 02:11:39.994 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:39.994 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:39.994 -07 000000576 INF: FPGA: Recv ZSGSRD 30638
17-03-18 02:11:40.004 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:40.004 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:40.004 -07 000000430 INF: FPGA: Recv ZSGSRD 30638
17-03-18 02:11:40.014 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:40.014 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:40.014 -07 000000444 INF: FPGA: Recv ZSGSRD 30639
17-03-18 02:11:40.024 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:40.024 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:40.024 -07 000000569 INF: FPGA: Recv ZSGSRD 30645
17-03-18 02:11:40.034 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:40.034 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:40.034 -07 000000576 INF: FPGA: Recv ZSGSRD 30644
17-03-18 02:11:40.044 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:40.044 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:40.044 -07 000000461 INF: FPGA: Recv ZSGSRD 30648
17-03-18 02:11:40.054 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:40.054 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:11:40.054 -07 000000455 INF: FPGA: Recv ZPIEZORD 26479
17-03-18 02:11:40.064 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:40.064 -07 000000579 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.572 V. Piezo Error = -9.2 V.
17-03-18 02:11:40.064 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30641 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30640 (-136.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30635 (-136.3 uncal um), Max = 30649 (-136.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:11:40.064 -07 000000579 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30641, posNoise = 8, negNoise = 6
17-03-18 02:11:40.064 -07 000000579 INF: Z Motor: After move to -0.137157, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:11:40.064 -07 000000579 INF: Z Motor: Settle wait time = 1457 ms, measure time = 109 ms (allowed 150 ms), total time = 1566 ms
17-03-18 02:11:40.064 -07 000000579 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:11:40.114 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 02:11:40.114 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:11:40.114 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:11:40.114 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:11:40.114 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:11:40.114 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:11:40.114 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:11:40.114 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:11:40.114 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:11:40.114 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:11:40.124 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:11:40.124 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:11:40.134 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:11:40.134 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 02:11:40.134 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:11:40.184 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:11:40.484 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:11:40.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:11:40.484 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:11:40.484 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:11:40.524 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:11:40.524 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 02:11:40.524 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 02:11:40.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:11:40.604 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:40.604 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:11:40.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:11:40.624 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:11:40.624 -07 000000467 INF: Autofocus start
17-03-18 02:11:40.624 -07 000000467 INF: MeasureProfile start
17-03-18 02:11:40.634 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:11:40.634 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:11:40.634 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:11:40.644 -07 000000467 INF: MeasureProfile done
17-03-18 02:11:40.644 -07 000000467 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:11:40.644 -07 000000467 INF: Autofocus finished
17-03-18 02:11:40.834 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:11:40.834 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:11:40.834 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.137167636246832. ----------
17-03-18 02:11:40.834 -07 000000610 INF: Cycle	96	Tile	9	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:11:40.844 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28469, sync = True, waitForSettling = True)
17-03-18 02:11:40.844 -07 000000610 INF: Z Motor: Moving to -0.130323 mm, started at -0.137168 mm, distance = 6.84 um
17-03-18 02:11:40.844 -07 000000610 INF: FPGA: Xmit ZDACW 28469\n [Z Motor]
17-03-18 02:11:40.844 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:11:40.854 -07 000000610 INF: FPGA: 'ZDACW 28469' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:11:40.854 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:11:40.854 -07 000000576 INF: FPGA: Recv ZDACR 28469
17-03-18 02:11:40.864 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:40.864 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:11:41.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:41.014 -07 000000561 INF: FPGA: Recv ZSGSRD 29572
17-03-18 02:11:41.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:11:41.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:41.024 -07 000000430 INF: FPGA: Recv ZSGSRD 29582
17-03-18 02:11:41.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:41.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:41.034 -07 000000424 INF: FPGA: Recv ZSGSRD 29576
17-03-18 02:11:41.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:41.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:41.044 -07 000000462 INF: FPGA: Recv ZSGSRD 29574
17-03-18 02:11:41.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:41.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:41.064 -07 000000462 INF: FPGA: Recv ZSGSRD 29582
17-03-18 02:11:41.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:11:41.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:41.074 -07 000000424 INF: FPGA: Recv ZSGSRD 29574
17-03-18 02:11:41.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:41.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:41.104 -07 000000512 INF: FPGA: Recv ZSGSRD 29577
17-03-18 02:11:41.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:11:41.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:41.124 -07 000000444 INF: FPGA: Recv ZSGSRD 29574
17-03-18 02:11:41.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:11:41.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:41.144 -07 000000590 INF: FPGA: Recv ZSGSRD 29578
17-03-18 02:11:41.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:11:41.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:41.154 -07 000000561 INF: FPGA: Recv ZSGSRD 29579
17-03-18 02:11:41.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:41.164 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:11:41.164 -07 000000626 INF: FPGA: Recv ZPIEZORD 25089
17-03-18 02:11:41.174 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:41.174 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.344 V. Piezo Error = -9.8 V.
17-03-18 02:11:41.174 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29577 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29576 (-129.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29572 (-129.5 uncal um), Max = 29582 (-129.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:11:41.174 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29577, posNoise = 5, negNoise = 5
17-03-18 02:11:41.174 -07 000000610 INF: Z Motor: After move to -0.130323, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:11:41.174 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms)
17-03-18 02:11:41.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:11:41.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:11:41.174 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:11:41.174 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:11:41.174 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:11:41.174 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:11:41.174 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:11:41.174 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:11:41.174 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:11:41.174 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:11:41.174 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:11:41.174 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:11:41.174 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:11:41.174 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:11:41.174 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:11:41.174 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:11:41.184 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:11:41.184 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 02:11:41.184 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:11:41.184 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:11:41.194 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28646 150\n [Camera]
17-03-18 02:11:41.384 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:11:41.464 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:11:41.464 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:11:41.624 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 4.009895,
17-03-18 02:11:41.784 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:11:41.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:11:41.784 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:11:41.784 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:11:41.784 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-18 02:11:41.784 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:11:41.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:11:41.784 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:11:41.784 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:11:41.784 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:11:41.974 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28646 779
17-03-18 02:11:42.124 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:11:42.164 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 02:11:42.164 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 02:11:42.164 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:42.164 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 02:11:42.164 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 02:11:42.164 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:42.164 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:42.164 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:11:42.164 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:42.174 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:11:42.314 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:11:42.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:11:42.424 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:11:42.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:11:42.424 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:11:42.434 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:11:42.434 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:11:42.434 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:11:42.434 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:11:42.434 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:11:42.504 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:11:42.504 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:11:42.504 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28646 150' command took 2 ms to send, 1307 ms to get response, and 1317 ms overall
17-03-18 02:11:42.504 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:11:42.504 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.130332274527999. ------
17-03-18 02:11:42.514 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:11:42.514 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13711 mm
17-03-18 02:11:42.514 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:11:42.514 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 02:11:42.514 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 29952, sync = True, waitForSettling = False)
17-03-18 02:11:42.514 -07 000000444 INF: Z Motor: Moving to -0.137111 mm, started at -0.130332 mm, distance = -6.78 um
17-03-18 02:11:42.514 -07 000000606 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 02:11:42.514 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:11:42.524 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:11:42.524 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:11:42.534 -07 000000444 INF: FPGA: Xmit ZDACW 29952\n [Z Motor]
17-03-18 02:11:42.534 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:11:42.544 -07 000000444 INF: FPGA: 'ZDACW 29952' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:11:42.544 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:42.544 -07 000000629 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:11:42.554 -07 000000606 INF: FPGA: 'YRDPOS' command took 3 ms to send, 0 ms to get response, and 33 ms overall
17-03-18 02:11:42.554 -07 000000606 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:42.554 -07 000000606 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:11:42.554 -07 000000606 INF: Y Motor: Moving 1350 steps-29
17-03-18 02:11:42.554 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:11:42.554 -07 000000561 INF: FPGA: Recv ZDACR 29952
17-03-18 02:11:42.564 -07 000000444 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:11:42.564 -07 000000444 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 02:11:42.564 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:11:42.724 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:11:42.724 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:11:42.834 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 02:11:42.834 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:11:42.834 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:42.834 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 02:11:42.834 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:11:42.834 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:42.844 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:42.844 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:42.844 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 02:11:42.844 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 02:11:42.934 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 02:11:42.934 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:11:42.984 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:42.984 -07 000000424 INF: FPGA: Recv YRDPOS 137977
17-03-18 02:11:42.994 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:11:42.994 -07 000000606 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:42.994 -07 000000606 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 02:11:42.994 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.174 mm/sec
17-03-18 02:11:43.943 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:43.943 -07 000000591 INF: FPGA: Recv YRDPOS 137978
17-03-18 02:11:43.953 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:43.953 -07 000000606 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:43.973 -07 000000606 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:11:43.973 -07 000000606 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:11:43.973 -07 000000606 INF: Y Motor: Moved to 67.3721 after 1461 ms (table move)
17-03-18 02:11:43.983 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137111 mm (DAC = 29952)
17-03-18 02:11:43.983 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:43.983 -07 000000629 INF: FPGA: Recv ZSGSRD 30634
17-03-18 02:11:43.993 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:43.993 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:43.993 -07 000000591 INF: FPGA: Recv ZSGSRD 30633
17-03-18 02:11:44.003 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:44.003 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:44.003 -07 000000579 INF: FPGA: Recv ZSGSRD 30633
17-03-18 02:11:44.013 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:44.013 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:44.013 -07 000000424 INF: FPGA: Recv ZSGSRD 30636
17-03-18 02:11:44.023 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:44.023 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:44.023 -07 000000461 INF: FPGA: Recv ZSGSRD 30639
17-03-18 02:11:44.033 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:44.033 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:44.033 -07 000000462 INF: FPGA: Recv ZSGSRD 30631
17-03-18 02:11:44.043 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:44.043 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:44.043 -07 000000561 INF: FPGA: Recv ZSGSRD 30634
17-03-18 02:11:44.053 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:44.053 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:44.053 -07 000000467 INF: FPGA: Recv ZSGSRD 30630
17-03-18 02:11:44.063 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:44.063 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:44.063 -07 000000606 INF: FPGA: Recv ZSGSRD 30633
17-03-18 02:11:44.073 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:44.073 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:44.073 -07 000000502 INF: FPGA: Recv ZSGSRD 30628
17-03-18 02:11:44.083 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:44.083 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:11:44.083 -07 000000576 INF: FPGA: Recv ZPIEZORD 26508
17-03-18 02:11:44.093 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:44.093 -07 000000569 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.570 V. Piezo Error = -9.1 V.
17-03-18 02:11:44.093 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30633 (-136.3 uncal um), Error = 0.8 uncal um, Median = 30633 (-136.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30628 (-136.3 uncal um), Max = 30639 (-136.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:11:44.093 -07 000000569 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30633, posNoise = 6, negNoise = 5
17-03-18 02:11:44.093 -07 000000569 INF: Z Motor: After move to -0.137111, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:11:44.093 -07 000000569 INF: Z Motor: Settle wait time = 1464 ms, measure time = 110 ms (allowed 150 ms), total time = 1574 ms
17-03-18 02:11:44.093 -07 000000569 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:11:44.133 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 02:11:44.133 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:11:44.133 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:11:44.133 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:11:44.133 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:11:44.133 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:11:44.133 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:11:44.133 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:11:44.143 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:11:44.143 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:11:44.143 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 5 ms.
17-03-18 02:11:44.143 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:11:44.153 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:11:44.153 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 20 ms.
17-03-18 02:11:44.163 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:11:44.203 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:11:44.503 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:11:44.503 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:11:44.503 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:11:44.503 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:11:44.543 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:11:44.543 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 02:11:44.543 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:11:44.633 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 122 ms.
17-03-18 02:11:44.633 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:44.633 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:11:44.633 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 02:11:44.643 -07 000000430 INF: Autofocus start
17-03-18 02:11:44.643 -07 000000430 INF: MeasureProfile start
17-03-18 02:11:44.643 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:11:44.643 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:11:44.653 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:11:44.653 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:11:44.653 -07 000000430 INF: MeasureProfile done
17-03-18 02:11:44.653 -07 000000430 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:11:44.653 -07 000000430 INF: Autofocus finished
17-03-18 02:11:44.853 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:11:44.853 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:11:44.853 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137116242549698. ----------
17-03-18 02:11:44.853 -07 000000610 INF: Cycle	96	Tile	10	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:11:44.863 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28476, sync = True, waitForSettling = True)
17-03-18 02:11:44.863 -07 000000610 INF: Z Motor: Moving to -0.130355 mm, started at -0.137116 mm, distance = 6.76 um
17-03-18 02:11:44.863 -07 000000610 INF: FPGA: Xmit ZDACW 28476\n [Z Motor]
17-03-18 02:11:44.863 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:11:44.873 -07 000000610 INF: FPGA: 'ZDACW 28476' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:11:44.873 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:11:44.873 -07 000000629 INF: FPGA: Recv ZDACR 28476
17-03-18 02:11:44.883 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:44.883 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:11:45.033 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:45.033 -07 000000626 INF: FPGA: Recv ZSGSRD 29584
17-03-18 02:11:45.043 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:45.043 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:45.043 -07 000000576 INF: FPGA: Recv ZSGSRD 29581
17-03-18 02:11:45.053 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:45.053 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:45.053 -07 000000502 INF: FPGA: Recv ZSGSRD 29581
17-03-18 02:11:45.063 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:45.063 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:45.063 -07 000000569 INF: FPGA: Recv ZSGSRD 29578
17-03-18 02:11:45.073 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:45.073 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:45.073 -07 000000579 INF: FPGA: Recv ZSGSRD 29581
17-03-18 02:11:45.083 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:45.083 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:45.083 -07 000000512 INF: FPGA: Recv ZSGSRD 29583
17-03-18 02:11:45.093 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:45.093 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:45.093 -07 000000606 INF: FPGA: Recv ZSGSRD 29586
17-03-18 02:11:45.103 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:45.103 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:45.103 -07 000000462 INF: FPGA: Recv ZSGSRD 29583
17-03-18 02:11:45.113 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:45.113 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:45.113 -07 000000424 INF: FPGA: Recv ZSGSRD 29578
17-03-18 02:11:45.123 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:45.123 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:45.123 -07 000000576 INF: FPGA: Recv ZSGSRD 29581
17-03-18 02:11:45.133 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:45.133 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:11:45.133 -07 000000561 INF: FPGA: Recv ZPIEZORD 25128
17-03-18 02:11:45.143 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:45.143 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.345 V. Piezo Error = -9.8 V.
17-03-18 02:11:45.143 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29582 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29581 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29578 (-129.6 uncal um), Max = 29586 (-129.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:11:45.143 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29582, posNoise = 4, negNoise = 4
17-03-18 02:11:45.143 -07 000000610 INF: Z Motor: After move to -0.130355, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:11:45.143 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:11:45.143 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:11:45.143 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:11:45.143 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:11:45.143 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:11:45.143 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:11:45.143 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:11:45.143 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:11:45.143 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:11:45.143 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:11:45.143 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:11:45.143 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:11:45.143 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:11:45.153 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:11:45.153 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:11:45.153 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:11:45.153 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:11:45.163 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:11:45.163 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:11:45.163 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:11:45.163 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:11:45.163 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28653 150\n [Camera]
17-03-18 02:11:45.363 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:11:45.753 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:11:45.753 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:11:45.753 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:11:45.753 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:11:45.753 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-18 02:11:45.763 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:11:45.763 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:11:45.763 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:11:45.763 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:11:45.763 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:11:45.953 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28653 778
17-03-18 02:11:46.093 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:11:46.133 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 02:11:46.133 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 02:11:46.133 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:46.143 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 02:11:46.143 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 02:11:46.143 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:46.143 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:46.143 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:11:46.143 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:46.153 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:11:46.283 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:11:46.283 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:11:46.293 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:11:46.403 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:11:46.403 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:11:46.403 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:11:46.413 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:11:46.413 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:11:46.413 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:11:46.413 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:11:46.463 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:11:46.463 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:11:46.483 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:11:46.483 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:11:46.483 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28653 150' command took 4 ms to send, 1313 ms to get response, and 1319 ms overall
17-03-18 02:11:46.483 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:11:46.483 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.130364395588708. ------
17-03-18 02:11:46.493 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13669 mm
17-03-18 02:11:46.493 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:11:46.493 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 02:11:46.493 -07 000000467 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 02:11:46.493 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29859, sync = True, waitForSettling = False)
17-03-18 02:11:46.493 -07 000000502 INF: Z Motor: Moving to -0.136686 mm, started at -0.130364 mm, distance = -6.32 um
17-03-18 02:11:46.503 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:46.503 -07 000000569 INF: FPGA: Recv YRDPOS 137978
17-03-18 02:11:46.513 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:11:46.513 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:11:46.513 -07 000000467 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:46.513 -07 000000467 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:11:46.513 -07 000000467 INF: Y Motor: Moving 1345 steps-23
17-03-18 02:11:46.513 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:11:46.523 -07 000000502 INF: FPGA: Xmit ZDACW 29859\n [Z Motor]
17-03-18 02:11:46.523 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 02:11:46.523 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:11:46.533 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:11:46.533 -07 000000502 INF: FPGA: 'ZDACW 29859' command took 0 ms to send, 0 ms to get response, and 35 ms overall
17-03-18 02:11:46.543 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:11:46.553 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:11:46.553 -07 000000569 INF: FPGA: Recv ZDACR 29859
17-03-18 02:11:46.563 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:11:46.563 -07 000000502 INF: Z Motor: MoveAbsStepped took 66 ms (did NOT wait for settling yet))
17-03-18 02:11:46.743 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:11:46.743 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:11:46.793 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 02:11:46.793 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 02:11:46.793 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:46.793 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:11:46.793 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:11:46.793 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:46.793 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:11:46.793 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:11:46.793 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 509 ms.
17-03-18 02:11:46.803 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:11:46.903 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 02:11:46.903 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 02:11:46.953 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:46.953 -07 000000579 INF: FPGA: Recv YRDPOS 139685
17-03-18 02:11:46.963 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:11:46.963 -07 000000467 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:46.963 -07 000000467 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 02:11:46.963 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.841 mm, average velocity = 2.128 mm/sec
17-03-18 02:11:46.983 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 4.007176,
17-03-18 02:11:47.913 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:47.913 -07 000000561 INF: FPGA: Recv YRDPOS 139685
17-03-18 02:11:47.923 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:47.923 -07 000000467 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:47.943 -07 000000467 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:11:47.943 -07 000000467 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:11:47.943 -07 000000467 INF: Y Motor: Moved to 68.2056 after 1452 ms (table move)
17-03-18 02:11:47.943 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136686 mm (DAC = 29859)
17-03-18 02:11:47.943 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:47.953 -07 000000502 INF: FPGA: Recv ZSGSRD 30567
17-03-18 02:11:47.953 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 02:11:47.953 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:47.953 -07 000000579 INF: FPGA: Recv ZSGSRD 30566
17-03-18 02:11:47.963 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:11:47.963 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:47.963 -07 000000455 INF: FPGA: Recv ZSGSRD 30572
17-03-18 02:11:47.973 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:47.973 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:47.973 -07 000000629 INF: FPGA: Recv ZSGSRD 30569
17-03-18 02:11:47.983 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:47.983 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:47.983 -07 000000502 INF: FPGA: Recv ZSGSRD 30572
17-03-18 02:11:47.993 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:47.993 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:47.993 -07 000000579 INF: FPGA: Recv ZSGSRD 30564
17-03-18 02:11:48.003 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:48.003 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:48.003 -07 000000590 INF: FPGA: Recv ZSGSRD 30567
17-03-18 02:11:48.013 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:48.013 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:48.013 -07 000000629 INF: FPGA: Recv ZSGSRD 30565
17-03-18 02:11:48.023 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:48.023 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:48.023 -07 000000576 INF: FPGA: Recv ZSGSRD 30563
17-03-18 02:11:48.033 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:48.033 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:48.033 -07 000000626 INF: FPGA: Recv ZSGSRD 30564
17-03-18 02:11:48.043 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:48.043 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:11:48.043 -07 000000512 INF: FPGA: Recv ZPIEZORD 26409
17-03-18 02:11:48.053 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:48.053 -07 000000424 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.556 V. Piezo Error = -9.1 V.
17-03-18 02:11:48.053 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.7 um, Read 10 ADC samples: Avg = 30567 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30566 (-135.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30563 (-135.9 uncal um), Max = 30572 (-135.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:11:48.053 -07 000000424 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30567, posNoise = 5, negNoise = 4
17-03-18 02:11:48.053 -07 000000424 INF: Z Motor: After move to -0.136686, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:11:48.053 -07 000000424 INF: Z Motor: Settle wait time = 1455 ms, measure time = 101 ms (allowed 150 ms), total time = 1556 ms
17-03-18 02:11:48.053 -07 000000424 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 02:11:48.103 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 02:11:48.103 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:11:48.103 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:11:48.103 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:11:48.103 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:11:48.103 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:11:48.103 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:11:48.103 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:11:48.103 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:11:48.103 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:11:48.113 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:11:48.113 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:11:48.123 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:11:48.123 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:11:48.123 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:11:48.173 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:11:48.473 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:11:48.473 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:11:48.473 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:11:48.473 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:11:48.503 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:11:48.513 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 02:11:48.513 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 385 ms overall
17-03-18 02:11:48.583 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:11:48.583 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:48.593 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:11:48.593 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:11:48.613 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:11:48.613 -07 000000606 INF: Autofocus start
17-03-18 02:11:48.613 -07 000000606 INF: MeasureProfile start
17-03-18 02:11:48.613 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:11:48.623 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:11:48.623 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:11:48.623 -07 000000606 INF: MeasureProfile done
17-03-18 02:11:48.623 -07 000000606 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:11:48.623 -07 000000606 INF: Autofocus finished
17-03-18 02:11:48.823 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:11:48.823 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:11:48.823 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.136692244548342. ----------
17-03-18 02:11:48.833 -07 000000610 INF: Cycle	96	Tile	11	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:11:48.833 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28383, sync = True, waitForSettling = True)
17-03-18 02:11:48.833 -07 000000610 INF: Z Motor: Moving to -0.129929 mm, started at -0.136692 mm, distance = 6.76 um
17-03-18 02:11:48.833 -07 000000610 INF: FPGA: Xmit ZDACW 28383\n [Z Motor]
17-03-18 02:11:48.833 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:11:48.843 -07 000000610 INF: FPGA: 'ZDACW 28383' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:11:48.843 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:11:48.843 -07 000000461 INF: FPGA: Recv ZDACR 28383
17-03-18 02:11:48.853 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:48.853 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:11:49.003 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:49.003 -07 000000561 INF: FPGA: Recv ZSGSRD 29517
17-03-18 02:11:49.013 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:49.013 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:49.013 -07 000000629 INF: FPGA: Recv ZSGSRD 29507
17-03-18 02:11:49.023 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:49.023 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:49.023 -07 000000502 INF: FPGA: Recv ZSGSRD 29518
17-03-18 02:11:49.033 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:49.033 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:49.033 -07 000000512 INF: FPGA: Recv ZSGSRD 29515
17-03-18 02:11:49.043 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:49.043 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:49.043 -07 000000606 INF: FPGA: Recv ZSGSRD 29514
17-03-18 02:11:49.053 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:49.053 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:49.053 -07 000000455 INF: FPGA: Recv ZSGSRD 29517
17-03-18 02:11:49.063 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:49.063 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:49.063 -07 000000590 INF: FPGA: Recv ZSGSRD 29512
17-03-18 02:11:49.073 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:49.073 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:49.073 -07 000000502 INF: FPGA: Recv ZSGSRD 29519
17-03-18 02:11:49.083 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:49.083 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:49.083 -07 000000512 INF: FPGA: Recv ZSGSRD 29512
17-03-18 02:11:49.093 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:49.093 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:49.093 -07 000000461 INF: FPGA: Recv ZSGSRD 29516
17-03-18 02:11:49.103 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:49.103 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:11:49.103 -07 000000576 INF: FPGA: Recv ZPIEZORD 25065
17-03-18 02:11:49.113 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:49.113 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.331 V. Piezo Error = -9.8 V.
17-03-18 02:11:49.113 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29515 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29516 (-129.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29507 (-129.1 uncal um), Max = 29519 (-129.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:11:49.113 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29515, posNoise = 4, negNoise = 8
17-03-18 02:11:49.113 -07 000000610 INF: Z Motor: After move to -0.129929, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:11:49.113 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:11:49.113 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:11:49.113 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:11:49.113 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:11:49.113 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:11:49.113 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:11:49.113 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:11:49.113 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:11:49.113 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:11:49.113 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:11:49.113 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:11:49.113 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:11:49.113 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:11:49.123 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:11:49.123 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:11:49.123 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:11:49.123 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:11:49.123 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:11:49.123 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:11:49.133 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:11:49.133 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:11:49.133 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28560 150\n [Camera]
17-03-18 02:11:49.333 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:11:49.723 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:11:49.723 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:11:49.723 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:11:49.723 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:11:49.723 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-18 02:11:49.723 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:11:49.723 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:11:49.723 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:11:49.723 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:11:49.723 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:11:49.913 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28560 778
17-03-18 02:11:50.063 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:11:50.103 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:11:50.103 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:11:50.103 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:50.103 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:11:50.103 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:11:50.103 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:50.103 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:50.103 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:11:50.113 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:50.113 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:11:50.253 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:11:50.253 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:11:50.253 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:11:50.373 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:11:50.373 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:11:50.373 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:11:50.383 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:11:50.383 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:11:50.383 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:11:50.383 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:11:50.443 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:11:50.443 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:11:50.443 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28560 150' command took 4 ms to send, 1309 ms to get response, and 1317 ms overall
17-03-18 02:11:50.453 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:11:50.453 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.12993397337521. ------
17-03-18 02:11:50.453 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13668 mm
17-03-18 02:11:50.453 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:11:50.453 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:11:50.453 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 02:11:50.453 -07 000000430 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-18 02:11:50.453 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 29858, sync = True, waitForSettling = False)
17-03-18 02:11:50.453 -07 000000455 INF: Z Motor: Moving to -0.136681 mm, started at -0.129934 mm, distance = -6.75 um
17-03-18 02:11:50.453 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:11:50.463 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:11:50.463 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:50.463 -07 000000467 INF: FPGA: Recv YRDPOS 139685
17-03-18 02:11:50.473 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:11:50.473 -07 000000430 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:50.473 -07 000000430 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:11:50.473 -07 000000455 INF: FPGA: Xmit ZDACW 29858\n [Z Motor]
17-03-18 02:11:50.473 -07 000000430 INF: Y Motor: Moving 1339 steps-14
17-03-18 02:11:50.473 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:11:50.483 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:11:50.483 -07 000000455 INF: FPGA: 'ZDACW 29858' command took 3 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:11:50.493 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:11:50.503 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:11:50.503 -07 000000629 INF: FPGA: Recv ZDACR 29858
17-03-18 02:11:50.513 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:11:50.513 -07 000000455 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 02:11:50.683 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:11:50.683 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 223 ms overall
17-03-18 02:11:50.773 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 02:11:50.773 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:11:50.783 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:50.783 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 02:11:50.783 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:11:50.783 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:50.783 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:50.783 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 526 ms.
17-03-18 02:11:50.783 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:50.793 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 02:11:50.863 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 02:11:50.863 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 02:11:50.913 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:50.913 -07 000000579 INF: FPGA: Recv YRDPOS 141368
17-03-18 02:11:50.923 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:11:50.923 -07 000000430 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:50.923 -07 000000430 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 02:11:50.923 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.837 mm, average velocity = 2.119 mm/sec
17-03-18 02:11:51.463 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:11:51.463 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:11:51.873 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:51.873 -07 000000591 INF: FPGA: Recv YRDPOS 141368
17-03-18 02:11:51.883 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:11:51.883 -07 000000430 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:51.903 -07 000000430 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:11:51.903 -07 000000430 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:11:51.903 -07 000000430 INF: Y Motor: Moved to 69.0273 after 1450 ms (table move)
17-03-18 02:11:51.913 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136681 mm (DAC = 29858)
17-03-18 02:11:51.913 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:51.913 -07 000000444 INF: FPGA: Recv ZSGSRD 30566
17-03-18 02:11:51.923 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:11:51.923 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:51.923 -07 000000591 INF: FPGA: Recv ZSGSRD 30567
17-03-18 02:11:51.933 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:51.933 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:51.933 -07 000000606 INF: FPGA: Recv ZSGSRD 30565
17-03-18 02:11:51.943 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:51.943 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:51.943 -07 000000590 INF: FPGA: Recv ZSGSRD 30569
17-03-18 02:11:51.953 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:51.953 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:51.953 -07 000000561 INF: FPGA: Recv ZSGSRD 30567
17-03-18 02:11:51.963 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:51.963 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:51.963 -07 000000512 INF: FPGA: Recv ZSGSRD 30566
17-03-18 02:11:51.973 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:51.973 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:51.973 -07 000000461 INF: FPGA: Recv ZSGSRD 30566
17-03-18 02:11:51.983 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:51.983 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:51.983 -07 000000590 INF: FPGA: Recv ZSGSRD 30564
17-03-18 02:11:51.993 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:51.993 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:51.993 -07 000000462 INF: FPGA: Recv ZSGSRD 30564
17-03-18 02:11:52.003 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:52.003 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:52.003 -07 000000430 INF: FPGA: Recv ZSGSRD 30565
17-03-18 02:11:52.013 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:52.013 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:11:52.013 -07 000000606 INF: FPGA: Recv ZPIEZORD 26433
17-03-18 02:11:52.023 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:52.023 -07 000000502 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.556 V. Piezo Error = -9.1 V.
17-03-18 02:11:52.023 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.7 um, Read 10 ADC samples: Avg = 30566 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30566 (-135.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 30564 (-135.9 uncal um), Max = 30569 (-135.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 02:11:52.023 -07 000000502 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30566, posNoise = 3, negNoise = 2
17-03-18 02:11:52.023 -07 000000502 INF: Z Motor: After move to -0.136681, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:11:52.023 -07 000000502 INF: Z Motor: Settle wait time = 1454 ms, measure time = 109 ms (allowed 150 ms), total time = 1563 ms
17-03-18 02:11:52.023 -07 000000502 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:11:52.073 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 02:11:52.073 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:11:52.073 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:11:52.073 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:11:52.073 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:11:52.073 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:11:52.073 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:11:52.073 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:11:52.073 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:11:52.073 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:11:52.083 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:11:52.083 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:11:52.093 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:11:52.093 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:11:52.093 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:11:52.143 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:11:52.343 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 3.994908,
17-03-18 02:11:52.443 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:11:52.443 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:11:52.443 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:11:52.443 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:11:52.483 -07 000000461 INF: FPGA: Recv @CAMSNAP 381
17-03-18 02:11:52.483 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 02:11:52.483 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 384 ms to get response, and 386 ms overall
17-03-18 02:11:52.573 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:11:52.573 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:52.573 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:11:52.573 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:11:52.583 -07 000000430 INF: Autofocus start
17-03-18 02:11:52.583 -07 000000430 INF: MeasureProfile start
17-03-18 02:11:52.583 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:11:52.583 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:11:52.593 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:11:52.593 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:11:52.593 -07 000000430 INF: MeasureProfile done
17-03-18 02:11:52.593 -07 000000430 INF: X=-11  Z correction [um]=-0.05694899
17-03-18 02:11:52.593 -07 000000430 INF: Autofocus finished
17-03-18 02:11:52.793 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:11:52.793 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:11:52.793 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.1366858203362. ----------
17-03-18 02:11:52.793 -07 000000610 INF: Cycle	96	Tile	12	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:11:52.803 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28358, sync = True, waitForSettling = True)
17-03-18 02:11:52.803 -07 000000610 INF: Z Motor: Moving to -0.129815 mm, started at -0.136686 mm, distance = 6.87 um
17-03-18 02:11:52.803 -07 000000610 INF: FPGA: Xmit ZDACW 28358\n [Z Motor]
17-03-18 02:11:52.803 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:11:52.813 -07 000000610 INF: FPGA: 'ZDACW 28358' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:52.813 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:11:52.813 -07 000000590 INF: FPGA: Recv ZDACR 28358
17-03-18 02:11:52.823 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:52.823 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:11:52.973 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:52.973 -07 000000579 INF: FPGA: Recv ZSGSRD 29502
17-03-18 02:11:52.983 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:52.983 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:52.983 -07 000000444 INF: FPGA: Recv ZSGSRD 29500
17-03-18 02:11:52.993 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:52.993 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:52.993 -07 000000629 INF: FPGA: Recv ZSGSRD 29501
17-03-18 02:11:53.003 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:11:53.003 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:53.003 -07 000000512 INF: FPGA: Recv ZSGSRD 29493
17-03-18 02:11:53.013 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:53.013 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:53.013 -07 000000461 INF: FPGA: Recv ZSGSRD 29500
17-03-18 02:11:53.023 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:53.023 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:53.023 -07 000000455 INF: FPGA: Recv ZSGSRD 29500
17-03-18 02:11:53.033 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:53.033 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:53.033 -07 000000569 INF: FPGA: Recv ZSGSRD 29497
17-03-18 02:11:53.043 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:53.043 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:53.043 -07 000000502 INF: FPGA: Recv ZSGSRD 29499
17-03-18 02:11:53.053 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:53.053 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:53.053 -07 000000606 INF: FPGA: Recv ZSGSRD 29503
17-03-18 02:11:53.063 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:53.063 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:53.063 -07 000000461 INF: FPGA: Recv ZSGSRD 29497
17-03-18 02:11:53.073 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:53.073 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:11:53.073 -07 000000462 INF: FPGA: Recv ZPIEZORD 25036
17-03-18 02:11:53.083 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:53.083 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.327 V. Piezo Error = -9.8 V.
17-03-18 02:11:53.083 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29499 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29500 (-129.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29493 (-129.0 uncal um), Max = 29503 (-129.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:11:53.083 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29499, posNoise = 4, negNoise = 6
17-03-18 02:11:53.083 -07 000000610 INF: Z Motor: After move to -0.129815, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:11:53.083 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:11:53.083 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:11:53.083 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:11:53.083 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:11:53.083 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:11:53.083 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:11:53.083 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:11:53.083 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:11:53.083 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:11:53.083 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:11:53.083 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:11:53.083 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:11:53.083 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:11:53.083 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:11:53.083 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:11:53.083 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:11:53.083 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:11:53.093 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:11:53.093 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 02:11:53.093 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:11:53.093 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:11:53.103 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28535 150\n [Camera]
17-03-18 02:11:53.303 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:11:53.693 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:11:53.693 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:11:53.693 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:11:53.693 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:11:53.693 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-18 02:11:53.693 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:11:53.693 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:11:53.693 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:11:53.693 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:11:53.693 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:11:53.883 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28535 778
17-03-18 02:11:54.033 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:11:54.073 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 02:11:54.073 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 02:11:54.073 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:54.073 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:11:54.073 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:11:54.073 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:54.083 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:54.083 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:54.083 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:11:54.083 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:11:54.223 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:11:54.223 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:11:54.223 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:11:54.333 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:11:54.333 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:11:54.333 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:11:54.343 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:11:54.343 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:11:54.343 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:11:54.343 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:11:54.413 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:11:54.413 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:11:54.413 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28535 150' command took 2 ms to send, 1308 ms to get response, and 1316 ms overall
17-03-18 02:11:54.423 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:11:54.423 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.129831185980941. ------
17-03-18 02:11:54.423 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:11:54.423 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13624 mm
17-03-18 02:11:54.423 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:11:54.423 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:11:54.423 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 29762, sync = True, waitForSettling = False)
17-03-18 02:11:54.423 -07 000000629 INF: Z Motor: Moving to -0.136242 mm, started at -0.129831 mm, distance = -6.41 um
17-03-18 02:11:54.423 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 02:11:54.423 -07 000000467 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 02:11:54.433 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:11:54.433 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:54.433 -07 000000591 INF: FPGA: Recv YRDPOS 141369
17-03-18 02:11:54.443 -07 000000629 INF: FPGA: Xmit ZDACW 29762\n [Z Motor]
17-03-18 02:11:54.443 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:11:54.443 -07 000000467 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:54.443 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:11:54.443 -07 000000467 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:11:54.443 -07 000000467 INF: Y Motor: Moving 1352 steps-31
17-03-18 02:11:54.453 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:11:54.453 -07 000000629 INF: FPGA: 'ZDACW 29762' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:11:54.463 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:11:54.463 -07 000000590 INF: FPGA: Recv ZDACR 29762
17-03-18 02:11:54.473 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:11:54.473 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:11:54.473 -07 000000629 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 02:11:54.653 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:11:54.653 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:11:54.723 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 02:11:54.723 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 02:11:54.723 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:54.723 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 02:11:54.723 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 02:11:54.723 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:54.733 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:11:54.733 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:11:54.733 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 505 ms.
17-03-18 02:11:54.743 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:11:54.843 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 02:11:54.843 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 399 ms overall
17-03-18 02:11:54.893 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:54.893 -07 000000461 INF: FPGA: Recv YRDPOS 143080
17-03-18 02:11:54.903 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:11:54.903 -07 000000467 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:54.903 -07 000000467 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:11:54.903 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.845 mm, average velocity = 2.118 mm/sec
17-03-18 02:11:55.853 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:55.853 -07 000000606 INF: FPGA: Recv YRDPOS 143080
17-03-18 02:11:55.863 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:11:55.863 -07 000000467 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:55.883 -07 000000467 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:11:55.883 -07 000000467 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:11:55.883 -07 000000467 INF: Y Motor: Moved to 69.8633 after 1459 ms (table move)
17-03-18 02:11:55.893 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136242 mm (DAC = 29762)
17-03-18 02:11:55.893 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:55.893 -07 000000424 INF: FPGA: Recv ZSGSRD 30502
17-03-18 02:11:55.903 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:55.903 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:55.903 -07 000000606 INF: FPGA: Recv ZSGSRD 30496
17-03-18 02:11:55.913 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:55.913 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:55.913 -07 000000430 INF: FPGA: Recv ZSGSRD 30502
17-03-18 02:11:55.923 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:55.923 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:55.923 -07 000000455 INF: FPGA: Recv ZSGSRD 30502
17-03-18 02:11:55.933 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:55.933 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:55.933 -07 000000579 INF: FPGA: Recv ZSGSRD 30498
17-03-18 02:11:55.943 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:55.943 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:55.943 -07 000000591 INF: FPGA: Recv ZSGSRD 30498
17-03-18 02:11:55.953 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:55.953 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:55.953 -07 000000561 INF: FPGA: Recv ZSGSRD 30492
17-03-18 02:11:55.963 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:55.963 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:55.963 -07 000000444 INF: FPGA: Recv ZSGSRD 30493
17-03-18 02:11:55.973 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:55.973 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:55.973 -07 000000569 INF: FPGA: Recv ZSGSRD 30502
17-03-18 02:11:55.983 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:55.983 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:55.983 -07 000000461 INF: FPGA: Recv ZSGSRD 30493
17-03-18 02:11:55.993 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:55.993 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:11:55.993 -07 000000590 INF: FPGA: Recv ZPIEZORD 26348
17-03-18 02:11:56.003 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:56.003 -07 000000502 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.541 V. Piezo Error = -9.1 V.
17-03-18 02:11:56.003 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.2 um, Read 10 ADC samples: Avg = 30498 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30498 (-135.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30492 (-135.4 uncal um), Max = 30502 (-135.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:11:56.003 -07 000000502 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30498, posNoise = 4, negNoise = 6
17-03-18 02:11:56.003 -07 000000502 INF: Z Motor: After move to -0.136242, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:11:56.003 -07 000000502 INF: Z Motor: Settle wait time = 1462 ms, measure time = 110 ms (allowed 150 ms), total time = 1572 ms
17-03-18 02:11:56.003 -07 000000502 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:11:56.043 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 02:11:56.043 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:11:56.043 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:11:56.043 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:11:56.043 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:11:56.043 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:11:56.043 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:11:56.043 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:11:56.043 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:11:56.043 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:11:56.053 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:11:56.053 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:11:56.063 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 02:11:56.063 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 02:11:56.063 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:11:56.103 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:11:56.403 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:11:56.403 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:11:56.413 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:11:56.413 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:11:56.443 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:11:56.443 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 02:11:56.443 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 02:11:56.463 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:11:56.523 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:11:56.523 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:56.533 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:11:56.533 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:11:56.533 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:11:56.543 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:11:56.543 -07 000000424 INF: Autofocus start
17-03-18 02:11:56.543 -07 000000424 INF: MeasureProfile start
17-03-18 02:11:56.543 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:11:56.553 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:11:56.553 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:11:56.553 -07 000000424 INF: MeasureProfile done
17-03-18 02:11:56.553 -07 000000424 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:11:56.553 -07 000000424 INF: Autofocus finished
17-03-18 02:11:56.753 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:11:56.753 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:11:56.753 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.136248973910561. ----------
17-03-18 02:11:56.763 -07 000000610 INF: Cycle	96	Tile	13	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:11:56.763 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28257, sync = True, waitForSettling = True)
17-03-18 02:11:56.763 -07 000000610 INF: Z Motor: Moving to -0.129352 mm, started at -0.136249 mm, distance = 6.90 um
17-03-18 02:11:56.763 -07 000000610 INF: FPGA: Xmit ZDACW 28257\n [Z Motor]
17-03-18 02:11:56.763 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:11:56.773 -07 000000610 INF: FPGA: 'ZDACW 28257' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:11:56.773 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:11:56.773 -07 000000590 INF: FPGA: Recv ZDACR 28257
17-03-18 02:11:56.783 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:56.783 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:11:56.933 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:56.933 -07 000000444 INF: FPGA: Recv ZSGSRD 29428
17-03-18 02:11:56.943 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:56.943 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:56.943 -07 000000455 INF: FPGA: Recv ZSGSRD 29432
17-03-18 02:11:56.953 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:56.953 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:56.953 -07 000000502 INF: FPGA: Recv ZSGSRD 29425
17-03-18 02:11:56.963 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:56.963 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:56.963 -07 000000430 INF: FPGA: Recv ZSGSRD 29424
17-03-18 02:11:56.973 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:56.973 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:56.973 -07 000000576 INF: FPGA: Recv ZSGSRD 29426
17-03-18 02:11:56.983 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:56.983 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:56.983 -07 000000424 INF: FPGA: Recv ZSGSRD 29423
17-03-18 02:11:56.993 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:11:56.993 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:56.993 -07 000000606 INF: FPGA: Recv ZSGSRD 29421
17-03-18 02:11:57.003 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:57.003 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:57.003 -07 000000512 INF: FPGA: Recv ZSGSRD 29426
17-03-18 02:11:57.013 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:57.013 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:57.013 -07 000000461 INF: FPGA: Recv ZSGSRD 29434
17-03-18 02:11:57.023 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:57.023 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:57.023 -07 000000462 INF: FPGA: Recv ZSGSRD 29430
17-03-18 02:11:57.033 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:57.033 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:11:57.033 -07 000000444 INF: FPGA: Recv ZPIEZORD 24961
17-03-18 02:11:57.043 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:57.043 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.312 V. Piezo Error = -9.8 V.
17-03-18 02:11:57.043 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29427 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29426 (-128.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29421 (-128.6 uncal um), Max = 29434 (-128.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:11:57.043 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29427, posNoise = 7, negNoise = 6
17-03-18 02:11:57.043 -07 000000610 INF: Z Motor: After move to -0.129352, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:11:57.043 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:11:57.043 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:11:57.043 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:11:57.043 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:11:57.043 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:11:57.043 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:11:57.043 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:11:57.043 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:11:57.043 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:11:57.043 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:11:57.043 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:11:57.043 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:11:57.043 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:11:57.043 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:11:57.043 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:11:57.043 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:11:57.043 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:11:57.053 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:11:57.053 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:11:57.053 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:11:57.053 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:11:57.063 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28433 150\n [Camera]
17-03-18 02:11:57.263 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:11:57.653 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:11:57.653 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:11:57.653 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:11:57.653 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:11:57.653 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-18 02:11:57.663 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:11:57.663 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:11:57.663 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:11:57.663 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:11:57.663 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:11:57.703 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 3.985358,
17-03-18 02:11:57.853 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28433 778
17-03-18 02:11:57.993 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:11:58.033 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:11:58.033 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:11:58.033 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:58.033 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:11:58.043 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:11:58.043 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 02:11:58.043 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 02:11:58.043 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:58.043 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:58.053 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:11:58.183 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:11:58.183 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:11:58.193 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:11:58.303 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:11:58.303 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:11:58.303 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:11:58.313 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:11:58.313 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:11:58.313 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:11:58.313 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:11:58.383 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-18 02:11:58.383 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:11:58.383 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28433 150' command took 2 ms to send, 1314 ms to get response, and 1320 ms overall
17-03-18 02:11:58.383 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:11:58.383 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.129368642706735. ------
17-03-18 02:11:58.393 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:11:58.393 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13584 mm
17-03-18 02:11:58.393 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:11:58.393 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:11:58.393 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 02:11:58.393 -07 000000576 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-18 02:11:58.393 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29673, sync = True, waitForSettling = False)
17-03-18 02:11:58.393 -07 000000512 INF: Z Motor: Moving to -0.135834 mm, started at -0.129369 mm, distance = -6.47 um
17-03-18 02:11:58.403 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:58.403 -07 000000512 INF: FPGA: Xmit ZDACW 29673\n [Z Motor]
17-03-18 02:11:58.403 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:11:58.413 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:58.413 -07 000000512 INF: FPGA: 'ZDACW 29673' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:11:58.413 -07 000000462 INF: FPGA: Recv YRDPOS 143081
17-03-18 02:11:58.423 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:11:58.423 -07 000000576 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:58.423 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:11:58.423 -07 000000576 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:11:58.423 -07 000000576 INF: Y Motor: Moving 1342 steps-19
17-03-18 02:11:58.433 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:11:58.433 -07 000000462 INF: FPGA: Recv ZDACR 29673
17-03-18 02:11:58.443 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:11:58.443 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:11:58.443 -07 000000512 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 02:11:58.623 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:11:58.623 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 195 ms to get response, and 224 ms overall
17-03-18 02:11:58.703 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 02:11:58.703 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:11:58.703 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:58.703 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 02:11:58.703 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:11:58.703 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:11:58.713 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:58.713 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:11:58.713 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-18 02:11:58.713 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:11:58.813 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 02:11:58.813 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 02:11:58.863 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:58.863 -07 000000430 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:11:58.873 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:11:58.873 -07 000000576 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:58.873 -07 000000576 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:11:58.873 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.839 mm, average velocity = 2.141 mm/sec
17-03-18 02:11:59.823 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:11:59.823 -07 000000462 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:11:59.833 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:59.833 -07 000000576 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:11:59.853 -07 000000576 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:11:59.853 -07 000000576 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:11:59.853 -07 000000576 INF: Y Motor: Moved to 70.6885 after 1463 ms (table move)
17-03-18 02:11:59.863 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135834 mm (DAC = 29673)
17-03-18 02:11:59.863 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:59.863 -07 000000561 INF: FPGA: Recv ZSGSRD 30437
17-03-18 02:11:59.873 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:59.873 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:59.873 -07 000000590 INF: FPGA: Recv ZSGSRD 30429
17-03-18 02:11:59.883 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:59.883 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:59.883 -07 000000462 INF: FPGA: Recv ZSGSRD 30435
17-03-18 02:11:59.893 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:59.893 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:59.893 -07 000000579 INF: FPGA: Recv ZSGSRD 30443
17-03-18 02:11:59.903 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:59.903 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:59.903 -07 000000424 INF: FPGA: Recv ZSGSRD 30436
17-03-18 02:11:59.913 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:59.913 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:59.913 -07 000000502 INF: FPGA: Recv ZSGSRD 30432
17-03-18 02:11:59.923 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:59.923 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:59.923 -07 000000576 INF: FPGA: Recv ZSGSRD 30430
17-03-18 02:11:59.933 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:59.933 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:59.933 -07 000000561 INF: FPGA: Recv ZSGSRD 30430
17-03-18 02:11:59.943 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:59.943 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:59.943 -07 000000462 INF: FPGA: Recv ZSGSRD 30435
17-03-18 02:11:59.953 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:59.953 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:11:59.953 -07 000000591 INF: FPGA: Recv ZSGSRD 30436
17-03-18 02:11:59.963 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:59.963 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:11:59.963 -07 000000626 INF: FPGA: Recv ZPIEZORD 26310
17-03-18 02:11:59.973 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:11:59.973 -07 000000606 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.528 V. Piezo Error = -9.1 V.
17-03-18 02:11:59.973 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.8 um, Read 10 ADC samples: Avg = 30434 (-135.0 uncal um), Error = 0.8 uncal um, Median = 30435 (-135.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30429 (-135.0 uncal um), Max = 30443 (-135.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:11:59.973 -07 000000606 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30434, posNoise = 9, negNoise = 5
17-03-18 02:11:59.973 -07 000000606 INF: Z Motor: After move to -0.135834, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:11:59.973 -07 000000606 INF: Z Motor: Settle wait time = 1466 ms, measure time = 110 ms (allowed 150 ms), total time = 1576 ms
17-03-18 02:11:59.973 -07 000000606 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:12:00.013 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 02:12:00.013 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:12:00.023 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:12:00.023 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:12:00.033 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:12:00.033 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:12:00.033 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:12:00.033 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:12:00.033 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:12:00.033 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:12:00.033 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:12:00.033 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:12:00.043 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 02:12:00.043 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 02:12:00.053 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:12:00.093 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:12:00.393 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:12:00.393 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:12:00.393 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:12:00.393 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:12:00.433 -07 000000576 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:12:00.433 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 02:12:00.433 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:12:00.513 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:12:00.513 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:12:00.513 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:12:00.513 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:12:00.533 -07 000000512 INF: Autofocus start
17-03-18 02:12:00.533 -07 000000512 INF: MeasureProfile start
17-03-18 02:12:00.533 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:12:00.533 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:12:00.543 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:12:00.543 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:12:00.543 -07 000000512 INF: MeasureProfile done
17-03-18 02:12:00.543 -07 000000512 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:12:00.543 -07 000000512 INF: Autofocus finished
17-03-18 02:12:00.743 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:12:00.743 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:12:00.743 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.135837824333488. ----------
17-03-18 02:12:00.753 -07 000000610 INF: Cycle	96	Tile	14	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:12:00.753 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28181, sync = True, waitForSettling = True)
17-03-18 02:12:00.753 -07 000000610 INF: Z Motor: Moving to -0.129004 mm, started at -0.135838 mm, distance = 6.83 um
17-03-18 02:12:00.753 -07 000000610 INF: FPGA: Xmit ZDACW 28181\n [Z Motor]
17-03-18 02:12:00.753 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:12:00.763 -07 000000610 INF: FPGA: 'ZDACW 28181' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:12:00.763 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:12:00.763 -07 000000461 INF: FPGA: Recv ZDACR 28181
17-03-18 02:12:00.773 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:00.773 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:12:00.923 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:00.923 -07 000000569 INF: FPGA: Recv ZSGSRD 29373
17-03-18 02:12:00.933 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:12:00.933 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:00.933 -07 000000467 INF: FPGA: Recv ZSGSRD 29373
17-03-18 02:12:00.943 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:00.943 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:00.943 -07 000000430 INF: FPGA: Recv ZSGSRD 29374
17-03-18 02:12:00.953 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:00.953 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:00.953 -07 000000455 INF: FPGA: Recv ZSGSRD 29367
17-03-18 02:12:00.963 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:00.963 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:00.963 -07 000000579 INF: FPGA: Recv ZSGSRD 29371
17-03-18 02:12:00.973 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:00.973 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:00.973 -07 000000512 INF: FPGA: Recv ZSGSRD 29372
17-03-18 02:12:00.983 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:00.983 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:00.983 -07 000000462 INF: FPGA: Recv ZSGSRD 29373
17-03-18 02:12:00.993 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:00.993 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:00.993 -07 000000629 INF: FPGA: Recv ZSGSRD 29375
17-03-18 02:12:01.003 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:01.003 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:01.003 -07 000000590 INF: FPGA: Recv ZSGSRD 29370
17-03-18 02:12:01.013 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:01.013 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:01.013 -07 000000626 INF: FPGA: Recv ZSGSRD 29369
17-03-18 02:12:01.023 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:01.023 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:12:01.023 -07 000000462 INF: FPGA: Recv ZPIEZORD 24925
17-03-18 02:12:01.033 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:01.033 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.300 V. Piezo Error = -9.8 V.
17-03-18 02:12:01.033 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.0 um, Read 10 ADC samples: Avg = 29372 (-128.2 uncal um), Error = 0.8 uncal um, Median = 29372 (-128.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29367 (-128.2 uncal um), Max = 29375 (-128.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:12:01.033 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29372, posNoise = 3, negNoise = 5
17-03-18 02:12:01.033 -07 000000610 INF: Z Motor: After move to -0.129004, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:12:01.033 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:12:01.033 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:12:01.033 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:12:01.033 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:12:01.033 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:12:01.033 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:12:01.033 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:12:01.033 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:12:01.033 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:12:01.033 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:12:01.033 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:12:01.033 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:12:01.033 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:12:01.033 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:12:01.033 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:12:01.033 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:12:01.033 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:12:01.043 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:12:01.043 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:12:01.043 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:12:01.043 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:12:01.053 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28357 150\n [Camera]
17-03-18 02:12:01.253 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:12:01.463 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:12:01.463 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:12:01.643 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:12:01.643 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:12:01.643 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:12:01.643 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:12:01.643 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-18 02:12:01.643 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:12:01.643 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:12:01.643 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:12:01.643 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:12:01.643 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:12:01.833 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28357 778
17-03-18 02:12:01.983 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:12:02.033 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 02:12:02.033 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:12:02.033 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:12:02.033 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 02:12:02.033 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:12:02.033 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:12:02.043 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:12:02.043 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:12:02.043 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:12:02.043 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:12:02.173 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:12:02.173 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:12:02.173 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:12:02.283 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:12:02.283 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:12:02.283 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:12:02.293 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:12:02.293 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:12:02.293 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:12:02.293 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:12:02.363 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:12:02.363 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:12:02.363 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28357 150' command took 2 ms to send, 1309 ms to get response, and 1317 ms overall
17-03-18 02:12:02.373 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:12:02.373 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.129015311038938. ------
17-03-18 02:12:02.373 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:12:02.373 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13568 mm
17-03-18 02:12:02.373 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:12:02.373 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 02:12:02.373 -07 000000579 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 02:12:02.373 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29640, sync = True, waitForSettling = False)
17-03-18 02:12:02.373 -07 000000569 INF: Z Motor: Moving to -0.135683 mm, started at -0.129015 mm, distance = -6.67 um
17-03-18 02:12:02.373 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:12:02.383 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:12:02.383 -07 000000569 INF: FPGA: Xmit ZDACW 29640\n [Z Motor]
17-03-18 02:12:02.383 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:12:02.393 -07 000000569 INF: FPGA: 'ZDACW 29640' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:12:02.393 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:12:02.393 -07 000000430 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:12:02.403 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:12:02.403 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:12:02.403 -07 000000579 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:12:02.403 -07 000000579 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:12:02.403 -07 000000579 INF: Y Motor: Moving 1351 steps-29
17-03-18 02:12:02.413 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:12:02.413 -07 000000606 INF: FPGA: Recv ZDACR 29640
17-03-18 02:12:02.423 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:12:02.423 -07 000000569 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 02:12:02.423 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:12:02.603 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:12:02.603 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:12:02.683 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 02:12:02.683 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:12:02.683 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:12:02.683 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:12:02.683 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 02:12:02.683 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:12:02.683 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:12:02.693 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:12:02.693 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-18 02:12:02.693 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 02:12:02.793 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 02:12:02.793 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 02:12:02.843 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:12:02.843 -07 000000444 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:12:02.853 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:12:02.853 -07 000000579 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:12:02.853 -07 000000579 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:12:02.853 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.844 mm, average velocity = 2.137 mm/sec
17-03-18 02:12:03.063 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 3.989471,
17-03-18 02:12:03.803 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:12:03.803 -07 000000606 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:12:03.813 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:12:03.813 -07 000000579 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:12:03.833 -07 000000579 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:12:03.833 -07 000000579 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:12:03.833 -07 000000579 INF: Y Motor: Moved to 71.5190 after 1460 ms (table move)
17-03-18 02:12:03.843 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135683 mm (DAC = 29640)
17-03-18 02:12:03.843 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:03.843 -07 000000512 INF: FPGA: Recv ZSGSRD 30411
17-03-18 02:12:03.853 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:03.853 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:03.853 -07 000000424 INF: FPGA: Recv ZSGSRD 30409
17-03-18 02:12:03.863 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:03.863 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:03.863 -07 000000467 INF: FPGA: Recv ZSGSRD 30412
17-03-18 02:12:03.873 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:03.873 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:03.873 -07 000000462 INF: FPGA: Recv ZSGSRD 30416
17-03-18 02:12:03.883 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:03.883 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:03.883 -07 000000590 INF: FPGA: Recv ZSGSRD 30413
17-03-18 02:12:03.893 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:03.893 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:03.893 -07 000000579 INF: FPGA: Recv ZSGSRD 30414
17-03-18 02:12:03.903 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:03.903 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:03.903 -07 000000606 INF: FPGA: Recv ZSGSRD 30409
17-03-18 02:12:03.913 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:03.913 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:03.913 -07 000000626 INF: FPGA: Recv ZSGSRD 30408
17-03-18 02:12:03.923 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:03.923 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:03.923 -07 000000569 INF: FPGA: Recv ZSGSRD 30409
17-03-18 02:12:03.933 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:03.933 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:03.933 -07 000000629 INF: FPGA: Recv ZSGSRD 30409
17-03-18 02:12:03.943 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:03.943 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:12:03.943 -07 000000576 INF: FPGA: Recv ZPIEZORD 26297
17-03-18 02:12:03.953 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:03.953 -07 000000502 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.523 V. Piezo Error = -9.1 V.
17-03-18 02:12:03.953 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30411 (-134.9 uncal um), Error = 0.8 uncal um, Median = 30410 (-134.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30408 (-134.9 uncal um), Max = 30416 (-134.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:12:03.953 -07 000000502 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30411, posNoise = 5, negNoise = 3
17-03-18 02:12:03.953 -07 000000502 INF: Z Motor: After move to -0.135683, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:12:03.953 -07 000000502 INF: Z Motor: Settle wait time = 1463 ms, measure time = 110 ms (allowed 150 ms), total time = 1573 ms
17-03-18 02:12:03.953 -07 000000502 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:12:03.993 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 02:12:03.993 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:12:03.993 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:12:03.993 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:12:03.993 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:12:03.993 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:12:03.993 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:12:03.993 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:12:03.993 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:12:04.003 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:12:04.003 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:12:04.003 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:12:04.013 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:12:04.013 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 02:12:04.013 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:12:04.063 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:12:04.363 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:12:04.363 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:12:04.363 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:12:04.363 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:12:04.403 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:12:04.403 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 02:12:04.403 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 385 ms overall
17-03-18 02:12:04.493 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:12:04.493 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:12:04.493 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:12:04.493 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:12:04.503 -07 000000462 INF: Autofocus start
17-03-18 02:12:04.503 -07 000000462 INF: MeasureProfile start
17-03-18 02:12:04.503 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:12:04.503 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:12:04.513 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:12:04.513 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:12:04.513 -07 000000462 INF: MeasureProfile done
17-03-18 02:12:04.513 -07 000000462 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:12:04.513 -07 000000462 INF: Autofocus finished
17-03-18 02:12:04.713 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:12:04.713 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:12:04.713 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.135690067454227. ----------
17-03-18 02:12:04.713 -07 000000610 INF: Cycle	96	Tile	15	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:12:04.723 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28164, sync = True, waitForSettling = True)
17-03-18 02:12:04.723 -07 000000610 INF: Z Motor: Moving to -0.128927 mm, started at -0.135690 mm, distance = 6.76 um
17-03-18 02:12:04.723 -07 000000610 INF: FPGA: Xmit ZDACW 28164\n [Z Motor]
17-03-18 02:12:04.723 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:12:04.733 -07 000000610 INF: FPGA: 'ZDACW 28164' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:04.733 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:12:04.733 -07 000000512 INF: FPGA: Recv ZDACR 28164
17-03-18 02:12:04.743 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:04.743 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:12:04.893 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:04.893 -07 000000629 INF: FPGA: Recv ZSGSRD 29359
17-03-18 02:12:04.903 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:12:04.903 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:04.903 -07 000000461 INF: FPGA: Recv ZSGSRD 29364
17-03-18 02:12:04.913 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:04.913 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:04.913 -07 000000629 INF: FPGA: Recv ZSGSRD 29354
17-03-18 02:12:04.923 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:12:04.923 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:04.923 -07 000000462 INF: FPGA: Recv ZSGSRD 29357
17-03-18 02:12:04.933 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:04.933 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:04.933 -07 000000512 INF: FPGA: Recv ZSGSRD 29364
17-03-18 02:12:04.943 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:04.943 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:04.943 -07 000000561 INF: FPGA: Recv ZSGSRD 29357
17-03-18 02:12:04.953 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:04.953 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:04.953 -07 000000591 INF: FPGA: Recv ZSGSRD 29363
17-03-18 02:12:04.963 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:04.963 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:04.963 -07 000000579 INF: FPGA: Recv ZSGSRD 29353
17-03-18 02:12:04.973 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:04.973 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:04.973 -07 000000512 INF: FPGA: Recv ZSGSRD 29359
17-03-18 02:12:04.983 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:04.983 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:04.983 -07 000000455 INF: FPGA: Recv ZSGSRD 29361
17-03-18 02:12:04.993 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:04.993 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:12:04.993 -07 000000467 INF: FPGA: Recv ZPIEZORD 24904
17-03-18 02:12:05.003 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:05.003 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.298 V. Piezo Error = -9.8 V.
17-03-18 02:12:05.003 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29359 (-128.2 uncal um), Error = 0.8 uncal um, Median = 29359 (-128.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29353 (-128.1 uncal um), Max = 29364 (-128.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:12:05.003 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29359, posNoise = 5, negNoise = 6
17-03-18 02:12:05.003 -07 000000610 INF: Z Motor: After move to -0.128927, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:12:05.003 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:12:05.003 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:12:05.003 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:12:05.003 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:12:05.003 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:12:05.003 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:12:05.003 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:12:05.003 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:12:05.003 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:12:05.003 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:12:05.003 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:12:05.003 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:12:05.003 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:12:05.003 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:12:05.003 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:12:05.003 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:12:05.003 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:12:05.013 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:12:05.013 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:12:05.013 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:12:05.013 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:12:05.023 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28341 150\n [Camera]
17-03-18 02:12:05.223 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:12:05.613 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:12:05.613 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:12:05.613 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:12:05.613 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:12:05.613 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-18 02:12:05.613 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:12:05.613 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:12:05.623 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:12:05.623 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:12:05.623 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:12:05.803 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28341 778
17-03-18 02:12:05.953 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:12:06.003 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 02:12:06.003 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 02:12:06.003 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:12:06.003 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 02:12:06.003 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:12:06.003 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:12:06.003 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:12:06.003 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:12:06.003 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:12:06.013 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:12:06.143 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:12:06.143 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:12:06.143 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:12:06.263 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:12:06.263 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:12:06.263 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:12:06.273 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:12:06.273 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:12:06.273 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:12:06.273 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:12:06.333 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:12:06.343 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:12:06.343 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28341 150' command took 2 ms to send, 1310 ms to get response, and 1317 ms overall
17-03-18 02:12:06.343 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:12:06.343 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.128931796281095. ------
17-03-18 02:12:06.343 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13529 mm
17-03-18 02:12:06.343 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:12:06.343 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:12:06.343 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 02:12:06.343 -07 000000455 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 02:12:06.343 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 29553, sync = True, waitForSettling = False)
17-03-18 02:12:06.343 -07 000000461 INF: Z Motor: Moving to -0.135285 mm, started at -0.128932 mm, distance = -6.35 um
17-03-18 02:12:06.343 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:12:06.353 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:12:06.353 -07 000000461 INF: FPGA: Xmit ZDACW 29553\n [Z Motor]
17-03-18 02:12:06.353 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:12:06.363 -07 000000461 INF: FPGA: 'ZDACW 29553' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:12:06.363 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:12:06.373 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:12:06.373 -07 000000502 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:12:06.383 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:12:06.383 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 02:12:06.383 -07 000000455 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:12:06.383 -07 000000455 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:12:06.383 -07 000000455 INF: Y Motor: Moving 1350 steps-28
17-03-18 02:12:06.383 -07 000000579 INF: FPGA: Recv ZDACR 29553
17-03-18 02:12:06.393 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:12:06.393 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:12:06.393 -07 000000461 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 02:12:06.463 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:12:06.463 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:12:06.563 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:12:06.563 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 02:12:06.653 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 02:12:06.653 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 02:12:06.653 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:12:06.653 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 02:12:06.653 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 02:12:06.653 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:12:06.653 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:12:06.653 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:12:06.653 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 506 ms.
17-03-18 02:12:06.663 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:12:06.763 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 02:12:06.763 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:12:06.813 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:12:06.813 -07 000000590 INF: FPGA: Recv YRDPOS 148172
17-03-18 02:12:06.823 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:12:06.823 -07 000000455 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:12:06.823 -07 000000455 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 02:12:06.823 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.180 mm/sec
17-03-18 02:12:07.773 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:12:07.773 -07 000000569 INF: FPGA: Recv YRDPOS 148172
17-03-18 02:12:07.783 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:12:07.783 -07 000000455 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:12:07.803 -07 000000455 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:12:07.803 -07 000000455 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:12:07.803 -07 000000455 INF: Y Motor: Moved to 72.3496 after 1459 ms (table move)
17-03-18 02:12:07.813 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135285 mm (DAC = 29553)
17-03-18 02:12:07.813 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:07.813 -07 000000467 INF: FPGA: Recv ZSGSRD 30350
17-03-18 02:12:07.823 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:12:07.823 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:07.823 -07 000000561 INF: FPGA: Recv ZSGSRD 30346
17-03-18 02:12:07.833 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:07.833 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:07.833 -07 000000629 INF: FPGA: Recv ZSGSRD 30356
17-03-18 02:12:07.843 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:07.843 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:07.843 -07 000000576 INF: FPGA: Recv ZSGSRD 30351
17-03-18 02:12:07.853 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:07.853 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:07.853 -07 000000467 INF: FPGA: Recv ZSGSRD 30353
17-03-18 02:12:07.863 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:07.863 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:07.863 -07 000000444 INF: FPGA: Recv ZSGSRD 30349
17-03-18 02:12:07.873 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:07.873 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:07.873 -07 000000512 INF: FPGA: Recv ZSGSRD 30345
17-03-18 02:12:07.883 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:07.883 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:07.883 -07 000000590 INF: FPGA: Recv ZSGSRD 30350
17-03-18 02:12:07.893 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:07.893 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:07.893 -07 000000629 INF: FPGA: Recv ZSGSRD 30344
17-03-18 02:12:07.903 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:07.903 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:07.903 -07 000000561 INF: FPGA: Recv ZSGSRD 30350
17-03-18 02:12:07.913 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:07.913 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:12:07.913 -07 000000512 INF: FPGA: Recv ZPIEZORD 26203
17-03-18 02:12:07.923 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:07.923 -07 000000606 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.509 V. Piezo Error = -9.1 V.
17-03-18 02:12:07.923 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30349 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30350 (-134.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30344 (-134.5 uncal um), Max = 30356 (-134.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:12:07.923 -07 000000606 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30349, posNoise = 7, negNoise = 5
17-03-18 02:12:07.923 -07 000000606 INF: Z Motor: After move to -0.135285, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:12:07.923 -07 000000606 INF: Z Motor: Settle wait time = 1462 ms, measure time = 109 ms (allowed 150 ms), total time = 1571 ms
17-03-18 02:12:07.923 -07 000000606 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:12:07.973 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 02:12:07.973 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:12:07.973 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:12:07.973 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:12:07.973 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:12:07.973 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:12:07.973 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:12:07.973 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:12:07.973 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:12:07.973 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:12:07.983 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:12:07.983 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:12:07.993 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:12:07.993 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:12:08.003 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:12:08.043 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:12:08.343 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:12:08.343 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:12:08.343 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:12:08.343 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:12:08.383 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:12:08.383 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 02:12:08.383 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 391 ms overall
17-03-18 02:12:08.423 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 4.003063,
17-03-18 02:12:08.463 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 02:12:08.463 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:12:08.463 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:12:08.463 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 02:12:08.483 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:12:08.483 -07 000000462 INF: Autofocus start
17-03-18 02:12:08.483 -07 000000462 INF: MeasureProfile start
17-03-18 02:12:08.483 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:12:08.493 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:12:08.493 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:12:08.493 -07 000000462 INF: MeasureProfile done
17-03-18 02:12:08.493 -07 000000462 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:12:08.493 -07 000000462 INF: Autofocus finished
17-03-18 02:12:08.693 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:12:08.693 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:12:08.703 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.135291766301438. ----------
17-03-18 02:12:08.703 -07 000000610 INF: Cycle	96	Tile	16	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:12:08.703 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28061, sync = True, waitForSettling = True)
17-03-18 02:12:08.703 -07 000000610 INF: Z Motor: Moving to -0.128455 mm, started at -0.135292 mm, distance = 6.84 um
17-03-18 02:12:08.703 -07 000000610 INF: FPGA: Xmit ZDACW 28061\n [Z Motor]
17-03-18 02:12:08.713 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:12:08.713 -07 000000610 INF: FPGA: 'ZDACW 28061' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 02:12:08.713 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:12:08.713 -07 000000430 INF: FPGA: Recv ZDACR 28061
17-03-18 02:12:08.723 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:12:08.723 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:12:08.873 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:08.873 -07 000000424 INF: FPGA: Recv ZSGSRD 29290
17-03-18 02:12:08.883 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:12:08.883 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:08.883 -07 000000590 INF: FPGA: Recv ZSGSRD 29283
17-03-18 02:12:08.893 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:08.893 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:08.893 -07 000000512 INF: FPGA: Recv ZSGSRD 29286
17-03-18 02:12:08.903 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:08.903 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:08.903 -07 000000569 INF: FPGA: Recv ZSGSRD 29292
17-03-18 02:12:08.913 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:08.913 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:08.913 -07 000000462 INF: FPGA: Recv ZSGSRD 29283
17-03-18 02:12:08.923 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:08.923 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:08.923 -07 000000424 INF: FPGA: Recv ZSGSRD 29287
17-03-18 02:12:08.933 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:08.933 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:08.933 -07 000000590 INF: FPGA: Recv ZSGSRD 29284
17-03-18 02:12:08.943 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:08.943 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:08.943 -07 000000512 INF: FPGA: Recv ZSGSRD 29286
17-03-18 02:12:08.953 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:08.953 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:08.953 -07 000000444 INF: FPGA: Recv ZSGSRD 29289
17-03-18 02:12:08.963 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:08.963 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:08.963 -07 000000461 INF: FPGA: Recv ZSGSRD 29281
17-03-18 02:12:08.973 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:08.973 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:12:08.973 -07 000000606 INF: FPGA: Recv ZPIEZORD 24837
17-03-18 02:12:08.983 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:08.983 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.282 V. Piezo Error = -9.8 V.
17-03-18 02:12:08.983 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29286 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29286 (-127.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29281 (-127.7 uncal um), Max = 29292 (-127.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:12:08.983 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29286, posNoise = 6, negNoise = 5
17-03-18 02:12:08.983 -07 000000610 INF: Z Motor: After move to -0.128455, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:12:08.983 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-18 02:12:08.983 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:12:08.983 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:12:08.983 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:12:08.983 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:12:08.983 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:12:08.983 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:12:08.983 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:12:08.983 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:12:08.983 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:12:08.983 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:12:08.983 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:12:08.983 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:12:08.983 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:12:08.983 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:12:08.993 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:12:08.993 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:12:08.993 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:12:08.993 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:12:09.003 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:12:09.003 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:12:09.003 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28238 150\n [Camera]
17-03-18 02:12:09.203 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:12:09.593 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:12:09.593 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:12:09.593 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:12:09.593 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:12:09.593 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-18 02:12:09.593 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:12:09.593 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:12:09.593 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:12:09.593 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:12:09.603 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:12:09.793 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28238 779
17-03-18 02:12:09.933 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:12:09.973 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 02:12:09.973 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 02:12:09.973 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:12:09.973 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 02:12:09.973 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 02:12:09.973 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:12:09.983 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:12:09.983 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:12:09.983 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:12:09.983 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:12:10.123 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:12:10.123 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:12:10.123 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:12:10.233 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:12:10.233 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:12:10.243 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:12:10.243 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:12:10.243 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:12:10.243 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:12:10.243 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:12:10.313 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:12:10.323 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:12:10.323 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28238 150' command took 2 ms to send, 1310 ms to get response, and 1316 ms overall
17-03-18 02:12:10.323 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:12:10.323 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.128462828794746. ------
17-03-18 02:12:10.323 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:12:10.323 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13498 mm
17-03-18 02:12:10.323 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:12:10.323 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:12:10.323 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 02:12:10.323 -07 000000502 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-18 02:12:10.323 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 29487, sync = True, waitForSettling = False)
17-03-18 02:12:10.323 -07 000000430 INF: Z Motor: Moving to -0.134983 mm, started at -0.128463 mm, distance = -6.52 um
17-03-18 02:12:10.333 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:12:10.333 -07 000000430 INF: FPGA: Xmit ZDACW 29487\n [Z Motor]
17-03-18 02:12:10.333 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:12:10.343 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:12:10.343 -07 000000430 INF: FPGA: 'ZDACW 29487' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:12:10.343 -07 000000461 INF: FPGA: Recv YRDPOS 148173
17-03-18 02:12:10.353 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:12:10.353 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:12:10.353 -07 000000502 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:12:10.353 -07 000000502 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:12:10.353 -07 000000502 INF: Y Motor: Moving 1348 steps-27
17-03-18 02:12:10.363 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:12:10.363 -07 000000590 INF: FPGA: Recv ZDACR 29487
17-03-18 02:12:10.373 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:12:10.373 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:12:10.373 -07 000000430 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 02:12:10.553 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:12:10.553 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:12:10.643 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:12:10.643 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:12:10.643 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:12:10.643 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:12:10.643 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:12:10.643 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:12:10.653 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:12:10.653 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-18 02:12:10.653 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:12:10.653 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 02:12:10.743 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:12:10.743 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 389 ms overall
17-03-18 02:12:10.793 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:12:10.793 -07 000000579 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:12:10.803 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:12:10.803 -07 000000502 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:12:10.803 -07 000000502 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 02:12:10.803 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.843 mm, average velocity = 2.167 mm/sec
17-03-18 02:12:11.463 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:12:11.463 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:12:11.753 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:12:11.753 -07 000000424 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:12:11.763 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:11.763 -07 000000502 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:12:11.783 -07 000000502 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:12:11.783 -07 000000502 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:12:11.783 -07 000000502 INF: Y Motor: Moved to 73.1763 after 1460 ms (table move)
17-03-18 02:12:11.793 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134983 mm (DAC = 29487)
17-03-18 02:12:11.793 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:11.793 -07 000000561 INF: FPGA: Recv ZSGSRD 30303
17-03-18 02:12:11.803 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:12:11.803 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:11.803 -07 000000626 INF: FPGA: Recv ZSGSRD 30299
17-03-18 02:12:11.813 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:11.813 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:11.813 -07 000000591 INF: FPGA: Recv ZSGSRD 30304
17-03-18 02:12:11.823 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:11.823 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:11.823 -07 000000455 INF: FPGA: Recv ZSGSRD 30307
17-03-18 02:12:11.833 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:11.833 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:11.833 -07 000000430 INF: FPGA: Recv ZSGSRD 30306
17-03-18 02:12:11.843 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:11.843 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:11.843 -07 000000626 INF: FPGA: Recv ZSGSRD 30304
17-03-18 02:12:11.853 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:11.853 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:11.853 -07 000000502 INF: FPGA: Recv ZSGSRD 30300
17-03-18 02:12:11.863 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:11.863 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:11.863 -07 000000629 INF: FPGA: Recv ZSGSRD 30298
17-03-18 02:12:11.873 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:11.873 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:11.873 -07 000000430 INF: FPGA: Recv ZSGSRD 30298
17-03-18 02:12:11.883 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:11.883 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:11.883 -07 000000626 INF: FPGA: Recv ZSGSRD 30298
17-03-18 02:12:11.893 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:11.893 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:12:11.893 -07 000000462 INF: FPGA: Recv ZPIEZORD 26186
17-03-18 02:12:11.903 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:11.903 -07 000000569 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.499 V. Piezo Error = -9.1 V.
17-03-18 02:12:11.903 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30302 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30302 (-134.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30298 (-134.2 uncal um), Max = 30307 (-134.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:12:11.903 -07 000000569 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30302, posNoise = 5, negNoise = 4
17-03-18 02:12:11.903 -07 000000569 INF: Z Motor: After move to -0.134983, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:12:11.903 -07 000000569 INF: Z Motor: Settle wait time = 1463 ms, measure time = 109 ms (allowed 150 ms), total time = 1572 ms
17-03-18 02:12:11.903 -07 000000569 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:12:11.953 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 02:12:11.953 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:12:11.953 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:12:11.953 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:12:11.953 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:12:11.953 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:12:11.953 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:12:11.953 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:12:11.953 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:12:11.953 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:12:11.963 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:12:11.963 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:12:11.963 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:12:11.963 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:12:11.973 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:12:12.013 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:12:12.313 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:12:12.313 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:12:12.313 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:12:12.313 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:12:12.353 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:12:12.353 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 02:12:12.353 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:12:12.433 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:12:12.433 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:12:12.433 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:12:12.433 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:12:12.453 -07 000000467 INF: Autofocus start
17-03-18 02:12:12.453 -07 000000467 INF: MeasureProfile start
17-03-18 02:12:12.453 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:12:12.453 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:12:12.463 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:12:12.463 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:12:12.463 -07 000000467 INF: MeasureProfile done
17-03-18 02:12:12.463 -07 000000467 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:12:12.463 -07 000000467 INF: Autofocus finished
17-03-18 02:12:12.663 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:12:12.663 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:12:12.663 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.134989828330776. ----------
17-03-18 02:12:12.673 -07 000000610 INF: Cycle	96	Tile	17	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:12:12.673 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28011, sync = True, waitForSettling = True)
17-03-18 02:12:12.673 -07 000000610 INF: Z Motor: Moving to -0.128226 mm, started at -0.134990 mm, distance = 6.76 um
17-03-18 02:12:12.673 -07 000000610 INF: FPGA: Xmit ZDACW 28011\n [Z Motor]
17-03-18 02:12:12.673 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:12:12.683 -07 000000610 INF: FPGA: 'ZDACW 28011' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:12:12.683 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:12:12.683 -07 000000606 INF: FPGA: Recv ZDACR 28011
17-03-18 02:12:12.693 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:12.693 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:12:12.843 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:12.843 -07 000000629 INF: FPGA: Recv ZSGSRD 29247
17-03-18 02:12:12.853 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:12:12.853 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:12.853 -07 000000579 INF: FPGA: Recv ZSGSRD 29247
17-03-18 02:12:12.863 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:12.863 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:12.863 -07 000000461 INF: FPGA: Recv ZSGSRD 29250
17-03-18 02:12:12.873 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:12.873 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:12.873 -07 000000590 INF: FPGA: Recv ZSGSRD 29253
17-03-18 02:12:12.883 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:12.883 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:12.883 -07 000000576 INF: FPGA: Recv ZSGSRD 29249
17-03-18 02:12:12.893 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:12.893 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:12.893 -07 000000629 INF: FPGA: Recv ZSGSRD 29252
17-03-18 02:12:12.903 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:12.903 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:12.903 -07 000000579 INF: FPGA: Recv ZSGSRD 29249
17-03-18 02:12:12.913 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:12.913 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:12.913 -07 000000591 INF: FPGA: Recv ZSGSRD 29248
17-03-18 02:12:12.923 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:12.923 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:12.923 -07 000000590 INF: FPGA: Recv ZSGSRD 29254
17-03-18 02:12:12.933 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:12.933 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:12.933 -07 000000444 INF: FPGA: Recv ZSGSRD 29252
17-03-18 02:12:12.943 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:12.943 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:12:12.943 -07 000000502 INF: FPGA: Recv ZPIEZORD 24804
17-03-18 02:12:12.953 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:12.953 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.274 V. Piezo Error = -9.8 V.
17-03-18 02:12:12.953 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29250 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29250 (-127.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29247 (-127.4 uncal um), Max = 29254 (-127.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:12:12.953 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29250, posNoise = 4, negNoise = 3
17-03-18 02:12:12.953 -07 000000610 INF: Z Motor: After move to -0.128226, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:12:12.953 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:12:12.953 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:12:12.953 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:12:12.953 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:12:12.953 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:12:12.953 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:12:12.953 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:12:12.953 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:12:12.953 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:12:12.953 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:12:12.953 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:12:12.953 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:12:12.953 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:12:12.963 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:12:12.963 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:12:12.963 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:12:12.963 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:12:12.983 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:12:12.983 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 02:12:12.983 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:12:12.983 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-18 02:12:12.983 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28188 150\n [Camera]
17-03-18 02:12:13.183 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 02:12:13.573 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:12:13.573 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:12:13.573 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:12:13.573 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:12:13.573 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-18 02:12:13.583 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:12:13.583 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:12:13.583 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:12:13.583 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:12:13.583 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:12:13.763 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28188 778
17-03-18 02:12:13.783 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 4.012614,
17-03-18 02:12:13.913 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:12:13.973 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 02:12:13.973 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:12:13.973 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:12:13.973 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 02:12:13.973 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:12:13.973 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:12:13.973 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:12:13.973 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:12:13.973 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:12:13.983 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 02:12:14.103 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:12:14.103 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:12:14.113 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:12:14.113 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:12:14.113 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:12:14.113 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:12:14.113 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:12:14.113 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:12:14.113 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:12:14.113 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:12:14.303 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:12:14.303 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:12:14.303 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28188 150' command took 2 ms to send, 1311 ms to get response, and 1318 ms overall
17-03-18 02:12:14.303 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:12:14.303 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128231557157643. ------
17-03-18 02:12:14.303 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:12:14.303 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13460 mm
17-03-18 02:12:14.303 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:12:14.313 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:12:14.313 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:12:14.313 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 29402, sync = True, waitForSettling = False)
17-03-18 02:12:14.313 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:12:14.313 -07 000000444 INF: Z Motor: Moving to -0.134594 mm, started at -0.128232 mm, distance = -6.36 um
17-03-18 02:12:14.313 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 02:12:14.313 -07 000000561 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 02:12:14.323 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:12:14.323 -07 000000590 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:12:14.333 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:12:14.333 -07 000000561 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:12:14.333 -07 000000561 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:12:14.333 -07 000000561 INF: Y Motor: Moving 1354 steps-33
17-03-18 02:12:14.333 -07 000000444 INF: FPGA: Xmit ZDACW 29402\n [Z Motor]
17-03-18 02:12:14.333 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:12:14.343 -07 000000444 INF: FPGA: 'ZDACW 29402' command took 1 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:12:14.343 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:12:14.343 -07 000000606 INF: FPGA: Recv ZDACR 29402
17-03-18 02:12:14.353 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:12:14.353 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:14.353 -07 000000444 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 02:12:14.513 -07 000000430 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:12:14.513 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 02:12:14.513 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:12:14.513 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:12:14.513 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:12:14.523 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:12:14.523 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:12:14.523 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:12:14.523 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:12:14.523 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 02:12:14.523 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:12:14.533 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 02:12:14.733 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 02:12:14.733 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 5 ms to send, 373 ms to get response, and 402 ms overall
17-03-18 02:12:14.763 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:12:14.773 -07 000000444 INF: FPGA: Recv YRDPOS 151569
17-03-18 02:12:14.773 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 02:12:14.773 -07 000000561 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:12:14.773 -07 000000561 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:12:14.773 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 402 ms, distance = 0.846 mm, average velocity = 2.105 mm/sec
17-03-18 02:12:15.723 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:12:15.723 -07 000000467 INF: FPGA: Recv YRDPOS 151569
17-03-18 02:12:15.733 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:15.733 -07 000000561 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:12:15.753 -07 000000561 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:12:15.753 -07 000000561 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:12:15.753 -07 000000561 INF: Y Motor: Moved to 74.0083 after 1437 ms (table move)
17-03-18 02:12:15.753 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134594 mm (DAC = 29402)
17-03-18 02:12:15.753 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:15.753 -07 000000461 INF: FPGA: Recv ZSGSRD 30240
17-03-18 02:12:15.763 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:12:15.763 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:15.763 -07 000000467 INF: FPGA: Recv ZSGSRD 30235
17-03-18 02:12:15.773 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:15.773 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:15.773 -07 000000424 INF: FPGA: Recv ZSGSRD 30243
17-03-18 02:12:15.783 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:15.783 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:15.783 -07 000000579 INF: FPGA: Recv ZSGSRD 30232
17-03-18 02:12:15.793 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:15.793 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:15.793 -07 000000444 INF: FPGA: Recv ZSGSRD 30245
17-03-18 02:12:15.803 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:15.803 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:15.803 -07 000000576 INF: FPGA: Recv ZSGSRD 30244
17-03-18 02:12:15.813 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:15.813 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:15.813 -07 000000579 INF: FPGA: Recv ZSGSRD 30236
17-03-18 02:12:15.823 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:15.823 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:15.823 -07 000000629 INF: FPGA: Recv ZSGSRD 30243
17-03-18 02:12:15.833 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:15.833 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:15.833 -07 000000591 INF: FPGA: Recv ZSGSRD 30236
17-03-18 02:12:15.843 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:15.843 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:15.843 -07 000000467 INF: FPGA: Recv ZSGSRD 30242
17-03-18 02:12:15.853 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:15.853 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:12:15.853 -07 000000502 INF: FPGA: Recv ZPIEZORD 26093
17-03-18 02:12:15.863 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:15.863 -07 000000626 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.486 V. Piezo Error = -9.1 V.
17-03-18 02:12:15.863 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.6 um, Read 10 ADC samples: Avg = 30240 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30241 (-133.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30232 (-133.8 uncal um), Max = 30245 (-133.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:12:15.863 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30240, posNoise = 5, negNoise = 8
17-03-18 02:12:15.863 -07 000000626 INF: Z Motor: After move to -0.134594, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:12:15.863 -07 000000626 INF: Z Motor: Settle wait time = 1442 ms, measure time = 106 ms (allowed 150 ms), total time = 1548 ms
17-03-18 02:12:15.863 -07 000000626 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:12:15.913 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-18 02:12:15.913 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:12:15.913 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:12:15.913 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:12:15.913 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:12:15.913 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:12:15.913 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:12:15.913 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:12:15.913 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:12:15.913 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:12:15.923 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:12:15.923 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:12:15.933 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 02:12:15.933 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:12:15.933 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:12:15.983 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:12:16.273 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:12:16.273 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:12:16.283 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:12:16.283 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:12:16.313 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:12:16.313 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 02:12:16.313 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 02:12:16.393 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 02:12:16.393 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:12:16.403 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:12:16.403 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:12:16.413 -07 000000430 INF: Autofocus start
17-03-18 02:12:16.413 -07 000000430 INF: MeasureProfile start
17-03-18 02:12:16.413 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:12:16.413 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:12:16.423 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:12:16.423 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:12:16.423 -07 000000430 INF: MeasureProfile done
17-03-18 02:12:16.423 -07 000000430 INF: X=-7  Z correction [um]=-0.03747771
17-03-18 02:12:16.423 -07 000000430 INF: Autofocus finished
17-03-18 02:12:16.463 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:12:16.463 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:12:16.623 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:12:16.623 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:12:16.623 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.134591527177986. ----------
17-03-18 02:12:16.623 -07 000000610 INF: Cycle	96	Tile	18	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:12:16.633 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27907, sync = True, waitForSettling = True)
17-03-18 02:12:16.633 -07 000000610 INF: Z Motor: Moving to -0.127750 mm, started at -0.134592 mm, distance = 6.84 um
17-03-18 02:12:16.633 -07 000000610 INF: FPGA: Xmit ZDACW 27907\n [Z Motor]
17-03-18 02:12:16.633 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:12:16.643 -07 000000610 INF: FPGA: 'ZDACW 27907' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:12:16.643 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:12:16.643 -07 000000462 INF: FPGA: Recv ZDACR 27907
17-03-18 02:12:16.653 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:16.653 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:12:16.803 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:16.803 -07 000000606 INF: FPGA: Recv ZSGSRD 29174
17-03-18 02:12:16.813 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:12:16.813 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:16.813 -07 000000626 INF: FPGA: Recv ZSGSRD 29176
17-03-18 02:12:16.823 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:16.823 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:16.823 -07 000000444 INF: FPGA: Recv ZSGSRD 29177
17-03-18 02:12:16.833 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:16.833 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:16.833 -07 000000467 INF: FPGA: Recv ZSGSRD 29173
17-03-18 02:12:16.843 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:16.843 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:16.843 -07 000000569 INF: FPGA: Recv ZSGSRD 29179
17-03-18 02:12:16.853 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:16.853 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:16.853 -07 000000579 INF: FPGA: Recv ZSGSRD 29173
17-03-18 02:12:16.863 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:16.863 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:16.863 -07 000000626 INF: FPGA: Recv ZSGSRD 29181
17-03-18 02:12:16.873 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:16.873 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:16.873 -07 000000455 INF: FPGA: Recv ZSGSRD 29180
17-03-18 02:12:16.883 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:16.883 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:16.883 -07 000000467 INF: FPGA: Recv ZSGSRD 29172
17-03-18 02:12:16.893 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:16.893 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:16.893 -07 000000590 INF: FPGA: Recv ZSGSRD 29175
17-03-18 02:12:16.903 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:16.903 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:12:16.903 -07 000000502 INF: FPGA: Recv ZPIEZORD 24686
17-03-18 02:12:16.913 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:16.913 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.258 V. Piezo Error = -9.8 V.
17-03-18 02:12:16.913 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.8 um, Read 10 ADC samples: Avg = 29176 (-127.0 uncal um), Error = 0.8 uncal um, Median = 29176 (-127.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29172 (-127.0 uncal um), Max = 29181 (-127.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:12:16.913 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29176, posNoise = 5, negNoise = 4
17-03-18 02:12:16.913 -07 000000610 INF: Z Motor: After move to -0.127750, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:12:16.913 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:12:16.913 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:12:16.913 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:12:16.913 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:12:16.913 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:12:16.913 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:12:16.913 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:12:16.913 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:12:16.913 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:12:16.913 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:12:16.913 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:12:16.913 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:12:16.913 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:12:16.923 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:12:16.923 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:12:16.923 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:12:16.923 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:12:16.933 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:12:16.933 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:12:16.933 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:12:16.933 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:12:16.933 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28083 150\n [Camera]
17-03-18 02:12:17.132 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:12:17.522 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:12:17.522 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:12:17.522 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:12:17.522 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:12:17.522 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-18 02:12:17.522 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:12:17.522 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:12:17.532 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:12:17.532 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:12:17.532 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:12:17.712 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28083 778
17-03-18 02:12:17.862 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:12:17.902 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 02:12:17.902 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 02:12:17.902 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:12:17.902 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:12:17.902 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:12:17.902 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:12:17.902 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:12:17.902 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:12:17.902 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:12:17.912 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 02:12:18.052 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:12:18.052 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:12:18.052 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:12:18.172 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:12:18.172 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:12:18.172 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:12:18.182 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:12:18.182 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:12:18.182 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:12:18.182 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:12:18.242 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:12:18.252 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:12:18.252 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28083 150' command took 2 ms to send, 1310 ms to get response, and 1317 ms overall
17-03-18 02:12:18.252 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:12:18.252 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.127756165459153. ------
17-03-18 02:12:18.252 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:12:18.252 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13354 mm
17-03-18 02:12:18.252 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:12:18.252 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 02:12:18.252 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 29173, sync = True, waitForSettling = False)
17-03-18 02:12:18.252 -07 000000629 INF: Z Motor: Moving to -0.133545 mm, started at -0.127756 mm, distance = -5.79 um
17-03-18 02:12:18.252 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:12:18.252 -07 000000590 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 02:12:18.262 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:12:18.262 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:12:18.262 -07 000000461 INF: FPGA: Recv YRDPOS 151570
17-03-18 02:12:18.272 -07 000000629 INF: FPGA: Xmit ZDACW 29173\n [Z Motor]
17-03-18 02:12:18.272 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:12:18.272 -07 000000590 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:12:18.272 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:12:18.272 -07 000000590 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:12:18.272 -07 000000590 INF: Y Motor: Moving 1350 steps-29
17-03-18 02:12:18.282 -07 000000430 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:12:18.282 -07 000000629 INF: FPGA: 'ZDACW 29173' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:12:18.292 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:12:18.302 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:12:18.302 -07 000000561 INF: FPGA: Recv ZDACR 29173
17-03-18 02:12:18.312 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:12:18.312 -07 000000629 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 02:12:18.482 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:12:18.482 -07 000000430 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 225 ms overall
17-03-18 02:12:18.572 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 02:12:18.572 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:12:18.572 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:12:18.572 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:12:18.572 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:12:18.572 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:12:18.572 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:12:18.582 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:12:18.582 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-18 02:12:18.582 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:12:18.662 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 02:12:18.662 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-18 02:12:18.712 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:12:18.712 -07 000000626 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:12:18.722 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:12:18.722 -07 000000590 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:12:18.722 -07 000000590 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-18 02:12:18.722 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.159 mm/sec
17-03-18 02:12:19.142 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 4.02213,
17-03-18 02:12:19.672 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:12:19.672 -07 000000561 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:12:19.682 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:12:19.682 -07 000000590 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:12:19.692 -07 000000590 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:12:19.692 -07 000000590 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:12:19.692 -07 000000590 INF: Y Motor: Moved to 74.8320 after 1440 ms (table move)
17-03-18 02:12:19.702 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133545 mm (DAC = 29173)
17-03-18 02:12:19.702 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:19.702 -07 000000462 INF: FPGA: Recv ZSGSRD 30091
17-03-18 02:12:19.712 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:12:19.712 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:19.712 -07 000000561 INF: FPGA: Recv ZSGSRD 30072
17-03-18 02:12:19.722 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:19.722 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:19.722 -07 000000512 INF: FPGA: Recv ZSGSRD 30072
17-03-18 02:12:19.732 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:19.732 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:19.732 -07 000000444 INF: FPGA: Recv ZSGSRD 30085
17-03-18 02:12:19.742 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:19.742 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:19.742 -07 000000424 INF: FPGA: Recv ZSGSRD 30079
17-03-18 02:12:19.752 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:19.752 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:19.752 -07 000000461 INF: FPGA: Recv ZSGSRD 30083
17-03-18 02:12:19.762 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:19.762 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:19.762 -07 000000606 INF: FPGA: Recv ZSGSRD 30081
17-03-18 02:12:19.772 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:19.772 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:19.772 -07 000000606 INF: FPGA: Recv ZSGSRD 30084
17-03-18 02:12:19.782 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:12:19.782 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:19.782 -07 000000444 INF: FPGA: Recv ZSGSRD 30077
17-03-18 02:12:19.792 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:19.792 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:19.792 -07 000000461 INF: FPGA: Recv ZSGSRD 30071
17-03-18 02:12:19.802 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:19.802 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:12:19.802 -07 000000462 INF: FPGA: Recv ZPIEZORD 25891
17-03-18 02:12:19.812 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:19.812 -07 000000455 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.452 V. Piezo Error = -9.2 V.
17-03-18 02:12:19.812 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.5 um, Read 10 ADC samples: Avg = 30080 (-132.8 uncal um), Error = 0.8 uncal um, Median = 30080 (-132.8 uncal um), StdDev = 7 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30071 (-132.7 uncal um), Max = 30091 (-132.8 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:12:19.812 -07 000000455 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30080, posNoise = 11, negNoise = 9
17-03-18 02:12:19.812 -07 000000455 INF: Z Motor: After move to -0.133545, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:12:19.812 -07 000000455 INF: Z Motor: Settle wait time = 1443 ms, measure time = 109 ms (allowed 150 ms), total time = 1552 ms
17-03-18 02:12:19.812 -07 000000455 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:12:19.862 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-18 02:12:19.862 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:12:19.862 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:12:19.862 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:12:19.872 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:12:19.872 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:12:19.872 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:12:19.872 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:12:19.882 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 5 ms.
17-03-18 02:12:19.882 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:12:19.882 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 02:12:19.882 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:12:19.892 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 02:12:19.892 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 21 ms.
17-03-18 02:12:19.902 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:12:19.942 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:12:20.242 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:12:20.242 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:12:20.242 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:12:20.252 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:12:20.292 -07 000000444 INF: FPGA: Recv @CAMSNAP 383
17-03-18 02:12:20.292 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 02:12:20.292 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 388 ms overall
17-03-18 02:12:20.362 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:12:20.362 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:12:20.362 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:12:20.362 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:12:20.392 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:12:20.392 -07 000000512 INF: Autofocus start
17-03-18 02:12:20.392 -07 000000512 INF: MeasureProfile start
17-03-18 02:12:20.392 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:12:20.402 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:12:20.402 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:12:20.402 -07 000000512 INF: MeasureProfile done
17-03-18 02:12:20.402 -07 000000512 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:12:20.402 -07 000000512 INF: Autofocus finished
17-03-18 02:12:20.602 -07 000000430 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:12:20.602 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:12:20.602 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.133563653235305. ----------
17-03-18 02:12:20.602 -07 000000610 INF: Cycle	96	Tile	19	Exposure Settings		A	393	G	189	T	189	C	393
17-03-18 02:12:20.612 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27697, sync = True, waitForSettling = True)
17-03-18 02:12:20.612 -07 000000610 INF: Z Motor: Moving to -0.126789 mm, started at -0.133564 mm, distance = 6.77 um
17-03-18 02:12:20.612 -07 000000610 INF: FPGA: Xmit ZDACW 27697\n [Z Motor]
17-03-18 02:12:20.612 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:12:20.622 -07 000000610 INF: FPGA: 'ZDACW 27697' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:12:20.622 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:12:20.622 -07 000000629 INF: FPGA: Recv ZDACR 27697
17-03-18 02:12:20.632 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:20.632 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:12:20.782 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:20.782 -07 000000430 INF: FPGA: Recv ZSGSRD 29030
17-03-18 02:12:20.792 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:12:20.792 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:20.792 -07 000000569 INF: FPGA: Recv ZSGSRD 29022
17-03-18 02:12:20.802 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:20.802 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:20.802 -07 000000462 INF: FPGA: Recv ZSGSRD 29022
17-03-18 02:12:20.812 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:20.812 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:20.812 -07 000000591 INF: FPGA: Recv ZSGSRD 29027
17-03-18 02:12:20.822 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:20.822 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:20.822 -07 000000444 INF: FPGA: Recv ZSGSRD 29027
17-03-18 02:12:20.832 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:20.832 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:20.832 -07 000000467 INF: FPGA: Recv ZSGSRD 29028
17-03-18 02:12:20.842 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:20.842 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:20.842 -07 000000569 INF: FPGA: Recv ZSGSRD 29023
17-03-18 02:12:20.852 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:20.852 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:20.852 -07 000000606 INF: FPGA: Recv ZSGSRD 29026
17-03-18 02:12:20.862 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:20.862 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:20.862 -07 000000502 INF: FPGA: Recv ZSGSRD 29028
17-03-18 02:12:20.872 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:20.872 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:12:20.872 -07 000000444 INF: FPGA: Recv ZSGSRD 29026
17-03-18 02:12:20.882 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:20.882 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:12:20.882 -07 000000467 INF: FPGA: Recv ZPIEZORD 24517
17-03-18 02:12:20.892 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:20.892 -07 000000610 INF: Z Motor: Piezo is near 32.4 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.226 V. Piezo Error = -9.9 V.
17-03-18 02:12:20.892 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.8 um, Read 10 ADC samples: Avg = 29026 (-126.0 uncal um), Error = 0.8 uncal um, Median = 29026 (-126.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29022 (-126.0 uncal um), Max = 29030 (-126.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:12:20.892 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29026, posNoise = 4, negNoise = 4
17-03-18 02:12:20.892 -07 000000610 INF: Z Motor: After move to -0.126789, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:12:20.892 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:12:20.892 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:12:20.892 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:12:20.892 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:12:20.892 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:12:20.892 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:12:20.892 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:12:20.892 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:12:20.892 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:12:20.892 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:12:20.892 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:12:20.892 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:12:20.892 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:12:20.902 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:12:20.902 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:12:20.902 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:12:20.902 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:12:20.912 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 02:12:20.912 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:12:20.912 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 02:12:20.912 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:12:20.912 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 27873 150\n [Camera]
17-03-18 02:12:21.112 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:12:21.462 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:12:21.462 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 95. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:12:21.512 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-18 02:12:21.512 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-18 02:12:21.512 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:12:21.512 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:12:21.512 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-18 02:12:21.512 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-18 02:12:21.512 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-18 02:12:21.512 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:12:21.512 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:12:21.512 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:12:21.702 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27873 778
17-03-18 02:12:21.852 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-18 02:12:21.902 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 02:12:21.902 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:12:21.902 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:12:21.902 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 02:12:21.902 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:12:21.902 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:12:21.902 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:12:21.902 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:12:21.902 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:12:21.912 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:12:22.042 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-18 02:12:22.042 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-18 02:12:22.042 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:12:22.042 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-18 02:12:22.042 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-18 02:12:22.042 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:12:22.052 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:12:22.052 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:12:22.052 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:12:22.052 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:12:22.232 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-18 02:12:22.232 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:12:22.232 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 27873 150' command took 2 ms to send, 1314 ms to get response, and 1317 ms overall
17-03-18 02:12:22.452 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 02:12:22.452 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:12:22.452 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:12:22.452 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:12:22.452 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:12:22.452 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:12:22.452 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:12:22.452 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 02:12:22.452 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 02:12:22.452 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:12:22.462 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-18 02:12:22.502 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 02:12:22.502 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 02:12:22.542 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 43 ms.
17-03-18 02:12:22.552 -07 000000610 INF: Enabling Skipping AutoFocus in the next 1 cycles.
17-03-18 02:12:22.552 -07 000000610 INF: Imaging Cycle 96: ScanTilesCommand Cycle 96 time end. Duration was 160936 ms.
17-03-18 02:12:22.552 -07 000000610 INF: =================== Cycle #96 ===================
17-03-18 02:12:22.552 -07 000000610 INF: ===================  ===================
17-03-18 02:12:22.552 -07 000000590 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 02:12:22.562 -07 000000467 INF: FPGA: Recv EXLED1ADCR 21
17-03-18 02:12:22.562 -07 000000590 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:12:22.562 -07 000000590 INF: GreenLED: Using Green data: Photodiode ADC 21 --> 0.0 mW (old method), or 1.5 mW (new method). Difference = 1.5 mW
17-03-18 02:12:22.562 -07 000000590 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 96, FrontChillerTemperature: 4.02213, FrontChillerHeatSinkTemperature: 0.400962, AmbientTemperature: 18.74788, FlowCellCompartmentTemperature: 22.00417, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.51096, GreenLEDSensorTemperature: 27.21573, PhotodiodePowerAdcGreen: 21, PhotodiodePowerMwGreen: 1.471122
17-03-18 02:12:22.632 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.