17-03-18 02:12:22.682 -07 000000610 INF: =================== Cycle #97 ===================
17-03-18 02:12:22.692 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 02:12:22.692 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-18 02:12:22.692 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:12:22.692 -07 000000629 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:12:22.702 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:12:22.702 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:12:22.702 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 02:12:22.702 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 02:12:22.702 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 02:12:22.812 -07 000000561 INF: FPGA: Recv YMVTO 154377 870
17-03-18 02:12:22.812 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 116 ms overall
17-03-18 02:12:22.812 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-18 02:12:22.812 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 870 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-18 02:12:22.812 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.549 mm, average velocity = 4.729 mm/sec
17-03-18 02:12:24.502 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 4.009895,
17-03-18 02:12:25.812 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:12:25.812 -07 000000502 INF: FPGA: Recv YRDPOS 154378
17-03-18 02:12:25.822 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:12:25.822 -07 000000610 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:12:25.842 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:12:25.842 -07 000000610 INF: Y Motor: Position error after settling = -1 encoder counts (0.000 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:12:25.842 -07 000000610 INF: Y Motor: Moved to 75.3799 after 3156 ms
17-03-18 02:12:25.852 -07 000000610 INF: =================== Cycle #97, Flow Cell Temp 60° ===================
17-03-18 02:12:25.852 -07 000000610 INF: =================== Cycle #97, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 02:12:25.852 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 02:12:25.852 -07 000000455 INF: FPGA: Recv TEC2TEMP 
17-03-18 02:12:25.862 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:12:25.862 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:12:25.862 -07 000000444 INF: FPGA: Recv TEC2EN 
17-03-18 02:12:25.872 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:12:25.872 -07 000000610 INF: =================== Cycle #97, Flow Cell Temp 60° ===================
17-03-18 02:12:25.872 -07 000000610 INF: =================== Cycle #97 ===================
17-03-18 02:12:25.872 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:12:25.872 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:12:25.902 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 02:12:25.902 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 02:12:25.902 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:12:26.202 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:12:26.222 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 02:12:26.222 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 02:12:26.272 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:12:26.292 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:12:26.292 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:12:26.392 -07 000000610 INF: =================== Cycle #97, Pumping Reagent PR2 (3) ===================
17-03-18 02:12:26.392 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 02:12:26.392 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:12:26.422 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:12:26.422 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:12:26.422 -07 000000610 INF: =================== Cycle #97, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:12:26.462 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:12:26.462 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1463, R2=1521, Total=2984. Warn if over 250 bubbles per interval.
17-03-18 02:12:26.552 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 02:12:26.592 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:12:29.722 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:12:29.752 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:12:29.862 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 3.975845,
17-03-18 02:12:30.172 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:12:30.202 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:12:30.622 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:12:30.652 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:12:30.652 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 02:12:30.652 -07 000000610 INF: =================== Cycle #97, Pumping Reagent PR2 (3) ===================
17-03-18 02:12:30.782 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:12:30.812 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:12:30.812 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:12:30.942 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:12:30.982 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:12:30.982 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:12:30.982 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:12:31.112 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:12:31.142 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:12:31.462 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 4
17-03-18 02:12:31.462 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=4, R2=3, Total=7. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1467, R2=1524, Total=2991. Warn if over 250 bubbles per interval.
17-03-18 02:12:31.572 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:12:31.602 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:12:31.602 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:12:31.602 -07 000000610 INF: =================== Cycle #97 ===================
17-03-18 02:12:32.812 -07 000000610 INF: AsyncDelayTimer waited 1209ms
17-03-18 02:12:32.812 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 02:12:32.812 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:12:32.832 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:12:32.832 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 02:12:32.832 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 02:12:32.972 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:12:32.992 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 02:12:32.992 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 02:12:33.042 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:12:33.062 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 02:12:33.062 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:12:33.162 -07 000000610 INF: =================== Cycle #97, Pumping Reagent CMS (4) ===================
17-03-18 02:12:33.162 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:12:33.162 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:12:33.192 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:12:33.192 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:12:33.192 -07 000000610 INF: =================== Cycle #97, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 02:12:33.322 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:12:33.362 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:12:34.802 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:12:34.832 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:12:35.222 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 3.971733,
17-03-18 02:12:35.252 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:12:35.282 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:12:35.282 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 02:12:35.282 -07 000000610 INF: =================== Cycle #97, Pumping Reagent CMS (4) ===================
17-03-18 02:12:35.412 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:12:35.442 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:12:35.442 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:12:35.572 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:12:35.602 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:12:35.602 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:12:35.602 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:12:35.732 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:12:35.762 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:12:36.192 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:12:36.222 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:12:36.222 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:12:36.222 -07 000000610 INF: =================== Cycle #97 ===================
17-03-18 02:12:36.462 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 02:12:36.462 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1467, R2=1525, Total=2992. Warn if over 250 bubbles per interval.
17-03-18 02:12:37.442 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:12:37.442 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:12:37.442 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:12:37.462 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 02:12:37.462 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 02:12:37.462 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 02:12:37.612 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:12:37.632 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 02:12:37.632 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 02:12:37.682 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:12:37.702 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:12:37.702 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:12:37.802 -07 000000610 INF: =================== Cycle #97, Pumping Reagent PR2 (3) ===================
17-03-18 02:12:37.802 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:12:37.802 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:12:37.832 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:12:37.832 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:12:37.832 -07 000000610 INF: =================== Cycle #97, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:12:37.962 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:12:38.002 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:12:38.872 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:12:38.902 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:12:38.902 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 02:12:38.902 -07 000000610 INF: =================== Cycle #97, Pumping Reagent PR2 (3) ===================
17-03-18 02:12:39.032 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:12:39.062 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:12:39.062 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:12:39.192 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:12:39.222 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:12:39.222 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:12:39.222 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:12:39.352 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:12:39.382 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:12:39.812 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:12:39.842 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:12:39.842 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:12:39.842 -07 000000610 INF: =================== Cycle #97 ===================
17-03-18 02:12:39.842 -07 000000444 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:12:39.842 -07 000000424 INF: WaitCommand(10000) start
17-03-18 02:12:39.842 -07 000000444 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:12:40.582 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 3.977204,
17-03-18 02:12:41.062 -07 000000444 INF: AsyncDelayTimer waited 1215ms
17-03-18 02:12:41.062 -07 000000444 INF: LanePump: Xmit /1?\r
17-03-18 02:12:41.092 -07 000000444 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:12:41.092 -07 000000444 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:12:41.222 -07 000000444 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:12:41.262 -07 000000444 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:12:41.462 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:12:41.462 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1467, R2=1525, Total=2992. Warn if over 250 bubbles per interval.
17-03-18 02:12:42.792 -07 000000444 INF: LanePump: Xmit /1Q\r
17-03-18 02:12:42.822 -07 000000444 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:12:43.242 -07 000000444 INF: LanePump: Xmit /1Q\r
17-03-18 02:12:43.272 -07 000000444 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:12:43.272 -07 000000444 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 02:12:43.272 -07 000000444 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:12:43.272 -07 000000444 INF: ===================  ===================
17-03-18 02:12:45.942 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 3.981281,
17-03-18 02:12:46.462 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:12:46.462 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1467, R2=1525, Total=2992. Warn if over 250 bubbles per interval.
17-03-18 02:12:49.852 -07 000000424 INF: WaitCommand(10000) end
17-03-18 02:12:49.852 -07 000000610 INF: =================== Cycle #97, Pumping Reagent PR2 (3) ===================
17-03-18 02:12:49.852 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 02:12:49.852 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:12:49.882 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:12:49.882 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:12:49.882 -07 000000610 INF: =================== Cycle #97, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:12:50.012 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 02:12:50.052 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:12:51.301 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 4.001704,
17-03-18 02:12:51.461 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:12:51.471 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1467, R2=1525, Total=2992. Warn if over 250 bubbles per interval.
17-03-18 02:12:56.181 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:12:56.211 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:12:56.461 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 02:12:56.461 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:12:56.631 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:12:56.661 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:12:56.661 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 3.999021,
17-03-18 02:12:57.081 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:12:57.111 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:12:57.531 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:12:57.561 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:12:57.981 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:12:58.011 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:12:58.011 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 02:12:58.011 -07 000000610 INF: =================== Cycle #97, Pumping Reagent PR2 (3) ===================
17-03-18 02:12:58.141 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:12:58.171 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:12:58.171 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:12:58.301 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:12:58.331 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:12:58.331 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:12:58.331 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:12:58.461 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:12:58.491 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:12:58.921 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:12:58.951 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:12:58.951 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:12:58.951 -07 000000610 INF: =================== Cycle #97 ===================
17-03-18 02:13:00.171 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:13:00.171 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 02:13:00.171 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:13:00.191 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:13:00.191 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 02:13:00.191 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 02:13:00.401 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:13:00.421 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 02:13:00.421 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 02:13:00.471 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:13:00.491 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 02:13:00.491 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:13:00.591 -07 000000610 INF: =================== Cycle #97, Pumping Reagent IMT (1) ===================
17-03-18 02:13:00.591 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:13:00.591 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:13:00.621 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:13:00.621 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:13:00.621 -07 000000610 INF: =================== Cycle #97, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 02:13:00.751 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:13:00.791 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:13:01.461 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:13:01.461 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:13:02.021 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 3.983999,
17-03-18 02:13:02.231 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:13:02.261 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:13:02.681 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:13:02.711 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:13:02.711 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 02:13:02.711 -07 000000610 INF: =================== Cycle #97, Pumping Reagent IMT (1) ===================
17-03-18 02:13:02.841 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:13:02.871 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:13:02.871 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:13:03.001 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:13:03.031 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:13:03.031 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:13:03.031 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:13:03.161 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:13:03.191 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:13:03.621 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:13:03.651 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:13:03.651 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:13:03.651 -07 000000610 INF: =================== Cycle #97 ===================
17-03-18 02:13:04.871 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 02:13:04.871 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:13:04.871 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:13:04.891 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 02:13:04.891 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 02:13:04.891 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:13:05.121 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:13:05.141 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 02:13:05.141 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 02:13:05.191 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:13:05.211 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:13:05.211 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:13:05.311 -07 000000610 INF: =================== Cycle #97, Pumping Reagent PR2 (3) ===================
17-03-18 02:13:05.311 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:13:05.311 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:13:05.341 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:13:05.341 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:13:05.341 -07 000000610 INF: =================== Cycle #97, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:13:05.471 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:13:05.511 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:13:06.381 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:13:06.411 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:13:06.411 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-18 02:13:06.411 -07 000000610 INF: =================== Cycle #97, Pumping Reagent PR2 (3) ===================
17-03-18 02:13:06.461 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:13:06.461 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:13:06.541 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:13:06.571 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:13:06.571 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:13:06.701 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:13:06.731 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:13:06.731 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:13:06.731 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:13:06.861 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:13:06.891 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:13:07.321 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:13:07.351 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:13:07.351 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:13:07.351 -07 000000610 INF: =================== Cycle #97 ===================
17-03-18 02:13:07.351 -07 000000610 INF: =================== Cycle #97, Flow Cell Temp 65° ===================
17-03-18 02:13:07.351 -07 000000610 INF: =================== Cycle #97, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 02:13:07.351 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 02:13:07.351 -07 000000579 INF: FPGA: Recv TEC2TEMP 
17-03-18 02:13:07.361 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:13:07.361 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:13:07.361 -07 000000626 INF: FPGA: Recv TEC2EN 
17-03-18 02:13:07.371 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:13:07.371 -07 000000610 INF: =================== Cycle #97, Flow Cell Temp 65° ===================
17-03-18 02:13:07.371 -07 000000610 INF: =================== Cycle #97 ===================
17-03-18 02:13:07.371 -07 000000610 INF: WaitCommand(30000) start
17-03-18 02:13:07.381 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 3.970374,
17-03-18 02:13:11.461 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:13:11.461 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:13:12.741 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 4.000345,
17-03-18 02:13:16.461 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:13:16.461 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:13:18.101 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 3.99219,
17-03-18 02:13:21.461 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:13:21.461 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:13:23.461 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 4.011254,
17-03-18 02:13:26.460 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:13:26.460 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:13:28.820 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 4.007176,
17-03-18 02:13:31.460 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:13:31.460 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:13:34.180 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 3.996267,
17-03-18 02:13:36.460 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:13:36.460 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:13:37.380 -07 000000610 INF: WaitCommand(30000) end
17-03-18 02:13:37.380 -07 000000610 INF: =================== Cycle #97, Pumping Reagent PR2 (3) ===================
17-03-18 02:13:37.380 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 02:13:37.480 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:13:37.510 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:13:37.510 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:13:37.510 -07 000000610 INF: =================== Cycle #97, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:13:37.640 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 02:13:37.680 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:13:38.220 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:13:38.250 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:13:38.250 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 02:13:38.250 -07 000000610 INF: =================== Cycle #97, Pumping Reagent PR2 (3) ===================
17-03-18 02:13:38.380 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:13:38.410 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:13:38.410 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:13:38.540 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:13:38.570 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:13:38.570 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:13:38.570 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:13:38.700 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:13:38.730 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:13:39.160 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:13:39.190 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:13:39.190 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:13:39.190 -07 000000610 INF: =================== Cycle #97 ===================
17-03-18 02:13:39.190 -07 000000502 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:13:39.190 -07 000000467 INF: WaitCommand(30000) start
17-03-18 02:13:39.190 -07 000000502 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:13:39.540 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 4.014009,
17-03-18 02:13:40.410 -07 000000502 INF: AsyncDelayTimer waited 1215ms
17-03-18 02:13:40.410 -07 000000502 INF: LanePump: Xmit /1?\r
17-03-18 02:13:40.440 -07 000000502 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:13:40.440 -07 000000502 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:13:40.570 -07 000000502 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:13:40.610 -07 000000502 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:13:41.460 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:13:41.460 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:13:42.950 -07 000000502 INF: LanePump: Xmit /1Q\r
17-03-18 02:13:42.980 -07 000000502 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:13:43.400 -07 000000502 INF: LanePump: Xmit /1Q\r
17-03-18 02:13:43.430 -07 000000502 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:13:43.430 -07 000000502 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 02:13:43.430 -07 000000502 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:13:43.430 -07 000000502 INF: ===================  ===================
17-03-18 02:13:44.900 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 3.98264,
17-03-18 02:13:46.460 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:13:46.460 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:13:50.260 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 3.993549,
17-03-18 02:13:51.460 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:13:51.460 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:13:55.620 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 3.981281,
17-03-18 02:13:56.470 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:13:56.470 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:14:00.980 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 3.997626,
17-03-18 02:14:01.470 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:14:01.470 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:14:06.340 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 4.015368,
17-03-18 02:14:06.470 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:14:06.470 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:14:09.200 -07 000000467 INF: WaitCommand(30000) end
17-03-18 02:14:09.200 -07 000000610 INF: =================== Cycle #97, Flow Cell Temp 22° ===================
17-03-18 02:14:09.200 -07 000000610 INF: =================== Cycle #97, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 02:14:09.200 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 02:14:09.200 -07 000000430 INF: FPGA: Recv TEC2TEMP 
17-03-18 02:14:09.210 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:14:09.210 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:14:09.210 -07 000000629 INF: FPGA: Recv TEC2EN 
17-03-18 02:14:09.220 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:09.220 -07 000000610 INF: =================== Cycle #97, Flow Cell Temp 22° ===================
17-03-18 02:14:09.220 -07 000000610 INF: =================== Cycle #97 ===================
17-03-18 02:14:09.220 -07 000000610 INF: =================== Cycle #97, Pumping Reagent PR2 (3) ===================
17-03-18 02:14:09.220 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 02:14:09.220 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:14:09.250 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:14:09.250 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:14:09.250 -07 000000610 INF: =================== Cycle #97, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:14:09.380 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 02:14:09.420 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:14:11.460 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:14:11.470 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:14:11.700 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 4.031682,
17-03-18 02:14:12.550 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:14:12.580 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:14:13.000 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:14:13.030 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:14:13.450 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:14:13.480 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:14:13.480 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 02:14:13.480 -07 000000610 INF: =================== Cycle #97, Pumping Reagent PR2 (3) ===================
17-03-18 02:14:13.609 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:14:13.639 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:14:13.639 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:14:13.769 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:14:13.799 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:14:13.799 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:14:13.799 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:14:13.929 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:14:13.959 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:14:14.389 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:14:14.419 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:14:14.419 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:14:14.419 -07 000000610 INF: =================== Cycle #97 ===================
17-03-18 02:14:15.639 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:14:15.639 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 02:14:15.639 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:14:15.659 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:14:15.659 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 02:14:15.659 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 02:14:15.809 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:14:15.829 -07 000000610 INF: ReagentValve: Recv 00E2\r
17-03-18 02:14:15.829 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 226 steps, expected 204. Error = 22 steps (10.8%)
17-03-18 02:14:15.879 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:14:15.899 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 02:14:15.899 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:14:15.999 -07 000000610 INF: =================== Cycle #97, Pumping Reagent USM (2) ===================
17-03-18 02:14:15.999 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:14:15.999 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:14:16.029 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:14:16.029 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:14:16.029 -07 000000610 INF: =================== Cycle #97, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 02:14:16.159 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:14:16.199 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:14:16.459 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:14:16.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:14:17.059 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 4.045313,
17-03-18 02:14:17.639 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:14:17.669 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:14:18.089 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:14:18.119 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:14:18.119 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 02:14:18.119 -07 000000610 INF: =================== Cycle #97, Pumping Reagent USM (2) ===================
17-03-18 02:14:18.249 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:14:18.279 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:14:18.279 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:14:18.409 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:14:18.439 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:14:18.439 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:14:18.439 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:14:18.569 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:14:18.599 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:14:19.029 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:14:19.059 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:14:19.059 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:14:19.059 -07 000000610 INF: =================== Cycle #97 ===================
17-03-18 02:14:20.279 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:14:20.279 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:14:20.279 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:14:20.299 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 02:14:20.299 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 02:14:20.299 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:14:20.449 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:14:20.469 -07 000000610 INF: ReagentValve: Recv 00E2\r
17-03-18 02:14:20.469 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 226 steps, expected 204. Error = 22 steps (10.8%)
17-03-18 02:14:20.519 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:14:20.539 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:14:20.539 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:14:20.639 -07 000000610 INF: =================== Cycle #97, Pumping Reagent PR2 (3) ===================
17-03-18 02:14:20.639 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:14:20.639 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:14:20.669 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:14:20.669 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:14:20.669 -07 000000610 INF: =================== Cycle #97, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:14:20.799 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:14:20.839 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:14:21.459 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:14:21.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:14:21.709 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:14:21.739 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:14:21.739 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 02:14:21.739 -07 000000610 INF: =================== Cycle #97, Pumping Reagent PR2 (3) ===================
17-03-18 02:14:21.869 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:14:21.899 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:14:21.899 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:14:22.029 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:14:22.059 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:14:22.059 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:14:22.059 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:14:22.189 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:14:22.219 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:14:22.419 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 4.031682,
17-03-18 02:14:22.649 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:14:22.679 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:14:22.679 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:14:22.679 -07 000000610 INF: =================== Cycle #97 ===================
17-03-18 02:14:22.679 -07 000000455 INF: WaitCommand(10000) start
17-03-18 02:14:22.679 -07 000000444 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:14:22.679 -07 000000444 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:14:23.899 -07 000000444 INF: AsyncDelayTimer waited 1216ms
17-03-18 02:14:23.899 -07 000000444 INF: LanePump: Xmit /1?\r
17-03-18 02:14:23.929 -07 000000444 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:14:23.929 -07 000000444 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:14:24.059 -07 000000444 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:14:24.099 -07 000000444 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:14:25.629 -07 000000444 INF: LanePump: Xmit /1Q\r
17-03-18 02:14:25.659 -07 000000444 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:14:26.079 -07 000000444 INF: LanePump: Xmit /1Q\r
17-03-18 02:14:26.109 -07 000000444 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:14:26.109 -07 000000444 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 02:14:26.109 -07 000000444 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:14:26.109 -07 000000444 INF: ===================  ===================
17-03-18 02:14:26.469 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:14:26.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:14:27.779 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 4.023489,
17-03-18 02:14:31.469 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:14:31.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:14:32.689 -07 000000455 INF: WaitCommand(10000) end
17-03-18 02:14:32.689 -07 000000610 INF: =================== Cycle #97, Imaging ===================
17-03-18 02:14:32.689 -07 000000610 INF: Imaging Cycle 97: ScanTilesCommand Cycle 97 time start.
17-03-18 02:14:32.689 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 02:14:32.689 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:14:32.719 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:14:32.719 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 02:14:32.719 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 02:14:33.019 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:14:33.039 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 02:14:33.039 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 02:14:33.089 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:14:33.109 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 02:14:33.109 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:14:33.109 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:14:33.109 -07 000000576 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 02:14:33.109 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:14:33.109 -07 000000576 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 02:14:33.109 -07 000000569 INF: FPGA: Recv EXLED1ON 
17-03-18 02:14:33.119 -07 000000576 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 02:14:33.119 -07 000000576 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 02:14:33.119 -07 000000502 INF: FPGA: Recv EXLED1ADCR 23184
17-03-18 02:14:33.129 -07 000000576 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:33.129 -07 000000576 INF: RedLED: Using Red data: Photodiode ADC 23184 --> 7.4 mW (old method), or 205.5 mW (new method). Difference = 198.0 mW
17-03-18 02:14:33.139 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 4.008536,
17-03-18 02:14:33.149 -07 000000576 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 02:14:33.149 -07 000000461 INF: FPGA: Recv EXLED1OFF 
17-03-18 02:14:33.159 -07 000000576 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:14:33.159 -07 000000576 INF: RedLED: LED was on for 40 ms
17-03-18 02:14:33.159 -07 000000576 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 43 ms.
17-03-18 02:14:33.159 -07 000000576 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 02:14:33.159 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:14:33.179 -07 000000576 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 02:14:33.179 -07 000000444 INF: FPGA: Recv EXLED2ON 
17-03-18 02:14:33.189 -07 000000576 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:14:33.189 -07 000000576 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 02:14:33.189 -07 000000444 INF: FPGA: Recv EXLED1ADCR 2097
17-03-18 02:14:33.199 -07 000000576 INF: FPGA: 'EXLED1ADCR' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:33.199 -07 000000576 INF: GreenLED: Using Green data: Photodiode ADC 2097 --> 0.9 mW (old method), or 182.2 mW (new method). Difference = 181.3 mW
17-03-18 02:14:33.209 -07 000000576 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 02:14:33.209 -07 000000591 INF: FPGA: Recv EXLED2OFF 
17-03-18 02:14:33.219 -07 000000576 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:14:33.219 -07 000000576 INF: GreenLED: LED was on for 30 ms
17-03-18 02:14:33.219 -07 000000576 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 58 ms.
17-03-18 02:14:33.219 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 02:14:33.219 -07 000000467 INF: FPGA: Recv EMCUR 
17-03-18 02:14:33.229 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:14:33.229 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 02:14:33.729 -07 000000626 INF: FPGA: Recv EMOUT
17-03-18 02:14:33.729 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 494 ms to get response, and 503 ms overall
17-03-18 02:14:33.729 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 02:14:33.729 -07 000000561 INF: FPGA: Recv EMCUR 
17-03-18 02:14:33.739 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:14:33.739 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:14:33.739 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.3798828125, Z-Position -0.126792533637889. ------
17-03-18 02:14:33.739 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:14:33.739 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17909 mm
17-03-18 02:14:33.739 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:14:33.739 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:14:33.749 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:14:33.749 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 02:14:33.749 -07 000000561 INF: Y Motor: Moving to 59.9126 mm, started at 75.3799 mm, delta = -15.4673 mm
17-03-18 02:14:33.749 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:14:33.749 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 39122, sync = True, waitForSettling = False)
17-03-18 02:14:33.749 -07 000000579 INF: Z Motor: Moving to -0.179089 mm, started at -0.126793 mm, distance = -52.30 um
17-03-18 02:14:33.759 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:14:33.759 -07 000000606 INF: FPGA: Recv YRDPOS 154378
17-03-18 02:14:33.769 -07 000000579 INF: FPGA: Xmit ZDACW 39122\n [Z Motor]
17-03-18 02:14:33.769 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:14:33.769 -07 000000561 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:14:33.769 -07 000000561 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 02:14:33.769 -07 000000561 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 02:14:33.769 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:14:33.779 -07 000000579 INF: FPGA: 'ZDACW 39122' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:14:33.779 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:14:33.779 -07 000000590 INF: FPGA: Recv ZDACR 39122
17-03-18 02:14:33.789 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:33.789 -07 000000579 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 02:14:33.789 -07 000000561 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 02:14:33.949 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:14:33.949 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:14:35.469 -07 000000462 INF: FPGA: Recv YMVTO 122703 24775
17-03-18 02:14:35.469 -07 000000561 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1705 ms overall
17-03-18 02:14:35.469 -07 000000561 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 02:14:35.469 -07 000000561 INF: Y Motor: To move from 75.380 to 59.913 (-15.467 mm) should take 24748 steps, but required 24775 steps (15.484 mm). Slippage = 0.017 mm (0.00%).
17-03-18 02:14:35.469 -07 000000561 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1705 ms, distance = 15.467 mm, average velocity = 9.072 mm/sec
17-03-18 02:14:36.469 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:14:36.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:14:38.319 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:14:38.319 -07 000000576 INF: FPGA: Recv YRDPOS 122696
17-03-18 02:14:38.329 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:14:38.329 -07 000000561 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:14:38.349 -07 000000561 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:14:38.349 -07 000000561 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 02:14:38.349 -07 000000561 INF: Y Motor: Moved to 59.9102 after 4608 ms
17-03-18 02:14:38.359 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179089 mm (DAC = 39122)
17-03-18 02:14:38.359 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:38.359 -07 000000606 INF: FPGA: Recv ZSGSRD 37169
17-03-18 02:14:38.369 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:14:38.369 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:38.369 -07 000000576 INF: FPGA: Recv ZSGSRD 37165
17-03-18 02:14:38.379 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:38.379 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:38.379 -07 000000444 INF: FPGA: Recv ZSGSRD 37164
17-03-18 02:14:38.389 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:38.389 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:38.389 -07 000000579 INF: FPGA: Recv ZSGSRD 37164
17-03-18 02:14:38.399 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:38.399 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:38.399 -07 000000606 INF: FPGA: Recv ZSGSRD 37172
17-03-18 02:14:38.409 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:38.409 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:38.409 -07 000000467 INF: FPGA: Recv ZSGSRD 37167
17-03-18 02:14:38.419 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:38.419 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:38.419 -07 000000444 INF: FPGA: Recv ZSGSRD 37166
17-03-18 02:14:38.429 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:38.429 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:38.429 -07 000000455 INF: FPGA: Recv ZSGSRD 37166
17-03-18 02:14:38.439 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:38.439 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:38.439 -07 000000461 INF: FPGA: Recv ZSGSRD 37169
17-03-18 02:14:38.449 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:38.449 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:38.449 -07 000000502 INF: FPGA: Recv ZSGSRD 37167
17-03-18 02:14:38.459 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:38.459 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:14:38.459 -07 000000561 INF: FPGA: Recv ZPIEZORD 33488
17-03-18 02:14:38.469 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:38.469 -07 000000512 INF: Z Motor: Piezo is near 51.5 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.970 V. Piezo Error = -8.2 V.
17-03-18 02:14:38.469 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.1 um, Read 10 ADC samples: Avg = 37167 (-178.2 uncal um), Error = 0.9 uncal um, Median = 37166 (-178.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 37164 (-178.2 uncal um), Max = 37172 (-178.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:14:38.469 -07 000000512 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37167, posNoise = 5, negNoise = 3
17-03-18 02:14:38.469 -07 000000512 INF: Z Motor: After move to -0.179089, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:14:38.469 -07 000000512 INF: Z Motor: Settle wait time = 4610 ms, measure time = 109 ms (allowed 150 ms), total time = 4719 ms
17-03-18 02:14:38.469 -07 000000512 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:14:38.519 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4775 ms
17-03-18 02:14:38.519 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:14:38.519 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:14:38.519 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:14:38.519 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:14:38.519 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:14:38.519 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:14:38.519 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:14:38.519 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:14:38.519 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 02:14:38.529 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 3.986717,
17-03-18 02:14:38.549 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 22 ms.
17-03-18 02:14:38.549 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:14:38.549 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:14:38.549 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:14:38.559 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 02:14:38.559 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 36 ms.
17-03-18 02:14:38.569 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:14:38.609 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:14:38.909 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:14:38.909 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:14:38.909 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:14:38.909 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592532864, 0x0, 559484976) start.
17-03-18 02:14:38.949 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:14:38.949 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 02:14:38.949 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 385 ms overall
17-03-18 02:14:39.039 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592532864, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:14:39.039 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:14:39.039 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:14:39.039 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 02:14:39.049 -07 000000444 INF: Image SNR check: start
17-03-18 02:14:39.049 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:14:39.049 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:14:39.059 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:14:39.059 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:14:39.059 -07 000000444 INF: Image SNR check: pass  [peak (Max-Min)=153.91]
17-03-18 02:14:39.059 -07 000000444 INF: Autofocus start
17-03-18 02:14:39.059 -07 000000444 INF: MeasureProfile start
17-03-18 02:14:39.069 -07 000000444 INF: MeasureProfile done
17-03-18 02:14:39.079 -07 000000444 INF: X=-32  Z correction [um]=-0.2344
17-03-18 02:14:39.079 -07 000000444 INF: Autofocus finished
17-03-18 02:14:39.259 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:14:39.259 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:14:39.259 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.179092044683964. ----------
17-03-18 02:14:39.259 -07 000000610 INF: Cycle	97	Tile	1	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:14:39.269 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37583, sync = True, waitForSettling = True)
17-03-18 02:14:39.269 -07 000000610 INF: Z Motor: Moving to -0.172044 mm, started at -0.179092 mm, distance = 7.05 um
17-03-18 02:14:39.269 -07 000000610 INF: FPGA: Xmit ZDACW 37583\n [Z Motor]
17-03-18 02:14:39.269 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:14:39.279 -07 000000610 INF: FPGA: 'ZDACW 37583' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:14:39.279 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:14:39.279 -07 000000461 INF: FPGA: Recv ZDACR 37583
17-03-18 02:14:39.289 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:39.289 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:14:39.439 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:39.439 -07 000000606 INF: FPGA: Recv ZSGSRD 36073
17-03-18 02:14:39.449 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:39.449 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:39.449 -07 000000444 INF: FPGA: Recv ZSGSRD 36071
17-03-18 02:14:39.459 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:39.459 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:39.459 -07 000000576 INF: FPGA: Recv ZSGSRD 36073
17-03-18 02:14:39.469 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:39.469 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:39.469 -07 000000569 INF: FPGA: Recv ZSGSRD 36075
17-03-18 02:14:39.479 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:39.479 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:39.479 -07 000000455 INF: FPGA: Recv ZSGSRD 36071
17-03-18 02:14:39.489 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:39.489 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:39.489 -07 000000424 INF: FPGA: Recv ZSGSRD 36069
17-03-18 02:14:39.499 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:39.499 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:39.499 -07 000000626 INF: FPGA: Recv ZSGSRD 36069
17-03-18 02:14:39.509 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:39.509 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:39.509 -07 000000444 INF: FPGA: Recv ZSGSRD 36073
17-03-18 02:14:39.519 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:39.519 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:39.519 -07 000000569 INF: FPGA: Recv ZSGSRD 36074
17-03-18 02:14:39.529 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:39.529 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:39.529 -07 000000591 INF: FPGA: Recv ZSGSRD 36068
17-03-18 02:14:39.539 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:39.539 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:14:39.539 -07 000000462 INF: FPGA: Recv ZPIEZORD 32027
17-03-18 02:14:39.549 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:39.549 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.735 V. Piezo Error = -8.9 V.
17-03-18 02:14:39.549 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36072 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36072 (-171.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36068 (-171.2 uncal um), Max = 36075 (-171.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:14:39.549 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36072, posNoise = 3, negNoise = 4
17-03-18 02:14:39.549 -07 000000610 INF: Z Motor: After move to -0.172044, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:14:39.549 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:14:39.549 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:14:39.549 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:14:39.549 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:14:39.549 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:14:39.549 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:14:39.549 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:14:39.549 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:14:39.549 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:14:39.549 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:14:39.549 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:14:39.549 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 02:14:39.549 -07 000000467 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 02:14:39.559 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:14:39.559 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:14:39.569 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:14:39.569 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:14:39.579 -07 000000467 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 02:14:39.579 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:14:39.579 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:14:39.579 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:14:39.599 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 02:14:39.599 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 45 ms.
17-03-18 02:14:39.599 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37760 150\n [Camera]
17-03-18 02:14:39.799 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:14:40.189 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:14:40.189 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:14:40.189 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:14:40.189 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:14:40.189 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 648609776, 0x0, 391868352) start.
17-03-18 02:14:40.189 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:14:40.189 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:14:40.199 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:14:40.309 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:14:40.309 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:14:40.379 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37760 779
17-03-18 02:14:40.529 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:14:40.579 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 648609776, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 02:14:40.579 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:14:40.579 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:14:40.589 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:14:40.589 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:14:40.689 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 02:14:40.689 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 02:14:40.689 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:14:40.689 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:14:40.699 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 504 ms.
17-03-18 02:14:40.719 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:14:40.719 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:14:40.719 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:14:40.729 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:14:40.729 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:14:40.729 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:14:40.729 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:14:40.729 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:14:40.739 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:14:40.739 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:14:40.909 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:14:40.919 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:14:40.919 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37760 150' command took 2 ms to send, 1310 ms to get response, and 1317 ms overall
17-03-18 02:14:40.919 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:14:40.919 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.172057532388736. ------
17-03-18 02:14:40.919 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:14:40.919 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17802 mm
17-03-18 02:14:40.919 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:14:40.919 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:14:40.929 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:14:40.929 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:14:40.929 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 02:14:40.929 -07 000000591 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 02:14:40.929 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 38888, sync = True, waitForSettling = False)
17-03-18 02:14:40.929 -07 000000629 INF: Z Motor: Moving to -0.178018 mm, started at -0.172058 mm, distance = -5.96 um
17-03-18 02:14:40.939 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:14:40.939 -07 000000561 INF: FPGA: Recv YRDPOS 122696
17-03-18 02:14:40.949 -07 000000629 INF: FPGA: Xmit ZDACW 38888\n [Z Motor]
17-03-18 02:14:40.949 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 02:14:40.949 -07 000000591 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:14:40.949 -07 000000591 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:14:40.949 -07 000000591 INF: Y Motor: Moving 1332 steps2
17-03-18 02:14:40.949 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:14:40.959 -07 000000629 INF: FPGA: 'ZDACW 38888' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:14:40.959 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:14:40.959 -07 000000512 INF: FPGA: Recv ZDACR 38888
17-03-18 02:14:40.969 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:14:40.969 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:40.969 -07 000000629 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 02:14:41.129 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:14:41.129 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-18 02:14:41.129 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:14:41.129 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:14:41.129 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:14:41.139 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 02:14:41.139 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:14:41.139 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:14:41.139 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:14:41.139 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:14:41.139 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-18 02:14:41.149 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 02:14:41.339 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 02:14:41.339 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:14:41.379 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:14:41.379 -07 000000455 INF: FPGA: Recv YRDPOS 124380
17-03-18 02:14:41.389 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:14:41.389 -07 000000591 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:14:41.389 -07 000000591 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 02:14:41.389 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.097 mm/sec
17-03-18 02:14:41.469 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:14:41.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:14:42.339 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:14:42.339 -07 000000455 INF: FPGA: Recv YRDPOS 124380
17-03-18 02:14:42.349 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:14:42.349 -07 000000591 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:14:42.369 -07 000000591 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:14:42.369 -07 000000591 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:14:42.369 -07 000000591 INF: Y Motor: Moved to 60.7324 after 1447 ms (table move)
17-03-18 02:14:42.379 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178018 mm (DAC = 38888)
17-03-18 02:14:42.379 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:42.379 -07 000000461 INF: FPGA: Recv ZSGSRD 37012
17-03-18 02:14:42.389 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:14:42.389 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:42.389 -07 000000561 INF: FPGA: Recv ZSGSRD 37001
17-03-18 02:14:42.399 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:42.399 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:42.399 -07 000000430 INF: FPGA: Recv ZSGSRD 37000
17-03-18 02:14:42.409 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:42.409 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:42.409 -07 000000606 INF: FPGA: Recv ZSGSRD 36998
17-03-18 02:14:42.419 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:42.419 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:42.419 -07 000000444 INF: FPGA: Recv ZSGSRD 37006
17-03-18 02:14:42.429 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:42.429 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:42.429 -07 000000512 INF: FPGA: Recv ZSGSRD 37005
17-03-18 02:14:42.439 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:42.439 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:42.439 -07 000000430 INF: FPGA: Recv ZSGSRD 36999
17-03-18 02:14:42.449 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:42.449 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:42.449 -07 000000502 INF: FPGA: Recv ZSGSRD 37000
17-03-18 02:14:42.459 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:42.459 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:42.459 -07 000000444 INF: FPGA: Recv ZSGSRD 37004
17-03-18 02:14:42.469 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:42.469 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:42.469 -07 000000455 INF: FPGA: Recv ZSGSRD 37003
17-03-18 02:14:42.479 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:42.479 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:14:42.479 -07 000000430 INF: FPGA: Recv ZPIEZORD 33251
17-03-18 02:14:42.489 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:42.489 -07 000000424 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.934 V. Piezo Error = -8.3 V.
17-03-18 02:14:42.489 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.0 um, Read 10 ADC samples: Avg = 37003 (-177.1 uncal um), Error = 0.9 uncal um, Median = 37002 (-177.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36998 (-177.1 uncal um), Max = 37012 (-177.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:14:42.489 -07 000000424 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37003, posNoise = 9, negNoise = 5
17-03-18 02:14:42.489 -07 000000424 INF: Z Motor: After move to -0.178018, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:14:42.489 -07 000000424 INF: Z Motor: Settle wait time = 1451 ms, measure time = 106 ms (allowed 150 ms), total time = 1557 ms
17-03-18 02:14:42.489 -07 000000424 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:14:42.539 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 02:14:42.539 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:14:42.539 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:14:42.539 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:14:42.539 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:14:42.539 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:14:42.539 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:14:42.539 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:14:42.539 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:14:42.539 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:14:42.549 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:14:42.549 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:14:42.559 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:14:42.559 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:14:42.559 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:14:42.609 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:14:42.909 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:14:42.909 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:14:42.909 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:14:42.909 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 02:14:42.949 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:14:42.949 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 02:14:42.949 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 02:14:43.039 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:14:43.039 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:14:43.039 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:14:43.039 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 02:14:43.049 -07 000000590 INF: Autofocus start
17-03-18 02:14:43.049 -07 000000590 INF: MeasureProfile start
17-03-18 02:14:43.049 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:14:43.049 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:14:43.059 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:14:43.059 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:14:43.059 -07 000000590 INF: MeasureProfile done
17-03-18 02:14:43.059 -07 000000590 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:14:43.059 -07 000000590 INF: Autofocus finished
17-03-18 02:14:43.259 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:14:43.259 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:14:43.259 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.178038473892716. ----------
17-03-18 02:14:43.259 -07 000000610 INF: Cycle	97	Tile	2	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:14:43.269 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37421, sync = True, waitForSettling = True)
17-03-18 02:14:43.269 -07 000000610 INF: Z Motor: Moving to -0.171302 mm, started at -0.178038 mm, distance = 6.74 um
17-03-18 02:14:43.269 -07 000000610 INF: FPGA: Xmit ZDACW 37421\n [Z Motor]
17-03-18 02:14:43.269 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:14:43.279 -07 000000610 INF: FPGA: 'ZDACW 37421' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:14:43.279 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:14:43.279 -07 000000591 INF: FPGA: Recv ZDACR 37421
17-03-18 02:14:43.289 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:43.289 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:14:43.449 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:43.449 -07 000000561 INF: FPGA: Recv ZSGSRD 35958
17-03-18 02:14:43.459 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:14:43.459 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:43.459 -07 000000430 INF: FPGA: Recv ZSGSRD 35958
17-03-18 02:14:43.469 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:43.469 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:43.469 -07 000000629 INF: FPGA: Recv ZSGSRD 35959
17-03-18 02:14:43.479 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:43.479 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:43.479 -07 000000467 INF: FPGA: Recv ZSGSRD 35954
17-03-18 02:14:43.489 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:43.489 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:43.489 -07 000000591 INF: FPGA: Recv ZSGSRD 35954
17-03-18 02:14:43.499 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:43.499 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:43.499 -07 000000561 INF: FPGA: Recv ZSGSRD 35960
17-03-18 02:14:43.509 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:43.509 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:43.509 -07 000000576 INF: FPGA: Recv ZSGSRD 35960
17-03-18 02:14:43.519 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:43.519 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:43.519 -07 000000502 INF: FPGA: Recv ZSGSRD 35954
17-03-18 02:14:43.529 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:43.529 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:43.529 -07 000000467 INF: FPGA: Recv ZSGSRD 35958
17-03-18 02:14:43.539 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:43.539 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:43.539 -07 000000569 INF: FPGA: Recv ZSGSRD 35956
17-03-18 02:14:43.549 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:43.549 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:14:43.549 -07 000000561 INF: FPGA: Recv ZPIEZORD 31836
17-03-18 02:14:43.559 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:43.559 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.710 V. Piezo Error = -9.1 V.
17-03-18 02:14:43.559 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.3 um, Read 10 ADC samples: Avg = 35957 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35958 (-170.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35954 (-170.4 uncal um), Max = 35960 (-170.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:14:43.559 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35957, posNoise = 3, negNoise = 3
17-03-18 02:14:43.559 -07 000000610 INF: Z Motor: After move to -0.171302, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:14:43.559 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 02:14:43.559 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:14:43.559 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:14:43.559 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:14:43.559 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:14:43.559 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:14:43.559 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:14:43.559 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:14:43.559 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:14:43.559 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:14:43.559 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:14:43.559 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:14:43.559 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:14:43.569 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:14:43.569 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:14:43.569 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:14:43.569 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:14:43.579 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 02:14:43.579 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:14:43.579 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 02:14:43.579 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:14:43.579 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37597 150\n [Camera]
17-03-18 02:14:43.779 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:14:43.889 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 3.994908,
17-03-18 02:14:44.179 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:14:44.179 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:14:44.179 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:14:44.179 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:14:44.179 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 02:14:44.179 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:14:44.179 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:14:44.189 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:14:44.189 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:14:44.189 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 02:14:44.369 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37597 779
17-03-18 02:14:44.519 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:14:44.579 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 02:14:44.579 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:14:44.579 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:14:44.589 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:14:44.589 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:14:44.589 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:14:44.589 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:14:44.589 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:14:44.589 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:14:44.599 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:14:44.709 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:14:44.709 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:14:44.709 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:14:44.709 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:14:44.709 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:14:44.709 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:14:44.709 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:14:44.709 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:14:44.829 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:14:44.829 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 02:14:44.899 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:14:44.899 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:14:44.899 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37597 150' command took 4 ms to send, 1307 ms to get response, and 1318 ms overall
17-03-18 02:14:44.909 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:14:44.909 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.171318747992434. ------
17-03-18 02:14:44.909 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:14:44.909 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17800 mm
17-03-18 02:14:44.909 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:14:44.909 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 02:14:44.909 -07 000000467 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 02:14:44.909 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 38884, sync = True, waitForSettling = False)
17-03-18 02:14:44.909 -07 000000576 INF: Z Motor: Moving to -0.178000 mm, started at -0.171319 mm, distance = -6.68 um
17-03-18 02:14:44.909 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:14:44.919 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:14:44.919 -07 000000576 INF: FPGA: Xmit ZDACW 38884\n [Z Motor]
17-03-18 02:14:44.919 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:14:44.929 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:14:44.929 -07 000000576 INF: FPGA: 'ZDACW 38884' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:14:44.929 -07 000000569 INF: FPGA: Recv YRDPOS 124380
17-03-18 02:14:44.939 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:14:44.939 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:14:44.939 -07 000000467 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:14:44.939 -07 000000467 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:14:44.939 -07 000000467 INF: Y Motor: Moving 1344 steps-21
17-03-18 02:14:44.949 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:14:44.949 -07 000000606 INF: FPGA: Recv ZDACR 38884
17-03-18 02:14:44.959 -07 000000576 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:14:44.959 -07 000000576 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 02:14:44.959 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:14:45.099 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 02:14:45.099 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:14:45.099 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:14:45.109 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:14:45.109 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:14:45.139 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:14:45.139 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:14:45.219 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 02:14:45.219 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 02:14:45.219 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:14:45.219 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:14:45.219 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 510 ms.
17-03-18 02:14:45.329 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 02:14:45.329 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:14:45.379 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:14:45.379 -07 000000444 INF: FPGA: Recv YRDPOS 126081
17-03-18 02:14:45.389 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:14:45.389 -07 000000467 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:14:45.389 -07 000000467 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 02:14:45.389 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.111 mm/sec
17-03-18 02:14:46.339 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:14:46.349 -07 000000629 INF: FPGA: Recv YRDPOS 126081
17-03-18 02:14:46.359 -07 000000467 INF: FPGA: 'YRDPOS' command took 12 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:14:46.359 -07 000000467 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:14:46.379 -07 000000467 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:14:46.379 -07 000000467 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:14:46.379 -07 000000467 INF: Y Motor: Moved to 61.5630 after 1472 ms (table move)
17-03-18 02:14:46.389 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178000 mm (DAC = 38884)
17-03-18 02:14:46.389 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:46.389 -07 000000462 INF: FPGA: Recv ZSGSRD 36994
17-03-18 02:14:46.399 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:14:46.399 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:46.399 -07 000000579 INF: FPGA: Recv ZSGSRD 36998
17-03-18 02:14:46.409 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:46.409 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:46.409 -07 000000455 INF: FPGA: Recv ZSGSRD 36998
17-03-18 02:14:46.419 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:46.419 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:46.419 -07 000000569 INF: FPGA: Recv ZSGSRD 37004
17-03-18 02:14:46.429 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:46.429 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:46.429 -07 000000606 INF: FPGA: Recv ZSGSRD 36995
17-03-18 02:14:46.439 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:46.439 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:46.439 -07 000000579 INF: FPGA: Recv ZSGSRD 36998
17-03-18 02:14:46.449 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:46.449 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:46.449 -07 000000467 INF: FPGA: Recv ZSGSRD 36997
17-03-18 02:14:46.459 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:46.459 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:46.459 -07 000000590 INF: FPGA: Recv ZSGSRD 36996
17-03-18 02:14:46.469 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:46.469 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:46.469 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:14:46.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:14:46.469 -07 000000461 INF: FPGA: Recv ZSGSRD 37006
17-03-18 02:14:46.479 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:46.479 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:46.479 -07 000000590 INF: FPGA: Recv ZSGSRD 36999
17-03-18 02:14:46.489 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:46.489 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:14:46.489 -07 000000467 INF: FPGA: Recv ZPIEZORD 33247
17-03-18 02:14:46.499 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:46.499 -07 000000561 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.933 V. Piezo Error = -8.3 V.
17-03-18 02:14:46.499 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.0 um, Read 10 ADC samples: Avg = 36998 (-177.1 uncal um), Error = 0.9 uncal um, Median = 36998 (-177.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36994 (-177.1 uncal um), Max = 37006 (-177.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:14:46.499 -07 000000561 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36998, posNoise = 8, negNoise = 4
17-03-18 02:14:46.499 -07 000000561 INF: Z Motor: After move to -0.178000, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:14:46.499 -07 000000561 INF: Z Motor: Settle wait time = 1475 ms, measure time = 108 ms (allowed 150 ms), total time = 1583 ms
17-03-18 02:14:46.499 -07 000000561 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:14:46.549 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1636 ms
17-03-18 02:14:46.549 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:14:46.549 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:14:46.549 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:14:46.549 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:14:46.549 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:14:46.549 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:14:46.549 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:14:46.549 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:14:46.549 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:14:46.559 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:14:46.559 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:14:46.559 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:14:46.559 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:14:46.569 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:14:46.609 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:14:46.909 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:14:46.909 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:14:46.909 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:14:46.909 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 02:14:46.949 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:14:46.949 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 02:14:46.949 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:14:47.029 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 02:14:47.029 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:14:47.029 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:14:47.029 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 02:14:47.049 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:14:47.049 -07 000000502 INF: Autofocus start
17-03-18 02:14:47.049 -07 000000502 INF: MeasureProfile start
17-03-18 02:14:47.049 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:14:47.059 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:14:47.059 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:14:47.069 -07 000000502 INF: MeasureProfile done
17-03-18 02:14:47.069 -07 000000502 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:14:47.069 -07 000000502 INF: Autofocus finished
17-03-18 02:14:47.259 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:14:47.259 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:14:47.259 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.178006352832007. ----------
17-03-18 02:14:47.269 -07 000000610 INF: Cycle	97	Tile	3	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:14:47.269 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37399, sync = True, waitForSettling = True)
17-03-18 02:14:47.269 -07 000000610 INF: Z Motor: Moving to -0.171202 mm, started at -0.178006 mm, distance = 6.80 um
17-03-18 02:14:47.269 -07 000000610 INF: FPGA: Xmit ZDACW 37399\n [Z Motor]
17-03-18 02:14:47.269 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:14:47.279 -07 000000610 INF: FPGA: 'ZDACW 37399' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:14:47.279 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:14:47.279 -07 000000467 INF: FPGA: Recv ZDACR 37399
17-03-18 02:14:47.289 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:47.289 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:14:47.439 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:47.439 -07 000000590 INF: FPGA: Recv ZSGSRD 35944
17-03-18 02:14:47.449 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:14:47.449 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:47.449 -07 000000461 INF: FPGA: Recv ZSGSRD 35937
17-03-18 02:14:47.459 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:47.459 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:47.459 -07 000000462 INF: FPGA: Recv ZSGSRD 35938
17-03-18 02:14:47.469 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:47.469 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:47.469 -07 000000579 INF: FPGA: Recv ZSGSRD 35945
17-03-18 02:14:47.479 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:47.479 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:47.479 -07 000000569 INF: FPGA: Recv ZSGSRD 35941
17-03-18 02:14:47.489 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:47.489 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:47.489 -07 000000606 INF: FPGA: Recv ZSGSRD 35947
17-03-18 02:14:47.499 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:47.499 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:47.499 -07 000000461 INF: FPGA: Recv ZSGSRD 35941
17-03-18 02:14:47.509 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:47.509 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:47.509 -07 000000561 INF: FPGA: Recv ZSGSRD 35943
17-03-18 02:14:47.519 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:47.519 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:47.519 -07 000000576 INF: FPGA: Recv ZSGSRD 35946
17-03-18 02:14:47.529 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:47.529 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:47.529 -07 000000467 INF: FPGA: Recv ZSGSRD 35935
17-03-18 02:14:47.539 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:47.539 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:14:47.539 -07 000000590 INF: FPGA: Recv ZPIEZORD 31821
17-03-18 02:14:47.549 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:47.549 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.707 V. Piezo Error = -9.1 V.
17-03-18 02:14:47.549 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35942 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35942 (-170.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35935 (-170.3 uncal um), Max = 35947 (-170.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:14:47.549 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35942, posNoise = 5, negNoise = 7
17-03-18 02:14:47.549 -07 000000610 INF: Z Motor: After move to -0.171202, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:14:47.549 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:14:47.549 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:14:47.549 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:14:47.549 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:14:47.549 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:14:47.549 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:14:47.549 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:14:47.549 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:14:47.549 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:14:47.549 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:14:47.549 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:14:47.549 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:14:47.549 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:14:47.559 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:14:47.559 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:14:47.559 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:14:47.559 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:14:47.569 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 02:14:47.569 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:14:47.569 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:14:47.569 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:14:47.579 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37576 150\n [Camera]
17-03-18 02:14:47.779 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:14:48.169 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:14:48.169 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:14:48.169 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:14:48.169 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:14:48.169 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:14:48.169 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:14:48.179 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:14:48.179 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 02:14:48.179 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:14:48.179 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:14:48.359 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37576 779
17-03-18 02:14:48.509 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:14:48.559 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 02:14:48.559 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:14:48.559 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:14:48.559 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 02:14:48.559 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 02:14:48.559 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:14:48.569 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:14:48.569 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:14:48.569 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:14:48.569 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:14:48.699 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:14:48.699 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:14:48.699 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:14:48.699 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:14:48.699 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:14:48.709 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:14:48.819 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:14:48.819 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 02:14:48.829 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:14:48.829 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 02:14:48.889 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-18 02:14:48.889 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:14:48.889 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37576 150' command took 4 ms to send, 1308 ms to get response, and 1318 ms overall
17-03-18 02:14:48.899 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:14:48.899 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.171222384810307. ------
17-03-18 02:14:48.899 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:14:48.899 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17750 mm
17-03-18 02:14:48.899 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:14:48.899 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 02:14:48.899 -07 000000461 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 02:14:48.899 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 38774, sync = True, waitForSettling = False)
17-03-18 02:14:48.899 -07 000000591 INF: Z Motor: Moving to -0.177496 mm, started at -0.171222 mm, distance = -6.27 um
17-03-18 02:14:48.899 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:14:48.909 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:14:48.909 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:14:48.909 -07 000000629 INF: FPGA: Recv YRDPOS 126082
17-03-18 02:14:48.919 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:14:48.919 -07 000000591 INF: FPGA: Xmit ZDACW 38774\n [Z Motor]
17-03-18 02:14:48.919 -07 000000461 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:14:48.919 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:14:48.919 -07 000000461 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:14:48.919 -07 000000461 INF: Y Motor: Moving 1343 steps-20
17-03-18 02:14:48.929 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:14:48.929 -07 000000591 INF: FPGA: 'ZDACW 38774' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:14:48.939 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:14:48.959 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:14:48.959 -07 000000629 INF: FPGA: Recv ZDACR 38774
17-03-18 02:14:48.969 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 02:14:48.969 -07 000000591 INF: Z Motor: MoveAbsStepped took 63 ms (did NOT wait for settling yet))
17-03-18 02:14:49.129 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:14:49.129 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:14:49.209 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 02:14:49.209 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:14:49.209 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:14:49.209 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:14:49.219 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 02:14:49.219 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:14:49.219 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:14:49.219 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 516 ms.
17-03-18 02:14:49.219 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:14:49.219 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-18 02:14:49.269 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 3.96762,
17-03-18 02:14:49.309 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 02:14:49.309 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 392 ms overall
17-03-18 02:14:49.359 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:14:49.359 -07 000000569 INF: FPGA: Recv YRDPOS 127785
17-03-18 02:14:49.369 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:14:49.369 -07 000000461 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:14:49.369 -07 000000461 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 02:14:49.369 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.840 mm, average velocity = 2.142 mm/sec
17-03-18 02:14:50.319 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:14:50.319 -07 000000430 INF: FPGA: Recv YRDPOS 127785
17-03-18 02:14:50.329 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:14:50.329 -07 000000461 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:14:50.349 -07 000000461 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:14:50.349 -07 000000461 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:14:50.349 -07 000000461 INF: Y Motor: Moved to 62.3950 after 1450 ms (table move)
17-03-18 02:14:50.359 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177496 mm (DAC = 38774)
17-03-18 02:14:50.359 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:50.359 -07 000000579 INF: FPGA: Recv ZSGSRD 36922
17-03-18 02:14:50.369 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:50.369 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:50.369 -07 000000424 INF: FPGA: Recv ZSGSRD 36924
17-03-18 02:14:50.379 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:50.379 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:50.379 -07 000000502 INF: FPGA: Recv ZSGSRD 36915
17-03-18 02:14:50.389 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:50.389 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:50.389 -07 000000461 INF: FPGA: Recv ZSGSRD 36920
17-03-18 02:14:50.399 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:50.399 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:50.399 -07 000000579 INF: FPGA: Recv ZSGSRD 36920
17-03-18 02:14:50.409 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:50.409 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:50.409 -07 000000569 INF: FPGA: Recv ZSGSRD 36916
17-03-18 02:14:50.419 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:50.419 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:50.419 -07 000000561 INF: FPGA: Recv ZSGSRD 36921
17-03-18 02:14:50.429 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:50.429 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:50.429 -07 000000591 INF: FPGA: Recv ZSGSRD 36917
17-03-18 02:14:50.439 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:50.439 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:50.439 -07 000000590 INF: FPGA: Recv ZSGSRD 36920
17-03-18 02:14:50.449 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:50.449 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:50.449 -07 000000606 INF: FPGA: Recv ZSGSRD 36925
17-03-18 02:14:50.459 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:50.459 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:14:50.459 -07 000000579 INF: FPGA: Recv ZPIEZORD 33168
17-03-18 02:14:50.469 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:50.469 -07 000000576 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.917 V. Piezo Error = -8.3 V.
17-03-18 02:14:50.469 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.5 um, Read 10 ADC samples: Avg = 36920 (-176.6 uncal um), Error = 0.9 uncal um, Median = 36920 (-176.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36915 (-176.6 uncal um), Max = 36925 (-176.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:14:50.469 -07 000000576 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36920, posNoise = 5, negNoise = 5
17-03-18 02:14:50.469 -07 000000576 INF: Z Motor: After move to -0.177496, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:14:50.469 -07 000000576 INF: Z Motor: Settle wait time = 1453 ms, measure time = 110 ms (allowed 150 ms), total time = 1563 ms
17-03-18 02:14:50.469 -07 000000576 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:14:50.509 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-18 02:14:50.509 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:14:50.509 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:14:50.509 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:14:50.509 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:14:50.509 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:14:50.509 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:14:50.509 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:14:50.519 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:14:50.519 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:14:50.519 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:14:50.519 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:14:50.529 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:14:50.529 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:14:50.529 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:14:50.579 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:14:50.879 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:14:50.879 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:14:50.879 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:14:50.879 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 02:14:50.919 -07 000000576 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:14:50.919 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 02:14:50.919 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 02:14:51.009 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 02:14:51.009 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:14:51.009 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:14:51.009 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 02:14:51.019 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:14:51.019 -07 000000579 INF: Autofocus start
17-03-18 02:14:51.019 -07 000000579 INF: MeasureProfile start
17-03-18 02:14:51.019 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:14:51.029 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:14:51.029 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:14:51.029 -07 000000579 INF: MeasureProfile done
17-03-18 02:14:51.029 -07 000000579 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:14:51.029 -07 000000579 INF: Autofocus finished
17-03-18 02:14:51.229 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:14:51.229 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 02:14:51.239 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.177505264284949. ----------
17-03-18 02:14:51.239 -07 000000610 INF: Cycle	97	Tile	4	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:14:51.239 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37289, sync = True, waitForSettling = True)
17-03-18 02:14:51.239 -07 000000610 INF: Z Motor: Moving to -0.170698 mm, started at -0.177505 mm, distance = 6.81 um
17-03-18 02:14:51.239 -07 000000610 INF: FPGA: Xmit ZDACW 37289\n [Z Motor]
17-03-18 02:14:51.239 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:14:51.249 -07 000000610 INF: FPGA: 'ZDACW 37289' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:14:51.249 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:14:51.249 -07 000000626 INF: FPGA: Recv ZDACR 37289
17-03-18 02:14:51.259 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:51.259 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:14:51.409 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:51.409 -07 000000461 INF: FPGA: Recv ZSGSRD 35860
17-03-18 02:14:51.419 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:14:51.419 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:51.419 -07 000000561 INF: FPGA: Recv ZSGSRD 35866
17-03-18 02:14:51.429 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:51.429 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:51.429 -07 000000606 INF: FPGA: Recv ZSGSRD 35866
17-03-18 02:14:51.439 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:51.439 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:51.439 -07 000000502 INF: FPGA: Recv ZSGSRD 35861
17-03-18 02:14:51.449 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:51.449 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:51.449 -07 000000629 INF: FPGA: Recv ZSGSRD 35865
17-03-18 02:14:51.459 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:51.459 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:51.459 -07 000000461 INF: FPGA: Recv ZSGSRD 35861
17-03-18 02:14:51.469 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:51.469 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:51.469 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:14:51.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:14:51.469 -07 000000629 INF: FPGA: Recv ZSGSRD 35864
17-03-18 02:14:51.479 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:51.479 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:51.479 -07 000000430 INF: FPGA: Recv ZSGSRD 35862
17-03-18 02:14:51.489 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:51.489 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:51.489 -07 000000561 INF: FPGA: Recv ZSGSRD 35858
17-03-18 02:14:51.499 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:51.499 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:51.499 -07 000000569 INF: FPGA: Recv ZSGSRD 35864
17-03-18 02:14:51.509 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:51.509 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:14:51.509 -07 000000462 INF: FPGA: Recv ZPIEZORD 31756
17-03-18 02:14:51.519 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:51.519 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.690 V. Piezo Error = -9.1 V.
17-03-18 02:14:51.519 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35863 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35863 (-169.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35858 (-169.8 uncal um), Max = 35866 (-169.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:14:51.519 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35863, posNoise = 3, negNoise = 5
17-03-18 02:14:51.519 -07 000000610 INF: Z Motor: After move to -0.170698, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:14:51.519 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:14:51.519 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:14:51.519 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:14:51.519 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:14:51.519 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:14:51.519 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:14:51.519 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:14:51.519 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:14:51.519 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:14:51.519 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:14:51.519 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:14:51.519 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:14:51.519 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:14:51.519 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:14:51.519 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:14:51.519 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:14:51.519 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:14:51.529 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:14:51.529 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:14:51.529 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:14:51.539 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:14:51.539 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37466 150\n [Camera]
17-03-18 02:14:51.739 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:14:52.139 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:14:52.139 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:14:52.139 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:14:52.139 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:14:52.139 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:14:52.139 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:14:52.139 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:14:52.139 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1092550816, 0x0, 391868352) start.
17-03-18 02:14:52.149 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:14:52.149 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 02:14:52.329 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37466 779
17-03-18 02:14:52.479 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:14:52.519 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 02:14:52.519 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 02:14:52.519 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:14:52.519 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1092550816, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 02:14:52.519 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 02:14:52.519 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:14:52.519 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:14:52.529 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:14:52.529 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:14:52.529 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:14:52.659 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:14:52.669 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:14:52.669 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:14:52.669 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:14:52.669 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:14:52.669 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:14:52.669 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:14:52.669 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:14:52.669 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:14:52.669 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:14:52.859 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:14:52.859 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:14:52.859 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37466 150' command took 2 ms to send, 1311 ms to get response, and 1317 ms overall
17-03-18 02:14:52.859 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:14:52.859 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.170714872051108. ------
17-03-18 02:14:52.859 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:14:52.859 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17723 mm
17-03-18 02:14:52.859 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:14:52.869 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38715, sync = True, waitForSettling = False)
17-03-18 02:14:52.869 -07 000000461 INF: Z Motor: Moving to -0.177226 mm, started at -0.170715 mm, distance = -6.51 um
17-03-18 02:14:52.869 -07 000000461 INF: FPGA: Xmit ZDACW 38715\n [Z Motor]
17-03-18 02:14:52.869 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:14:52.869 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:14:52.869 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 02:14:52.869 -07 000000606 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 02:14:52.869 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:14:52.879 -07 000000461 INF: FPGA: 'ZDACW 38715' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:14:52.879 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:14:52.889 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:14:52.889 -07 000000430 INF: FPGA: Recv YRDPOS 127785
17-03-18 02:14:52.899 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:14:52.899 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:14:52.899 -07 000000606 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:14:52.899 -07 000000606 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:14:52.899 -07 000000606 INF: Y Motor: Moving 1340 steps-16
17-03-18 02:14:52.899 -07 000000512 INF: FPGA: Recv ZDACR 38715
17-03-18 02:14:52.909 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:14:52.909 -07 000000461 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 02:14:52.909 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:14:53.059 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 02:14:53.059 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:14:53.059 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:14:53.059 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 02:14:53.059 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:14:53.059 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:14:53.059 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:14:53.059 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:14:53.059 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:14:53.069 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:14:53.079 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:14:53.079 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 02:14:53.279 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 02:14:53.279 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:14:53.329 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:14:53.329 -07 000000455 INF: FPGA: Recv YRDPOS 129481
17-03-18 02:14:53.339 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:14:53.339 -07 000000606 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:14:53.339 -07 000000606 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:14:53.339 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.164 mm/sec
17-03-18 02:14:54.289 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:14:54.289 -07 000000561 INF: FPGA: Recv YRDPOS 129482
17-03-18 02:14:54.299 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:14:54.299 -07 000000606 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:14:54.319 -07 000000606 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:14:54.319 -07 000000606 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:14:54.319 -07 000000606 INF: Y Motor: Moved to 63.2236 after 1457 ms (table move)
17-03-18 02:14:54.329 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177226 mm (DAC = 38715)
17-03-18 02:14:54.329 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:54.329 -07 000000591 INF: FPGA: Recv ZSGSRD 36882
17-03-18 02:14:54.339 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:14:54.339 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:54.339 -07 000000576 INF: FPGA: Recv ZSGSRD 36881
17-03-18 02:14:54.349 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:54.349 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:54.349 -07 000000430 INF: FPGA: Recv ZSGSRD 36884
17-03-18 02:14:54.359 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:54.359 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:54.359 -07 000000512 INF: FPGA: Recv ZSGSRD 36884
17-03-18 02:14:54.369 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:54.369 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:54.369 -07 000000591 INF: FPGA: Recv ZSGSRD 36879
17-03-18 02:14:54.379 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:54.379 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:54.379 -07 000000576 INF: FPGA: Recv ZSGSRD 36878
17-03-18 02:14:54.389 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:54.389 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:54.389 -07 000000606 INF: FPGA: Recv ZSGSRD 36876
17-03-18 02:14:54.399 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:54.399 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:54.399 -07 000000579 INF: FPGA: Recv ZSGSRD 36872
17-03-18 02:14:54.409 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:54.409 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:54.409 -07 000000561 INF: FPGA: Recv ZSGSRD 36877
17-03-18 02:14:54.419 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:54.419 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:54.419 -07 000000626 INF: FPGA: Recv ZSGSRD 36883
17-03-18 02:14:54.429 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:54.429 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:14:54.429 -07 000000461 INF: FPGA: Recv ZPIEZORD 33087
17-03-18 02:14:54.439 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:54.439 -07 000000590 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.908 V. Piezo Error = -8.4 V.
17-03-18 02:14:54.439 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.2 um, Read 10 ADC samples: Avg = 36880 (-176.4 uncal um), Error = 0.9 uncal um, Median = 36880 (-176.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36872 (-176.3 uncal um), Max = 36884 (-176.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:14:54.439 -07 000000590 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36880, posNoise = 4, negNoise = 8
17-03-18 02:14:54.439 -07 000000590 INF: Z Motor: After move to -0.177226, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:14:54.439 -07 000000590 INF: Z Motor: Settle wait time = 1461 ms, measure time = 108 ms (allowed 150 ms), total time = 1569 ms
17-03-18 02:14:54.439 -07 000000590 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:14:54.489 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 02:14:54.489 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:14:54.489 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:14:54.489 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:14:54.489 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:14:54.489 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:14:54.489 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:14:54.489 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:14:54.489 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:14:54.489 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:14:54.499 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:14:54.499 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:14:54.509 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 02:14:54.509 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 02:14:54.509 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:14:54.549 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:14:54.629 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 3.970374,
17-03-18 02:14:54.849 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:14:54.849 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:14:54.849 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:14:54.849 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 02:14:54.889 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:14:54.889 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 02:14:54.889 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:14:54.969 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:14:54.969 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:14:54.969 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:14:54.969 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:14:54.989 -07 000000590 INF: Autofocus start
17-03-18 02:14:54.989 -07 000000590 INF: MeasureProfile start
17-03-18 02:14:54.989 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:14:54.989 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:14:54.999 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:14:54.999 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:14:54.999 -07 000000590 INF: MeasureProfile done
17-03-18 02:14:54.999 -07 000000590 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:14:54.999 -07 000000590 INF: Autofocus finished
17-03-18 02:14:55.199 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:14:55.199 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:14:55.199 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.177248295799279. ----------
17-03-18 02:14:55.199 -07 000000610 INF: Cycle	97	Tile	5	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:14:55.209 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37230, sync = True, waitForSettling = True)
17-03-18 02:14:55.209 -07 000000610 INF: Z Motor: Moving to -0.170428 mm, started at -0.177248 mm, distance = 6.82 um
17-03-18 02:14:55.209 -07 000000610 INF: FPGA: Xmit ZDACW 37230\n [Z Motor]
17-03-18 02:14:55.209 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:14:55.219 -07 000000610 INF: FPGA: 'ZDACW 37230' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:14:55.219 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:14:55.219 -07 000000576 INF: FPGA: Recv ZDACR 37230
17-03-18 02:14:55.229 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:55.229 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:14:55.379 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:55.379 -07 000000591 INF: FPGA: Recv ZSGSRD 35820
17-03-18 02:14:55.389 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:14:55.389 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:55.389 -07 000000569 INF: FPGA: Recv ZSGSRD 35826
17-03-18 02:14:55.399 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:55.399 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:55.399 -07 000000629 INF: FPGA: Recv ZSGSRD 35819
17-03-18 02:14:55.409 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:55.409 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:55.409 -07 000000626 INF: FPGA: Recv ZSGSRD 35822
17-03-18 02:14:55.419 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:55.419 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:55.419 -07 000000502 INF: FPGA: Recv ZSGSRD 35828
17-03-18 02:14:55.429 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:55.429 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:55.429 -07 000000455 INF: FPGA: Recv ZSGSRD 35821
17-03-18 02:14:55.439 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:55.439 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:55.439 -07 000000512 INF: FPGA: Recv ZSGSRD 35822
17-03-18 02:14:55.449 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:55.449 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:55.449 -07 000000576 INF: FPGA: Recv ZSGSRD 35820
17-03-18 02:14:55.459 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:55.459 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:55.459 -07 000000467 INF: FPGA: Recv ZSGSRD 35825
17-03-18 02:14:55.469 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:55.469 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:55.469 -07 000000569 INF: FPGA: Recv ZSGSRD 35818
17-03-18 02:14:55.479 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:55.479 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:14:55.479 -07 000000430 INF: FPGA: Recv ZPIEZORD 31678
17-03-18 02:14:55.489 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:55.489 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.681 V. Piezo Error = -9.1 V.
17-03-18 02:14:55.489 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35822 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35822 (-169.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35818 (-169.6 uncal um), Max = 35828 (-169.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:14:55.489 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35822, posNoise = 6, negNoise = 4
17-03-18 02:14:55.489 -07 000000610 INF: Z Motor: After move to -0.170428, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:14:55.489 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:14:55.489 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:14:55.489 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:14:55.489 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:14:55.489 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:14:55.489 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:14:55.489 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:14:55.499 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:14:55.499 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:14:55.499 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:14:55.499 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:14:55.499 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:14:55.499 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:14:55.499 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:14:55.499 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:14:55.499 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:14:55.499 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:14:55.509 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:14:55.509 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:14:55.509 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:14:55.509 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:14:55.509 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37407 150\n [Camera]
17-03-18 02:14:55.709 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:14:56.109 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:14:56.109 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:14:56.109 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:14:56.109 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:14:56.109 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:14:56.109 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:14:56.109 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:14:56.109 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:14:56.109 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:14:56.109 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:14:56.299 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37407 779
17-03-18 02:14:56.449 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:14:56.469 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:14:56.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:14:56.489 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 02:14:56.489 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 02:14:56.489 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:14:56.489 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:14:56.489 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:14:56.489 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:14:56.489 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:14:56.489 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:14:56.489 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:14:56.499 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:14:56.639 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:14:56.639 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:14:56.639 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:14:56.759 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:14:56.759 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:14:56.769 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:14:56.769 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:14:56.769 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:14:56.769 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:14:56.769 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:14:56.829 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:14:56.829 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:14:56.829 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37407 150' command took 2 ms to send, 1306 ms to get response, and 1317 ms overall
17-03-18 02:14:56.829 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:14:56.829 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.170451479353296. ------
17-03-18 02:14:56.839 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:14:56.839 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17654 mm
17-03-18 02:14:56.839 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:14:56.839 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38566, sync = True, waitForSettling = False)
17-03-18 02:14:56.839 -07 000000579 INF: Z Motor: Moving to -0.176544 mm, started at -0.170451 mm, distance = -6.09 um
17-03-18 02:14:56.839 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 02:14:56.839 -07 000000502 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-18 02:14:56.839 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:14:56.849 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:14:56.849 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:14:56.849 -07 000000606 INF: FPGA: Recv YRDPOS 129482
17-03-18 02:14:56.859 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:14:56.859 -07 000000579 INF: FPGA: Xmit ZDACW 38566\n [Z Motor]
17-03-18 02:14:56.859 -07 000000502 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:14:56.859 -07 000000502 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:14:56.859 -07 000000502 INF: Y Motor: Moving 1342 steps-19
17-03-18 02:14:56.859 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:14:56.869 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:14:56.869 -07 000000579 INF: FPGA: 'ZDACW 38566' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:14:56.879 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:14:56.889 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:14:56.889 -07 000000606 INF: FPGA: Recv ZDACR 38566
17-03-18 02:14:56.899 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:14:56.899 -07 000000579 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 02:14:57.069 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:14:57.069 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:14:57.149 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 02:14:57.149 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:14:57.149 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:14:57.149 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:14:57.159 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 02:14:57.159 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:14:57.159 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:14:57.159 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:14:57.159 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-18 02:14:57.159 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:14:57.249 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 02:14:57.249 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 02:14:57.299 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:14:57.299 -07 000000455 INF: FPGA: Recv YRDPOS 131187
17-03-18 02:14:57.309 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:14:57.309 -07 000000502 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:14:57.309 -07 000000502 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 02:14:57.309 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.839 mm, average velocity = 2.119 mm/sec
17-03-18 02:14:58.259 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:14:58.259 -07 000000462 INF: FPGA: Recv YRDPOS 131187
17-03-18 02:14:58.269 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:14:58.269 -07 000000502 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:14:58.289 -07 000000502 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:14:58.289 -07 000000502 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:14:58.289 -07 000000502 INF: Y Motor: Moved to 64.0562 after 1449 ms (table move)
17-03-18 02:14:58.299 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176544 mm (DAC = 38566)
17-03-18 02:14:58.299 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:58.299 -07 000000576 INF: FPGA: Recv ZSGSRD 36777
17-03-18 02:14:58.309 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:58.309 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:58.309 -07 000000462 INF: FPGA: Recv ZSGSRD 36775
17-03-18 02:14:58.319 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:58.319 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:58.319 -07 000000424 INF: FPGA: Recv ZSGSRD 36771
17-03-18 02:14:58.329 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:58.329 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:58.329 -07 000000444 INF: FPGA: Recv ZSGSRD 36775
17-03-18 02:14:58.339 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:58.339 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:58.339 -07 000000576 INF: FPGA: Recv ZSGSRD 36773
17-03-18 02:14:58.349 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:58.349 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:58.349 -07 000000430 INF: FPGA: Recv ZSGSRD 36771
17-03-18 02:14:58.359 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:58.359 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:58.359 -07 000000461 INF: FPGA: Recv ZSGSRD 36768
17-03-18 02:14:58.369 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:58.369 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:58.369 -07 000000455 INF: FPGA: Recv ZSGSRD 36771
17-03-18 02:14:58.379 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:58.379 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:58.379 -07 000000462 INF: FPGA: Recv ZSGSRD 36777
17-03-18 02:14:58.389 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:58.389 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:58.389 -07 000000502 INF: FPGA: Recv ZSGSRD 36769
17-03-18 02:14:58.399 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:58.399 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:14:58.399 -07 000000606 INF: FPGA: Recv ZPIEZORD 33008
17-03-18 02:14:58.409 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:58.409 -07 000000629 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.885 V. Piezo Error = -8.3 V.
17-03-18 02:14:58.409 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36773 (-175.7 uncal um), Error = 0.9 uncal um, Median = 36772 (-175.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36768 (-175.6 uncal um), Max = 36777 (-175.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:14:58.409 -07 000000629 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36773, posNoise = 4, negNoise = 5
17-03-18 02:14:58.409 -07 000000629 INF: Z Motor: After move to -0.176544, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:14:58.409 -07 000000629 INF: Z Motor: Settle wait time = 1454 ms, measure time = 110 ms (allowed 150 ms), total time = 1564 ms
17-03-18 02:14:58.409 -07 000000629 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:14:58.449 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-18 02:14:58.449 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:14:58.449 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:14:58.449 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:14:58.449 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:14:58.449 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:14:58.449 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:14:58.449 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:14:58.449 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:14:58.449 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:14:58.459 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:14:58.459 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:14:58.469 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 02:14:58.469 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 02:14:58.469 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:14:58.509 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:14:58.809 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:14:58.809 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:14:58.809 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:14:58.819 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) start.
17-03-18 02:14:58.849 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:14:58.849 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 02:14:58.849 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:14:58.939 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:14:58.939 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:14:58.939 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:14:58.949 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-18 02:14:59.059 -07 000000569 INF: Autofocus start
17-03-18 02:14:59.059 -07 000000569 INF: MeasureProfile start
17-03-18 02:14:59.059 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:14:59.069 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:14:59.069 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-18 02:14:59.069 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:14:59.089 -07 000000569 INF: MeasureProfile done
17-03-18 02:14:59.089 -07 000000569 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:14:59.089 -07 000000569 INF: Autofocus finished
17-03-18 02:14:59.269 -07 000000430 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:14:59.269 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 02:14:59.269 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.176560905100111. ----------
17-03-18 02:14:59.269 -07 000000610 INF: Cycle	97	Tile	6	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:14:59.279 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37081, sync = True, waitForSettling = True)
17-03-18 02:14:59.279 -07 000000610 INF: Z Motor: Moving to -0.169746 mm, started at -0.176561 mm, distance = 6.81 um
17-03-18 02:14:59.279 -07 000000610 INF: FPGA: Xmit ZDACW 37081\n [Z Motor]
17-03-18 02:14:59.279 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:14:59.289 -07 000000610 INF: FPGA: 'ZDACW 37081' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:14:59.289 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:14:59.289 -07 000000606 INF: FPGA: Recv ZDACR 37081
17-03-18 02:14:59.299 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:59.299 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:14:59.449 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:59.449 -07 000000424 INF: FPGA: Recv ZSGSRD 35715
17-03-18 02:14:59.459 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:14:59.459 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:59.459 -07 000000461 INF: FPGA: Recv ZSGSRD 35712
17-03-18 02:14:59.469 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:59.469 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:59.469 -07 000000455 INF: FPGA: Recv ZSGSRD 35716
17-03-18 02:14:59.479 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:59.479 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:59.479 -07 000000626 INF: FPGA: Recv ZSGSRD 35707
17-03-18 02:14:59.489 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:59.489 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:59.489 -07 000000606 INF: FPGA: Recv ZSGSRD 35708
17-03-18 02:14:59.499 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:59.499 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:59.499 -07 000000462 INF: FPGA: Recv ZSGSRD 35715
17-03-18 02:14:59.509 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:59.509 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:59.509 -07 000000467 INF: FPGA: Recv ZSGSRD 35718
17-03-18 02:14:59.519 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:59.519 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:59.519 -07 000000455 INF: FPGA: Recv ZSGSRD 35717
17-03-18 02:14:59.529 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:59.529 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:59.529 -07 000000591 INF: FPGA: Recv ZSGSRD 35709
17-03-18 02:14:59.539 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:14:59.549 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:14:59.549 -07 000000462 INF: FPGA: Recv ZSGSRD 35718
17-03-18 02:14:59.559 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:14:59.569 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:14:59.569 -07 000000569 INF: FPGA: Recv ZPIEZORD 31558
17-03-18 02:14:59.579 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:14:59.579 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.658 V. Piezo Error = -9.2 V.
17-03-18 02:14:59.579 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35714 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35715 (-168.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35707 (-168.8 uncal um), Max = 35718 (-168.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:14:59.579 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35714, posNoise = 4, negNoise = 7
17-03-18 02:14:59.579 -07 000000610 INF: Z Motor: After move to -0.169746, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:14:59.579 -07 000000610 INF: Z Motor: MoveAbsStepped took 299 ms)
17-03-18 02:14:59.579 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:14:59.579 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:14:59.579 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:14:59.579 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:14:59.579 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:14:59.579 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:14:59.579 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:14:59.579 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:14:59.579 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:14:59.579 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:14:59.579 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:14:59.579 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:14:59.589 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:14:59.589 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:14:59.589 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:14:59.589 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:14:59.589 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:14:59.589 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:14:59.599 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 02:14:59.599 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:14:59.609 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37257 150\n [Camera]
17-03-18 02:14:59.799 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:14:59.989 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 3.988112,
17-03-18 02:15:00.199 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:15:00.199 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:15:00.199 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:15:00.199 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:15:00.199 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:15:00.199 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:15:00.209 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:15:00.209 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 02:15:00.209 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:15:00.209 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:15:00.389 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37257 779
17-03-18 02:15:00.539 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:15:00.579 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:15:00.579 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 02:15:00.579 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:00.589 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:15:00.589 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:15:00.589 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 02:15:00.589 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:15:00.589 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:00.589 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:00.599 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:15:00.729 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:15:00.729 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:15:00.729 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:15:00.849 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:15:00.849 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:15:00.849 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:15:00.859 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:15:00.859 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:15:00.859 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:15:00.859 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:15:00.919 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:15:00.919 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:15:00.919 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37257 150' command took 2 ms to send, 1307 ms to get response, and 1320 ms overall
17-03-18 02:15:00.929 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:15:00.929 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.169757664441986. ------
17-03-18 02:15:00.929 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:15:00.929 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17609 mm
17-03-18 02:15:00.929 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:15:00.929 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 02:15:00.929 -07 000000502 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 02:15:00.929 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:15:00.929 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38466, sync = True, waitForSettling = False)
17-03-18 02:15:00.929 -07 000000561 INF: Z Motor: Moving to -0.176086 mm, started at -0.169758 mm, distance = -6.33 um
17-03-18 02:15:00.939 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:15:00.939 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:00.939 -07 000000430 INF: FPGA: Recv YRDPOS 131188
17-03-18 02:15:00.949 -07 000000561 INF: FPGA: Xmit ZDACW 38466\n [Z Motor]
17-03-18 02:15:00.949 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:15:00.949 -07 000000502 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:00.949 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:15:00.949 -07 000000502 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:15:00.949 -07 000000502 INF: Y Motor: Moving 1338 steps-13
17-03-18 02:15:00.959 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:15:00.959 -07 000000561 INF: FPGA: 'ZDACW 38466' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:15:00.969 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:15:00.979 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:15:00.979 -07 000000576 INF: FPGA: Recv ZDACR 38466
17-03-18 02:15:00.989 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:15:00.989 -07 000000561 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 02:15:01.159 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:15:01.159 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:15:01.249 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 02:15:01.249 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:15:01.249 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:01.249 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 02:15:01.249 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:15:01.249 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:01.259 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:01.259 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms.
17-03-18 02:15:01.259 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:01.259 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:15:01.339 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 02:15:01.339 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 02:15:01.389 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:01.389 -07 000000561 INF: FPGA: Recv YRDPOS 132871
17-03-18 02:15:01.399 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:15:01.399 -07 000000502 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:01.399 -07 000000502 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:15:01.399 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.836 mm, average velocity = 2.139 mm/sec
17-03-18 02:15:01.469 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:15:01.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:15:02.349 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:02.349 -07 000000629 INF: FPGA: Recv YRDPOS 132871
17-03-18 02:15:02.359 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:15:02.359 -07 000000502 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:02.379 -07 000000502 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:15:02.379 -07 000000502 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:15:02.379 -07 000000502 INF: Y Motor: Moved to 64.8784 after 1451 ms (table move)
17-03-18 02:15:02.389 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176086 mm (DAC = 38466)
17-03-18 02:15:02.389 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:02.389 -07 000000462 INF: FPGA: Recv ZSGSRD 36696
17-03-18 02:15:02.399 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:15:02.399 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:02.399 -07 000000444 INF: FPGA: Recv ZSGSRD 36700
17-03-18 02:15:02.409 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:02.409 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:02.409 -07 000000626 INF: FPGA: Recv ZSGSRD 36707
17-03-18 02:15:02.419 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:02.419 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:02.419 -07 000000606 INF: FPGA: Recv ZSGSRD 36705
17-03-18 02:15:02.429 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:02.429 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:02.429 -07 000000590 INF: FPGA: Recv ZSGSRD 36698
17-03-18 02:15:02.439 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:02.439 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:02.439 -07 000000430 INF: FPGA: Recv ZSGSRD 36703
17-03-18 02:15:02.449 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:02.449 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:02.449 -07 000000512 INF: FPGA: Recv ZSGSRD 36696
17-03-18 02:15:02.459 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:02.459 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:02.459 -07 000000606 INF: FPGA: Recv ZSGSRD 36696
17-03-18 02:15:02.469 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:02.469 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:02.469 -07 000000626 INF: FPGA: Recv ZSGSRD 36695
17-03-18 02:15:02.479 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:02.479 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:02.479 -07 000000629 INF: FPGA: Recv ZSGSRD 36701
17-03-18 02:15:02.489 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:02.489 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:15:02.489 -07 000000561 INF: FPGA: Recv ZPIEZORD 32856
17-03-18 02:15:02.499 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:02.499 -07 000000569 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.870 V. Piezo Error = -8.5 V.
17-03-18 02:15:02.499 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.1 um, Read 10 ADC samples: Avg = 36700 (-175.2 uncal um), Error = 0.9 uncal um, Median = 36699 (-175.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36695 (-175.2 uncal um), Max = 36707 (-175.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:15:02.499 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36700, posNoise = 7, negNoise = 5
17-03-18 02:15:02.499 -07 000000569 INF: Z Motor: After move to -0.176086, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:15:02.499 -07 000000569 INF: Z Motor: Settle wait time = 1453 ms, measure time = 110 ms (allowed 150 ms), total time = 1563 ms
17-03-18 02:15:02.499 -07 000000569 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:15:02.539 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-18 02:15:02.539 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:15:02.539 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:15:02.539 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:15:02.539 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:15:02.539 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:15:02.539 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:15:02.539 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:15:02.539 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:15:02.539 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:15:02.549 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:15:02.549 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:15:02.559 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 16 ms.
17-03-18 02:15:02.559 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 20 ms.
17-03-18 02:15:02.569 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:15:02.609 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:15:02.909 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:15:02.909 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:15:02.909 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:15:02.909 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1163922192, 0x0, 559484976) start.
17-03-18 02:15:02.949 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:15:02.949 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 02:15:02.949 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 02:15:03.029 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1163922192, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:15:03.029 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:03.029 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:15:03.029 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:15:03.049 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:15:03.049 -07 000000591 INF: Autofocus start
17-03-18 02:15:03.049 -07 000000591 INF: MeasureProfile start
17-03-18 02:15:03.059 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:15:03.059 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-18 02:15:03.059 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:15:03.069 -07 000000591 INF: MeasureProfile done
17-03-18 02:15:03.069 -07 000000591 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:15:03.069 -07 000000591 INF: Autofocus finished
17-03-18 02:15:03.259 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:15:03.259 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 203 ms overall
17-03-18 02:15:03.269 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.176091937613762. ----------
17-03-18 02:15:03.269 -07 000000610 INF: Cycle	97	Tile	7	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:15:03.269 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36981, sync = True, waitForSettling = True)
17-03-18 02:15:03.269 -07 000000610 INF: Z Motor: Moving to -0.169288 mm, started at -0.176092 mm, distance = 6.80 um
17-03-18 02:15:03.269 -07 000000610 INF: FPGA: Xmit ZDACW 36981\n [Z Motor]
17-03-18 02:15:03.269 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:15:03.279 -07 000000610 INF: FPGA: 'ZDACW 36981' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:15:03.279 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:15:03.279 -07 000000579 INF: FPGA: Recv ZDACR 36981
17-03-18 02:15:03.289 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:03.289 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:15:03.439 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:03.439 -07 000000455 INF: FPGA: Recv ZSGSRD 35645
17-03-18 02:15:03.449 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:15:03.449 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:03.449 -07 000000512 INF: FPGA: Recv ZSGSRD 35648
17-03-18 02:15:03.459 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:03.459 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:03.459 -07 000000590 INF: FPGA: Recv ZSGSRD 35643
17-03-18 02:15:03.469 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:03.469 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:03.469 -07 000000424 INF: FPGA: Recv ZSGSRD 35641
17-03-18 02:15:03.479 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:03.479 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:03.479 -07 000000579 INF: FPGA: Recv ZSGSRD 35644
17-03-18 02:15:03.489 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:03.489 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:03.489 -07 000000561 INF: FPGA: Recv ZSGSRD 35640
17-03-18 02:15:03.499 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:03.499 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:03.499 -07 000000512 INF: FPGA: Recv ZSGSRD 35649
17-03-18 02:15:03.509 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:03.509 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:03.509 -07 000000424 INF: FPGA: Recv ZSGSRD 35642
17-03-18 02:15:03.519 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:15:03.519 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:03.519 -07 000000461 INF: FPGA: Recv ZSGSRD 35641
17-03-18 02:15:03.529 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:03.529 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:03.529 -07 000000561 INF: FPGA: Recv ZSGSRD 35640
17-03-18 02:15:03.539 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:03.539 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:15:03.539 -07 000000626 INF: FPGA: Recv ZPIEZORD 31450
17-03-18 02:15:03.549 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:03.549 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.643 V. Piezo Error = -9.2 V.
17-03-18 02:15:03.549 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35643 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35642 (-168.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35640 (-168.4 uncal um), Max = 35649 (-168.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:15:03.549 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35643, posNoise = 6, negNoise = 3
17-03-18 02:15:03.549 -07 000000610 INF: Z Motor: After move to -0.169288, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:15:03.549 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 02:15:03.549 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:15:03.549 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:15:03.549 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:15:03.549 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:15:03.549 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:15:03.549 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:15:03.549 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:15:03.549 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:15:03.549 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:15:03.549 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:15:03.549 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:15:03.549 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:15:03.549 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:15:03.549 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:15:03.559 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:15:03.559 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:15:03.559 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:15:03.559 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:15:03.559 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:15:03.559 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:15:03.569 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37158 150\n [Camera]
17-03-18 02:15:03.769 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:15:04.159 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:15:04.159 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:15:04.159 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:15:04.159 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:15:04.159 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:15:04.169 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:15:04.169 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:15:04.169 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:15:04.169 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:15:04.169 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:15:04.349 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37158 779
17-03-18 02:15:04.499 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:15:04.539 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 02:15:04.539 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 02:15:04.539 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:04.539 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:15:04.539 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 02:15:04.539 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 02:15:04.539 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:04.549 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:15:04.549 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:04.549 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:15:04.689 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:15:04.689 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:15:04.699 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:15:04.809 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:15:04.809 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:15:04.809 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:15:04.809 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:15:04.809 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:15:04.809 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:15:04.809 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:15:04.889 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:15:04.889 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:15:04.889 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37158 150' command took 2 ms to send, 1312 ms to get response, and 1319 ms overall
17-03-18 02:15:04.889 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:15:04.889 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.169301545379921. ------
17-03-18 02:15:04.889 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:15:04.889 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17585 mm
17-03-18 02:15:04.889 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:15:04.899 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 02:15:04.899 -07 000000502 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 02:15:04.899 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:04.899 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 38414, sync = True, waitForSettling = False)
17-03-18 02:15:04.899 -07 000000629 INF: Z Motor: Moving to -0.175848 mm, started at -0.169302 mm, distance = -6.55 um
17-03-18 02:15:04.899 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:15:04.899 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:15:04.899 -07 000000430 INF: FPGA: Recv YRDPOS 132871
17-03-18 02:15:04.909 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:04.909 -07 000000502 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:04.909 -07 000000502 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:15:04.909 -07 000000502 INF: Y Motor: Moving 1351 steps-29
17-03-18 02:15:04.909 -07 000000629 INF: FPGA: Xmit ZDACW 38414\n [Z Motor]
17-03-18 02:15:04.909 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:15:04.919 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:15:04.919 -07 000000629 INF: FPGA: 'ZDACW 38414' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:15:04.929 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:15:04.949 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:15:04.949 -07 000000444 INF: FPGA: Recv ZDACR 38414
17-03-18 02:15:04.959 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 02:15:04.959 -07 000000629 INF: Z Motor: MoveAbsStepped took 59 ms (did NOT wait for settling yet))
17-03-18 02:15:05.119 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:15:05.119 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 02:15:05.199 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 02:15:05.199 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:15:05.199 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:05.199 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 02:15:05.199 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:15:05.199 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:05.209 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:05.209 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:05.209 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-18 02:15:05.209 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 02:15:05.299 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 02:15:05.299 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:15:05.349 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 4.000345,
17-03-18 02:15:05.359 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:05.359 -07 000000590 INF: FPGA: Recv YRDPOS 134581
17-03-18 02:15:05.369 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:15:05.369 -07 000000502 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:05.369 -07 000000502 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:15:05.369 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-18 02:15:06.319 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:06.319 -07 000000569 INF: FPGA: Recv YRDPOS 134581
17-03-18 02:15:06.329 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:15:06.329 -07 000000502 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:06.359 -07 000000502 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:15:06.359 -07 000000502 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:15:06.359 -07 000000502 INF: Y Motor: Moved to 65.7134 after 1463 ms (table move)
17-03-18 02:15:06.359 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175848 mm (DAC = 38414)
17-03-18 02:15:06.359 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:06.369 -07 000000444 INF: FPGA: Recv ZSGSRD 36661
17-03-18 02:15:06.369 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 02:15:06.369 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:06.369 -07 000000629 INF: FPGA: Recv ZSGSRD 36666
17-03-18 02:15:06.379 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:15:06.379 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:06.379 -07 000000461 INF: FPGA: Recv ZSGSRD 36661
17-03-18 02:15:06.389 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:06.389 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:06.389 -07 000000626 INF: FPGA: Recv ZSGSRD 36660
17-03-18 02:15:06.399 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:06.399 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:06.399 -07 000000462 INF: FPGA: Recv ZSGSRD 36656
17-03-18 02:15:06.409 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:06.409 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:06.409 -07 000000629 INF: FPGA: Recv ZSGSRD 36657
17-03-18 02:15:06.419 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:06.419 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:06.419 -07 000000430 INF: FPGA: Recv ZSGSRD 36663
17-03-18 02:15:06.429 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:06.429 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:06.429 -07 000000455 INF: FPGA: Recv ZSGSRD 36667
17-03-18 02:15:06.439 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:06.439 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:06.439 -07 000000561 INF: FPGA: Recv ZSGSRD 36658
17-03-18 02:15:06.449 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:06.449 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:06.449 -07 000000606 INF: FPGA: Recv ZSGSRD 36662
17-03-18 02:15:06.459 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:06.459 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:15:06.459 -07 000000430 INF: FPGA: Recv ZPIEZORD 32817
17-03-18 02:15:06.469 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:06.469 -07 000000591 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.862 V. Piezo Error = -8.5 V.
17-03-18 02:15:06.469 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36661 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36661 (-175.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36656 (-174.9 uncal um), Max = 36667 (-175.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:15:06.469 -07 000000591 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36661, posNoise = 6, negNoise = 5
17-03-18 02:15:06.469 -07 000000591 INF: Z Motor: After move to -0.175848, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:15:06.469 -07 000000591 INF: Z Motor: Settle wait time = 1467 ms, measure time = 103 ms (allowed 150 ms), total time = 1570 ms
17-03-18 02:15:06.469 -07 000000591 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 02:15:06.469 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:15:06.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:15:06.519 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 02:15:06.519 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:15:06.519 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:15:06.519 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:15:06.519 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:15:06.519 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:15:06.519 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:15:06.519 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:15:06.519 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:15:06.519 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:15:06.529 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:15:06.529 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:15:06.539 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:15:06.539 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:15:06.539 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:15:06.589 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:15:06.889 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:15:06.889 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:15:06.889 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:15:06.889 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 02:15:06.929 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:15:06.929 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 02:15:06.929 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 02:15:07.019 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:15:07.019 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:07.019 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:15:07.019 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:15:07.029 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:15:07.029 -07 000000462 INF: Autofocus start
17-03-18 02:15:07.029 -07 000000462 INF: MeasureProfile start
17-03-18 02:15:07.029 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:15:07.039 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:15:07.039 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:15:07.039 -07 000000462 INF: MeasureProfile done
17-03-18 02:15:07.039 -07 000000462 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:15:07.039 -07 000000462 INF: Autofocus finished
17-03-18 02:15:07.239 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:15:07.239 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 02:15:07.239 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.175841393340233. ----------
17-03-18 02:15:07.249 -07 000000610 INF: Cycle	97	Tile	8	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:15:07.249 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36929, sync = True, waitForSettling = True)
17-03-18 02:15:07.249 -07 000000610 INF: Z Motor: Moving to -0.169050 mm, started at -0.175841 mm, distance = 6.79 um
17-03-18 02:15:07.249 -07 000000610 INF: FPGA: Xmit ZDACW 36929\n [Z Motor]
17-03-18 02:15:07.249 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:15:07.259 -07 000000610 INF: FPGA: 'ZDACW 36929' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:15:07.259 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:15:07.259 -07 000000606 INF: FPGA: Recv ZDACR 36929
17-03-18 02:15:07.269 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:07.269 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:15:07.419 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:07.419 -07 000000502 INF: FPGA: Recv ZSGSRD 35608
17-03-18 02:15:07.429 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:15:07.429 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:07.429 -07 000000626 INF: FPGA: Recv ZSGSRD 35608
17-03-18 02:15:07.439 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:07.439 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:07.439 -07 000000606 INF: FPGA: Recv ZSGSRD 35604
17-03-18 02:15:07.449 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:07.449 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:07.449 -07 000000444 INF: FPGA: Recv ZSGSRD 35596
17-03-18 02:15:07.459 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:07.459 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:07.459 -07 000000629 INF: FPGA: Recv ZSGSRD 35603
17-03-18 02:15:07.469 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:07.469 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:07.469 -07 000000502 INF: FPGA: Recv ZSGSRD 35604
17-03-18 02:15:07.479 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:07.479 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:07.479 -07 000000626 INF: FPGA: Recv ZSGSRD 35603
17-03-18 02:15:07.489 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:07.489 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:07.489 -07 000000461 INF: FPGA: Recv ZSGSRD 35607
17-03-18 02:15:07.499 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:07.499 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:07.499 -07 000000569 INF: FPGA: Recv ZSGSRD 35600
17-03-18 02:15:07.509 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:07.509 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:07.509 -07 000000579 INF: FPGA: Recv ZSGSRD 35603
17-03-18 02:15:07.519 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:07.519 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:15:07.519 -07 000000590 INF: FPGA: Recv ZPIEZORD 31402
17-03-18 02:15:07.529 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:07.529 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.635 V. Piezo Error = -9.3 V.
17-03-18 02:15:07.529 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35604 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35604 (-168.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35596 (-168.1 uncal um), Max = 35608 (-168.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:15:07.529 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35604, posNoise = 4, negNoise = 8
17-03-18 02:15:07.529 -07 000000610 INF: Z Motor: After move to -0.169050, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:15:07.529 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:15:07.529 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:15:07.529 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:15:07.529 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:15:07.529 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:15:07.529 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:15:07.529 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:15:07.529 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:15:07.529 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:15:07.529 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:15:07.529 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:15:07.529 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:15:07.529 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:15:07.539 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:15:07.539 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:15:07.539 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:15:07.539 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:15:07.549 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:15:07.549 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:15:07.549 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:15:07.549 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:15:07.549 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37106 150\n [Camera]
17-03-18 02:15:07.749 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:15:08.139 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:15:08.139 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:15:08.139 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:15:08.139 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:15:08.139 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:15:08.149 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:15:08.149 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:15:08.149 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:15:08.149 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:15:08.149 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:15:08.329 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37106 779
17-03-18 02:15:08.489 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:15:08.529 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 02:15:08.529 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:15:08.529 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:08.529 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 02:15:08.529 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 02:15:08.529 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:08.529 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:08.529 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:15:08.529 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:08.539 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:15:08.669 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:15:08.669 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:15:08.669 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:15:08.789 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:15:08.789 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:15:08.789 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:15:08.799 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:15:08.799 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:15:08.799 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:15:08.799 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:15:08.869 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:15:08.869 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:15:08.869 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37106 150' command took 2 ms to send, 1310 ms to get response, and 1317 ms overall
17-03-18 02:15:08.869 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:15:08.869 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.169051001106392. ------
17-03-18 02:15:08.869 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:15:08.869 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17559 mm
17-03-18 02:15:08.869 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:15:08.869 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 02:15:08.869 -07 000000626 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 02:15:08.869 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38357, sync = True, waitForSettling = False)
17-03-18 02:15:08.869 -07 000000579 INF: Z Motor: Moving to -0.175587 mm, started at -0.169051 mm, distance = -6.54 um
17-03-18 02:15:08.869 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:15:08.879 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:15:08.879 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:08.879 -07 000000629 INF: FPGA: Recv YRDPOS 134581
17-03-18 02:15:08.889 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:15:08.889 -07 000000626 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:08.889 -07 000000626 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:15:08.889 -07 000000626 INF: Y Motor: Moving 1343 steps-19
17-03-18 02:15:08.889 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:15:08.899 -07 000000579 INF: FPGA: Xmit ZDACW 38357\n [Z Motor]
17-03-18 02:15:08.899 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:15:08.909 -07 000000579 INF: FPGA: 'ZDACW 38357' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 02:15:08.909 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:15:08.919 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:15:08.919 -07 000000455 INF: FPGA: Recv ZDACR 38357
17-03-18 02:15:08.929 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:15:08.929 -07 000000579 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 02:15:09.089 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:15:09.089 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 215 ms overall
17-03-18 02:15:09.179 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 02:15:09.179 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 02:15:09.179 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:09.179 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 02:15:09.179 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:15:09.179 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:09.189 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:09.189 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:09.189 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-18 02:15:09.189 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:15:09.289 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 02:15:09.289 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 398 ms overall
17-03-18 02:15:09.329 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:09.329 -07 000000467 INF: FPGA: Recv YRDPOS 136270
17-03-18 02:15:09.339 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:15:09.339 -07 000000626 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:09.339 -07 000000626 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 02:15:09.339 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.839 mm, average velocity = 2.093 mm/sec
17-03-18 02:15:10.289 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:10.289 -07 000000461 INF: FPGA: Recv YRDPOS 136270
17-03-18 02:15:10.299 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:15:10.299 -07 000000626 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:10.329 -07 000000626 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:15:10.329 -07 000000626 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:15:10.329 -07 000000626 INF: Y Motor: Moved to 66.5381 after 1450 ms (table move)
17-03-18 02:15:10.329 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175587 mm (DAC = 38357)
17-03-18 02:15:10.349 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:10.349 -07 000000512 INF: FPGA: Recv ZSGSRD 36623
17-03-18 02:15:10.359 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:15:10.369 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:10.369 -07 000000461 INF: FPGA: Recv ZSGSRD 36618
17-03-18 02:15:10.379 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 02:15:10.379 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:10.379 -07 000000455 INF: FPGA: Recv ZSGSRD 36617
17-03-18 02:15:10.389 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:10.389 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:10.389 -07 000000629 INF: FPGA: Recv ZSGSRD 36620
17-03-18 02:15:10.399 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:10.409 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:10.409 -07 000000424 INF: FPGA: Recv ZSGSRD 36630
17-03-18 02:15:10.419 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:15:10.419 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:10.419 -07 000000461 INF: FPGA: Recv ZSGSRD 36622
17-03-18 02:15:10.429 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:10.429 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:10.429 -07 000000626 INF: FPGA: Recv ZSGSRD 36630
17-03-18 02:15:10.439 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:10.439 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:10.439 -07 000000430 INF: FPGA: Recv ZSGSRD 36617
17-03-18 02:15:10.449 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:10.449 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:10.449 -07 000000561 INF: FPGA: Recv ZSGSRD 36619
17-03-18 02:15:10.459 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:10.459 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:10.459 -07 000000502 INF: FPGA: Recv ZSGSRD 36625
17-03-18 02:15:10.469 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:10.469 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:15:10.469 -07 000000462 INF: FPGA: Recv ZPIEZORD 32776
17-03-18 02:15:10.479 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:10.479 -07 000000606 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.853 V. Piezo Error = -8.5 V.
17-03-18 02:15:10.479 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.6 um, Read 10 ADC samples: Avg = 36622 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36621 (-174.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36617 (-174.7 uncal um), Max = 36630 (-174.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:15:10.479 -07 000000606 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36622, posNoise = 8, negNoise = 5
17-03-18 02:15:10.479 -07 000000606 INF: Z Motor: After move to -0.175587, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:15:10.479 -07 000000606 INF: Z Motor: Settle wait time = 1454 ms, measure time = 148 ms (allowed 150 ms), total time = 1602 ms
17-03-18 02:15:10.479 -07 000000606 INF: Z Motor: Waiting extra 2 ms after reading position to reach expected total of 150 ms
17-03-18 02:15:10.489 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 02:15:10.489 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:15:10.489 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:15:10.489 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:15:10.489 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:15:10.489 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:15:10.489 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:15:10.489 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:15:10.489 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:15:10.489 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:15:10.489 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:15:10.499 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:15:10.509 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:15:10.509 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:15:10.509 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:15:10.559 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:15:10.719 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 4.011254,
17-03-18 02:15:10.859 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:15:10.859 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:15:10.859 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:15:10.859 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 02:15:10.889 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:15:10.899 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 02:15:10.899 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:15:10.979 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:15:10.979 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:10.989 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:15:10.989 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:15:10.999 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:15:10.999 -07 000000561 INF: Autofocus start
17-03-18 02:15:10.999 -07 000000561 INF: MeasureProfile start
17-03-18 02:15:10.999 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:15:11.009 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:15:11.009 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:15:11.009 -07 000000561 INF: MeasureProfile done
17-03-18 02:15:11.009 -07 000000561 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:15:11.009 -07 000000561 INF: Autofocus finished
17-03-18 02:15:11.209 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:15:11.209 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 02:15:11.209 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.175590849066705. ----------
17-03-18 02:15:11.209 -07 000000610 INF: Cycle	97	Tile	9	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:15:11.219 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36854, sync = True, waitForSettling = True)
17-03-18 02:15:11.219 -07 000000610 INF: Z Motor: Moving to -0.168707 mm, started at -0.175591 mm, distance = 6.88 um
17-03-18 02:15:11.219 -07 000000610 INF: FPGA: Xmit ZDACW 36854\n [Z Motor]
17-03-18 02:15:11.219 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:15:11.229 -07 000000610 INF: FPGA: 'ZDACW 36854' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:15:11.229 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:15:11.229 -07 000000576 INF: FPGA: Recv ZDACR 36854
17-03-18 02:15:11.239 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:11.239 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:15:11.389 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:11.389 -07 000000461 INF: FPGA: Recv ZSGSRD 35555
17-03-18 02:15:11.399 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:15:11.399 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:11.399 -07 000000455 INF: FPGA: Recv ZSGSRD 35553
17-03-18 02:15:11.409 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:11.409 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:11.409 -07 000000430 INF: FPGA: Recv ZSGSRD 35548
17-03-18 02:15:11.419 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:11.419 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:11.419 -07 000000606 INF: FPGA: Recv ZSGSRD 35554
17-03-18 02:15:11.429 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:11.429 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:11.429 -07 000000626 INF: FPGA: Recv ZSGSRD 35559
17-03-18 02:15:11.439 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:11.439 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:11.439 -07 000000461 INF: FPGA: Recv ZSGSRD 35547
17-03-18 02:15:11.449 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:11.449 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:11.449 -07 000000467 INF: FPGA: Recv ZSGSRD 35553
17-03-18 02:15:11.459 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:11.459 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:11.459 -07 000000430 INF: FPGA: Recv ZSGSRD 35556
17-03-18 02:15:11.469 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:11.469 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:11.469 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:15:11.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:15:11.469 -07 000000455 INF: FPGA: Recv ZSGSRD 35544
17-03-18 02:15:11.479 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:11.479 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:11.479 -07 000000430 INF: FPGA: Recv ZSGSRD 35554
17-03-18 02:15:11.489 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:11.489 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:15:11.489 -07 000000606 INF: FPGA: Recv ZPIEZORD 31341
17-03-18 02:15:11.499 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:11.499 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.624 V. Piezo Error = -9.3 V.
17-03-18 02:15:11.499 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35552 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35554 (-167.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35544 (-167.8 uncal um), Max = 35559 (-167.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:15:11.499 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35552, posNoise = 7, negNoise = 8
17-03-18 02:15:11.499 -07 000000610 INF: Z Motor: After move to -0.168707, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:15:11.499 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:15:11.499 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:15:11.499 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:15:11.499 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:15:11.499 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:15:11.499 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:15:11.499 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:15:11.499 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:15:11.499 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:15:11.499 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:15:11.499 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:15:11.499 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:15:11.499 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:15:11.499 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:15:11.509 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:15:11.509 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:15:11.509 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:15:11.519 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:15:11.519 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:15:11.519 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:15:11.519 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:15:11.519 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37030 150\n [Camera]
17-03-18 02:15:11.719 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:15:12.109 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:15:12.109 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:15:12.109 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:15:12.109 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:15:12.109 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:15:12.109 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:15:12.109 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:15:12.119 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:15:12.119 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:15:12.119 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:15:12.299 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37030 779
17-03-18 02:15:12.449 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:15:12.499 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 02:15:12.499 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:15:12.499 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:12.499 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 02:15:12.499 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:15:12.499 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:12.499 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:12.499 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:15:12.509 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:15:12.509 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:15:12.639 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:15:12.639 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:15:12.649 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:15:12.649 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:15:12.649 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:15:12.789 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:15:12.799 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:15:12.799 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:15:12.799 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:15:12.799 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:15:12.829 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:15:12.839 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:15:12.839 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37030 150' command took 2 ms to send, 1310 ms to get response, and 1317 ms overall
17-03-18 02:15:12.839 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:15:12.839 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5380859375, Z-Position -0.168716942075021. ------
17-03-18 02:15:12.839 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:15:12.839 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17551 mm
17-03-18 02:15:12.839 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:15:12.839 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:15:12.839 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 38339, sync = True, waitForSettling = False)
17-03-18 02:15:12.839 -07 000000590 INF: Z Motor: Moving to -0.175505 mm, started at -0.168717 mm, distance = -6.79 um
17-03-18 02:15:12.839 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 02:15:12.839 -07 000000444 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-18 02:15:12.849 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:15:12.849 -07 000000590 INF: FPGA: Xmit ZDACW 38339\n [Z Motor]
17-03-18 02:15:12.849 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:15:12.859 -07 000000590 INF: FPGA: 'ZDACW 38339' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:15:12.859 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:12.859 -07 000000512 INF: FPGA: Recv YRDPOS 136271
17-03-18 02:15:12.869 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:15:12.869 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 02:15:12.869 -07 000000444 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:12.869 -07 000000444 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:15:12.869 -07 000000444 INF: Y Motor: Moving 1350 steps-30
17-03-18 02:15:12.879 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:15:12.879 -07 000000462 INF: FPGA: Recv ZDACR 38339
17-03-18 02:15:12.889 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:15:12.889 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:15:12.889 -07 000000590 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 02:15:13.069 -07 000000430 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:15:13.069 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:15:13.169 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 02:15:13.169 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:15:13.169 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:13.169 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:15:13.179 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 02:15:13.179 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:15:13.179 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:13.179 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:15:13.179 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 532 ms.
17-03-18 02:15:13.179 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 533 ms.
17-03-18 02:15:13.259 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 02:15:13.259 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 02:15:13.309 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:13.309 -07 000000424 INF: FPGA: Recv YRDPOS 137976
17-03-18 02:15:13.319 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:15:13.319 -07 000000444 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:13.319 -07 000000444 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 02:15:13.319 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.845 mm, average velocity = 2.160 mm/sec
17-03-18 02:15:14.269 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:14.269 -07 000000455 INF: FPGA: Recv YRDPOS 137976
17-03-18 02:15:14.279 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:15:14.279 -07 000000444 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:14.299 -07 000000444 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:15:14.299 -07 000000444 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:15:14.299 -07 000000444 INF: Y Motor: Moved to 67.3711 after 1458 ms (table move)
17-03-18 02:15:14.309 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175505 mm (DAC = 38339)
17-03-18 02:15:14.309 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:14.309 -07 000000430 INF: FPGA: Recv ZSGSRD 36609
17-03-18 02:15:14.319 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:14.319 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:14.319 -07 000000455 INF: FPGA: Recv ZSGSRD 36615
17-03-18 02:15:14.329 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:14.329 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:14.329 -07 000000606 INF: FPGA: Recv ZSGSRD 36613
17-03-18 02:15:14.339 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:14.339 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:14.339 -07 000000502 INF: FPGA: Recv ZSGSRD 36605
17-03-18 02:15:14.349 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:14.349 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:14.349 -07 000000462 INF: FPGA: Recv ZSGSRD 36609
17-03-18 02:15:14.359 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:14.359 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:14.359 -07 000000590 INF: FPGA: Recv ZSGSRD 36606
17-03-18 02:15:14.369 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:14.369 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:14.369 -07 000000444 INF: FPGA: Recv ZSGSRD 36608
17-03-18 02:15:14.379 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:14.379 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:14.379 -07 000000502 INF: FPGA: Recv ZSGSRD 36608
17-03-18 02:15:14.389 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:14.389 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:14.389 -07 000000461 INF: FPGA: Recv ZSGSRD 36614
17-03-18 02:15:14.399 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:14.399 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:14.399 -07 000000455 INF: FPGA: Recv ZSGSRD 36610
17-03-18 02:15:14.409 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:14.409 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:15:14.409 -07 000000629 INF: FPGA: Recv ZPIEZORD 32767
17-03-18 02:15:14.419 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:14.419 -07 000000561 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.850 V. Piezo Error = -8.5 V.
17-03-18 02:15:14.419 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36610 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36609 (-174.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36605 (-174.6 uncal um), Max = 36615 (-174.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:15:14.419 -07 000000561 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36610, posNoise = 5, negNoise = 5
17-03-18 02:15:14.419 -07 000000561 INF: Z Motor: After move to -0.175505, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:15:14.419 -07 000000561 INF: Z Motor: Settle wait time = 1461 ms, measure time = 110 ms (allowed 150 ms), total time = 1571 ms
17-03-18 02:15:14.419 -07 000000561 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:15:14.459 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 02:15:14.459 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:15:14.459 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:15:14.459 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:15:14.459 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:15:14.459 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:15:14.459 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:15:14.459 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:15:14.459 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:15:14.459 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:15:14.469 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:15:14.469 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:15:14.479 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:15:14.479 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:15:14.479 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:15:14.529 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:15:14.829 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:15:14.829 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:15:14.829 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:15:14.829 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 02:15:14.869 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:15:14.869 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 02:15:14.869 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 384 ms to get response, and 388 ms overall
17-03-18 02:15:14.959 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:15:14.959 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:14.959 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:15:14.959 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 02:15:14.969 -07 000000424 INF: Autofocus start
17-03-18 02:15:14.969 -07 000000424 INF: MeasureProfile start
17-03-18 02:15:14.969 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:15:14.969 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:15:14.979 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:15:14.979 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:15:14.979 -07 000000424 INF: MeasureProfile done
17-03-18 02:15:14.979 -07 000000424 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:15:14.979 -07 000000424 INF: Autofocus finished
17-03-18 02:15:15.179 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:15:15.179 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:15:15.179 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.175513758521004. ----------
17-03-18 02:15:15.179 -07 000000610 INF: Cycle	97	Tile	10	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:15:15.189 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36872, sync = True, waitForSettling = True)
17-03-18 02:15:15.189 -07 000000610 INF: Z Motor: Moving to -0.168789 mm, started at -0.175514 mm, distance = 6.72 um
17-03-18 02:15:15.189 -07 000000610 INF: FPGA: Xmit ZDACW 36872\n [Z Motor]
17-03-18 02:15:15.189 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:15:15.199 -07 000000610 INF: FPGA: 'ZDACW 36872' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:15:15.199 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:15:15.199 -07 000000606 INF: FPGA: Recv ZDACR 36872
17-03-18 02:15:15.209 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:15.209 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:15:15.359 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:15.359 -07 000000502 INF: FPGA: Recv ZSGSRD 35567
17-03-18 02:15:15.369 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:15:15.379 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:15.379 -07 000000606 INF: FPGA: Recv ZSGSRD 35565
17-03-18 02:15:15.389 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:15:15.389 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:15.389 -07 000000591 INF: FPGA: Recv ZSGSRD 35563
17-03-18 02:15:15.399 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:15.399 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:15.399 -07 000000626 INF: FPGA: Recv ZSGSRD 35567
17-03-18 02:15:15.409 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:15.409 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:15.409 -07 000000467 INF: FPGA: Recv ZSGSRD 35562
17-03-18 02:15:15.419 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:15.419 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:15.419 -07 000000512 INF: FPGA: Recv ZSGSRD 35566
17-03-18 02:15:15.429 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:15.429 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:15.429 -07 000000576 INF: FPGA: Recv ZSGSRD 35567
17-03-18 02:15:15.439 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:15.439 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:15.439 -07 000000579 INF: FPGA: Recv ZSGSRD 35563
17-03-18 02:15:15.449 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:15.449 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:15.449 -07 000000626 INF: FPGA: Recv ZSGSRD 35561
17-03-18 02:15:15.459 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:15.459 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:15.459 -07 000000461 INF: FPGA: Recv ZSGSRD 35559
17-03-18 02:15:15.469 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:15.469 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:15:15.469 -07 000000430 INF: FPGA: Recv ZPIEZORD 31346
17-03-18 02:15:15.479 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:15.479 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.626 V. Piezo Error = -9.3 V.
17-03-18 02:15:15.479 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35564 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35564 (-167.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35559 (-167.9 uncal um), Max = 35567 (-167.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:15:15.479 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35564, posNoise = 3, negNoise = 5
17-03-18 02:15:15.479 -07 000000610 INF: Z Motor: After move to -0.168789, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:15:15.479 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 02:15:15.479 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:15:15.479 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:15:15.479 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:15:15.479 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:15:15.479 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:15:15.479 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:15:15.479 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:15:15.479 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:15:15.479 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:15:15.479 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:15:15.479 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:15:15.479 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:15:15.489 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:15:15.489 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:15:15.489 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:15:15.489 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:15:15.499 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:15:15.499 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:15:15.499 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:15:15.499 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:15:15.499 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 37049 150\n [Camera]
17-03-18 02:15:15.699 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:15:16.079 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 4.016692,
17-03-18 02:15:16.089 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:15:16.089 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:15:16.089 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:15:16.089 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:15:16.089 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:15:16.099 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:15:16.099 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:15:16.099 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:15:16.099 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:15:16.099 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:15:16.289 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37049 779
17-03-18 02:15:16.429 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:15:16.469 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:15:16.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:15:16.469 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 02:15:16.469 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 02:15:16.469 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:16.479 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:15:16.479 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 02:15:16.479 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:15:16.479 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:16.479 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:15:16.479 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:15:16.489 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:15:16.619 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:15:16.619 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:15:16.629 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:15:16.759 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:15:16.759 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:15:16.759 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:15:16.759 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:15:16.759 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:15:16.769 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:15:16.769 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:15:16.819 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:15:16.819 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:15:16.819 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 37049 150' command took 2 ms to send, 1311 ms to get response, and 1317 ms overall
17-03-18 02:15:16.819 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:15:16.819 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.168794032620722. ------
17-03-18 02:15:16.819 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:15:16.819 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17499 mm
17-03-18 02:15:16.819 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:15:16.819 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:15:16.819 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 02:15:16.829 -07 000000502 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 02:15:16.829 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:16.829 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:15:16.829 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 38226, sync = True, waitForSettling = False)
17-03-18 02:15:16.829 -07 000000590 INF: Z Motor: Moving to -0.174987 mm, started at -0.168794 mm, distance = -6.19 um
17-03-18 02:15:16.829 -07 000000430 INF: FPGA: Recv YRDPOS 137977
17-03-18 02:15:16.839 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:15:16.839 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:16.839 -07 000000502 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:16.839 -07 000000502 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:15:16.839 -07 000000502 INF: Y Motor: Moving 1346 steps-24
17-03-18 02:15:16.849 -07 000000590 INF: FPGA: Xmit ZDACW 38226\n [Z Motor]
17-03-18 02:15:16.849 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:15:16.859 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:15:16.859 -07 000000590 INF: FPGA: 'ZDACW 38226' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:15:16.869 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:15:16.869 -07 000000462 INF: FPGA: Recv ZDACR 38226
17-03-18 02:15:16.879 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:15:16.879 -07 000000590 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 02:15:17.039 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:15:17.039 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 215 ms overall
17-03-18 02:15:17.139 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 02:15:17.139 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 02:15:17.139 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:17.139 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:15:17.139 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 02:15:17.139 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:17.149 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:15:17.149 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-18 02:15:17.149 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:17.149 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:15:17.229 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 02:15:17.229 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 02:15:17.279 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:17.279 -07 000000606 INF: FPGA: Recv YRDPOS 139683
17-03-18 02:15:17.289 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:15:17.289 -07 000000502 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:17.289 -07 000000502 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 02:15:17.289 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.842 mm, average velocity = 2.147 mm/sec
17-03-18 02:15:18.239 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:18.239 -07 000000576 INF: FPGA: Recv YRDPOS 139683
17-03-18 02:15:18.249 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:15:18.249 -07 000000502 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:18.269 -07 000000502 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:15:18.269 -07 000000502 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:15:18.269 -07 000000502 INF: Y Motor: Moved to 68.2046 after 1447 ms (table move)
17-03-18 02:15:18.279 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174987 mm (DAC = 38226)
17-03-18 02:15:18.279 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:18.279 -07 000000561 INF: FPGA: Recv ZSGSRD 36538
17-03-18 02:15:18.289 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:18.289 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:18.289 -07 000000591 INF: FPGA: Recv ZSGSRD 36534
17-03-18 02:15:18.299 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:18.299 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:18.299 -07 000000576 INF: FPGA: Recv ZSGSRD 36531
17-03-18 02:15:18.309 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:18.309 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:18.309 -07 000000462 INF: FPGA: Recv ZSGSRD 36531
17-03-18 02:15:18.319 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:18.319 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:18.319 -07 000000430 INF: FPGA: Recv ZSGSRD 36525
17-03-18 02:15:18.329 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:18.329 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:18.329 -07 000000591 INF: FPGA: Recv ZSGSRD 36524
17-03-18 02:15:18.339 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:18.339 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:18.339 -07 000000444 INF: FPGA: Recv ZSGSRD 36528
17-03-18 02:15:18.349 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:18.349 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:18.349 -07 000000590 INF: FPGA: Recv ZSGSRD 36535
17-03-18 02:15:18.359 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:18.359 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:18.359 -07 000000561 INF: FPGA: Recv ZSGSRD 36536
17-03-18 02:15:18.369 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:18.369 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:18.369 -07 000000629 INF: FPGA: Recv ZSGSRD 36535
17-03-18 02:15:18.379 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:18.379 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:15:18.379 -07 000000462 INF: FPGA: Recv ZPIEZORD 32684
17-03-18 02:15:18.389 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:18.389 -07 000000467 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.833 V. Piezo Error = -8.5 V.
17-03-18 02:15:18.389 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36532 (-174.1 uncal um), Error = 0.9 uncal um, Median = 36532 (-174.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36524 (-174.1 uncal um), Max = 36538 (-174.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:15:18.389 -07 000000467 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36532, posNoise = 6, negNoise = 8
17-03-18 02:15:18.389 -07 000000467 INF: Z Motor: After move to -0.174987, error = -0.000025, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:15:18.389 -07 000000467 INF: Z Motor: Settle wait time = 1449 ms, measure time = 111 ms (allowed 150 ms), total time = 1560 ms
17-03-18 02:15:18.389 -07 000000467 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 02:15:18.429 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-18 02:15:18.429 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:15:18.429 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:15:18.429 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:15:18.429 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:15:18.429 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:15:18.429 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:15:18.429 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:15:18.429 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:15:18.439 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:15:18.439 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:15:18.439 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:15:18.449 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:15:18.449 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:15:18.449 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:15:18.489 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:15:18.789 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:15:18.789 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:15:18.789 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:15:18.799 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 02:15:18.829 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:15:18.829 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 02:15:18.829 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:15:18.909 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:15:18.909 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:18.909 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:15:18.909 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:15:18.929 -07 000000590 INF: Autofocus start
17-03-18 02:15:18.929 -07 000000590 INF: MeasureProfile start
17-03-18 02:15:18.929 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:15:18.929 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:15:18.939 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:15:18.939 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:15:18.939 -07 000000590 INF: MeasureProfile done
17-03-18 02:15:18.939 -07 000000590 INF: X=48  Z correction [um]=0.1739867
17-03-18 02:15:18.939 -07 000000590 INF: Autofocus finished
17-03-18 02:15:19.139 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:15:19.139 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:15:19.149 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.175012669973946. ----------
17-03-18 02:15:19.149 -07 000000610 INF: Cycle	97	Tile	11	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:15:19.149 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36777, sync = True, waitForSettling = True)
17-03-18 02:15:19.149 -07 000000610 INF: Z Motor: Moving to -0.168354 mm, started at -0.175013 mm, distance = 6.66 um
17-03-18 02:15:19.159 -07 000000610 INF: FPGA: Xmit ZDACW 36777\n [Z Motor]
17-03-18 02:15:19.159 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:15:19.169 -07 000000610 INF: FPGA: 'ZDACW 36777' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:15:19.169 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:15:19.169 -07 000000606 INF: FPGA: Recv ZDACR 36777
17-03-18 02:15:19.179 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:19.179 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:15:19.329 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:19.329 -07 000000576 INF: FPGA: Recv ZSGSRD 35491
17-03-18 02:15:19.339 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:15:19.339 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:19.339 -07 000000590 INF: FPGA: Recv ZSGSRD 35499
17-03-18 02:15:19.349 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:19.349 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:19.349 -07 000000502 INF: FPGA: Recv ZSGSRD 35499
17-03-18 02:15:19.359 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:19.359 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:19.359 -07 000000444 INF: FPGA: Recv ZSGSRD 35495
17-03-18 02:15:19.369 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:19.369 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:19.369 -07 000000579 INF: FPGA: Recv ZSGSRD 35496
17-03-18 02:15:19.379 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:19.379 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:19.379 -07 000000576 INF: FPGA: Recv ZSGSRD 35502
17-03-18 02:15:19.389 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:19.389 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:19.389 -07 000000590 INF: FPGA: Recv ZSGSRD 35491
17-03-18 02:15:19.399 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:19.399 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:19.399 -07 000000502 INF: FPGA: Recv ZSGSRD 35495
17-03-18 02:15:19.409 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:19.409 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:19.409 -07 000000444 INF: FPGA: Recv ZSGSRD 35497
17-03-18 02:15:19.419 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:19.419 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:19.419 -07 000000561 INF: FPGA: Recv ZSGSRD 35498
17-03-18 02:15:19.429 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:15:19.429 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:15:19.429 -07 000000430 INF: FPGA: Recv ZPIEZORD 31299
17-03-18 02:15:19.439 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:19.439 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.612 V. Piezo Error = -9.3 V.
17-03-18 02:15:19.439 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35496 (-167.5 uncal um), Error = 0.9 uncal um, Median = 35496 (-167.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35491 (-167.5 uncal um), Max = 35502 (-167.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:15:19.439 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35496, posNoise = 6, negNoise = 5
17-03-18 02:15:19.439 -07 000000610 INF: Z Motor: After move to -0.168354, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:15:19.439 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:15:19.439 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:15:19.439 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:15:19.439 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:15:19.439 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:15:19.439 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:15:19.439 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:15:19.439 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:15:19.439 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:15:19.439 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:15:19.439 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:15:19.439 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:15:19.439 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:15:19.439 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:15:19.439 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:15:19.449 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:15:19.449 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:15:19.459 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 02:15:19.459 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:15:19.459 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 02:15:19.459 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:15:19.459 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 36953 150\n [Camera]
17-03-18 02:15:19.659 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:15:20.059 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:15:20.059 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:15:20.059 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:15:20.059 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:15:20.059 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:15:20.059 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:15:20.059 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:15:20.059 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:15:20.059 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:15:20.059 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:15:20.249 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36953 779
17-03-18 02:15:20.399 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:15:20.439 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 02:15:20.439 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 02:15:20.439 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:20.449 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 02:15:20.449 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:15:20.449 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:20.449 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:15:20.449 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:15:20.449 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:15:20.449 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:15:20.589 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:15:20.589 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:15:20.589 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:15:20.699 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:15:20.699 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:15:20.709 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:15:20.709 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:15:20.709 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:15:20.709 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:15:20.709 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:15:20.779 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:15:20.779 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:15:20.779 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 36953 150' command took 2 ms to send, 1306 ms to get response, and 1317 ms overall
17-03-18 02:15:20.779 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:15:20.779 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.168357186195082. ------
17-03-18 02:15:20.789 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:15:20.789 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17506 mm
17-03-18 02:15:20.789 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:15:20.789 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 02:15:20.789 -07 000000455 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 02:15:20.789 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:15:20.789 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38241, sync = True, waitForSettling = False)
17-03-18 02:15:20.789 -07 000000569 INF: Z Motor: Moving to -0.175056 mm, started at -0.168357 mm, distance = -6.70 um
17-03-18 02:15:20.799 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:15:20.799 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:15:20.809 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:20.809 -07 000000461 INF: FPGA: Recv YRDPOS 139684
17-03-18 02:15:20.819 -07 000000569 INF: FPGA: Xmit ZDACW 38241\n [Z Motor]
17-03-18 02:15:20.819 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:15:20.819 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:15:20.819 -07 000000455 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:20.819 -07 000000455 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:15:20.819 -07 000000455 INF: Y Motor: Moving 1340 steps-16
17-03-18 02:15:20.829 -07 000000569 INF: FPGA: 'ZDACW 38241' command took 2 ms to send, 0 ms to get response, and 33 ms overall
17-03-18 02:15:20.829 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:15:20.829 -07 000000606 INF: FPGA: Recv ZDACR 38241
17-03-18 02:15:20.839 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:15:20.839 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:20.839 -07 000000569 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 02:15:20.999 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:15:20.999 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:15:21.099 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 02:15:21.099 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:15:21.099 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:21.109 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:15:21.109 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:15:21.109 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:21.109 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:15:21.109 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:15:21.109 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-18 02:15:21.109 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 02:15:21.209 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 02:15:21.209 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 02:15:21.259 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:21.259 -07 000000430 INF: FPGA: Recv YRDPOS 141366
17-03-18 02:15:21.269 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:15:21.269 -07 000000455 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:21.269 -07 000000455 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 02:15:21.269 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.838 mm, average velocity = 2.143 mm/sec
17-03-18 02:15:21.439 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 4.027603,
17-03-18 02:15:21.469 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:15:21.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:15:22.219 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:22.219 -07 000000626 INF: FPGA: Recv YRDPOS 141366
17-03-18 02:15:22.229 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:15:22.229 -07 000000455 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:22.249 -07 000000455 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:15:22.249 -07 000000455 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:15:22.249 -07 000000455 INF: Y Motor: Moved to 69.0264 after 1462 ms (table move)
17-03-18 02:15:22.259 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175056 mm (DAC = 38241)
17-03-18 02:15:22.259 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:22.259 -07 000000502 INF: FPGA: Recv ZSGSRD 36537
17-03-18 02:15:22.269 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:15:22.269 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:22.269 -07 000000461 INF: FPGA: Recv ZSGSRD 36541
17-03-18 02:15:22.279 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:22.279 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:22.279 -07 000000626 INF: FPGA: Recv ZSGSRD 36539
17-03-18 02:15:22.289 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:22.289 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:22.289 -07 000000430 INF: FPGA: Recv ZSGSRD 36542
17-03-18 02:15:22.299 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:22.299 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:22.299 -07 000000606 INF: FPGA: Recv ZSGSRD 36538
17-03-18 02:15:22.309 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:22.309 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:22.309 -07 000000424 INF: FPGA: Recv ZSGSRD 36541
17-03-18 02:15:22.319 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:22.319 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:22.319 -07 000000444 INF: FPGA: Recv ZSGSRD 36535
17-03-18 02:15:22.329 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:22.329 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:22.329 -07 000000502 INF: FPGA: Recv ZSGSRD 36540
17-03-18 02:15:22.339 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:22.339 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:22.339 -07 000000461 INF: FPGA: Recv ZSGSRD 36549
17-03-18 02:15:22.349 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:22.349 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:22.349 -07 000000569 INF: FPGA: Recv ZSGSRD 36540
17-03-18 02:15:22.359 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:22.359 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:15:22.359 -07 000000591 INF: FPGA: Recv ZPIEZORD 32690
17-03-18 02:15:22.369 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:22.369 -07 000000561 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.835 V. Piezo Error = -8.5 V.
17-03-18 02:15:22.369 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.1 um, Read 10 ADC samples: Avg = 36540 (-174.2 uncal um), Error = 0.9 uncal um, Median = 36540 (-174.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36535 (-174.1 uncal um), Max = 36549 (-174.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:15:22.369 -07 000000561 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36540, posNoise = 9, negNoise = 5
17-03-18 02:15:22.369 -07 000000561 INF: Z Motor: After move to -0.175056, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:15:22.369 -07 000000561 INF: Z Motor: Settle wait time = 1465 ms, measure time = 109 ms (allowed 150 ms), total time = 1574 ms
17-03-18 02:15:22.369 -07 000000561 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:15:22.419 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 02:15:22.419 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:15:22.419 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:15:22.419 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:15:22.419 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:15:22.419 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:15:22.419 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:15:22.419 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:15:22.419 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:15:22.419 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:15:22.429 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:15:22.429 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:15:22.439 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:15:22.439 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 02:15:22.439 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:15:22.489 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 02:15:22.789 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 02:15:22.789 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 02:15:22.789 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:15:22.789 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 02:15:22.829 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:15:22.829 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 02:15:22.829 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 02:15:22.909 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 02:15:22.909 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:22.909 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:15:22.909 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 02:15:22.929 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:15:22.929 -07 000000462 INF: Autofocus start
17-03-18 02:15:22.929 -07 000000462 INF: MeasureProfile start
17-03-18 02:15:22.929 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:15:22.939 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:15:22.939 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:15:22.939 -07 000000462 INF: MeasureProfile done
17-03-18 02:15:22.939 -07 000000462 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 02:15:22.939 -07 000000462 INF: Autofocus finished
17-03-18 02:15:23.139 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:15:23.139 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:15:23.139 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.17506406367108. ----------
17-03-18 02:15:23.139 -07 000000610 INF: Cycle	97	Tile	12	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:15:23.149 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36721, sync = True, waitForSettling = True)
17-03-18 02:15:23.149 -07 000000610 INF: Z Motor: Moving to -0.168098 mm, started at -0.175064 mm, distance = 6.97 um
17-03-18 02:15:23.149 -07 000000610 INF: FPGA: Xmit ZDACW 36721\n [Z Motor]
17-03-18 02:15:23.149 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:15:23.159 -07 000000610 INF: FPGA: 'ZDACW 36721' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:23.159 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:15:23.159 -07 000000462 INF: FPGA: Recv ZDACR 36721
17-03-18 02:15:23.169 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:23.169 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:15:23.319 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:23.319 -07 000000561 INF: FPGA: Recv ZSGSRD 35456
17-03-18 02:15:23.329 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:23.329 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:23.329 -07 000000591 INF: FPGA: Recv ZSGSRD 35454
17-03-18 02:15:23.339 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:23.339 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:23.339 -07 000000467 INF: FPGA: Recv ZSGSRD 35459
17-03-18 02:15:23.349 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:23.349 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:23.349 -07 000000576 INF: FPGA: Recv ZSGSRD 35453
17-03-18 02:15:23.359 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:23.359 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:23.359 -07 000000629 INF: FPGA: Recv ZSGSRD 35458
17-03-18 02:15:23.369 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:23.369 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:23.369 -07 000000502 INF: FPGA: Recv ZSGSRD 35461
17-03-18 02:15:23.379 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:23.379 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:23.379 -07 000000461 INF: FPGA: Recv ZSGSRD 35457
17-03-18 02:15:23.389 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:23.389 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:23.389 -07 000000462 INF: FPGA: Recv ZSGSRD 35456
17-03-18 02:15:23.399 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:23.399 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:23.399 -07 000000512 INF: FPGA: Recv ZSGSRD 35459
17-03-18 02:15:23.409 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:23.409 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:23.409 -07 000000591 INF: FPGA: Recv ZSGSRD 35455
17-03-18 02:15:23.419 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:23.419 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:15:23.419 -07 000000430 INF: FPGA: Recv ZPIEZORD 31254
17-03-18 02:15:23.429 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:23.429 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.603 V. Piezo Error = -9.3 V.
17-03-18 02:15:23.429 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35457 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35456 (-167.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35453 (-167.2 uncal um), Max = 35461 (-167.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:15:23.429 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35457, posNoise = 4, negNoise = 4
17-03-18 02:15:23.429 -07 000000610 INF: Z Motor: After move to -0.168098, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:15:23.429 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:15:23.429 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:15:23.429 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:15:23.429 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:15:23.429 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:15:23.429 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:15:23.429 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:15:23.429 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:15:23.429 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:15:23.429 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:15:23.429 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:15:23.429 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:15:23.429 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:15:23.429 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:15:23.429 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:15:23.429 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:15:23.439 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:15:23.449 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:15:23.449 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:15:23.449 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:15:23.449 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:15:23.449 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 36898 150\n [Camera]
17-03-18 02:15:23.649 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:15:24.049 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:15:24.049 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:15:24.049 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:15:24.049 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:15:24.049 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:15:24.049 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:15:24.049 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:15:24.049 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:15:24.049 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:15:24.049 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:15:24.229 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36898 779
17-03-18 02:15:24.379 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:15:24.429 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:15:24.429 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:15:24.429 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:24.429 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:15:24.429 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:15:24.429 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:24.429 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:15:24.429 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:15:24.429 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:15:24.439 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:15:24.569 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:15:24.569 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:15:24.579 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:15:24.689 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:15:24.689 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:15:24.689 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:15:24.699 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:15:24.699 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:15:24.699 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:15:24.699 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:15:24.769 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:15:24.769 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:15:24.769 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 36898 150' command took 2 ms to send, 1311 ms to get response, and 1318 ms overall
17-03-18 02:15:24.769 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:15:24.769 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.168106641921553. ------
17-03-18 02:15:24.769 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:15:24.769 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17446 mm
17-03-18 02:15:24.769 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:15:24.779 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 02:15:24.779 -07 000000579 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 02:15:24.779 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:15:24.779 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:15:24.779 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:24.779 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38111, sync = True, waitForSettling = False)
17-03-18 02:15:24.779 -07 000000626 INF: Z Motor: Moving to -0.174461 mm, started at -0.168107 mm, distance = -6.35 um
17-03-18 02:15:24.779 -07 000000430 INF: FPGA: Recv YRDPOS 141367
17-03-18 02:15:24.789 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:24.789 -07 000000579 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:24.789 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:15:24.789 -07 000000579 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:15:24.789 -07 000000579 INF: Y Motor: Moving 1353 steps-33
17-03-18 02:15:24.799 -07 000000626 INF: FPGA: Xmit ZDACW 38111\n [Z Motor]
17-03-18 02:15:24.799 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:15:24.809 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:15:24.809 -07 000000626 INF: FPGA: 'ZDACW 38111' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:15:24.819 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:15:24.819 -07 000000606 INF: FPGA: Recv ZDACR 38111
17-03-18 02:15:24.829 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:15:24.829 -07 000000626 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 02:15:24.989 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:15:24.989 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 195 ms to get response, and 214 ms overall
17-03-18 02:15:25.099 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:15:25.099 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:15:25.099 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:25.099 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:15:25.099 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:15:25.099 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:25.099 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:25.099 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:25.099 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 527 ms.
17-03-18 02:15:25.109 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 02:15:25.179 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 02:15:25.179 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 02:15:25.229 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:25.229 -07 000000590 INF: FPGA: Recv YRDPOS 143078
17-03-18 02:15:25.239 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:15:25.239 -07 000000579 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:25.239 -07 000000579 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 02:15:25.239 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.846 mm, average velocity = 2.159 mm/sec
17-03-18 02:15:26.189 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:26.189 -07 000000430 INF: FPGA: Recv YRDPOS 143079
17-03-18 02:15:26.199 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:26.199 -07 000000579 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:26.219 -07 000000579 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:15:26.219 -07 000000579 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:15:26.219 -07 000000579 INF: Y Motor: Moved to 69.8628 after 1447 ms (table move)
17-03-18 02:15:26.229 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174461 mm (DAC = 38111)
17-03-18 02:15:26.229 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:26.229 -07 000000462 INF: FPGA: Recv ZSGSRD 36450
17-03-18 02:15:26.239 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:15:26.239 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:26.239 -07 000000591 INF: FPGA: Recv ZSGSRD 36448
17-03-18 02:15:26.249 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:26.249 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:26.249 -07 000000561 INF: FPGA: Recv ZSGSRD 36452
17-03-18 02:15:26.259 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:26.259 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:26.259 -07 000000579 INF: FPGA: Recv ZSGSRD 36451
17-03-18 02:15:26.269 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:26.269 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:26.269 -07 000000629 INF: FPGA: Recv ZSGSRD 36445
17-03-18 02:15:26.279 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:26.279 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:26.279 -07 000000444 INF: FPGA: Recv ZSGSRD 36445
17-03-18 02:15:26.289 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:26.289 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:26.289 -07 000000569 INF: FPGA: Recv ZSGSRD 36451
17-03-18 02:15:26.299 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:26.299 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:26.299 -07 000000579 INF: FPGA: Recv ZSGSRD 36450
17-03-18 02:15:26.309 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:26.309 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:26.309 -07 000000462 INF: FPGA: Recv ZSGSRD 36445
17-03-18 02:15:26.319 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:26.319 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:26.319 -07 000000467 INF: FPGA: Recv ZSGSRD 36449
17-03-18 02:15:26.329 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:26.329 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:15:26.329 -07 000000606 INF: FPGA: Recv ZPIEZORD 32558
17-03-18 02:15:26.339 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:26.339 -07 000000461 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.815 V. Piezo Error = -8.6 V.
17-03-18 02:15:26.339 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.5 um, Read 10 ADC samples: Avg = 36449 (-173.6 uncal um), Error = 0.9 uncal um, Median = 36450 (-173.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36445 (-173.6 uncal um), Max = 36452 (-173.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:15:26.339 -07 000000461 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36449, posNoise = 3, negNoise = 4
17-03-18 02:15:26.339 -07 000000461 INF: Z Motor: After move to -0.174461, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:15:26.339 -07 000000461 INF: Z Motor: Settle wait time = 1449 ms, measure time = 110 ms (allowed 150 ms), total time = 1559 ms
17-03-18 02:15:26.339 -07 000000461 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:15:26.379 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-18 02:15:26.379 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:15:26.379 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:15:26.379 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:15:26.379 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:15:26.379 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:15:26.379 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:15:26.379 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:15:26.389 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:15:26.389 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:15:26.389 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:15:26.389 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:15:26.399 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:15:26.399 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:15:26.409 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:15:26.449 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:15:26.469 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:15:26.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:15:26.749 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:15:26.749 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:15:26.749 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:15:26.749 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 02:15:26.789 -07 000000569 INF: FPGA: Recv @CAMSNAP 384
17-03-18 02:15:26.799 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 02:15:26.799 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 392 ms overall
17-03-18 02:15:26.799 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 3.999021,
17-03-18 02:15:26.869 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:15:26.869 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:26.869 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:15:26.869 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:15:26.899 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:15:26.899 -07 000000629 INF: Autofocus start
17-03-18 02:15:26.899 -07 000000629 INF: MeasureProfile start
17-03-18 02:15:26.899 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:15:26.909 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:15:26.909 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:15:26.909 -07 000000629 INF: MeasureProfile done
17-03-18 02:15:26.909 -07 000000629 INF: X=48  Z correction [um]=0.1739867
17-03-18 02:15:26.909 -07 000000629 INF: Autofocus finished
17-03-18 02:15:27.109 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:15:27.109 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:15:27.109 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.17447946036618. ----------
17-03-18 02:15:27.109 -07 000000610 INF: Cycle	97	Tile	13	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:15:27.119 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36662, sync = True, waitForSettling = True)
17-03-18 02:15:27.119 -07 000000610 INF: Z Motor: Moving to -0.167828 mm, started at -0.174479 mm, distance = 6.65 um
17-03-18 02:15:27.119 -07 000000610 INF: FPGA: Xmit ZDACW 36662\n [Z Motor]
17-03-18 02:15:27.119 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:15:27.129 -07 000000610 INF: FPGA: 'ZDACW 36662' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:27.129 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:15:27.129 -07 000000512 INF: FPGA: Recv ZDACR 36662
17-03-18 02:15:27.139 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:27.139 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:15:27.289 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:27.289 -07 000000569 INF: FPGA: Recv ZSGSRD 35415
17-03-18 02:15:27.299 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:15:27.299 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:27.299 -07 000000462 INF: FPGA: Recv ZSGSRD 35415
17-03-18 02:15:27.309 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:27.309 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:27.309 -07 000000629 INF: FPGA: Recv ZSGSRD 35411
17-03-18 02:15:27.319 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:27.319 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:27.319 -07 000000576 INF: FPGA: Recv ZSGSRD 35411
17-03-18 02:15:27.329 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:27.329 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:27.329 -07 000000502 INF: FPGA: Recv ZSGSRD 35415
17-03-18 02:15:27.339 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:27.339 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:27.339 -07 000000569 INF: FPGA: Recv ZSGSRD 35419
17-03-18 02:15:27.349 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:27.349 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:27.349 -07 000000462 INF: FPGA: Recv ZSGSRD 35418
17-03-18 02:15:27.359 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:27.359 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:27.359 -07 000000512 INF: FPGA: Recv ZSGSRD 35412
17-03-18 02:15:27.369 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:27.369 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:27.369 -07 000000576 INF: FPGA: Recv ZSGSRD 35409
17-03-18 02:15:27.379 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:27.379 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:27.379 -07 000000579 INF: FPGA: Recv ZSGSRD 35417
17-03-18 02:15:27.389 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:27.389 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:15:27.389 -07 000000569 INF: FPGA: Recv ZPIEZORD 31175
17-03-18 02:15:27.399 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:27.399 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.594 V. Piezo Error = -9.3 V.
17-03-18 02:15:27.399 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35414 (-167.0 uncal um), Error = 0.9 uncal um, Median = 35415 (-167.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35409 (-166.9 uncal um), Max = 35419 (-167.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:15:27.399 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35414, posNoise = 5, negNoise = 5
17-03-18 02:15:27.399 -07 000000610 INF: Z Motor: After move to -0.167828, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:15:27.399 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:15:27.399 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:15:27.399 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:15:27.399 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:15:27.399 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:15:27.399 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:15:27.399 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:15:27.399 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:15:27.399 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:15:27.399 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:15:27.399 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:15:27.399 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:15:27.399 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:15:27.399 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:15:27.399 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:15:27.399 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:15:27.409 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:15:27.409 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:15:27.409 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:15:27.409 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:15:27.409 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:15:27.419 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 36839 150\n [Camera]
17-03-18 02:15:27.619 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:15:28.009 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:15:28.009 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:15:28.009 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:15:28.009 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:15:28.009 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:15:28.009 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:15:28.009 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:15:28.019 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:15:28.019 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:15:28.019 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:15:28.199 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36839 779
17-03-18 02:15:28.349 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:15:28.389 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:15:28.389 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 02:15:28.389 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:28.389 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 02:15:28.389 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 02:15:28.389 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:28.399 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:15:28.399 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:15:28.399 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:15:28.409 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:15:28.549 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1122
17-03-18 02:15:28.549 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1122
17-03-18 02:15:28.549 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:15:28.659 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1122
17-03-18 02:15:28.659 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1122
17-03-18 02:15:28.659 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:15:28.669 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:15:28.669 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:15:28.669 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:15:28.669 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:15:28.729 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-18 02:15:28.739 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:15:28.739 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 36839 150' command took 2 ms to send, 1310 ms to get response, and 1317 ms overall
17-03-18 02:15:28.739 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:15:28.739 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.167830400799457. ------
17-03-18 02:15:28.739 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:15:28.739 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17420 mm
17-03-18 02:15:28.739 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:15:28.739 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 02:15:28.739 -07 000000461 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 02:15:28.739 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38054, sync = True, waitForSettling = False)
17-03-18 02:15:28.739 -07 000000561 INF: Z Motor: Moving to -0.174200 mm, started at -0.167830 mm, distance = -6.37 um
17-03-18 02:15:28.749 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:28.749 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:15:28.749 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-18 02:15:28.749 -07 000000462 INF: FPGA: Recv YRDPOS 143079
17-03-18 02:15:28.759 -07 000000561 INF: FPGA: Xmit ZDACW 38054\n [Z Motor]
17-03-18 02:15:28.759 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:15:28.759 -07 000000461 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:28.759 -07 000000461 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:15:28.759 -07 000000461 INF: Y Motor: Moving 1344 steps-21
17-03-18 02:15:28.759 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:15:28.769 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:15:28.769 -07 000000561 INF: FPGA: 'ZDACW 38054' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:15:28.779 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:15:28.789 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:15:28.789 -07 000000462 INF: FPGA: Recv ZDACR 38054
17-03-18 02:15:28.799 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:15:28.799 -07 000000561 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 02:15:28.969 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:15:28.969 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 223 ms overall
17-03-18 02:15:29.059 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 02:15:29.059 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:15:29.059 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:29.069 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 02:15:29.069 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:15:29.069 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:29.069 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:29.069 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:29.069 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-18 02:15:29.079 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:15:29.149 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 02:15:29.149 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:15:29.199 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:29.199 -07 000000462 INF: FPGA: Recv YRDPOS 144768
17-03-18 02:15:29.209 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:15:29.209 -07 000000461 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:29.209 -07 000000461 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 02:15:29.209 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-18 02:15:30.159 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:30.159 -07 000000626 INF: FPGA: Recv YRDPOS 144769
17-03-18 02:15:30.169 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:15:30.169 -07 000000461 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:30.189 -07 000000461 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:15:30.189 -07 000000461 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:15:30.189 -07 000000461 INF: Y Motor: Moved to 70.6880 after 1449 ms (table move)
17-03-18 02:15:30.199 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174200 mm (DAC = 38054)
17-03-18 02:15:30.199 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:30.199 -07 000000591 INF: FPGA: Recv ZSGSRD 36410
17-03-18 02:15:30.209 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:15:30.209 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:30.209 -07 000000606 INF: FPGA: Recv ZSGSRD 36407
17-03-18 02:15:30.219 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:30.219 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:30.219 -07 000000590 INF: FPGA: Recv ZSGSRD 36407
17-03-18 02:15:30.229 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:30.229 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:30.229 -07 000000462 INF: FPGA: Recv ZSGSRD 36409
17-03-18 02:15:30.239 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:30.239 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:30.239 -07 000000430 INF: FPGA: Recv ZSGSRD 36406
17-03-18 02:15:30.249 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:30.249 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:30.249 -07 000000444 INF: FPGA: Recv ZSGSRD 36404
17-03-18 02:15:30.259 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:30.259 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:30.259 -07 000000561 INF: FPGA: Recv ZSGSRD 36403
17-03-18 02:15:30.269 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:30.269 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:30.269 -07 000000512 INF: FPGA: Recv ZSGSRD 36403
17-03-18 02:15:30.279 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:30.279 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:30.279 -07 000000576 INF: FPGA: Recv ZSGSRD 36411
17-03-18 02:15:30.289 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:30.289 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:30.289 -07 000000629 INF: FPGA: Recv ZSGSRD 36406
17-03-18 02:15:30.299 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:30.299 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:15:30.299 -07 000000424 INF: FPGA: Recv ZPIEZORD 32528
17-03-18 02:15:30.309 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:30.309 -07 000000467 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.807 V. Piezo Error = -8.6 V.
17-03-18 02:15:30.309 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.2 um, Read 10 ADC samples: Avg = 36407 (-173.3 uncal um), Error = 0.9 uncal um, Median = 36406 (-173.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36403 (-173.3 uncal um), Max = 36411 (-173.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:15:30.309 -07 000000467 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36407, posNoise = 4, negNoise = 4
17-03-18 02:15:30.309 -07 000000467 INF: Z Motor: After move to -0.174200, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:15:30.309 -07 000000467 INF: Z Motor: Settle wait time = 1452 ms, measure time = 110 ms (allowed 150 ms), total time = 1562 ms
17-03-18 02:15:30.309 -07 000000467 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:15:30.349 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-18 02:15:30.349 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:15:30.349 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:15:30.349 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:15:30.349 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:15:30.349 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:15:30.349 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:15:30.349 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:15:30.359 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:15:30.359 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:15:30.359 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:15:30.359 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:15:30.369 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:15:30.369 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:15:30.369 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:15:30.419 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:15:30.719 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:15:30.719 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:15:30.719 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:15:30.719 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 02:15:30.759 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:15:30.759 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 02:15:30.759 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 02:15:30.839 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:15:30.839 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:30.839 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:15:30.839 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 02:15:30.859 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:15:30.859 -07 000000444 INF: Autofocus start
17-03-18 02:15:30.859 -07 000000444 INF: MeasureProfile start
17-03-18 02:15:30.859 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:15:30.869 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:15:30.869 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:15:30.869 -07 000000444 INF: MeasureProfile done
17-03-18 02:15:30.869 -07 000000444 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:15:30.869 -07 000000444 INF: Autofocus finished
17-03-18 02:15:31.069 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:15:31.069 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 02:15:31.069 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.174209643456226. ----------
17-03-18 02:15:31.069 -07 000000610 INF: Cycle	97	Tile	14	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:15:31.079 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36551, sync = True, waitForSettling = True)
17-03-18 02:15:31.079 -07 000000610 INF: Z Motor: Moving to -0.167320 mm, started at -0.174210 mm, distance = 6.89 um
17-03-18 02:15:31.079 -07 000000610 INF: FPGA: Xmit ZDACW 36551\n [Z Motor]
17-03-18 02:15:31.079 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:15:31.089 -07 000000610 INF: FPGA: 'ZDACW 36551' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:15:31.089 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:15:31.089 -07 000000569 INF: FPGA: Recv ZDACR 36551
17-03-18 02:15:31.099 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:31.099 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:15:31.249 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:31.249 -07 000000467 INF: FPGA: Recv ZSGSRD 35336
17-03-18 02:15:31.259 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:15:31.259 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:31.259 -07 000000561 INF: FPGA: Recv ZSGSRD 35337
17-03-18 02:15:31.269 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:31.269 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:31.269 -07 000000502 INF: FPGA: Recv ZSGSRD 35339
17-03-18 02:15:31.279 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:31.279 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:31.279 -07 000000430 INF: FPGA: Recv ZSGSRD 35331
17-03-18 02:15:31.289 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:31.289 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:31.289 -07 000000569 INF: FPGA: Recv ZSGSRD 35331
17-03-18 02:15:31.299 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:31.299 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:31.299 -07 000000467 INF: FPGA: Recv ZSGSRD 35341
17-03-18 02:15:31.309 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:31.309 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:31.309 -07 000000561 INF: FPGA: Recv ZSGSRD 35338
17-03-18 02:15:31.319 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:31.319 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:31.319 -07 000000461 INF: FPGA: Recv ZSGSRD 35337
17-03-18 02:15:31.329 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:31.329 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:31.329 -07 000000430 INF: FPGA: Recv ZSGSRD 35332
17-03-18 02:15:31.339 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:31.339 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:31.339 -07 000000569 INF: FPGA: Recv ZSGSRD 35335
17-03-18 02:15:31.349 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:31.349 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:15:31.349 -07 000000606 INF: FPGA: Recv ZPIEZORD 31108
17-03-18 02:15:31.359 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:31.359 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.577 V. Piezo Error = -9.3 V.
17-03-18 02:15:31.359 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35336 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35336 (-166.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35331 (-166.4 uncal um), Max = 35341 (-166.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:15:31.359 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35336, posNoise = 5, negNoise = 5
17-03-18 02:15:31.359 -07 000000610 INF: Z Motor: After move to -0.167320, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:15:31.359 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:15:31.359 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:15:31.359 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:15:31.359 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:15:31.359 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:15:31.359 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:15:31.359 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:15:31.359 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:15:31.359 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:15:31.359 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:15:31.359 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:15:31.359 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:15:31.359 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:15:31.369 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:15:31.369 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:15:31.369 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:15:31.369 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:15:31.379 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:15:31.379 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:15:31.379 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:15:31.379 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:15:31.379 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 36728 150\n [Camera]
17-03-18 02:15:31.469 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:15:31.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:15:31.579 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:15:31.969 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:15:31.969 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:15:31.979 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:15:31.979 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:15:31.979 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:15:31.979 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:15:31.979 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:15:31.979 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:15:31.979 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:15:31.979 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:15:32.159 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 3.99219,
17-03-18 02:15:32.169 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36728 779
17-03-18 02:15:32.319 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:15:32.349 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:15:32.349 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 02:15:32.349 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:32.349 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:15:32.349 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:15:32.349 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:32.359 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:32.359 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:15:32.359 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:32.369 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:15:32.509 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:15:32.509 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:15:32.509 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:15:32.619 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:15:32.619 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:15:32.619 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:15:32.629 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:15:32.629 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:15:32.629 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:15:32.629 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:15:32.699 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:15:32.699 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:15:32.699 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 36728 150' command took 2 ms to send, 1312 ms to get response, and 1317 ms overall
17-03-18 02:15:32.699 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:15:32.699 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.1673293122524. ------
17-03-18 02:15:32.699 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:15:32.699 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17411 mm
17-03-18 02:15:32.699 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:15:32.709 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:15:32.709 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 02:15:32.709 -07 000000461 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 02:15:32.709 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:32.709 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 38035, sync = True, waitForSettling = False)
17-03-18 02:15:32.709 -07 000000606 INF: Z Motor: Moving to -0.174113 mm, started at -0.167329 mm, distance = -6.78 um
17-03-18 02:15:32.709 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 02:15:32.709 -07 000000467 INF: FPGA: Recv YRDPOS 144769
17-03-18 02:15:32.719 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:15:32.719 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:15:32.719 -07 000000461 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:32.719 -07 000000461 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:15:32.719 -07 000000461 INF: Y Motor: Moving 1351 steps-31
17-03-18 02:15:32.729 -07 000000606 INF: FPGA: Xmit ZDACW 38035\n [Z Motor]
17-03-18 02:15:32.729 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:15:32.739 -07 000000606 INF: FPGA: 'ZDACW 38035' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:15:32.739 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:15:32.749 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:15:32.749 -07 000000455 INF: FPGA: Recv ZDACR 38035
17-03-18 02:15:32.759 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:15:32.759 -07 000000606 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 02:15:32.919 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:15:32.919 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 208 ms overall
17-03-18 02:15:33.029 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:15:33.029 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:15:33.029 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:33.029 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 02:15:33.029 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:15:33.029 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:33.029 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:33.029 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-18 02:15:33.029 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:33.039 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 02:15:33.109 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 02:15:33.109 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 02:15:33.159 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:33.159 -07 000000455 INF: FPGA: Recv YRDPOS 146469
17-03-18 02:15:33.169 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:15:33.169 -07 000000461 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:33.169 -07 000000461 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 02:15:33.169 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.845 mm, average velocity = 2.133 mm/sec
17-03-18 02:15:34.119 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:34.119 -07 000000590 INF: FPGA: Recv YRDPOS 146470
17-03-18 02:15:34.129 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:15:34.129 -07 000000461 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:34.149 -07 000000461 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:15:34.149 -07 000000461 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:15:34.149 -07 000000461 INF: Y Motor: Moved to 71.5186 after 1444 ms (table move)
17-03-18 02:15:34.159 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174113 mm (DAC = 38035)
17-03-18 02:15:34.159 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:34.159 -07 000000502 INF: FPGA: Recv ZSGSRD 36391
17-03-18 02:15:34.169 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:15:34.169 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:34.169 -07 000000561 INF: FPGA: Recv ZSGSRD 36396
17-03-18 02:15:34.179 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:34.179 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:34.179 -07 000000462 INF: FPGA: Recv ZSGSRD 36396
17-03-18 02:15:34.189 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:34.189 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:34.189 -07 000000444 INF: FPGA: Recv ZSGSRD 36396
17-03-18 02:15:34.199 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:34.199 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:34.199 -07 000000576 INF: FPGA: Recv ZSGSRD 36393
17-03-18 02:15:34.209 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:34.209 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:34.209 -07 000000629 INF: FPGA: Recv ZSGSRD 36392
17-03-18 02:15:34.219 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:34.219 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:34.219 -07 000000461 INF: FPGA: Recv ZSGSRD 36388
17-03-18 02:15:34.229 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:34.229 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:34.229 -07 000000444 INF: FPGA: Recv ZSGSRD 36385
17-03-18 02:15:34.239 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:34.239 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:34.239 -07 000000467 INF: FPGA: Recv ZSGSRD 36391
17-03-18 02:15:34.249 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:34.249 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:34.249 -07 000000561 INF: FPGA: Recv ZSGSRD 36398
17-03-18 02:15:34.259 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:34.259 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:15:34.259 -07 000000569 INF: FPGA: Recv ZPIEZORD 32528
17-03-18 02:15:34.269 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:34.269 -07 000000591 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.804 V. Piezo Error = -8.5 V.
17-03-18 02:15:34.269 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.1 um, Read 10 ADC samples: Avg = 36393 (-173.2 uncal um), Error = 0.9 uncal um, Median = 36392 (-173.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36385 (-173.2 uncal um), Max = 36398 (-173.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:15:34.269 -07 000000591 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36393, posNoise = 5, negNoise = 8
17-03-18 02:15:34.269 -07 000000591 INF: Z Motor: After move to -0.174113, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:15:34.269 -07 000000591 INF: Z Motor: Settle wait time = 1448 ms, measure time = 109 ms (allowed 150 ms), total time = 1557 ms
17-03-18 02:15:34.269 -07 000000591 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:15:34.319 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 02:15:34.319 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:15:34.319 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:15:34.319 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:15:34.319 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:15:34.319 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:15:34.319 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:15:34.319 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:15:34.319 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:15:34.319 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:15:34.329 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:15:34.329 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:15:34.339 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:15:34.339 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:15:34.339 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:15:34.389 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:15:34.689 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:15:34.689 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:15:34.689 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:15:34.689 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 02:15:34.729 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:15:34.729 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 02:15:34.729 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-18 02:15:34.809 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:15:34.809 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:34.809 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:15:34.809 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 02:15:34.829 -07 000000512 INF: Autofocus start
17-03-18 02:15:34.829 -07 000000512 INF: MeasureProfile start
17-03-18 02:15:34.829 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:15:34.829 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:15:34.839 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:15:34.839 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:15:34.839 -07 000000512 INF: MeasureProfile done
17-03-18 02:15:34.839 -07 000000512 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:15:34.839 -07 000000512 INF: Autofocus finished
17-03-18 02:15:35.039 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:15:35.039 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:15:35.039 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.174119704486241. ----------
17-03-18 02:15:35.039 -07 000000610 INF: Cycle	97	Tile	15	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:15:35.049 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36532, sync = True, waitForSettling = True)
17-03-18 02:15:35.049 -07 000000610 INF: Z Motor: Moving to -0.167233 mm, started at -0.174120 mm, distance = 6.89 um
17-03-18 02:15:35.049 -07 000000610 INF: FPGA: Xmit ZDACW 36532\n [Z Motor]
17-03-18 02:15:35.049 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:15:35.059 -07 000000610 INF: FPGA: 'ZDACW 36532' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:15:35.059 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:15:35.059 -07 000000430 INF: FPGA: Recv ZDACR 36532
17-03-18 02:15:35.069 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:35.069 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:15:35.219 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:35.219 -07 000000576 INF: FPGA: Recv ZSGSRD 35323
17-03-18 02:15:35.229 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:15:35.229 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:35.229 -07 000000444 INF: FPGA: Recv ZSGSRD 35328
17-03-18 02:15:35.239 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:35.239 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:35.239 -07 000000591 INF: FPGA: Recv ZSGSRD 35319
17-03-18 02:15:35.249 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:35.249 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:35.249 -07 000000461 INF: FPGA: Recv ZSGSRD 35323
17-03-18 02:15:35.259 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:35.259 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:35.259 -07 000000512 INF: FPGA: Recv ZSGSRD 35324
17-03-18 02:15:35.269 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:35.269 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:35.269 -07 000000576 INF: FPGA: Recv ZSGSRD 35322
17-03-18 02:15:35.279 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:35.279 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:35.279 -07 000000444 INF: FPGA: Recv ZSGSRD 35325
17-03-18 02:15:35.289 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:35.289 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:35.289 -07 000000591 INF: FPGA: Recv ZSGSRD 35321
17-03-18 02:15:35.299 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:35.299 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:35.299 -07 000000461 INF: FPGA: Recv ZSGSRD 35324
17-03-18 02:15:35.309 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:35.309 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:35.309 -07 000000430 INF: FPGA: Recv ZSGSRD 35322
17-03-18 02:15:35.319 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:35.319 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:15:35.319 -07 000000626 INF: FPGA: Recv ZPIEZORD 31122
17-03-18 02:15:35.329 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:35.329 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.574 V. Piezo Error = -9.3 V.
17-03-18 02:15:35.329 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35323 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35323 (-166.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35319 (-166.4 uncal um), Max = 35328 (-166.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:15:35.329 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35323, posNoise = 5, negNoise = 4
17-03-18 02:15:35.329 -07 000000610 INF: Z Motor: After move to -0.167233, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:15:35.329 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:15:35.329 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:15:35.329 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:15:35.329 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:15:35.329 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:15:35.329 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:15:35.329 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:15:35.329 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:15:35.329 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:15:35.329 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:15:35.329 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:15:35.329 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:15:35.329 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:15:35.339 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:15:35.339 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:15:35.339 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:15:35.339 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:15:35.349 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:15:35.349 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:15:35.349 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:15:35.349 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:15:35.349 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 36708 150\n [Camera]
17-03-18 02:15:35.549 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:15:35.949 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:15:35.949 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:15:35.949 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:15:35.949 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:15:35.949 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:15:35.949 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:15:35.949 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:15:35.949 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:15:35.949 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:15:35.949 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:15:36.139 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36708 779
17-03-18 02:15:36.289 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:15:36.329 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 02:15:36.329 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:15:36.329 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:36.329 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 02:15:36.329 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 02:15:36.329 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:36.329 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:15:36.329 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:15:36.329 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:36.339 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:15:36.469 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:15:36.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:15:36.479 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:15:36.479 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:15:36.479 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:15:36.589 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:15:36.589 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:15:36.589 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:15:36.599 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:15:36.599 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:15:36.599 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:15:36.599 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:15:36.669 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-18 02:15:36.669 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:15:36.669 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 36708 150' command took 2 ms to send, 1312 ms to get response, and 1318 ms overall
17-03-18 02:15:36.669 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:15:36.669 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.167245797494557. ------
17-03-18 02:15:36.669 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:15:36.669 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17361 mm
17-03-18 02:15:36.669 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:15:36.679 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 02:15:36.679 -07 000000462 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-18 02:15:36.679 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:36.679 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 37925, sync = True, waitForSettling = False)
17-03-18 02:15:36.679 -07 000000629 INF: Z Motor: Moving to -0.173610 mm, started at -0.167246 mm, distance = -6.36 um
17-03-18 02:15:36.679 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:15:36.679 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:15:36.679 -07 000000590 INF: FPGA: Recv YRDPOS 146470
17-03-18 02:15:36.689 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:36.689 -07 000000462 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:36.689 -07 000000462 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:15:36.689 -07 000000462 INF: Y Motor: Moving 1350 steps-30
17-03-18 02:15:36.689 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:15:36.699 -07 000000629 INF: FPGA: Xmit ZDACW 37925\n [Z Motor]
17-03-18 02:15:36.699 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:15:36.709 -07 000000629 INF: FPGA: 'ZDACW 37925' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:15:36.709 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:15:36.719 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:15:36.719 -07 000000576 INF: FPGA: Recv ZDACR 37925
17-03-18 02:15:36.729 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:15:36.729 -07 000000629 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 02:15:36.889 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:15:36.889 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 199 ms to get response, and 217 ms overall
17-03-18 02:15:36.989 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 02:15:36.989 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:15:36.989 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:36.999 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:15:36.999 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:15:36.999 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:36.999 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:36.999 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:36.999 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 02:15:37.009 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:15:37.079 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 02:15:37.079 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 02:15:37.139 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:37.139 -07 000000590 INF: FPGA: Recv YRDPOS 148171
17-03-18 02:15:37.149 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 02:15:37.149 -07 000000462 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:37.149 -07 000000462 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:15:37.149 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-18 02:15:37.519 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 3.986717,
17-03-18 02:15:38.099 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:38.099 -07 000000430 INF: FPGA: Recv YRDPOS 148171
17-03-18 02:15:38.109 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:15:38.109 -07 000000462 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:38.129 -07 000000462 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:15:38.129 -07 000000462 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:15:38.129 -07 000000462 INF: Y Motor: Moved to 72.3491 after 1457 ms (table move)
17-03-18 02:15:38.139 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173610 mm (DAC = 37925)
17-03-18 02:15:38.139 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:38.139 -07 000000590 INF: FPGA: Recv ZSGSRD 36311
17-03-18 02:15:38.149 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:15:38.149 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:38.149 -07 000000430 INF: FPGA: Recv ZSGSRD 36318
17-03-18 02:15:38.159 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:38.159 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:38.159 -07 000000444 INF: FPGA: Recv ZSGSRD 36320
17-03-18 02:15:38.169 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:38.169 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:38.169 -07 000000461 INF: FPGA: Recv ZSGSRD 36315
17-03-18 02:15:38.179 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:38.179 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:38.179 -07 000000629 INF: FPGA: Recv ZSGSRD 36318
17-03-18 02:15:38.189 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:38.189 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:38.189 -07 000000569 INF: FPGA: Recv ZSGSRD 36313
17-03-18 02:15:38.199 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:38.199 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:38.199 -07 000000590 INF: FPGA: Recv ZSGSRD 36314
17-03-18 02:15:38.209 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:38.209 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:38.209 -07 000000461 INF: FPGA: Recv ZSGSRD 36322
17-03-18 02:15:38.219 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:38.219 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:38.219 -07 000000606 INF: FPGA: Recv ZSGSRD 36312
17-03-18 02:15:38.229 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:38.229 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:38.229 -07 000000629 INF: FPGA: Recv ZSGSRD 36318
17-03-18 02:15:38.239 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:38.239 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:15:38.239 -07 000000561 INF: FPGA: Recv ZPIEZORD 32440
17-03-18 02:15:38.249 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:38.249 -07 000000424 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.787 V. Piezo Error = -8.6 V.
17-03-18 02:15:38.249 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36316 (-172.7 uncal um), Error = 0.9 uncal um, Median = 36316 (-172.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36311 (-172.7 uncal um), Max = 36322 (-172.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:15:38.249 -07 000000424 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36316, posNoise = 6, negNoise = 5
17-03-18 02:15:38.249 -07 000000424 INF: Z Motor: After move to -0.173610, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:15:38.249 -07 000000424 INF: Z Motor: Settle wait time = 1461 ms, measure time = 108 ms (allowed 150 ms), total time = 1569 ms
17-03-18 02:15:38.249 -07 000000424 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:15:38.299 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 02:15:38.299 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:15:38.299 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:15:38.299 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:15:38.299 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:15:38.299 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:15:38.299 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:15:38.299 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:15:38.299 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:15:38.299 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:15:38.309 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:15:38.309 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:15:38.319 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:15:38.319 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:15:38.319 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:15:38.369 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:15:38.669 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:15:38.669 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:15:38.669 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:15:38.669 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 02:15:38.709 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:15:38.709 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 02:15:38.709 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 02:15:38.789 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 02:15:38.789 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:38.789 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:15:38.789 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-18 02:15:38.809 -07 000000606 INF: Autofocus start
17-03-18 02:15:38.809 -07 000000606 INF: MeasureProfile start
17-03-18 02:15:38.809 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:15:38.819 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:15:38.819 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-18 02:15:38.819 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:15:38.829 -07 000000606 INF: MeasureProfile done
17-03-18 02:15:38.829 -07 000000606 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:15:38.829 -07 000000606 INF: Autofocus finished
17-03-18 02:15:39.019 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:15:39.019 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 02:15:39.019 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173625040151326. ----------
17-03-18 02:15:39.019 -07 000000610 INF: Cycle	97	Tile	16	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:15:39.029 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36439, sync = True, waitForSettling = True)
17-03-18 02:15:39.029 -07 000000610 INF: Z Motor: Moving to -0.166807 mm, started at -0.173625 mm, distance = 6.82 um
17-03-18 02:15:39.029 -07 000000610 INF: FPGA: Xmit ZDACW 36439\n [Z Motor]
17-03-18 02:15:39.029 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:15:39.039 -07 000000610 INF: FPGA: 'ZDACW 36439' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:15:39.039 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:15:39.039 -07 000000502 INF: FPGA: Recv ZDACR 36439
17-03-18 02:15:39.049 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:39.049 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:15:39.199 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:39.199 -07 000000629 INF: FPGA: Recv ZSGSRD 35259
17-03-18 02:15:39.209 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:15:39.209 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:39.209 -07 000000461 INF: FPGA: Recv ZSGSRD 35251
17-03-18 02:15:39.219 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:39.219 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:39.219 -07 000000467 INF: FPGA: Recv ZSGSRD 35256
17-03-18 02:15:39.229 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:39.229 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:39.229 -07 000000455 INF: FPGA: Recv ZSGSRD 35246
17-03-18 02:15:39.239 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:39.239 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:39.239 -07 000000606 INF: FPGA: Recv ZSGSRD 35256
17-03-18 02:15:39.249 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:39.249 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:39.249 -07 000000629 INF: FPGA: Recv ZSGSRD 35258
17-03-18 02:15:39.259 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:39.259 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:39.259 -07 000000626 INF: FPGA: Recv ZSGSRD 35257
17-03-18 02:15:39.269 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:39.269 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:39.269 -07 000000591 INF: FPGA: Recv ZSGSRD 35257
17-03-18 02:15:39.279 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:39.279 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:39.279 -07 000000576 INF: FPGA: Recv ZSGSRD 35252
17-03-18 02:15:39.289 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:39.289 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:39.289 -07 000000462 INF: FPGA: Recv ZSGSRD 35256
17-03-18 02:15:39.299 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:39.299 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:15:39.299 -07 000000430 INF: FPGA: Recv ZPIEZORD 31026
17-03-18 02:15:39.309 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:39.309 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.560 V. Piezo Error = -9.3 V.
17-03-18 02:15:39.309 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35255 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35256 (-165.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35246 (-165.9 uncal um), Max = 35259 (-166.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:15:39.309 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35255, posNoise = 4, negNoise = 9
17-03-18 02:15:39.309 -07 000000610 INF: Z Motor: After move to -0.166807, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:15:39.309 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:15:39.309 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:15:39.309 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:15:39.309 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:15:39.309 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:15:39.309 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:15:39.309 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:15:39.309 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:15:39.309 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:15:39.309 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:15:39.309 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:15:39.309 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:15:39.309 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:15:39.309 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:15:39.309 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:15:39.319 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:15:39.319 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:15:39.319 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:15:39.319 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:15:39.319 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:15:39.319 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:15:39.329 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 36616 150\n [Camera]
17-03-18 02:15:39.529 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:15:39.919 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:15:39.919 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:15:39.919 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:15:39.919 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:15:39.919 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:15:39.929 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:15:39.929 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:15:39.929 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:15:39.929 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:15:39.929 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:15:40.119 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36616 779
17-03-18 02:15:40.259 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:15:40.299 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:15:40.299 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:15:40.299 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:40.309 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:15:40.309 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 02:15:40.309 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:15:40.309 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:40.309 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:15:40.309 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:15:40.309 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:15:40.449 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:15:40.449 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:15:40.459 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:15:40.569 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:15:40.569 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:15:40.569 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:15:40.579 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:15:40.579 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:15:40.579 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:15:40.579 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:15:40.649 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-18 02:15:40.649 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:15:40.649 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 36616 150' command took 2 ms to send, 1314 ms to get response, and 1321 ms overall
17-03-18 02:15:40.649 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:15:40.649 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.166808951068917. ------
17-03-18 02:15:40.649 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:15:40.649 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17344 mm
17-03-18 02:15:40.649 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:15:40.659 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:15:40.659 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 37888, sync = True, waitForSettling = False)
17-03-18 02:15:40.659 -07 000000424 INF: Z Motor: Moving to -0.173440 mm, started at -0.166809 mm, distance = -6.63 um
17-03-18 02:15:40.659 -07 000000424 INF: FPGA: Xmit ZDACW 37888\n [Z Motor]
17-03-18 02:15:40.659 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 02:15:40.659 -07 000000430 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 02:15:40.659 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 02:15:40.659 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:15:40.669 -07 000000424 INF: FPGA: 'ZDACW 37888' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:15:40.669 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:40.669 -07 000000569 INF: FPGA: Recv YRDPOS 148171
17-03-18 02:15:40.679 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:15:40.679 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:15:40.679 -07 000000430 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:40.679 -07 000000430 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:15:40.679 -07 000000430 INF: Y Motor: Moving 1350 steps-28
17-03-18 02:15:40.689 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:15:40.689 -07 000000512 INF: FPGA: Recv ZDACR 37888
17-03-18 02:15:40.699 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:15:40.699 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:15:40.699 -07 000000424 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 02:15:40.879 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:15:40.879 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 218 ms overall
17-03-18 02:15:40.959 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 02:15:40.959 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 02:15:40.959 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:40.959 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 02:15:40.959 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:15:40.959 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:40.959 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:40.959 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:40.959 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 507 ms.
17-03-18 02:15:40.969 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:15:41.069 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 02:15:41.069 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 02:15:41.119 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:41.119 -07 000000590 INF: FPGA: Recv YRDPOS 149863
17-03-18 02:15:41.129 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:15:41.129 -07 000000430 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:41.129 -07 000000430 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 02:15:41.129 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.843 mm, average velocity = 2.135 mm/sec
17-03-18 02:15:41.469 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:15:41.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:15:42.079 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:42.079 -07 000000512 INF: FPGA: Recv YRDPOS 149864
17-03-18 02:15:42.089 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:15:42.089 -07 000000430 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:42.109 -07 000000430 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:15:42.109 -07 000000430 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:15:42.109 -07 000000430 INF: Y Motor: Moved to 73.1758 after 1454 ms (table move)
17-03-18 02:15:42.119 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173440 mm (DAC = 37888)
17-03-18 02:15:42.119 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:42.119 -07 000000467 INF: FPGA: Recv ZSGSRD 36286
17-03-18 02:15:42.129 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:15:42.129 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:42.129 -07 000000626 INF: FPGA: Recv ZSGSRD 36291
17-03-18 02:15:42.139 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:42.139 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:42.139 -07 000000579 INF: FPGA: Recv ZSGSRD 36294
17-03-18 02:15:42.149 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:42.149 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:42.149 -07 000000591 INF: FPGA: Recv ZSGSRD 36290
17-03-18 02:15:42.159 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:42.159 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:42.159 -07 000000502 INF: FPGA: Recv ZSGSRD 36292
17-03-18 02:15:42.169 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:42.169 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:42.169 -07 000000561 INF: FPGA: Recv ZSGSRD 36283
17-03-18 02:15:42.179 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:42.179 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:42.179 -07 000000444 INF: FPGA: Recv ZSGSRD 36288
17-03-18 02:15:42.189 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:42.199 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:42.199 -07 000000502 INF: FPGA: Recv ZSGSRD 36288
17-03-18 02:15:42.209 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:15:42.209 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:42.209 -07 000000606 INF: FPGA: Recv ZSGSRD 36294
17-03-18 02:15:42.219 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:42.219 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:42.219 -07 000000424 INF: FPGA: Recv ZSGSRD 36294
17-03-18 02:15:42.229 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:42.229 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:15:42.229 -07 000000576 INF: FPGA: Recv ZPIEZORD 32393
17-03-18 02:15:42.239 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:42.239 -07 000000462 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.781 V. Piezo Error = -8.6 V.
17-03-18 02:15:42.239 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36290 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36290 (-172.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36283 (-172.5 uncal um), Max = 36294 (-172.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:15:42.239 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36290, posNoise = 4, negNoise = 7
17-03-18 02:15:42.239 -07 000000462 INF: Z Motor: After move to -0.173440, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:15:42.239 -07 000000462 INF: Z Motor: Settle wait time = 1459 ms, measure time = 118 ms (allowed 150 ms), total time = 1577 ms
17-03-18 02:15:42.239 -07 000000462 INF: Z Motor: Waiting extra 32 ms after reading position to reach expected total of 150 ms
17-03-18 02:15:42.279 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 02:15:42.279 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:15:42.279 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:15:42.279 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:15:42.279 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:15:42.279 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:15:42.279 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:15:42.279 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:15:42.279 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:15:42.279 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:15:42.289 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:15:42.289 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:15:42.299 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:15:42.299 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:15:42.299 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:15:42.349 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 02:15:42.649 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 02:15:42.649 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 02:15:42.649 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:15:42.649 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 02:15:42.689 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:15:42.689 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 02:15:42.689 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 02:15:42.769 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:15:42.769 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:42.769 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:15:42.769 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:15:42.789 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:15:42.789 -07 000000591 INF: Autofocus start
17-03-18 02:15:42.789 -07 000000591 INF: MeasureProfile start
17-03-18 02:15:42.799 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:15:42.799 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:15:42.799 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:15:42.809 -07 000000591 INF: MeasureProfile done
17-03-18 02:15:42.809 -07 000000591 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:15:42.809 -07 000000591 INF: Autofocus finished
17-03-18 02:15:42.879 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 3.96762,
17-03-18 02:15:42.999 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:15:42.999 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:15:42.999 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.17345801063564. ----------
17-03-18 02:15:42.999 -07 000000610 INF: Cycle	97	Tile	17	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:15:43.009 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36385, sync = True, waitForSettling = True)
17-03-18 02:15:43.009 -07 000000610 INF: Z Motor: Moving to -0.166560 mm, started at -0.173458 mm, distance = 6.90 um
17-03-18 02:15:43.009 -07 000000610 INF: FPGA: Xmit ZDACW 36385\n [Z Motor]
17-03-18 02:15:43.009 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:15:43.019 -07 000000610 INF: FPGA: 'ZDACW 36385' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:43.019 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:15:43.019 -07 000000626 INF: FPGA: Recv ZDACR 36385
17-03-18 02:15:43.029 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:43.029 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:15:43.179 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:43.179 -07 000000606 INF: FPGA: Recv ZSGSRD 35221
17-03-18 02:15:43.189 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:43.189 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:43.189 -07 000000512 INF: FPGA: Recv ZSGSRD 35217
17-03-18 02:15:43.199 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:43.199 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:43.199 -07 000000444 INF: FPGA: Recv ZSGSRD 35219
17-03-18 02:15:43.209 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:43.209 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:43.209 -07 000000502 INF: FPGA: Recv ZSGSRD 35213
17-03-18 02:15:43.219 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:43.219 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:43.219 -07 000000629 INF: FPGA: Recv ZSGSRD 35217
17-03-18 02:15:43.229 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:43.229 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:43.229 -07 000000424 INF: FPGA: Recv ZSGSRD 35214
17-03-18 02:15:43.239 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:15:43.239 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:43.239 -07 000000606 INF: FPGA: Recv ZSGSRD 35212
17-03-18 02:15:43.249 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:43.249 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:43.249 -07 000000579 INF: FPGA: Recv ZSGSRD 35216
17-03-18 02:15:43.259 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:43.259 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:43.259 -07 000000444 INF: FPGA: Recv ZSGSRD 35219
17-03-18 02:15:43.269 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:43.269 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:43.269 -07 000000461 INF: FPGA: Recv ZSGSRD 35221
17-03-18 02:15:43.279 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:43.279 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:15:43.279 -07 000000424 INF: FPGA: Recv ZPIEZORD 30986
17-03-18 02:15:43.289 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:43.289 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.552 V. Piezo Error = -9.3 V.
17-03-18 02:15:43.289 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35217 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35217 (-165.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35212 (-165.7 uncal um), Max = 35221 (-165.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:15:43.289 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35217, posNoise = 4, negNoise = 5
17-03-18 02:15:43.289 -07 000000610 INF: Z Motor: After move to -0.166560, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:15:43.289 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:15:43.289 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:15:43.289 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:15:43.289 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:15:43.289 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:15:43.289 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:15:43.289 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:15:43.289 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:15:43.289 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:15:43.289 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:15:43.289 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:15:43.289 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:15:43.289 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:15:43.299 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:15:43.299 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:15:43.299 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:15:43.299 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:15:43.309 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:15:43.309 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:15:43.309 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:15:43.309 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:15:43.309 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 36561 150\n [Camera]
17-03-18 02:15:43.509 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:15:43.899 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:15:43.909 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:15:43.909 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:15:43.909 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:15:43.909 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:15:43.909 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:15:43.909 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:15:43.909 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:15:43.909 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:15:43.909 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:15:44.099 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36561 779
17-03-18 02:15:44.249 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:15:44.279 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 02:15:44.279 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 02:15:44.279 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:44.279 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:15:44.279 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 02:15:44.279 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:44.289 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:44.289 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:44.289 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:15:44.289 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 02:15:44.439 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:15:44.439 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:15:44.439 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:15:44.549 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:15:44.549 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:15:44.549 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:15:44.559 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:15:44.559 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:15:44.559 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:15:44.559 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:15:44.629 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:15:44.629 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:15:44.629 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 36561 150' command took 2 ms to send, 1313 ms to get response, and 1317 ms overall
17-03-18 02:15:44.629 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:15:44.629 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.166564831007531. ------
17-03-18 02:15:44.629 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:15:44.639 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17279 mm
17-03-18 02:15:44.639 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:15:44.639 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:15:44.639 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 02:15:44.639 -07 000000626 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-18 02:15:44.639 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 37746, sync = True, waitForSettling = False)
17-03-18 02:15:44.639 -07 000000569 INF: Z Motor: Moving to -0.172790 mm, started at -0.166565 mm, distance = -6.23 um
17-03-18 02:15:44.649 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:15:44.649 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:44.649 -07 000000455 INF: FPGA: Recv YRDPOS 149864
17-03-18 02:15:44.659 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:15:44.659 -07 000000626 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:44.659 -07 000000626 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:15:44.659 -07 000000626 INF: Y Motor: Moving 1355 steps-35
17-03-18 02:15:44.659 -07 000000569 INF: FPGA: Xmit ZDACW 37746\n [Z Motor]
17-03-18 02:15:44.659 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:15:44.669 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:15:44.669 -07 000000569 INF: FPGA: 'ZDACW 37746' command took 4 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:15:44.679 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:15:44.689 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:15:44.689 -07 000000591 INF: FPGA: Recv ZDACR 37746
17-03-18 02:15:44.699 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:15:44.699 -07 000000569 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 02:15:44.869 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:15:44.869 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:15:44.949 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 02:15:44.949 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:15:44.949 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:44.949 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:15:44.949 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:15:44.949 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:44.959 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:44.959 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:44.959 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-18 02:15:44.959 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:15:45.049 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 02:15:45.049 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 02:15:45.089 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:45.099 -07 000000512 INF: FPGA: Recv YRDPOS 151568
17-03-18 02:15:45.099 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-18 02:15:45.099 -07 000000626 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:45.099 -07 000000626 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 02:15:45.099 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.847 mm, average velocity = 2.149 mm/sec
17-03-18 02:15:46.049 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:46.049 -07 000000444 INF: FPGA: Recv YRDPOS 151568
17-03-18 02:15:46.059 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:46.059 -07 000000626 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:46.079 -07 000000626 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:15:46.079 -07 000000626 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:15:46.079 -07 000000626 INF: Y Motor: Moved to 74.0078 after 1437 ms (table move)
17-03-18 02:15:46.079 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172790 mm (DAC = 37746)
17-03-18 02:15:46.079 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:46.079 -07 000000591 INF: FPGA: Recv ZSGSRD 36180
17-03-18 02:15:46.089 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:15:46.089 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:46.089 -07 000000462 INF: FPGA: Recv ZSGSRD 36187
17-03-18 02:15:46.099 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:46.099 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:46.099 -07 000000455 INF: FPGA: Recv ZSGSRD 36188
17-03-18 02:15:46.109 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:46.109 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:46.109 -07 000000461 INF: FPGA: Recv ZSGSRD 36192
17-03-18 02:15:46.119 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:46.119 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:46.119 -07 000000424 INF: FPGA: Recv ZSGSRD 36191
17-03-18 02:15:46.129 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:46.129 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:46.129 -07 000000606 INF: FPGA: Recv ZSGSRD 36193
17-03-18 02:15:46.139 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:46.139 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:46.139 -07 000000444 INF: FPGA: Recv ZSGSRD 36188
17-03-18 02:15:46.149 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:46.149 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:46.149 -07 000000461 INF: FPGA: Recv ZSGSRD 36185
17-03-18 02:15:46.159 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:46.159 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:46.159 -07 000000455 INF: FPGA: Recv ZSGSRD 36184
17-03-18 02:15:46.169 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:46.169 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:46.169 -07 000000512 INF: FPGA: Recv ZSGSRD 36191
17-03-18 02:15:46.179 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:46.179 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:15:46.179 -07 000000579 INF: FPGA: Recv ZPIEZORD 32285
17-03-18 02:15:46.189 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:46.189 -07 000000561 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.760 V. Piezo Error = -8.6 V.
17-03-18 02:15:46.189 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36188 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36188 (-171.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36180 (-171.9 uncal um), Max = 36193 (-172.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:15:46.189 -07 000000561 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36188, posNoise = 5, negNoise = 8
17-03-18 02:15:46.189 -07 000000561 INF: Z Motor: After move to -0.172790, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:15:46.189 -07 000000561 INF: Z Motor: Settle wait time = 1442 ms, measure time = 104 ms (allowed 150 ms), total time = 1546 ms
17-03-18 02:15:46.189 -07 000000561 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 02:15:46.239 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-18 02:15:46.239 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:15:46.239 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:15:46.239 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:15:46.239 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:15:46.239 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:15:46.239 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:15:46.239 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:15:46.239 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:15:46.239 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:15:46.249 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:15:46.249 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:15:46.249 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:15:46.249 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:15:46.259 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:15:46.299 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:15:46.469 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:15:46.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:15:46.599 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:15:46.599 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:15:46.599 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:15:46.599 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 02:15:46.639 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:15:46.639 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 02:15:46.639 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:15:46.719 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:15:46.719 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:46.719 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:15:46.719 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:15:46.739 -07 000000455 INF: Autofocus start
17-03-18 02:15:46.739 -07 000000455 INF: MeasureProfile start
17-03-18 02:15:46.739 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:15:46.739 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:15:46.749 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:15:46.749 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:15:46.749 -07 000000455 INF: MeasureProfile done
17-03-18 02:15:46.749 -07 000000455 INF: X=48  Z correction [um]=0.1739867
17-03-18 02:15:46.749 -07 000000455 INF: Autofocus finished
17-03-18 02:15:46.949 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:15:46.949 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 02:15:46.949 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.17280274099718. ----------
17-03-18 02:15:46.959 -07 000000610 INF: Cycle	97	Tile	18	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:15:46.959 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36297, sync = True, waitForSettling = True)
17-03-18 02:15:46.959 -07 000000610 INF: Z Motor: Moving to -0.166157 mm, started at -0.172803 mm, distance = 6.65 um
17-03-18 02:15:46.959 -07 000000610 INF: FPGA: Xmit ZDACW 36297\n [Z Motor]
17-03-18 02:15:46.959 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:15:46.969 -07 000000610 INF: FPGA: 'ZDACW 36297' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:15:46.969 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:15:46.969 -07 000000461 INF: FPGA: Recv ZDACR 36297
17-03-18 02:15:46.979 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:46.979 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:15:47.129 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:47.129 -07 000000591 INF: FPGA: Recv ZSGSRD 35156
17-03-18 02:15:47.139 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:15:47.139 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:47.139 -07 000000579 INF: FPGA: Recv ZSGSRD 35158
17-03-18 02:15:47.149 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:47.149 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:47.149 -07 000000444 INF: FPGA: Recv ZSGSRD 35153
17-03-18 02:15:47.159 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:47.159 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:47.159 -07 000000502 INF: FPGA: Recv ZSGSRD 35147
17-03-18 02:15:47.169 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:47.169 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:47.169 -07 000000461 INF: FPGA: Recv ZSGSRD 35159
17-03-18 02:15:47.179 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:47.179 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:47.179 -07 000000626 INF: FPGA: Recv ZSGSRD 35162
17-03-18 02:15:47.189 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:47.189 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:47.189 -07 000000576 INF: FPGA: Recv ZSGSRD 35156
17-03-18 02:15:47.199 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:47.199 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:47.199 -07 000000424 INF: FPGA: Recv ZSGSRD 35153
17-03-18 02:15:47.209 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:47.209 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:47.209 -07 000000591 INF: FPGA: Recv ZSGSRD 35155
17-03-18 02:15:47.219 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:47.219 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:47.219 -07 000000461 INF: FPGA: Recv ZSGSRD 35162
17-03-18 02:15:47.229 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:47.229 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:15:47.229 -07 000000512 INF: FPGA: Recv ZPIEZORD 30900
17-03-18 02:15:47.239 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:47.239 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.539 V. Piezo Error = -9.4 V.
17-03-18 02:15:47.239 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35156 (-165.3 uncal um), Error = 0.8 uncal um, Median = 35156 (-165.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35147 (-165.2 uncal um), Max = 35162 (-165.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:15:47.239 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35156, posNoise = 6, negNoise = 9
17-03-18 02:15:47.239 -07 000000610 INF: Z Motor: After move to -0.166157, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:15:47.239 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:15:47.239 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:15:47.239 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:15:47.239 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:15:47.239 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:15:47.239 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:15:47.239 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:15:47.239 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:15:47.239 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:15:47.239 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:15:47.239 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:15:47.239 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:15:47.239 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:15:47.249 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:15:47.249 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:15:47.249 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:15:47.249 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:15:47.259 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 02:15:47.259 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:15:47.259 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 02:15:47.259 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:15:47.269 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 36474 150\n [Camera]
17-03-18 02:15:47.469 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:15:47.859 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:15:47.859 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:15:47.859 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:15:47.859 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:15:47.859 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:15:47.869 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:15:47.869 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:15:47.869 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:15:47.869 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:15:47.869 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:15:48.049 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36474 779
17-03-18 02:15:48.199 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:15:48.239 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 3.988112,
17-03-18 02:15:48.259 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:15:48.259 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:15:48.259 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:48.259 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 02:15:48.259 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:15:48.259 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:48.259 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:48.259 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:15:48.269 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:48.269 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 02:15:48.389 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:15:48.389 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:15:48.389 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:15:48.499 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:15:48.499 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:15:48.509 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:15:48.509 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:15:48.509 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:15:48.509 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:15:48.509 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:15:48.579 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:15:48.579 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:15:48.579 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 36474 150' command took 2 ms to send, 1309 ms to get response, and 1318 ms overall
17-03-18 02:15:48.589 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:15:48.589 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.166172954066883. ------
17-03-18 02:15:48.589 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:15:48.589 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17206 mm
17-03-18 02:15:48.589 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:15:48.589 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 02:15:48.589 -07 000000455 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 02:15:48.589 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:15:48.589 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 37586, sync = True, waitForSettling = False)
17-03-18 02:15:48.589 -07 000000430 INF: Z Motor: Moving to -0.172058 mm, started at -0.166173 mm, distance = -5.88 um
17-03-18 02:15:48.599 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:15:48.599 -07 000000430 INF: FPGA: Xmit ZDACW 37586\n [Z Motor]
17-03-18 02:15:48.599 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:15:48.609 -07 000000430 INF: FPGA: 'ZDACW 37586' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:15:48.609 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:15:48.619 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:48.619 -07 000000444 INF: FPGA: Recv YRDPOS 151569
17-03-18 02:15:48.629 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 02:15:48.629 -07 000000455 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:48.629 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:15:48.629 -07 000000576 INF: FPGA: Recv ZDACR 37586
17-03-18 02:15:48.629 -07 000000455 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:15:48.629 -07 000000455 INF: Y Motor: Moving 1351 steps-30
17-03-18 02:15:48.639 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:15:48.639 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:15:48.639 -07 000000430 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 02:15:48.809 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:15:48.809 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 02:15:48.909 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 02:15:48.909 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:15:48.909 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:48.909 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 02:15:48.909 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:15:48.909 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:48.909 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:48.919 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:15:48.919 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-18 02:15:48.919 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 02:15:49.009 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 02:15:49.009 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-18 02:15:49.039 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:49.039 -07 000000579 INF: FPGA: Recv YRDPOS 153254
17-03-18 02:15:49.049 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:15:49.049 -07 000000455 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:49.049 -07 000000455 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 02:15:49.049 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.845 mm, average velocity = 2.212 mm/sec
17-03-18 02:15:49.999 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:49.999 -07 000000579 INF: FPGA: Recv YRDPOS 153254
17-03-18 02:15:50.009 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:15:50.009 -07 000000455 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:50.019 -07 000000455 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:15:50.019 -07 000000455 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:15:50.019 -07 000000455 INF: Y Motor: Moved to 74.8311 after 1431 ms (table move)
17-03-18 02:15:50.029 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172058 mm (DAC = 37586)
17-03-18 02:15:50.029 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:50.029 -07 000000444 INF: FPGA: Recv ZSGSRD 36078
17-03-18 02:15:50.039 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:15:50.039 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:50.039 -07 000000430 INF: FPGA: Recv ZSGSRD 36069
17-03-18 02:15:50.049 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:50.049 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:50.049 -07 000000591 INF: FPGA: Recv ZSGSRD 36072
17-03-18 02:15:50.059 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:50.059 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:50.059 -07 000000626 INF: FPGA: Recv ZSGSRD 36066
17-03-18 02:15:50.069 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:50.069 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:50.069 -07 000000424 INF: FPGA: Recv ZSGSRD 36075
17-03-18 02:15:50.079 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:50.079 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:50.079 -07 000000590 INF: FPGA: Recv ZSGSRD 36082
17-03-18 02:15:50.089 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:50.089 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:50.089 -07 000000461 INF: FPGA: Recv ZSGSRD 36085
17-03-18 02:15:50.099 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:50.099 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:50.099 -07 000000455 INF: FPGA: Recv ZSGSRD 36079
17-03-18 02:15:50.109 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:50.109 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:50.109 -07 000000430 INF: FPGA: Recv ZSGSRD 36067
17-03-18 02:15:50.119 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:50.119 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:50.119 -07 000000629 INF: FPGA: Recv ZSGSRD 36071
17-03-18 02:15:50.129 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:50.129 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:15:50.129 -07 000000591 INF: FPGA: Recv ZPIEZORD 32123
17-03-18 02:15:50.139 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:15:50.139 -07 000000467 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.735 V. Piezo Error = -8.7 V.
17-03-18 02:15:50.139 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36074 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36074 (-171.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36066 (-171.1 uncal um), Max = 36085 (-171.3 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:15:50.139 -07 000000467 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36074, posNoise = 11, negNoise = 8
17-03-18 02:15:50.139 -07 000000467 INF: Z Motor: After move to -0.172058, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:15:50.139 -07 000000467 INF: Z Motor: Settle wait time = 1433 ms, measure time = 109 ms (allowed 150 ms), total time = 1542 ms
17-03-18 02:15:50.139 -07 000000467 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:15:50.189 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-18 02:15:50.189 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:15:50.189 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:15:50.189 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:15:50.189 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:15:50.189 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:15:50.189 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:15:50.189 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:15:50.189 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:15:50.189 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:15:50.199 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:15:50.199 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:15:50.209 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:15:50.209 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:15:50.209 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:15:50.259 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:15:50.559 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:15:50.559 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:15:50.559 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:15:50.559 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 02:15:50.599 -07 000000444 INF: FPGA: Recv @CAMSNAP 381
17-03-18 02:15:50.599 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 02:15:50.599 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 386 ms overall
17-03-18 02:15:50.679 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 121 ms.
17-03-18 02:15:50.679 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:50.679 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:15:50.679 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-18 02:15:50.699 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:15:50.699 -07 000000606 INF: Autofocus start
17-03-18 02:15:50.699 -07 000000606 INF: MeasureProfile start
17-03-18 02:15:50.699 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:15:50.709 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:15:50.709 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:15:50.709 -07 000000606 INF: MeasureProfile done
17-03-18 02:15:50.709 -07 000000606 INF: X=-32  Z correction [um]=-0.2344
17-03-18 02:15:50.709 -07 000000606 INF: Autofocus finished
17-03-18 02:15:50.909 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:15:50.909 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:15:50.909 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.17207038081302. ----------
17-03-18 02:15:50.909 -07 000000610 INF: Cycle	97	Tile	19	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:15:50.919 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36048, sync = True, waitForSettling = True)
17-03-18 02:15:50.919 -07 000000610 INF: Z Motor: Moving to -0.165017 mm, started at -0.172070 mm, distance = 7.05 um
17-03-18 02:15:50.919 -07 000000610 INF: FPGA: Xmit ZDACW 36048\n [Z Motor]
17-03-18 02:15:50.919 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:15:50.929 -07 000000610 INF: FPGA: 'ZDACW 36048' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:15:50.929 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:15:50.929 -07 000000561 INF: FPGA: Recv ZDACR 36048
17-03-18 02:15:50.939 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:50.939 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:15:51.089 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:51.089 -07 000000569 INF: FPGA: Recv ZSGSRD 34978
17-03-18 02:15:51.099 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:51.099 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:51.099 -07 000000444 INF: FPGA: Recv ZSGSRD 34975
17-03-18 02:15:51.109 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:51.109 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:51.109 -07 000000467 INF: FPGA: Recv ZSGSRD 34980
17-03-18 02:15:51.119 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:51.119 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:51.119 -07 000000579 INF: FPGA: Recv ZSGSRD 34975
17-03-18 02:15:51.129 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:51.129 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:51.129 -07 000000561 INF: FPGA: Recv ZSGSRD 34978
17-03-18 02:15:51.139 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:51.139 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:51.139 -07 000000569 INF: FPGA: Recv ZSGSRD 34981
17-03-18 02:15:51.149 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:51.149 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:51.149 -07 000000444 INF: FPGA: Recv ZSGSRD 34983
17-03-18 02:15:51.159 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:51.159 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:51.159 -07 000000467 INF: FPGA: Recv ZSGSRD 34979
17-03-18 02:15:51.169 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:51.169 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:51.169 -07 000000576 INF: FPGA: Recv ZSGSRD 34974
17-03-18 02:15:51.179 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:51.179 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:51.179 -07 000000502 INF: FPGA: Recv ZSGSRD 34977
17-03-18 02:15:51.189 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:51.189 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:15:51.189 -07 000000569 INF: FPGA: Recv ZPIEZORD 30661
17-03-18 02:15:51.199 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:51.199 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.501 V. Piezo Error = -9.5 V.
17-03-18 02:15:51.199 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.0 um, Read 10 ADC samples: Avg = 34978 (-164.2 uncal um), Error = 0.9 uncal um, Median = 34978 (-164.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 34974 (-164.1 uncal um), Max = 34983 (-164.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:15:51.199 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34978, posNoise = 5, negNoise = 4
17-03-18 02:15:51.199 -07 000000610 INF: Z Motor: After move to -0.165017, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:15:51.199 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:15:51.199 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:15:51.199 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:15:51.199 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:15:51.199 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:15:51.199 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:15:51.199 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:15:51.199 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:15:51.199 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:15:51.199 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:15:51.199 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:15:51.199 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:15:51.199 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:15:51.209 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:15:51.209 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:15:51.209 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:15:51.209 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:15:51.209 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:15:51.209 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:15:51.209 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:15:51.219 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:15:51.219 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 36225 150\n [Camera]
17-03-18 02:15:51.419 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:15:51.469 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:15:51.469 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:15:51.809 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:15:51.809 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:15:51.809 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:15:51.809 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:15:51.809 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:15:51.809 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:15:51.809 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:15:51.819 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:15:51.819 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:15:51.819 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:15:51.999 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36225 779
17-03-18 02:15:52.149 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:15:52.189 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:15:52.189 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:15:52.189 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:52.189 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 02:15:52.189 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:15:52.189 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:52.189 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:15:52.199 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:15:52.199 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:15:52.199 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:15:52.339 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:15:52.339 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:15:52.339 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:15:52.459 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:15:52.459 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:15:52.459 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:15:52.469 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:15:52.469 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:15:52.469 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:15:52.469 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:15:52.529 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-18 02:15:52.539 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:15:52.539 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 36225 150' command took 2 ms to send, 1310 ms to get response, and 1317 ms overall
17-03-18 02:15:52.859 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 02:15:52.859 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:15:52.859 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:52.859 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:15:52.859 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:15:52.859 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:52.869 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:52.869 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:15:52.869 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 02:15:52.869 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 02:15:52.869 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:15:52.909 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 02:15:52.909 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 02:15:52.949 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 02:15:52.949 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 02:15:52.959 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 02:15:52.959 -07 000000461 INF: FPGA: Recv EMCUR 
17-03-18 02:15:52.969 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:15:52.969 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 02:15:53.469 -07 000000512 INF: FPGA: Recv EMIN
17-03-18 02:15:53.469 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 02:15:53.469 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 02:15:53.469 -07 000000467 INF: FPGA: Recv EMCUR 
17-03-18 02:15:53.479 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:15:53.479 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:15:53.479 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8310546875, Z-Position -0.16502944430565. ------
17-03-18 02:15:53.479 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:15:53.479 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13987 mm
17-03-18 02:15:53.479 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:15:53.479 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 02:15:53.479 -07 000000591 INF: Y Motor: Moving to 59.9126 mm, started at 74.8311 mm, delta = -14.9184 mm
17-03-18 02:15:53.479 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30555, sync = True, waitForSettling = False)
17-03-18 02:15:53.479 -07 000000569 INF: Z Motor: Moving to -0.139872 mm, started at -0.165029 mm, distance = 25.16 um
17-03-18 02:15:53.479 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:15:53.489 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:53.489 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:15:53.489 -07 000000576 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:15:53.498 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:15:53.498 -07 000000591 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:53.498 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:15:53.498 -07 000000591 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 02:15:53.498 -07 000000591 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 02:15:53.508 -07 000000569 INF: FPGA: Xmit ZDACW 30555\n [Z Motor]
17-03-18 02:15:53.508 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:15:53.518 -07 000000569 INF: FPGA: 'ZDACW 30555' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 02:15:53.518 -07 000000591 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 02:15:53.528 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:15:53.528 -07 000000579 INF: FPGA: Recv ZDACR 30555
17-03-18 02:15:53.538 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:15:53.538 -07 000000569 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 02:15:53.598 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 3.997626,
17-03-18 02:15:53.698 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:15:53.698 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 02:15:55.138 -07 000000606 INF: FPGA: Recv YMVTO 122703 23903
17-03-18 02:15:55.138 -07 000000591 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1639 ms overall
17-03-18 02:15:55.138 -07 000000591 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 02:15:55.138 -07 000000591 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23871 steps, but required 23903 steps (14.939 mm). Slippage = 0.020 mm (0.00%).
17-03-18 02:15:55.138 -07 000000591 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1639 ms, distance = 14.918 mm, average velocity = 9.102 mm/sec
17-03-18 02:15:56.468 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:15:56.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:15:57.988 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:15:57.988 -07 000000561 INF: FPGA: Recv YRDPOS 122698
17-03-18 02:15:57.998 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:15:57.998 -07 000000591 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:15:58.028 -07 000000591 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:15:58.028 -07 000000591 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-18 02:15:58.028 -07 000000591 INF: Y Motor: Moved to 59.9111 after 4547 ms
17-03-18 02:15:58.038 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139872 mm (DAC = 30555)
17-03-18 02:15:58.038 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:58.038 -07 000000606 INF: FPGA: Recv ZSGSRD 31071
17-03-18 02:15:58.048 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:58.048 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:58.048 -07 000000579 INF: FPGA: Recv ZSGSRD 31058
17-03-18 02:15:58.058 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:58.058 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:58.058 -07 000000424 INF: FPGA: Recv ZSGSRD 31063
17-03-18 02:15:58.068 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:58.068 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:58.068 -07 000000455 INF: FPGA: Recv ZSGSRD 31065
17-03-18 02:15:58.078 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:58.078 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:58.078 -07 000000455 INF: FPGA: Recv ZSGSRD 31068
17-03-18 02:15:58.088 -07 000000512 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:58.088 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:58.088 -07 000000467 INF: FPGA: Recv ZSGSRD 31069
17-03-18 02:15:58.098 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:58.098 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:58.098 -07 000000430 INF: FPGA: Recv ZSGSRD 31060
17-03-18 02:15:58.108 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:58.108 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:58.108 -07 000000629 INF: FPGA: Recv ZSGSRD 31062
17-03-18 02:15:58.118 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:58.118 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:58.118 -07 000000502 INF: FPGA: Recv ZSGSRD 31063
17-03-18 02:15:58.128 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:58.128 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:58.128 -07 000000590 INF: FPGA: Recv ZSGSRD 31062
17-03-18 02:15:58.138 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:58.138 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:15:58.138 -07 000000455 INF: FPGA: Recv ZPIEZORD 26550
17-03-18 02:15:58.148 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:58.148 -07 000000512 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.662 V. Piezo Error = -9.9 V.
17-03-18 02:15:58.148 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.9 um, Read 10 ADC samples: Avg = 31064 (-139.1 uncal um), Error = 0.8 uncal um, Median = 31063 (-139.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 31058 (-139.0 uncal um), Max = 31071 (-139.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:15:58.148 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31064, posNoise = 7, negNoise = 6
17-03-18 02:15:58.148 -07 000000512 INF: Z Motor: After move to -0.139872, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:15:58.148 -07 000000512 INF: Z Motor: Settle wait time = 4550 ms, measure time = 111 ms (allowed 150 ms), total time = 4661 ms
17-03-18 02:15:58.148 -07 000000512 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 02:15:58.188 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4703 ms
17-03-18 02:15:58.188 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:15:58.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:15:58.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:15:58.188 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:15:58.188 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:15:58.188 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:15:58.188 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:15:58.188 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:15:58.188 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 02:15:58.218 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 02:15:58.218 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:15:58.218 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 02:15:58.218 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:15:58.238 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:15:58.238 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 44 ms.
17-03-18 02:15:58.238 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:15:58.278 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:15:58.578 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:15:58.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:15:58.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:15:58.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 02:15:58.618 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:15:58.618 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 02:15:58.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:15:58.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 121 ms.
17-03-18 02:15:58.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:15:58.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:15:58.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 02:15:58.818 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:15:58.818 -07 000000579 INF: Image SNR check: start
17-03-18 02:15:58.818 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:15:58.828 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:15:58.828 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:15:58.828 -07 000000579 INF: Image SNR check: pass  [peak (Max-Min)=144.00]
17-03-18 02:15:58.828 -07 000000579 INF: Autofocus start
17-03-18 02:15:58.838 -07 000000579 INF: MeasureProfile start
17-03-18 02:15:58.848 -07 000000579 INF: MeasureProfile done
17-03-18 02:15:58.848 -07 000000579 INF: X=-37  Z correction [um]=-0.1835123
17-03-18 02:15:58.848 -07 000000579 INF: Autofocus finished
17-03-18 02:15:58.958 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 4.015368,
17-03-18 02:15:59.028 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:15:59.028 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:15:59.028 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.139885077982797. ----------
17-03-18 02:15:59.028 -07 000000610 INF: Cycle	97	Tile	1	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:15:59.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29027, sync = True, waitForSettling = True)
17-03-18 02:15:59.038 -07 000000610 INF: Z Motor: Moving to -0.132877 mm, started at -0.139885 mm, distance = 7.01 um
17-03-18 02:15:59.038 -07 000000610 INF: FPGA: Xmit ZDACW 29027\n [Z Motor]
17-03-18 02:15:59.038 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:15:59.048 -07 000000610 INF: FPGA: 'ZDACW 29027' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:15:59.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:15:59.048 -07 000000576 INF: FPGA: Recv ZDACR 29027
17-03-18 02:15:59.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:59.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:15:59.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:59.208 -07 000000590 INF: FPGA: Recv ZSGSRD 29977
17-03-18 02:15:59.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:15:59.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:59.218 -07 000000629 INF: FPGA: Recv ZSGSRD 29978
17-03-18 02:15:59.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:59.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:59.228 -07 000000424 INF: FPGA: Recv ZSGSRD 29971
17-03-18 02:15:59.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:59.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:59.238 -07 000000591 INF: FPGA: Recv ZSGSRD 29973
17-03-18 02:15:59.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:59.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:59.248 -07 000000576 INF: FPGA: Recv ZSGSRD 29971
17-03-18 02:15:59.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:59.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:59.258 -07 000000590 INF: FPGA: Recv ZSGSRD 29981
17-03-18 02:15:59.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:59.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:59.268 -07 000000629 INF: FPGA: Recv ZSGSRD 29976
17-03-18 02:15:59.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:59.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:59.278 -07 000000626 INF: FPGA: Recv ZSGSRD 29969
17-03-18 02:15:59.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:59.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:59.288 -07 000000591 INF: FPGA: Recv ZSGSRD 29977
17-03-18 02:15:59.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:59.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:15:59.298 -07 000000579 INF: FPGA: Recv ZSGSRD 29973
17-03-18 02:15:59.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:59.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:15:59.308 -07 000000590 INF: FPGA: Recv ZPIEZORD 25423
17-03-18 02:15:59.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:15:59.318 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.429 V. Piezo Error = -10.0 V.
17-03-18 02:15:59.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.9 um, Read 10 ADC samples: Avg = 29975 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29974 (-132.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29969 (-132.1 uncal um), Max = 29981 (-132.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:15:59.318 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29975, posNoise = 6, negNoise = 6
17-03-18 02:15:59.318 -07 000000610 INF: Z Motor: After move to -0.132877, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:15:59.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:15:59.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:15:59.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:15:59.318 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:15:59.318 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:15:59.318 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:15:59.318 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:15:59.318 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:15:59.318 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:15:59.318 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:15:59.318 -07 000000467 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 02:15:59.318 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:15:59.318 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:15:59.328 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:15:59.328 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:15:59.338 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:15:59.338 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:15:59.348 -07 000000467 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 02:15:59.348 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:15:59.348 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:15:59.348 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:15:59.358 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:15:59.358 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-18 02:15:59.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 29204 150\n [Camera]
17-03-18 02:15:59.558 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:15:59.948 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:15:59.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:15:59.958 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:15:59.958 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:15:59.958 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:15:59.958 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:15:59.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:15:59.958 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:15:59.958 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:00.068 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:16:00.138 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29204 779
17-03-18 02:16:00.288 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:16:00.338 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 02:16:00.338 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 02:16:00.338 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:00.338 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:16:00.338 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:16:00.438 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 481 ms.
17-03-18 02:16:00.438 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 481 ms.
17-03-18 02:16:00.438 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:00.438 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:16:00.448 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 491 ms.
17-03-18 02:16:00.478 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:16:00.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:16:00.478 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:16:00.488 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:16:00.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:16:00.488 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:16:00.488 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:16:00.488 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:16:00.488 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:00.488 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:16:00.678 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-18 02:16:00.678 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:16:00.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 29204 150' command took 2 ms to send, 1311 ms to get response, and 1317 ms overall
17-03-18 02:16:00.678 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:16:00.678 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.13288911096042. ------
17-03-18 02:16:00.678 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:16:00.678 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13912 mm
17-03-18 02:16:00.678 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:16:00.688 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:16:00.688 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:16:00.688 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:16:00.688 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 02:16:00.688 -07 000000424 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-18 02:16:00.688 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 30390, sync = True, waitForSettling = False)
17-03-18 02:16:00.688 -07 000000430 INF: Z Motor: Moving to -0.139117 mm, started at -0.132889 mm, distance = -6.23 um
17-03-18 02:16:00.698 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:00.698 -07 000000590 INF: FPGA: Recv YRDPOS 122698
17-03-18 02:16:00.708 -07 000000430 INF: FPGA: Xmit ZDACW 30390\n [Z Motor]
17-03-18 02:16:00.708 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 02:16:00.708 -07 000000424 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:00.708 -07 000000424 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:16:00.708 -07 000000424 INF: Y Motor: Moving 1330 steps2
17-03-18 02:16:00.708 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:16:00.718 -07 000000430 INF: FPGA: 'ZDACW 30390' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:16:00.718 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:16:00.718 -07 000000444 INF: FPGA: Recv ZDACR 30390
17-03-18 02:16:00.728 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:00.728 -07 000000430 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 02:16:00.728 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:16:00.868 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 02:16:00.868 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:16:00.868 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:00.868 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 02:16:00.868 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 02:16:00.868 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:00.878 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:16:00.878 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:16:00.878 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:16:00.878 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:16:00.888 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:16:00.888 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:16:01.098 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 02:16:01.098 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:16:01.138 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:01.138 -07 000000444 INF: FPGA: Recv YRDPOS 124381
17-03-18 02:16:01.148 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:16:01.148 -07 000000424 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:01.148 -07 000000424 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 02:16:01.148 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.831 mm, average velocity = 2.089 mm/sec
17-03-18 02:16:01.468 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:16:01.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:16:02.098 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:02.098 -07 000000629 INF: FPGA: Recv YRDPOS 124381
17-03-18 02:16:02.108 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:16:02.108 -07 000000424 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:02.128 -07 000000424 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:16:02.128 -07 000000424 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:16:02.128 -07 000000424 INF: Y Motor: Moved to 60.7329 after 1446 ms (table move)
17-03-18 02:16:02.138 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139117 mm (DAC = 30390)
17-03-18 02:16:02.138 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:02.138 -07 000000501 INF: FPGA: Recv ZSGSRD 30957
17-03-18 02:16:02.148 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:16:02.148 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:02.148 -07 000000576 INF: FPGA: Recv ZSGSRD 30946
17-03-18 02:16:02.158 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:02.158 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:02.158 -07 000000467 INF: FPGA: Recv ZSGSRD 30948
17-03-18 02:16:02.168 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:02.168 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:02.168 -07 000000590 INF: FPGA: Recv ZSGSRD 30945
17-03-18 02:16:02.178 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:02.178 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:02.178 -07 000000461 INF: FPGA: Recv ZSGSRD 30944
17-03-18 02:16:02.188 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:02.188 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:02.188 -07 000000501 INF: FPGA: Recv ZSGSRD 30948
17-03-18 02:16:02.198 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:02.198 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:02.198 -07 000000579 INF: FPGA: Recv ZSGSRD 30951
17-03-18 02:16:02.208 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:02.208 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:02.208 -07 000000444 INF: FPGA: Recv ZSGSRD 30948
17-03-18 02:16:02.218 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:02.218 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:02.218 -07 000000455 INF: FPGA: Recv ZSGSRD 30941
17-03-18 02:16:02.228 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:02.228 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:02.228 -07 000000424 INF: FPGA: Recv ZSGSRD 30948
17-03-18 02:16:02.238 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:02.238 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:16:02.238 -07 000000502 INF: FPGA: Recv ZPIEZORD 26731
17-03-18 02:16:02.248 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:02.248 -07 000000606 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.637 V. Piezo Error = -9.3 V.
17-03-18 02:16:02.248 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30948 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30948 (-138.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30941 (-138.3 uncal um), Max = 30957 (-138.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:16:02.248 -07 000000606 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30948, posNoise = 9, negNoise = 7
17-03-18 02:16:02.248 -07 000000606 INF: Z Motor: After move to -0.139117, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:16:02.248 -07 000000606 INF: Z Motor: Settle wait time = 1451 ms, measure time = 106 ms (allowed 150 ms), total time = 1557 ms
17-03-18 02:16:02.248 -07 000000606 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:16:02.298 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 02:16:02.298 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:16:02.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:16:02.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:16:02.298 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:16:02.298 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:16:02.298 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:16:02.298 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:16:02.298 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:16:02.298 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:16:02.308 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:16:02.308 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:16:02.318 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:16:02.318 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:16:02.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:16:02.368 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:16:02.668 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:16:02.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:16:02.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:16:02.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 02:16:02.708 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:16:02.708 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 02:16:02.708 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 02:16:02.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:16:02.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:02.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:16:02.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:16:02.808 -07 000000455 INF: Autofocus start
17-03-18 02:16:02.808 -07 000000455 INF: MeasureProfile start
17-03-18 02:16:02.808 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:16:02.808 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:16:02.818 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:16:02.818 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:16:02.818 -07 000000455 INF: MeasureProfile done
17-03-18 02:16:02.818 -07 000000455 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:16:02.818 -07 000000455 INF: Autofocus finished
17-03-18 02:16:03.018 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:16:03.018 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:16:03.018 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.139139869374353. ----------
17-03-18 02:16:03.028 -07 000000610 INF: Cycle	97	Tile	2	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:16:03.028 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28914, sync = True, waitForSettling = True)
17-03-18 02:16:03.028 -07 000000610 INF: Z Motor: Moving to -0.132360 mm, started at -0.139140 mm, distance = 6.78 um
17-03-18 02:16:03.028 -07 000000610 INF: FPGA: Xmit ZDACW 28914\n [Z Motor]
17-03-18 02:16:03.028 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:16:03.038 -07 000000610 INF: FPGA: 'ZDACW 28914' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:16:03.038 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:16:03.038 -07 000000618 INF: FPGA: Recv ZDACR 28914
17-03-18 02:16:03.048 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:03.048 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:16:03.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:03.198 -07 000000424 INF: FPGA: Recv ZSGSRD 29891
17-03-18 02:16:03.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:16:03.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:03.208 -07 000000629 INF: FPGA: Recv ZSGSRD 29888
17-03-18 02:16:03.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:03.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:03.218 -07 000000606 INF: FPGA: Recv ZSGSRD 29893
17-03-18 02:16:03.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:03.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:03.228 -07 000000467 INF: FPGA: Recv ZSGSRD 29891
17-03-18 02:16:03.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:03.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:03.238 -07 000000461 INF: FPGA: Recv ZSGSRD 29889
17-03-18 02:16:03.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:03.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:03.248 -07 000000626 INF: FPGA: Recv ZSGSRD 29896
17-03-18 02:16:03.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:03.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:03.258 -07 000000629 INF: FPGA: Recv ZSGSRD 29897
17-03-18 02:16:03.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:03.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:03.268 -07 000000576 INF: FPGA: Recv ZSGSRD 29897
17-03-18 02:16:03.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:03.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:03.278 -07 000000569 INF: FPGA: Recv ZSGSRD 29889
17-03-18 02:16:03.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:03.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:03.288 -07 000000502 INF: FPGA: Recv ZSGSRD 29893
17-03-18 02:16:03.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:03.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:16:03.298 -07 000000561 INF: FPGA: Recv ZPIEZORD 25317
17-03-18 02:16:03.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:03.308 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.412 V. Piezo Error = -10.0 V.
17-03-18 02:16:03.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29892 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29892 (-131.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29888 (-131.5 uncal um), Max = 29897 (-131.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:16:03.308 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29892, posNoise = 5, negNoise = 4
17-03-18 02:16:03.308 -07 000000610 INF: Z Motor: After move to -0.132360, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:16:03.308 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:16:03.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:16:03.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:16:03.308 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:16:03.308 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:16:03.308 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:16:03.308 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:16:03.308 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:16:03.308 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:16:03.308 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:16:03.308 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:16:03.308 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:16:03.308 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:16:03.318 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:16:03.318 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:16:03.318 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:16:03.318 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:16:03.328 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:16:03.328 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:16:03.328 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:16:03.328 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:16:03.328 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 29091 150\n [Camera]
17-03-18 02:16:03.528 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:16:03.928 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:16:03.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:16:03.928 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:16:03.928 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:16:03.928 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 02:16:03.928 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:16:03.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:16:03.928 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:16:03.928 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:03.928 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 02:16:04.118 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29091 779
17-03-18 02:16:04.268 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:16:04.318 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 4.05755,
17-03-18 02:16:04.338 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 409 ms.
17-03-18 02:16:04.338 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:16:04.338 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:04.338 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:16:04.338 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 02:16:04.338 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 410 ms.
17-03-18 02:16:04.338 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:16:04.338 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:04.348 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:16:04.358 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 423 ms.
17-03-18 02:16:04.458 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:16:04.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:16:04.458 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:16:04.458 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:16:04.458 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:16:04.458 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:16:04.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:16:04.468 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:16:04.468 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:04.468 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:16:04.648 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-18 02:16:04.658 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:16:04.658 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 29091 150' command took 2 ms to send, 1310 ms to get response, and 1321 ms overall
17-03-18 02:16:04.658 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:16:04.658 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.132355901352654. ------
17-03-18 02:16:04.658 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:16:04.658 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13907 mm
17-03-18 02:16:04.658 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:16:04.668 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 02:16:04.668 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 30381, sync = True, waitForSettling = False)
17-03-18 02:16:04.668 -07 000000591 INF: Z Motor: Moving to -0.139075 mm, started at -0.132356 mm, distance = -6.72 um
17-03-18 02:16:04.668 -07 000000591 INF: FPGA: Xmit ZDACW 30381\n [Z Motor]
17-03-18 02:16:04.668 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:16:04.668 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:16:04.668 -07 000000561 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-18 02:16:04.668 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:16:04.678 -07 000000591 INF: FPGA: 'ZDACW 30381' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:04.678 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:16:04.678 -07 000000461 INF: FPGA: Recv ZDACR 30381
17-03-18 02:16:04.688 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:04.688 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:16:04.688 -07 000000591 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 02:16:04.688 -07 000000430 INF: FPGA: Recv YRDPOS 124382
17-03-18 02:16:04.698 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:16:04.698 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:16:04.698 -07 000000561 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:04.698 -07 000000561 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:16:04.698 -07 000000561 INF: Y Motor: Moving 1343 steps-20
17-03-18 02:16:04.708 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:16:04.858 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:16:04.858 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:16:04.858 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:04.868 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:16:04.868 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 02:16:04.868 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 02:16:04.868 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:16:04.868 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:04.878 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:16:04.878 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:16:04.898 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:16:04.898 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 234 ms overall
17-03-18 02:16:05.078 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 02:16:05.078 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 379 ms overall
17-03-18 02:16:05.128 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:05.128 -07 000000590 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:16:05.138 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:16:05.138 -07 000000561 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:05.138 -07 000000561 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 02:16:05.138 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.840 mm, average velocity = 2.210 mm/sec
17-03-18 02:16:06.088 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:06.088 -07 000000591 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:16:06.098 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:16:06.098 -07 000000561 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:06.118 -07 000000561 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:16:06.118 -07 000000561 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:16:06.118 -07 000000561 INF: Y Motor: Moved to 61.5640 after 1457 ms (table move)
17-03-18 02:16:06.128 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139075 mm (DAC = 30381)
17-03-18 02:16:06.128 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:06.128 -07 000000629 INF: FPGA: Recv ZSGSRD 30939
17-03-18 02:16:06.138 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:06.138 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:06.138 -07 000000626 INF: FPGA: Recv ZSGSRD 30943
17-03-18 02:16:06.148 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:06.148 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:06.148 -07 000000502 INF: FPGA: Recv ZSGSRD 30945
17-03-18 02:16:06.158 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:06.158 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:06.158 -07 000000444 INF: FPGA: Recv ZSGSRD 30948
17-03-18 02:16:06.168 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:06.168 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:06.168 -07 000000606 INF: FPGA: Recv ZSGSRD 30941
17-03-18 02:16:06.178 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:06.178 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:06.178 -07 000000618 INF: FPGA: Recv ZSGSRD 30934
17-03-18 02:16:06.188 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:06.188 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:06.188 -07 000000629 INF: FPGA: Recv ZSGSRD 30931
17-03-18 02:16:06.198 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:06.198 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:06.198 -07 000000561 INF: FPGA: Recv ZSGSRD 30946
17-03-18 02:16:06.208 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:06.208 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:06.208 -07 000000576 INF: FPGA: Recv ZSGSRD 30946
17-03-18 02:16:06.218 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:06.218 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:06.218 -07 000000569 INF: FPGA: Recv ZSGSRD 30945
17-03-18 02:16:06.228 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:06.228 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:16:06.228 -07 000000430 INF: FPGA: Recv ZPIEZORD 26761
17-03-18 02:16:06.238 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:06.238 -07 000000424 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.636 V. Piezo Error = -9.2 V.
17-03-18 02:16:06.238 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30942 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30944 (-138.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30931 (-138.2 uncal um), Max = 30948 (-138.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 02:16:06.238 -07 000000424 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30942, posNoise = 6, negNoise = 11
17-03-18 02:16:06.238 -07 000000424 INF: Z Motor: After move to -0.139075, error = -0.000026, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:16:06.238 -07 000000424 INF: Z Motor: Settle wait time = 1460 ms, measure time = 110 ms (allowed 150 ms), total time = 1570 ms
17-03-18 02:16:06.238 -07 000000424 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:16:06.278 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 02:16:06.278 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:16:06.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:16:06.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:16:06.278 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:16:06.278 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:16:06.278 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:16:06.278 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:16:06.288 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:16:06.288 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:16:06.288 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:16:06.288 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:16:06.298 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:16:06.298 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:16:06.298 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:16:06.338 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:16:06.468 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:16:06.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:16:06.638 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:16:06.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:16:06.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:16:06.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1170533816, 0x0, 559484976) start.
17-03-18 02:16:06.678 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:16:06.678 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 02:16:06.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 02:16:06.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1170533816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:16:06.758 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:06.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:16:06.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:16:06.778 -07 000000430 INF: Autofocus start
17-03-18 02:16:06.778 -07 000000430 INF: MeasureProfile start
17-03-18 02:16:06.778 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:16:06.778 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:16:06.788 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:16:06.788 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:16:06.788 -07 000000430 INF: MeasureProfile done
17-03-18 02:16:06.788 -07 000000430 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:16:06.788 -07 000000430 INF: Autofocus finished
17-03-18 02:16:06.988 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:16:06.988 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:16:06.988 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139101324101503. ----------
17-03-18 02:16:06.988 -07 000000610 INF: Cycle	97	Tile	3	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:16:06.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28888, sync = True, waitForSettling = True)
17-03-18 02:16:06.998 -07 000000610 INF: Z Motor: Moving to -0.132241 mm, started at -0.139101 mm, distance = 6.86 um
17-03-18 02:16:06.998 -07 000000610 INF: FPGA: Xmit ZDACW 28888\n [Z Motor]
17-03-18 02:16:06.998 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 02:16:07.008 -07 000000610 INF: FPGA: 'ZDACW 28888' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:07.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:16:07.008 -07 000000626 INF: FPGA: Recv ZDACR 28888
17-03-18 02:16:07.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:07.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:16:07.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:07.168 -07 000000444 INF: FPGA: Recv ZSGSRD 29876
17-03-18 02:16:07.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:16:07.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:07.178 -07 000000430 INF: FPGA: Recv ZSGSRD 29876
17-03-18 02:16:07.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:07.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:07.188 -07 000000461 INF: FPGA: Recv ZSGSRD 29870
17-03-18 02:16:07.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:07.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:07.198 -07 000000606 INF: FPGA: Recv ZSGSRD 29873
17-03-18 02:16:07.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:07.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:07.208 -07 000000424 INF: FPGA: Recv ZSGSRD 29877
17-03-18 02:16:07.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:07.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:07.218 -07 000000591 INF: FPGA: Recv ZSGSRD 29878
17-03-18 02:16:07.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:07.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:07.228 -07 000000590 INF: FPGA: Recv ZSGSRD 29879
17-03-18 02:16:07.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:07.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:07.238 -07 000000512 INF: FPGA: Recv ZSGSRD 29874
17-03-18 02:16:07.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:07.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:07.248 -07 000000501 INF: FPGA: Recv ZSGSRD 29880
17-03-18 02:16:07.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:07.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:07.258 -07 000000512 INF: FPGA: Recv ZSGSRD 29871
17-03-18 02:16:07.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:07.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:16:07.268 -07 000000606 INF: FPGA: Recv ZPIEZORD 25353
17-03-18 02:16:07.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:07.278 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.408 V. Piezo Error = -9.9 V.
17-03-18 02:16:07.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29875 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29876 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29870 (-131.4 uncal um), Max = 29880 (-131.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:16:07.278 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29875, posNoise = 5, negNoise = 5
17-03-18 02:16:07.278 -07 000000610 INF: Z Motor: After move to -0.132241, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:16:07.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-18 02:16:07.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:16:07.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:16:07.288 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:16:07.288 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:16:07.288 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:16:07.288 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:16:07.288 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:16:07.288 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:16:07.288 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:16:07.288 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:16:07.288 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:16:07.288 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:16:07.288 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:16:07.288 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:16:07.288 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:16:07.288 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:16:07.298 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:16:07.298 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:16:07.298 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:16:07.298 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:16:07.308 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 29065 150\n [Camera]
17-03-18 02:16:07.508 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:16:07.898 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:16:07.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:16:07.898 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:16:07.898 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:16:07.908 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:16:07.908 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:16:07.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:16:07.908 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:16:07.908 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:07.908 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:16:08.098 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29065 779
17-03-18 02:16:08.238 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:16:08.288 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 02:16:08.288 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 02:16:08.288 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:08.288 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 02:16:08.288 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:16:08.288 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:16:08.288 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:08.288 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:16:08.288 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:16:08.298 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:16:08.428 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:16:08.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:16:08.438 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:16:08.438 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:16:08.438 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 02:16:08.438 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:16:08.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:16:08.438 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:16:08.438 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:08.438 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 02:16:08.628 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:16:08.628 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:16:08.628 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 29065 150' command took 2 ms to send, 1311 ms to get response, and 1318 ms overall
17-03-18 02:16:08.628 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:16:08.628 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132246689746244. ------
17-03-18 02:16:08.628 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:16:08.628 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13874 mm
17-03-18 02:16:08.628 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:16:08.638 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 30307, sync = True, waitForSettling = False)
17-03-18 02:16:08.638 -07 000000576 INF: Z Motor: Moving to -0.138737 mm, started at -0.132247 mm, distance = -6.49 um
17-03-18 02:16:08.638 -07 000000576 INF: FPGA: Xmit ZDACW 30307\n [Z Motor]
17-03-18 02:16:08.638 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:16:08.638 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:16:08.638 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 02:16:08.638 -07 000000618 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-18 02:16:08.638 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:16:08.648 -07 000000576 INF: FPGA: 'ZDACW 30307' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:08.648 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:08.648 -07 000000462 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:16:08.658 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:16:08.658 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:16:08.658 -07 000000618 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:08.658 -07 000000618 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:16:08.658 -07 000000618 INF: Y Motor: Moving 1342 steps-18
17-03-18 02:16:08.668 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:16:08.668 -07 000000591 INF: FPGA: Recv ZDACR 30307
17-03-18 02:16:08.678 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:16:08.678 -07 000000576 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 02:16:08.678 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:16:08.838 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 02:16:08.838 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:16:08.838 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:08.838 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 02:16:08.838 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:16:08.838 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:08.838 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:16:08.848 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:16:08.848 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 02:16:08.848 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:16:08.858 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:16:08.858 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 02:16:09.048 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 02:16:09.048 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 396 ms overall
17-03-18 02:16:09.098 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:09.098 -07 000000576 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:16:09.108 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:16:09.108 -07 000000618 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:09.108 -07 000000618 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 02:16:09.108 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.839 mm, average velocity = 2.118 mm/sec
17-03-18 02:16:09.678 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 4.047997,
17-03-18 02:16:10.058 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:10.058 -07 000000626 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:16:10.068 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:16:10.068 -07 000000618 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:10.108 -07 000000618 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:16:10.108 -07 000000618 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:16:10.108 -07 000000618 INF: Y Motor: Moved to 62.3955 after 1469 ms (table move)
17-03-18 02:16:10.108 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138737 mm (DAC = 30307)
17-03-18 02:16:10.108 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:10.108 -07 000000590 INF: FPGA: Recv ZSGSRD 30888
17-03-18 02:16:10.118 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:16:10.118 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:10.118 -07 000000501 INF: FPGA: Recv ZSGSRD 30888
17-03-18 02:16:10.128 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:10.128 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:10.128 -07 000000512 INF: FPGA: Recv ZSGSRD 30888
17-03-18 02:16:10.138 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:10.138 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:10.138 -07 000000579 INF: FPGA: Recv ZSGSRD 30875
17-03-18 02:16:10.148 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:10.148 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:10.148 -07 000000629 INF: FPGA: Recv ZSGSRD 30882
17-03-18 02:16:10.158 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:10.158 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:10.158 -07 000000590 INF: FPGA: Recv ZSGSRD 30884
17-03-18 02:16:10.168 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:10.168 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:10.168 -07 000000501 INF: FPGA: Recv ZSGSRD 30884
17-03-18 02:16:10.178 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:10.178 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:10.178 -07 000000512 INF: FPGA: Recv ZSGSRD 30894
17-03-18 02:16:10.188 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:10.188 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:10.188 -07 000000579 INF: FPGA: Recv ZSGSRD 30890
17-03-18 02:16:10.198 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:10.198 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:10.198 -07 000000629 INF: FPGA: Recv ZSGSRD 30891
17-03-18 02:16:10.208 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:10.208 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:16:10.208 -07 000000626 INF: FPGA: Recv ZPIEZORD 26715
17-03-18 02:16:10.218 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:10.218 -07 000000424 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.625 V. Piezo Error = -9.2 V.
17-03-18 02:16:10.218 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30886 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30888 (-138.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30875 (-137.9 uncal um), Max = 30894 (-138.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 02:16:10.218 -07 000000424 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30886, posNoise = 8, negNoise = 11
17-03-18 02:16:10.218 -07 000000424 INF: Z Motor: After move to -0.138737, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:16:10.218 -07 000000424 INF: Z Motor: Settle wait time = 1473 ms, measure time = 107 ms (allowed 150 ms), total time = 1580 ms
17-03-18 02:16:10.218 -07 000000424 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:16:10.268 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1632 ms
17-03-18 02:16:10.268 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:16:10.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:16:10.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:16:10.268 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:16:10.268 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:16:10.278 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:16:10.278 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:16:10.278 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:16:10.278 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:16:10.278 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:16:10.278 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:16:10.288 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:16:10.288 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:16:10.288 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:16:10.338 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:16:10.628 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:16:10.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:16:10.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:16:10.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 02:16:10.668 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:16:10.668 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 02:16:10.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 385 ms overall
17-03-18 02:16:10.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:16:10.748 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:10.748 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:16:10.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:16:10.778 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:16:10.778 -07 000000455 INF: Autofocus start
17-03-18 02:16:10.778 -07 000000455 INF: MeasureProfile start
17-03-18 02:16:10.778 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:16:10.788 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:16:10.788 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:16:10.798 -07 000000455 INF: MeasureProfile done
17-03-18 02:16:10.798 -07 000000455 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:16:10.798 -07 000000455 INF: Autofocus finished
17-03-18 02:16:10.988 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:16:10.988 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:16:10.988 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.138741568221564. ----------
17-03-18 02:16:10.988 -07 000000610 INF: Cycle	97	Tile	4	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:16:10.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28815, sync = True, waitForSettling = True)
17-03-18 02:16:10.998 -07 000000610 INF: Z Motor: Moving to -0.131907 mm, started at -0.138742 mm, distance = 6.83 um
17-03-18 02:16:10.998 -07 000000610 INF: FPGA: Xmit ZDACW 28815\n [Z Motor]
17-03-18 02:16:10.998 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:16:11.008 -07 000000610 INF: FPGA: 'ZDACW 28815' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:11.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:16:11.008 -07 000000576 INF: FPGA: Recv ZDACR 28815
17-03-18 02:16:11.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:11.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:16:11.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:11.168 -07 000000501 INF: FPGA: Recv ZSGSRD 29819
17-03-18 02:16:11.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:16:11.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:11.178 -07 000000430 INF: FPGA: Recv ZSGSRD 29826
17-03-18 02:16:11.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:11.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:11.188 -07 000000569 INF: FPGA: Recv ZSGSRD 29822
17-03-18 02:16:11.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:11.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:11.198 -07 000000512 INF: FPGA: Recv ZSGSRD 29820
17-03-18 02:16:11.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:11.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:11.208 -07 000000629 INF: FPGA: Recv ZSGSRD 29820
17-03-18 02:16:11.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:11.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:11.218 -07 000000576 INF: FPGA: Recv ZSGSRD 29830
17-03-18 02:16:11.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:11.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:11.228 -07 000000444 INF: FPGA: Recv ZSGSRD 29821
17-03-18 02:16:11.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:11.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:11.238 -07 000000591 INF: FPGA: Recv ZSGSRD 29824
17-03-18 02:16:11.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:11.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:11.248 -07 000000579 INF: FPGA: Recv ZSGSRD 29827
17-03-18 02:16:11.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:11.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:11.258 -07 000000467 INF: FPGA: Recv ZSGSRD 29824
17-03-18 02:16:11.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:11.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:16:11.268 -07 000000569 INF: FPGA: Recv ZPIEZORD 25321
17-03-18 02:16:11.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:11.278 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.397 V. Piezo Error = -9.9 V.
17-03-18 02:16:11.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29823 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29823 (-131.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29819 (-131.1 uncal um), Max = 29830 (-131.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:16:11.278 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29823, posNoise = 7, negNoise = 4
17-03-18 02:16:11.278 -07 000000610 INF: Z Motor: After move to -0.131907, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:16:11.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:16:11.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:16:11.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:16:11.278 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:16:11.278 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:16:11.278 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:16:11.278 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:16:11.278 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:16:11.278 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:16:11.278 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:16:11.278 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:16:11.278 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:16:11.278 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:16:11.288 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:16:11.288 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:16:11.288 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:16:11.288 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:16:11.298 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:16:11.298 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:16:11.298 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 02:16:11.298 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:16:11.298 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28992 150\n [Camera]
17-03-18 02:16:11.468 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:16:11.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:16:11.498 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-18 02:16:11.898 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:16:11.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:16:11.898 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:16:11.898 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:16:11.898 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 02:16:11.898 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:16:11.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:16:11.898 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:16:11.898 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:11.898 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 02:16:12.088 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28992 779
17-03-18 02:16:12.238 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:16:12.288 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 02:16:12.288 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:16:12.288 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:12.288 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 02:16:12.288 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:16:12.298 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:16:12.298 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:16:12.298 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:12.298 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:16:12.308 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 02:16:12.428 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:16:12.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:16:12.428 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:16:12.428 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:16:12.428 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 02:16:12.428 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:16:12.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:16:12.428 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:16:12.428 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:12.428 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 02:16:12.618 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-18 02:16:12.618 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:16:12.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28992 150' command took 2 ms to send, 1315 ms to get response, and 1318 ms overall
17-03-18 02:16:12.618 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:16:12.618 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.131912630714872. ------
17-03-18 02:16:12.628 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13865 mm
17-03-18 02:16:12.628 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:16:12.628 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:16:12.628 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 02:16:12.628 -07 000000569 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 02:16:12.628 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 30289, sync = True, waitForSettling = False)
17-03-18 02:16:12.628 -07 000000467 INF: Z Motor: Moving to -0.138654 mm, started at -0.131913 mm, distance = -6.74 um
17-03-18 02:16:12.628 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:16:12.638 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:16:12.638 -07 000000467 INF: FPGA: Xmit ZDACW 30289\n [Z Motor]
17-03-18 02:16:12.638 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:16:12.648 -07 000000467 INF: FPGA: 'ZDACW 30289' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:16:12.648 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:12.648 -07 000000561 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:16:12.658 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:16:12.658 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:16:12.658 -07 000000569 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:12.658 -07 000000569 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:16:12.658 -07 000000569 INF: Y Motor: Moving 1339 steps-15
17-03-18 02:16:12.668 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:16:12.668 -07 000000444 INF: FPGA: Recv ZDACR 30289
17-03-18 02:16:12.678 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:16:12.678 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:16:12.678 -07 000000467 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 02:16:12.828 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 02:16:12.828 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:16:12.828 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:12.828 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:16:12.828 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:16:12.828 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:12.838 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:16:12.838 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:16:12.838 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 02:16:12.838 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:16:12.858 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:16:12.858 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:16:13.058 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 02:16:13.058 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-18 02:16:13.098 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:13.098 -07 000000576 INF: FPGA: Recv YRDPOS 129483
17-03-18 02:16:13.108 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:16:13.108 -07 000000569 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:13.108 -07 000000569 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 02:16:13.108 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.837 mm, average velocity = 2.093 mm/sec
17-03-18 02:16:14.058 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:14.058 -07 000000467 INF: FPGA: Recv YRDPOS 129483
17-03-18 02:16:14.068 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:16:14.068 -07 000000569 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:14.088 -07 000000569 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:16:14.088 -07 000000569 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:16:14.088 -07 000000569 INF: Y Motor: Moved to 63.2241 after 1463 ms (table move)
17-03-18 02:16:14.098 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138654 mm (DAC = 30289)
17-03-18 02:16:14.098 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:14.098 -07 000000579 INF: FPGA: Recv ZSGSRD 30867
17-03-18 02:16:14.108 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:16:14.108 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:14.108 -07 000000444 INF: FPGA: Recv ZSGSRD 30871
17-03-18 02:16:14.118 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:14.118 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:14.118 -07 000000430 INF: FPGA: Recv ZSGSRD 30874
17-03-18 02:16:14.128 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:14.128 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:14.128 -07 000000501 INF: FPGA: Recv ZSGSRD 30882
17-03-18 02:16:14.138 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:16:14.138 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:14.138 -07 000000626 INF: FPGA: Recv ZSGSRD 30871
17-03-18 02:16:14.148 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:14.148 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:14.148 -07 000000579 INF: FPGA: Recv ZSGSRD 30872
17-03-18 02:16:14.158 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:14.158 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:14.158 -07 000000618 INF: FPGA: Recv ZSGSRD 30875
17-03-18 02:16:14.168 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:14.168 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:14.168 -07 000000424 INF: FPGA: Recv ZSGSRD 30870
17-03-18 02:16:14.178 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:14.178 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:14.178 -07 000000606 INF: FPGA: Recv ZSGSRD 30874
17-03-18 02:16:14.188 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:14.188 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:14.188 -07 000000467 INF: FPGA: Recv ZSGSRD 30866
17-03-18 02:16:14.198 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:14.198 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:16:14.198 -07 000000590 INF: FPGA: Recv ZPIEZORD 26713
17-03-18 02:16:14.208 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:14.208 -07 000000455 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.622 V. Piezo Error = -9.2 V.
17-03-18 02:16:14.208 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30872 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30872 (-137.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30866 (-137.8 uncal um), Max = 30882 (-137.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:16:14.208 -07 000000455 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30872, posNoise = 10, negNoise = 6
17-03-18 02:16:14.208 -07 000000455 INF: Z Motor: After move to -0.138654, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:16:14.208 -07 000000455 INF: Z Motor: Settle wait time = 1468 ms, measure time = 107 ms (allowed 150 ms), total time = 1575 ms
17-03-18 02:16:14.208 -07 000000455 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:16:14.258 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 02:16:14.258 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:16:14.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:16:14.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:16:14.258 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:16:14.258 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:16:14.268 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:16:14.268 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:16:14.268 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:16:14.268 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:16:14.268 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:16:14.268 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:16:14.278 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:16:14.278 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:16:14.278 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:16:14.318 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:16:14.618 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:16:14.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:16:14.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:16:14.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-18 02:16:14.658 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:16:14.658 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 02:16:14.658 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 02:16:14.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:16:14.738 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:14.738 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:16:14.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:16:14.758 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:16:14.758 -07 000000618 INF: Autofocus start
17-03-18 02:16:14.758 -07 000000618 INF: MeasureProfile start
17-03-18 02:16:14.758 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:16:14.768 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:16:14.768 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:16:14.768 -07 000000618 INF: MeasureProfile done
17-03-18 02:16:14.768 -07 000000618 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:16:14.768 -07 000000618 INF: Autofocus finished
17-03-18 02:16:14.968 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:16:14.968 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:16:14.968 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.138651629251579. ----------
17-03-18 02:16:14.978 -07 000000610 INF: Cycle	97	Tile	5	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:16:14.978 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28796, sync = True, waitForSettling = True)
17-03-18 02:16:14.978 -07 000000610 INF: Z Motor: Moving to -0.131820 mm, started at -0.138652 mm, distance = 6.83 um
17-03-18 02:16:14.978 -07 000000610 INF: FPGA: Xmit ZDACW 28796\n [Z Motor]
17-03-18 02:16:14.978 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:16:14.988 -07 000000610 INF: FPGA: 'ZDACW 28796' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:16:14.988 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:16:14.988 -07 000000629 INF: FPGA: Recv ZDACR 28796
17-03-18 02:16:14.998 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:14.998 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:16:15.038 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 4.031682,
17-03-18 02:16:15.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:15.148 -07 000000579 INF: FPGA: Recv ZSGSRD 29817
17-03-18 02:16:15.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:16:15.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:15.158 -07 000000626 INF: FPGA: Recv ZSGSRD 29812
17-03-18 02:16:15.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:15.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:15.168 -07 000000618 INF: FPGA: Recv ZSGSRD 29810
17-03-18 02:16:15.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:15.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:15.178 -07 000000569 INF: FPGA: Recv ZSGSRD 29808
17-03-18 02:16:15.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:15.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:15.188 -07 000000424 INF: FPGA: Recv ZSGSRD 29804
17-03-18 02:16:15.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:15.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:15.198 -07 000000502 INF: FPGA: Recv ZSGSRD 29814
17-03-18 02:16:15.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:15.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:15.208 -07 000000591 INF: FPGA: Recv ZSGSRD 29811
17-03-18 02:16:15.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:15.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:15.218 -07 000000455 INF: FPGA: Recv ZSGSRD 29809
17-03-18 02:16:15.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:15.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:15.228 -07 000000467 INF: FPGA: Recv ZSGSRD 29809
17-03-18 02:16:15.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:15.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:15.238 -07 000000462 INF: FPGA: Recv ZSGSRD 29811
17-03-18 02:16:15.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:16:15.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:16:15.248 -07 000000618 INF: FPGA: Recv ZPIEZORD 25336
17-03-18 02:16:15.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:15.258 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.394 V. Piezo Error = -9.8 V.
17-03-18 02:16:15.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29810 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29810 (-131.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29804 (-131.0 uncal um), Max = 29817 (-131.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:16:15.258 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29810, posNoise = 7, negNoise = 6
17-03-18 02:16:15.258 -07 000000610 INF: Z Motor: After move to -0.131820, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:16:15.258 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:16:15.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:16:15.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:16:15.258 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:16:15.258 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:16:15.258 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:16:15.258 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:16:15.258 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:16:15.258 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:16:15.258 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:16:15.258 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:16:15.258 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:16:15.258 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:16:15.258 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:16:15.258 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:16:15.258 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:16:15.268 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:16:15.268 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:16:15.268 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:16:15.268 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:16:15.268 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:16:15.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28973 150\n [Camera]
17-03-18 02:16:15.478 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:16:15.868 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:16:15.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:16:15.868 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:16:15.868 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:16:15.868 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 02:16:15.878 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:16:15.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:16:15.878 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:16:15.878 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:15.878 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 02:16:16.068 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28973 779
17-03-18 02:16:16.208 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:16:16.248 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 02:16:16.248 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 02:16:16.248 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:16.248 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 02:16:16.248 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 02:16:16.248 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:16.258 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:16:16.258 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:16:16.258 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:16:16.268 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:16:16.408 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:16:16.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:16:16.408 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:16:16.408 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:16:16.408 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 02:16:16.408 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:16:16.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:16:16.408 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:16:16.548 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:16:16.548 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:16:16.548 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:16.548 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 02:16:16.598 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:16:16.598 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:16:16.598 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28973 150' command took 2 ms to send, 1311 ms to get response, and 1317 ms overall
17-03-18 02:16:16.598 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:16:16.598 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.131829115957029. ------
17-03-18 02:16:16.598 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:16:16.598 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13800 mm
17-03-18 02:16:16.598 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:16:16.608 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 02:16:16.608 -07 000000569 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 02:16:16.608 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:16:16.608 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:16:16.608 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:16.608 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 30146, sync = True, waitForSettling = False)
17-03-18 02:16:16.608 -07 000000629 INF: Z Motor: Moving to -0.138000 mm, started at -0.131829 mm, distance = -6.17 um
17-03-18 02:16:16.608 -07 000000626 INF: FPGA: Recv YRDPOS 129484
17-03-18 02:16:16.618 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:16:16.618 -07 000000569 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:16.618 -07 000000629 INF: FPGA: Xmit ZDACW 30146\n [Z Motor]
17-03-18 02:16:16.618 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:16:16.618 -07 000000569 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:16:16.618 -07 000000569 INF: Y Motor: Moving 1341 steps-17
17-03-18 02:16:16.628 -07 000000629 INF: FPGA: 'ZDACW 30146' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 02:16:16.628 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:16:16.638 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:16:16.648 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:16:16.648 -07 000000512 INF: FPGA: Recv ZDACR 30146
17-03-18 02:16:16.658 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:16:16.658 -07 000000629 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 02:16:16.818 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 410 ms.
17-03-18 02:16:16.818 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 02:16:16.818 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:16.818 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:16:16.818 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-18 02:16:16.828 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:16:16.828 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-18 02:16:16.948 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 02:16:16.948 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:16:16.948 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:16.948 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:16:16.958 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 547 ms.
17-03-18 02:16:17.008 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:16:17.008 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 02:16:17.058 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:17.058 -07 000000576 INF: FPGA: Recv YRDPOS 131188
17-03-18 02:16:17.068 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:16:17.068 -07 000000569 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:17.068 -07 000000569 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-18 02:16:17.068 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.838 mm, average velocity = 2.139 mm/sec
17-03-18 02:16:18.018 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:18.018 -07 000000590 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:16:18.028 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:18.028 -07 000000569 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:18.048 -07 000000569 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:16:18.048 -07 000000569 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:16:18.048 -07 000000569 INF: Y Motor: Moved to 64.0571 after 1442 ms (table move)
17-03-18 02:16:18.048 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138000 mm (DAC = 30146)
17-03-18 02:16:18.048 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:18.058 -07 000000467 INF: FPGA: Recv ZSGSRD 30772
17-03-18 02:16:18.058 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 02:16:18.058 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:18.058 -07 000000590 INF: FPGA: Recv ZSGSRD 30773
17-03-18 02:16:18.068 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:16:18.068 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:18.068 -07 000000430 INF: FPGA: Recv ZSGSRD 30777
17-03-18 02:16:18.078 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:18.078 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:18.078 -07 000000512 INF: FPGA: Recv ZSGSRD 30773
17-03-18 02:16:18.088 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:18.088 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:18.088 -07 000000561 INF: FPGA: Recv ZSGSRD 30777
17-03-18 02:16:18.098 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:18.098 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:18.098 -07 000000579 INF: FPGA: Recv ZSGSRD 30769
17-03-18 02:16:18.108 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:18.108 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:18.108 -07 000000590 INF: FPGA: Recv ZSGSRD 30770
17-03-18 02:16:18.118 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:18.118 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:18.118 -07 000000430 INF: FPGA: Recv ZSGSRD 30766
17-03-18 02:16:18.128 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:18.128 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:18.128 -07 000000512 INF: FPGA: Recv ZSGSRD 30765
17-03-18 02:16:18.138 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:18.138 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:18.138 -07 000000606 INF: FPGA: Recv ZSGSRD 30771
17-03-18 02:16:18.148 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:18.148 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:16:18.148 -07 000000579 INF: FPGA: Recv ZPIEZORD 26604
17-03-18 02:16:18.158 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:18.158 -07 000000591 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.600 V. Piezo Error = -9.2 V.
17-03-18 02:16:18.158 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30771 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30772 (-137.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30765 (-137.2 uncal um), Max = 30777 (-137.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:16:18.158 -07 000000591 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30771, posNoise = 6, negNoise = 6
17-03-18 02:16:18.158 -07 000000591 INF: Z Motor: After move to -0.138000, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:16:18.158 -07 000000591 INF: Z Motor: Settle wait time = 1446 ms, measure time = 102 ms (allowed 150 ms), total time = 1548 ms
17-03-18 02:16:18.158 -07 000000591 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 02:16:18.208 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-18 02:16:18.208 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:16:18.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:16:18.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:16:18.208 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:16:18.208 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:16:18.208 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:16:18.218 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:16:18.218 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:16:18.218 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:16:18.218 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:16:18.218 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:16:18.228 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:16:18.228 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:16:18.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:16:18.268 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:16:18.568 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:16:18.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:16:18.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:16:18.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 02:16:18.608 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:16:18.608 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 02:16:18.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:16:18.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:16:18.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:18.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:16:18.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:16:18.708 -07 000000467 INF: Autofocus start
17-03-18 02:16:18.708 -07 000000467 INF: MeasureProfile start
17-03-18 02:16:18.708 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:16:18.708 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:16:18.718 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:16:18.718 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:16:18.728 -07 000000467 INF: MeasureProfile done
17-03-18 02:16:18.728 -07 000000467 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:16:18.728 -07 000000467 INF: Autofocus finished
17-03-18 02:16:18.918 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:16:18.918 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:16:18.918 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138002783825261. ----------
17-03-18 02:16:18.918 -07 000000610 INF: Cycle	97	Tile	6	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:16:18.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28640, sync = True, waitForSettling = True)
17-03-18 02:16:18.928 -07 000000610 INF: Z Motor: Moving to -0.131106 mm, started at -0.138003 mm, distance = 6.90 um
17-03-18 02:16:18.928 -07 000000610 INF: FPGA: Xmit ZDACW 28640\n [Z Motor]
17-03-18 02:16:18.928 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:16:18.938 -07 000000610 INF: FPGA: 'ZDACW 28640' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:16:18.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:16:18.938 -07 000000461 INF: FPGA: Recv ZDACR 28640
17-03-18 02:16:18.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:18.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:16:19.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:19.098 -07 000000618 INF: FPGA: Recv ZSGSRD 29702
17-03-18 02:16:19.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:16:19.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:19.108 -07 000000501 INF: FPGA: Recv ZSGSRD 29699
17-03-18 02:16:19.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:19.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:19.118 -07 000000424 INF: FPGA: Recv ZSGSRD 29696
17-03-18 02:16:19.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:19.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:19.128 -07 000000569 INF: FPGA: Recv ZSGSRD 29696
17-03-18 02:16:19.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:19.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:19.138 -07 000000461 INF: FPGA: Recv ZSGSRD 29704
17-03-18 02:16:19.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:19.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:19.148 -07 000000629 INF: FPGA: Recv ZSGSRD 29699
17-03-18 02:16:19.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:19.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:19.158 -07 000000626 INF: FPGA: Recv ZSGSRD 29701
17-03-18 02:16:19.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:19.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:19.168 -07 000000462 INF: FPGA: Recv ZSGSRD 29701
17-03-18 02:16:19.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:19.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:19.178 -07 000000569 INF: FPGA: Recv ZSGSRD 29705
17-03-18 02:16:19.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:19.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:19.188 -07 000000461 INF: FPGA: Recv ZSGSRD 29698
17-03-18 02:16:19.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:19.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:16:19.198 -07 000000591 INF: FPGA: Recv ZPIEZORD 25184
17-03-18 02:16:19.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:19.208 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.370 V. Piezo Error = -9.9 V.
17-03-18 02:16:19.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29700 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29700 (-130.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29696 (-130.3 uncal um), Max = 29705 (-130.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:16:19.208 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29700, posNoise = 5, negNoise = 4
17-03-18 02:16:19.208 -07 000000610 INF: Z Motor: After move to -0.131106, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:16:19.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:16:19.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:16:19.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:16:19.208 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:16:19.208 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:16:19.208 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:16:19.208 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:16:19.208 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:16:19.208 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:16:19.208 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:16:19.208 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:16:19.208 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:16:19.208 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:16:19.218 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:16:19.218 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:16:19.218 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:16:19.218 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:16:19.228 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 02:16:19.228 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:16:19.228 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 02:16:19.228 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:16:19.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28817 150\n [Camera]
17-03-18 02:16:19.428 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:16:19.828 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:16:19.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:16:19.828 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:16:19.828 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:16:19.838 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:16:19.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:16:19.838 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 02:16:19.838 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:16:19.838 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:19.838 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 02:16:20.018 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28817 779
17-03-18 02:16:20.168 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:16:20.228 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 02:16:20.228 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:16:20.228 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:20.228 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:16:20.228 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:16:20.228 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 02:16:20.228 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:16:20.228 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:20.238 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:16:20.238 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 02:16:20.358 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:16:20.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:16:20.358 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:16:20.358 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:16:20.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:16:20.358 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:16:20.478 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:16:20.478 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 02:16:20.478 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:20.478 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 02:16:20.488 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 4.015368,
17-03-18 02:16:20.548 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:16:20.548 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:16:20.548 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28817 150' command took 2 ms to send, 1314 ms to get response, and 1317 ms overall
17-03-18 02:16:20.548 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:16:20.548 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131122452621435. ------
17-03-18 02:16:20.548 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:16:20.548 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13770 mm
17-03-18 02:16:20.548 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:16:20.558 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 02:16:20.558 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 30080, sync = True, waitForSettling = False)
17-03-18 02:16:20.558 -07 000000467 INF: Z Motor: Moving to -0.137697 mm, started at -0.131122 mm, distance = -6.57 um
17-03-18 02:16:20.558 -07 000000467 INF: FPGA: Xmit ZDACW 30080\n [Z Motor]
17-03-18 02:16:20.558 -07 000000512 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 02:16:20.558 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:16:20.558 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 02:16:20.558 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:16:20.568 -07 000000467 INF: FPGA: 'ZDACW 30080' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:16:20.568 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:16:20.568 -07 000000629 INF: FPGA: Recv ZDACR 30080
17-03-18 02:16:20.578 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:20.578 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:20.578 -07 000000467 INF: Z Motor: MoveAbsStepped took 18 ms (did NOT wait for settling yet))
17-03-18 02:16:20.578 -07 000000626 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:16:20.588 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:16:20.588 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:16:20.588 -07 000000512 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:20.588 -07 000000512 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:16:20.588 -07 000000512 INF: Y Motor: Moving 1337 steps-12
17-03-18 02:16:20.598 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:16:20.788 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:16:20.788 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 229 ms overall
17-03-18 02:16:20.878 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 02:16:20.878 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:16:20.878 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:20.878 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 02:16:20.878 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:16:20.878 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:20.878 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:16:20.878 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 02:16:20.888 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:16:20.888 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 527 ms.
17-03-18 02:16:20.968 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 02:16:20.968 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:16:21.018 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:21.018 -07 000000461 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:16:21.028 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:21.028 -07 000000512 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:21.028 -07 000000512 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:16:21.028 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.835 mm, average velocity = 2.159 mm/sec
17-03-18 02:16:21.468 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:16:21.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:16:21.978 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:21.978 -07 000000618 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:16:21.988 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:16:21.988 -07 000000512 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:22.008 -07 000000512 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:16:22.008 -07 000000512 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:16:22.008 -07 000000512 INF: Y Motor: Moved to 64.8789 after 1455 ms (table move)
17-03-18 02:16:22.018 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137697 mm (DAC = 30080)
17-03-18 02:16:22.018 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:22.018 -07 000000576 INF: FPGA: Recv ZSGSRD 30719
17-03-18 02:16:22.028 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:16:22.028 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:22.028 -07 000000579 INF: FPGA: Recv ZSGSRD 30725
17-03-18 02:16:22.038 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:22.038 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:22.038 -07 000000502 INF: FPGA: Recv ZSGSRD 30728
17-03-18 02:16:22.048 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:22.048 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:22.048 -07 000000467 INF: FPGA: Recv ZSGSRD 30725
17-03-18 02:16:22.058 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:22.058 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:22.058 -07 000000569 INF: FPGA: Recv ZSGSRD 30731
17-03-18 02:16:22.068 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:22.068 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:22.068 -07 000000618 INF: FPGA: Recv ZSGSRD 30724
17-03-18 02:16:22.078 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:22.078 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:22.078 -07 000000626 INF: FPGA: Recv ZSGSRD 30729
17-03-18 02:16:22.088 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:22.088 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:22.088 -07 000000561 INF: FPGA: Recv ZSGSRD 30719
17-03-18 02:16:22.098 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:22.098 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:22.098 -07 000000501 INF: FPGA: Recv ZSGSRD 30718
17-03-18 02:16:22.108 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:22.108 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:22.108 -07 000000512 INF: FPGA: Recv ZSGSRD 30729
17-03-18 02:16:22.118 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:22.118 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:16:22.118 -07 000000606 INF: FPGA: Recv ZPIEZORD 26574
17-03-18 02:16:22.128 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:22.128 -07 000000455 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.590 V. Piezo Error = -9.1 V.
17-03-18 02:16:22.128 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30725 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30725 (-136.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30718 (-136.9 uncal um), Max = 30731 (-136.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:16:22.128 -07 000000455 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30725, posNoise = 6, negNoise = 7
17-03-18 02:16:22.128 -07 000000455 INF: Z Motor: After move to -0.137697, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:16:22.128 -07 000000455 INF: Z Motor: Settle wait time = 1460 ms, measure time = 108 ms (allowed 150 ms), total time = 1568 ms
17-03-18 02:16:22.128 -07 000000455 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:16:22.178 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 02:16:22.178 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:16:22.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:16:22.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:16:22.178 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:16:22.178 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:16:22.178 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:16:22.178 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:16:22.178 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:16:22.178 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:16:22.188 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:16:22.188 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:16:22.198 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 02:16:22.198 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 02:16:22.198 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:16:22.248 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:16:22.548 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:16:22.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:16:22.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:16:22.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1109425880, 0x0, 559484976) start.
17-03-18 02:16:22.588 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:16:22.588 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 02:16:22.588 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 388 ms overall
17-03-18 02:16:22.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1109425880, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:16:22.668 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:22.668 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:16:22.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:16:22.688 -07 000000590 INF: Autofocus start
17-03-18 02:16:22.688 -07 000000590 INF: MeasureProfile start
17-03-18 02:16:22.688 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:16:22.688 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:16:22.698 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:16:22.698 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:16:22.698 -07 000000590 INF: MeasureProfile done
17-03-18 02:16:22.698 -07 000000590 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:16:22.698 -07 000000590 INF: Autofocus finished
17-03-18 02:16:22.898 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:16:22.898 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:16:22.898 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.13770727006674. ----------
17-03-18 02:16:22.898 -07 000000610 INF: Cycle	97	Tile	7	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:16:22.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28575, sync = True, waitForSettling = True)
17-03-18 02:16:22.908 -07 000000610 INF: Z Motor: Moving to -0.130808 mm, started at -0.137707 mm, distance = 6.90 um
17-03-18 02:16:22.908 -07 000000610 INF: FPGA: Xmit ZDACW 28575\n [Z Motor]
17-03-18 02:16:22.908 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:16:22.918 -07 000000610 INF: FPGA: 'ZDACW 28575' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:16:22.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:16:22.918 -07 000000579 INF: FPGA: Recv ZDACR 28575
17-03-18 02:16:22.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:22.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:16:23.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:23.078 -07 000000424 INF: FPGA: Recv ZSGSRD 29653
17-03-18 02:16:23.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:16:23.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:23.088 -07 000000569 INF: FPGA: Recv ZSGSRD 29650
17-03-18 02:16:23.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:23.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:23.098 -07 000000618 INF: FPGA: Recv ZSGSRD 29654
17-03-18 02:16:23.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:23.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:23.108 -07 000000444 INF: FPGA: Recv ZSGSRD 29656
17-03-18 02:16:23.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:23.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:23.118 -07 000000512 INF: FPGA: Recv ZSGSRD 29649
17-03-18 02:16:23.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:23.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:23.128 -07 000000501 INF: FPGA: Recv ZSGSRD 29652
17-03-18 02:16:23.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:23.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:23.138 -07 000000590 INF: FPGA: Recv ZSGSRD 29652
17-03-18 02:16:23.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:23.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:23.148 -07 000000462 INF: FPGA: Recv ZSGSRD 29655
17-03-18 02:16:23.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:23.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:23.158 -07 000000561 INF: FPGA: Recv ZSGSRD 29649
17-03-18 02:16:23.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:23.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:23.168 -07 000000502 INF: FPGA: Recv ZSGSRD 29654
17-03-18 02:16:23.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:23.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:16:23.178 -07 000000629 INF: FPGA: Recv ZPIEZORD 25180
17-03-18 02:16:23.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:23.188 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.360 V. Piezo Error = -9.8 V.
17-03-18 02:16:23.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29652 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29652 (-130.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29649 (-130.0 uncal um), Max = 29656 (-130.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:16:23.188 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29652, posNoise = 4, negNoise = 3
17-03-18 02:16:23.188 -07 000000610 INF: Z Motor: After move to -0.130808, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:16:23.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:16:23.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:16:23.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:16:23.188 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:16:23.188 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:16:23.188 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:16:23.188 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:16:23.188 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:16:23.188 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:16:23.188 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:16:23.188 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:16:23.188 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:16:23.188 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:16:23.198 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:16:23.198 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:16:23.198 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:16:23.198 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:16:23.208 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:16:23.208 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:16:23.208 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:16:23.208 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:16:23.208 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28752 150\n [Camera]
17-03-18 02:16:23.408 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:16:23.808 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:16:23.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:16:23.808 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:16:23.808 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:16:23.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:16:23.808 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:16:23.818 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:16:23.818 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 02:16:23.818 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:23.818 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 02:16:23.998 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28752 779
17-03-18 02:16:24.138 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:16:24.188 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 02:16:24.188 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 02:16:24.188 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:24.188 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 02:16:24.188 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 02:16:24.188 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:24.198 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:16:24.198 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:16:24.198 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:16:24.208 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:16:24.328 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:16:24.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:16:24.338 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:16:24.338 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:16:24.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:16:24.338 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:16:24.338 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:24.338 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:16:24.338 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:16:24.338 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 02:16:24.528 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-18 02:16:24.528 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:16:24.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28752 150' command took 2 ms to send, 1311 ms to get response, and 1318 ms overall
17-03-18 02:16:24.528 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:16:24.528 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.130814090438631. ------
17-03-18 02:16:24.528 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:16:24.528 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13738 mm
17-03-18 02:16:24.528 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:16:24.538 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 02:16:24.538 -07 000000561 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 02:16:24.538 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:24.538 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30011, sync = True, waitForSettling = False)
17-03-18 02:16:24.538 -07 000000618 INF: Z Motor: Moving to -0.137382 mm, started at -0.130814 mm, distance = -6.57 um
17-03-18 02:16:24.538 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:16:24.538 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:16:24.538 -07 000000569 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:16:24.548 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:16:24.548 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:16:24.548 -07 000000561 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:24.548 -07 000000561 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:16:24.548 -07 000000561 INF: Y Motor: Moving 1350 steps-28
17-03-18 02:16:24.558 -07 000000618 INF: FPGA: Xmit ZDACW 30011\n [Z Motor]
17-03-18 02:16:24.558 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:16:24.568 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:16:24.568 -07 000000618 INF: FPGA: 'ZDACW 30011' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:16:24.578 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:16:24.578 -07 000000579 INF: FPGA: Recv ZDACR 30011
17-03-18 02:16:24.588 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:16:24.588 -07 000000618 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 02:16:24.728 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 02:16:24.728 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:16:24.728 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:24.728 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 02:16:24.728 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:16:24.738 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:24.738 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:16:24.738 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:16:24.738 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:16:24.748 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 02:16:24.748 -07 000000430 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:16:24.748 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-18 02:16:24.938 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 02:16:24.938 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:16:24.988 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:24.988 -07 000000501 INF: FPGA: Recv YRDPOS 134582
17-03-18 02:16:24.998 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:16:24.998 -07 000000561 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:24.998 -07 000000561 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 02:16:24.998 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-18 02:16:25.848 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 3.977204,
17-03-18 02:16:25.948 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:25.948 -07 000000618 INF: FPGA: Recv YRDPOS 134583
17-03-18 02:16:25.958 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:16:25.958 -07 000000561 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:25.988 -07 000000561 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:16:25.988 -07 000000561 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:16:25.988 -07 000000561 INF: Y Motor: Moved to 65.7144 after 1449 ms (table move)
17-03-18 02:16:25.988 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137382 mm (DAC = 30011)
17-03-18 02:16:25.988 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:25.988 -07 000000444 INF: FPGA: Recv ZSGSRD 30678
17-03-18 02:16:25.998 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:16:25.998 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:25.998 -07 000000590 INF: FPGA: Recv ZSGSRD 30677
17-03-18 02:16:26.008 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:26.008 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:26.008 -07 000000579 INF: FPGA: Recv ZSGSRD 30678
17-03-18 02:16:26.018 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:26.018 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:26.018 -07 000000606 INF: FPGA: Recv ZSGSRD 30678
17-03-18 02:16:26.028 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:26.028 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:26.028 -07 000000512 INF: FPGA: Recv ZSGSRD 30677
17-03-18 02:16:26.038 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:26.038 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:26.038 -07 000000424 INF: FPGA: Recv ZSGSRD 30670
17-03-18 02:16:26.048 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:26.048 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:26.048 -07 000000569 INF: FPGA: Recv ZSGSRD 30682
17-03-18 02:16:26.058 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:26.058 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:26.058 -07 000000561 INF: FPGA: Recv ZSGSRD 30675
17-03-18 02:16:26.068 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:26.068 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:26.068 -07 000000606 INF: FPGA: Recv ZSGSRD 30671
17-03-18 02:16:26.078 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:26.078 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:26.078 -07 000000430 INF: FPGA: Recv ZSGSRD 30677
17-03-18 02:16:26.088 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:26.088 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:16:26.088 -07 000000576 INF: FPGA: Recv ZPIEZORD 26561
17-03-18 02:16:26.098 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:26.098 -07 000000591 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.579 V. Piezo Error = -9.1 V.
17-03-18 02:16:26.098 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30676 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30677 (-136.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30670 (-136.6 uncal um), Max = 30682 (-136.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:16:26.098 -07 000000591 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30676, posNoise = 6, negNoise = 6
17-03-18 02:16:26.098 -07 000000591 INF: Z Motor: After move to -0.137382, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:16:26.098 -07 000000591 INF: Z Motor: Settle wait time = 1453 ms, measure time = 106 ms (allowed 150 ms), total time = 1559 ms
17-03-18 02:16:26.098 -07 000000591 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:16:26.148 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 02:16:26.148 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:16:26.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:16:26.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:16:26.148 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:16:26.148 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:16:26.148 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:16:26.148 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:16:26.158 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:16:26.158 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:16:26.158 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:16:26.158 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:16:26.168 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:16:26.168 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:16:26.168 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:16:26.208 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:16:26.468 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:16:26.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:16:26.508 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:16:26.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:16:26.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:16:26.628 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:16:26.628 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 02:16:26.628 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 458 ms to get response, and 465 ms overall
17-03-18 02:16:26.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 02:16:26.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 02:16:26.748 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:26.748 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:16:26.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 240 ms.
17-03-18 02:16:26.828 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:16:26.828 -07 000000462 INF: Autofocus start
17-03-18 02:16:26.828 -07 000000462 INF: MeasureProfile start
17-03-18 02:16:26.828 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:16:26.838 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:16:26.838 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:16:26.838 -07 000000462 INF: MeasureProfile done
17-03-18 02:16:26.838 -07 000000462 INF: X=32  Z correction [um]=0.1299841
17-03-18 02:16:26.838 -07 000000462 INF: Autofocus finished
17-03-18 02:16:27.038 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:16:27.038 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:16:27.038 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.137392483671794. ----------
17-03-18 02:16:27.048 -07 000000610 INF: Cycle	97	Tile	8	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:16:27.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28552, sync = True, waitForSettling = True)
17-03-18 02:16:27.048 -07 000000610 INF: Z Motor: Moving to -0.130703 mm, started at -0.137392 mm, distance = 6.69 um
17-03-18 02:16:27.048 -07 000000610 INF: FPGA: Xmit ZDACW 28552\n [Z Motor]
17-03-18 02:16:27.048 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:16:27.058 -07 000000610 INF: FPGA: 'ZDACW 28552' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:16:27.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:16:27.058 -07 000000467 INF: FPGA: Recv ZDACR 28552
17-03-18 02:16:27.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:27.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:16:27.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:27.218 -07 000000590 INF: FPGA: Recv ZSGSRD 29636
17-03-18 02:16:27.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:16:27.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:27.228 -07 000000462 INF: FPGA: Recv ZSGSRD 29633
17-03-18 02:16:27.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:27.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:27.238 -07 000000576 INF: FPGA: Recv ZSGSRD 29639
17-03-18 02:16:27.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:27.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:27.248 -07 000000606 INF: FPGA: Recv ZSGSRD 29633
17-03-18 02:16:27.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:27.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:27.258 -07 000000461 INF: FPGA: Recv ZSGSRD 29631
17-03-18 02:16:27.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:27.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:27.268 -07 000000455 INF: FPGA: Recv ZSGSRD 29635
17-03-18 02:16:27.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:27.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:27.278 -07 000000462 INF: FPGA: Recv ZSGSRD 29633
17-03-18 02:16:27.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:27.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:27.288 -07 000000430 INF: FPGA: Recv ZSGSRD 29644
17-03-18 02:16:27.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:27.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:27.298 -07 000000579 INF: FPGA: Recv ZSGSRD 29632
17-03-18 02:16:27.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:27.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:27.308 -07 000000606 INF: FPGA: Recv ZSGSRD 29637
17-03-18 02:16:27.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:27.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:16:27.318 -07 000000461 INF: FPGA: Recv ZPIEZORD 25185
17-03-18 02:16:27.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:27.328 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.357 V. Piezo Error = -9.8 V.
17-03-18 02:16:27.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29635 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29634 (-129.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29631 (-129.9 uncal um), Max = 29644 (-130.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:16:27.328 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29635, posNoise = 9, negNoise = 4
17-03-18 02:16:27.328 -07 000000610 INF: Z Motor: After move to -0.130703, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:16:27.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:16:27.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:16:27.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:16:27.328 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:16:27.328 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:16:27.328 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:16:27.328 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:16:27.328 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:16:27.328 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:16:27.328 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:16:27.328 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:16:27.328 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:16:27.328 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:16:27.338 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:16:27.338 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:16:27.338 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:16:27.338 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:16:27.338 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:16:27.338 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:16:27.338 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:16:27.338 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:16:27.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28729 150\n [Camera]
17-03-18 02:16:27.548 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:16:27.938 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:16:27.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:16:27.938 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:16:27.948 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:16:27.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:16:27.948 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:16:27.948 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:27.948 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1088145512, 0x0, 418435064) start.
17-03-18 02:16:27.948 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:16:27.948 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:16:28.128 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28729 779
17-03-18 02:16:28.278 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:16:28.348 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1088145512, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 02:16:28.348 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:16:28.348 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:28.348 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:16:28.348 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:16:28.348 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:28.348 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:16:28.348 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:16:28.348 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 02:16:28.358 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:16:28.468 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:16:28.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:16:28.468 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:16:28.478 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:16:28.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:16:28.478 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:16:28.478 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:28.588 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:16:28.588 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:16:28.588 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 02:16:28.668 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:16:28.668 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:16:28.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28729 150' command took 2 ms to send, 1310 ms to get response, and 1317 ms overall
17-03-18 02:16:28.668 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:16:28.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.130704878832221. ------
17-03-18 02:16:28.668 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:16:28.668 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13714 mm
17-03-18 02:16:28.668 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:16:28.668 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 02:16:28.668 -07 000000626 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-18 02:16:28.668 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:16:28.668 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 29958, sync = True, waitForSettling = False)
17-03-18 02:16:28.668 -07 000000579 INF: Z Motor: Moving to -0.137139 mm, started at -0.130705 mm, distance = -6.43 um
17-03-18 02:16:28.678 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:16:28.678 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:16:28.688 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:28.688 -07 000000618 INF: FPGA: Recv YRDPOS 134583
17-03-18 02:16:28.698 -07 000000579 INF: FPGA: Xmit ZDACW 29958\n [Z Motor]
17-03-18 02:16:28.698 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:16:28.698 -07 000000626 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:28.698 -07 000000626 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:16:28.698 -07 000000626 INF: Y Motor: Moving 1341 steps-18
17-03-18 02:16:28.698 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:16:28.708 -07 000000579 INF: FPGA: 'ZDACW 29958' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 02:16:28.708 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:16:28.708 -07 000000606 INF: FPGA: Recv ZDACR 29958
17-03-18 02:16:28.718 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:16:28.718 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:28.718 -07 000000579 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 02:16:28.878 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:16:28.878 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:16:28.978 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 02:16:28.978 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 502 ms.
17-03-18 02:16:28.978 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:28.978 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:16:28.988 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:16:28.988 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:16:28.988 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:28.988 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:16:28.988 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms.
17-03-18 02:16:28.988 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 513 ms.
17-03-18 02:16:29.088 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 02:16:29.088 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:16:29.138 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:29.138 -07 000000461 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:16:29.148 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:16:29.148 -07 000000626 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:29.148 -07 000000626 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:16:29.148 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-18 02:16:30.098 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:30.098 -07 000000590 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:16:30.108 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:16:30.108 -07 000000626 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:30.128 -07 000000626 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:16:30.138 -07 000000626 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:16:30.138 -07 000000626 INF: Y Motor: Moved to 66.5391 after 1461 ms (table move)
17-03-18 02:16:30.138 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137139 mm (DAC = 29958)
17-03-18 02:16:30.138 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:30.138 -07 000000629 INF: FPGA: Recv ZSGSRD 30649
17-03-18 02:16:30.148 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:16:30.148 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:30.148 -07 000000444 INF: FPGA: Recv ZSGSRD 30644
17-03-18 02:16:30.158 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:30.158 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:30.158 -07 000000579 INF: FPGA: Recv ZSGSRD 30628
17-03-18 02:16:30.168 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:30.168 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:30.168 -07 000000424 INF: FPGA: Recv ZSGSRD 30641
17-03-18 02:16:30.178 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:30.178 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:30.178 -07 000000430 INF: FPGA: Recv ZSGSRD 30640
17-03-18 02:16:30.188 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:30.188 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:30.188 -07 000000629 INF: FPGA: Recv ZSGSRD 30629
17-03-18 02:16:30.198 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:30.198 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:30.198 -07 000000444 INF: FPGA: Recv ZSGSRD 30638
17-03-18 02:16:30.208 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:30.208 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:30.208 -07 000000461 INF: FPGA: Recv ZSGSRD 30634
17-03-18 02:16:30.218 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:30.218 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:30.218 -07 000000590 INF: FPGA: Recv ZSGSRD 30638
17-03-18 02:16:30.228 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:30.228 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:30.228 -07 000000430 INF: FPGA: Recv ZSGSRD 30641
17-03-18 02:16:30.238 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:30.238 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:16:30.238 -07 000000467 INF: FPGA: Recv ZPIEZORD 26520
17-03-18 02:16:30.248 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:30.248 -07 000000561 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.571 V. Piezo Error = -9.1 V.
17-03-18 02:16:30.248 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30638 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30639 (-136.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30628 (-136.3 uncal um), Max = 30649 (-136.4 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 02:16:30.248 -07 000000561 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30638, posNoise = 11, negNoise = 10
17-03-18 02:16:30.248 -07 000000561 INF: Z Motor: After move to -0.137139, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:16:30.248 -07 000000561 INF: Z Motor: Settle wait time = 1464 ms, measure time = 107 ms (allowed 150 ms), total time = 1571 ms
17-03-18 02:16:30.248 -07 000000561 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:16:30.298 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 02:16:30.298 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:16:30.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:16:30.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:16:30.298 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:16:30.298 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:16:30.298 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:16:30.298 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:16:30.298 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:16:30.298 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:16:30.308 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:16:30.308 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:16:30.318 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:16:30.318 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:16:30.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:16:30.368 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:16:30.668 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:16:30.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:16:30.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:16:30.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 613074248, 0x0, 559484976) start.
17-03-18 02:16:30.708 -07 000000591 INF: FPGA: Recv @CAMSNAP 381
17-03-18 02:16:30.708 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 02:16:30.708 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 384 ms to get response, and 386 ms overall
17-03-18 02:16:30.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 613074248, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:16:30.788 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:30.788 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:16:30.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:16:30.808 -07 000000579 INF: Autofocus start
17-03-18 02:16:30.808 -07 000000579 INF: MeasureProfile start
17-03-18 02:16:30.808 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:16:30.808 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:16:30.818 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:16:30.818 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:16:30.818 -07 000000579 INF: MeasureProfile done
17-03-18 02:16:30.818 -07 000000579 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 02:16:30.818 -07 000000579 INF: Autofocus finished
17-03-18 02:16:31.018 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:16:31.018 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:16:31.018 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.137148363610407. ----------
17-03-18 02:16:31.018 -07 000000610 INF: Cycle	97	Tile	9	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:16:31.028 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28436, sync = True, waitForSettling = True)
17-03-18 02:16:31.028 -07 000000610 INF: Z Motor: Moving to -0.130172 mm, started at -0.137148 mm, distance = 6.98 um
17-03-18 02:16:31.028 -07 000000610 INF: FPGA: Xmit ZDACW 28436\n [Z Motor]
17-03-18 02:16:31.028 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:16:31.038 -07 000000610 INF: FPGA: 'ZDACW 28436' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:31.038 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:16:31.038 -07 000000444 INF: FPGA: Recv ZDACR 28436
17-03-18 02:16:31.048 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:31.048 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:16:31.208 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 3.959467,
17-03-18 02:16:31.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:31.218 -07 000000512 INF: FPGA: Recv ZSGSRD 29551
17-03-18 02:16:31.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:16:31.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:31.228 -07 000000579 INF: FPGA: Recv ZSGSRD 29552
17-03-18 02:16:31.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:31.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:31.258 -07 000000591 INF: FPGA: Recv ZSGSRD 29553
17-03-18 02:16:31.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:16:31.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:31.278 -07 000000444 INF: FPGA: Recv ZSGSRD 29553
17-03-18 02:16:31.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:16:31.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:31.288 -07 000000618 INF: FPGA: Recv ZSGSRD 29547
17-03-18 02:16:31.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:31.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:31.298 -07 000000606 INF: FPGA: Recv ZSGSRD 29555
17-03-18 02:16:31.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:31.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:31.308 -07 000000561 INF: FPGA: Recv ZSGSRD 29551
17-03-18 02:16:31.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:31.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:31.318 -07 000000626 INF: FPGA: Recv ZSGSRD 29550
17-03-18 02:16:31.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:31.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:31.328 -07 000000569 INF: FPGA: Recv ZSGSRD 29551
17-03-18 02:16:31.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:31.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:31.338 -07 000000629 INF: FPGA: Recv ZSGSRD 29553
17-03-18 02:16:31.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:31.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:16:31.348 -07 000000461 INF: FPGA: Recv ZPIEZORD 25092
17-03-18 02:16:31.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:31.358 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.339 V. Piezo Error = -9.8 V.
17-03-18 02:16:31.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29552 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29552 (-129.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29547 (-129.4 uncal um), Max = 29555 (-129.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:16:31.358 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29552, posNoise = 3, negNoise = 5
17-03-18 02:16:31.358 -07 000000610 INF: Z Motor: After move to -0.130172, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:16:31.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms)
17-03-18 02:16:31.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:16:31.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:16:31.358 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:16:31.358 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:16:31.358 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:16:31.358 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:16:31.358 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:16:31.358 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:16:31.358 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:16:31.358 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:16:31.358 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:16:31.358 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:16:31.358 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:16:31.358 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:16:31.368 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:16:31.368 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:16:31.368 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:16:31.368 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:16:31.368 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:16:31.368 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:16:31.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28612 150\n [Camera]
17-03-18 02:16:31.468 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:16:31.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:16:31.578 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:16:31.968 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:16:31.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:16:31.978 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:16:31.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:16:31.978 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:16:31.978 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:16:31.978 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:31.978 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:16:31.988 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:16:31.988 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1082280040, 0x0, 391868352) start.
17-03-18 02:16:32.168 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28612 779
17-03-18 02:16:32.308 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:16:32.348 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:16:32.348 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:16:32.348 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:32.358 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:16:32.358 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:16:32.358 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1082280040, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 02:16:32.358 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 02:16:32.368 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:32.368 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:16:32.368 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:16:32.498 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:16:32.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:16:32.508 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:16:32.508 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:16:32.508 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 02:16:32.508 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:16:32.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:16:32.508 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:16:32.508 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:32.508 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 02:16:32.698 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:16:32.698 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:16:32.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28612 150' command took 2 ms to send, 1311 ms to get response, and 1318 ms overall
17-03-18 02:16:32.698 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:16:32.698 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.130171669224455. ------
17-03-18 02:16:32.698 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:16:32.698 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13696 mm
17-03-18 02:16:32.698 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:16:32.708 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 02:16:32.708 -07 000000424 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 02:16:32.708 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:32.708 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29918, sync = True, waitForSettling = False)
17-03-18 02:16:32.708 -07 000000576 INF: Z Motor: Moving to -0.136956 mm, started at -0.130172 mm, distance = -6.78 um
17-03-18 02:16:32.708 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:16:32.708 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-18 02:16:32.708 -07 000000569 INF: FPGA: Recv YRDPOS 136273
17-03-18 02:16:32.718 -07 000000576 INF: FPGA: Xmit ZDACW 29918\n [Z Motor]
17-03-18 02:16:32.718 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:32.718 -07 000000424 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:32.718 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:16:32.718 -07 000000424 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:16:32.718 -07 000000424 INF: Y Motor: Moving 1349 steps-28
17-03-18 02:16:32.728 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:16:32.728 -07 000000576 INF: FPGA: 'ZDACW 29918' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:16:32.738 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:16:32.748 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:16:32.748 -07 000000455 INF: FPGA: Recv ZDACR 29918
17-03-18 02:16:32.758 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:16:32.758 -07 000000576 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 02:16:32.898 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 02:16:32.898 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:16:32.898 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:32.898 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 02:16:32.898 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:16:32.898 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:32.898 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:16:32.898 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 02:16:32.898 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:16:32.908 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:16:32.928 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:16:32.928 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 218 ms overall
17-03-18 02:16:33.108 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 02:16:33.108 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 02:16:33.158 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:33.158 -07 000000455 INF: FPGA: Recv YRDPOS 137978
17-03-18 02:16:33.168 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:16:33.168 -07 000000424 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:33.168 -07 000000424 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 02:16:33.168 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.146 mm/sec
17-03-18 02:16:34.118 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:34.118 -07 000000626 INF: FPGA: Recv YRDPOS 137978
17-03-18 02:16:34.128 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:16:34.128 -07 000000424 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:34.148 -07 000000424 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:16:34.148 -07 000000424 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:16:34.148 -07 000000424 INF: Y Motor: Moved to 67.3721 after 1448 ms (table move)
17-03-18 02:16:34.158 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136956 mm (DAC = 29918)
17-03-18 02:16:34.158 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:34.158 -07 000000461 INF: FPGA: Recv ZSGSRD 30616
17-03-18 02:16:34.168 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:16:34.168 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:34.168 -07 000000569 INF: FPGA: Recv ZSGSRD 30607
17-03-18 02:16:34.178 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:34.178 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:34.178 -07 000000424 INF: FPGA: Recv ZSGSRD 30614
17-03-18 02:16:34.188 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:34.188 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:34.188 -07 000000618 INF: FPGA: Recv ZSGSRD 30604
17-03-18 02:16:34.198 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:34.198 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:34.198 -07 000000576 INF: FPGA: Recv ZSGSRD 30615
17-03-18 02:16:34.208 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:34.208 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:34.208 -07 000000461 INF: FPGA: Recv ZSGSRD 30611
17-03-18 02:16:34.218 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:34.218 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:34.218 -07 000000569 INF: FPGA: Recv ZSGSRD 30606
17-03-18 02:16:34.228 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:34.228 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:34.228 -07 000000424 INF: FPGA: Recv ZSGSRD 30606
17-03-18 02:16:34.238 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:34.238 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:34.238 -07 000000618 INF: FPGA: Recv ZSGSRD 30607
17-03-18 02:16:34.248 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:34.248 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:34.248 -07 000000576 INF: FPGA: Recv ZSGSRD 30615
17-03-18 02:16:34.258 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:34.258 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:16:34.258 -07 000000461 INF: FPGA: Recv ZPIEZORD 26471
17-03-18 02:16:34.268 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:34.268 -07 000000467 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.565 V. Piezo Error = -9.1 V.
17-03-18 02:16:34.268 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30610 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30609 (-136.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30604 (-136.1 uncal um), Max = 30616 (-136.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:16:34.268 -07 000000467 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30610, posNoise = 6, negNoise = 6
17-03-18 02:16:34.268 -07 000000467 INF: Z Motor: After move to -0.136956, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:16:34.268 -07 000000467 INF: Z Motor: Settle wait time = 1453 ms, measure time = 106 ms (allowed 150 ms), total time = 1559 ms
17-03-18 02:16:34.268 -07 000000467 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:16:34.318 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 02:16:34.318 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:16:34.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:16:34.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:16:34.318 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:16:34.318 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:16:34.318 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:16:34.318 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:16:34.318 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:16:34.318 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:16:34.328 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:16:34.328 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:16:34.328 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:16:34.328 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:16:34.338 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:16:34.378 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:16:34.678 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:16:34.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:16:34.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:16:34.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1117702304, 0x0, 559484976) start.
17-03-18 02:16:34.718 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:16:34.718 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 02:16:34.718 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:16:34.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1117702304, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:16:34.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:34.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:16:34.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:16:34.818 -07 000000502 INF: Autofocus start
17-03-18 02:16:34.818 -07 000000502 INF: MeasureProfile start
17-03-18 02:16:34.818 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:16:34.818 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:16:34.828 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:16:34.828 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:16:34.828 -07 000000502 INF: MeasureProfile done
17-03-18 02:16:34.828 -07 000000502 INF: X=32  Z correction [um]=0.1299841
17-03-18 02:16:34.828 -07 000000502 INF: Autofocus finished
17-03-18 02:16:35.028 -07 000000430 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:16:35.028 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:16:35.028 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.136968485670438. ----------
17-03-18 02:16:35.028 -07 000000610 INF: Cycle	97	Tile	10	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:16:35.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28459, sync = True, waitForSettling = True)
17-03-18 02:16:35.038 -07 000000610 INF: Z Motor: Moving to -0.130277 mm, started at -0.136968 mm, distance = 6.69 um
17-03-18 02:16:35.038 -07 000000610 INF: FPGA: Xmit ZDACW 28459\n [Z Motor]
17-03-18 02:16:35.038 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:16:35.048 -07 000000610 INF: FPGA: 'ZDACW 28459' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:16:35.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:16:35.048 -07 000000462 INF: FPGA: Recv ZDACR 28459
17-03-18 02:16:35.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:35.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:16:35.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:35.208 -07 000000455 INF: FPGA: Recv ZSGSRD 29572
17-03-18 02:16:35.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:16:35.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:35.218 -07 000000629 INF: FPGA: Recv ZSGSRD 29575
17-03-18 02:16:35.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:35.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:35.228 -07 000000591 INF: FPGA: Recv ZSGSRD 29563
17-03-18 02:16:35.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:35.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:35.238 -07 000000424 INF: FPGA: Recv ZSGSRD 29566
17-03-18 02:16:35.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:35.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:35.248 -07 000000444 INF: FPGA: Recv ZSGSRD 29573
17-03-18 02:16:35.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:35.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:35.258 -07 000000455 INF: FPGA: Recv ZSGSRD 29574
17-03-18 02:16:35.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:35.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:35.268 -07 000000467 INF: FPGA: Recv ZSGSRD 29567
17-03-18 02:16:35.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:35.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:35.278 -07 000000561 INF: FPGA: Recv ZSGSRD 29564
17-03-18 02:16:35.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:35.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:35.288 -07 000000424 INF: FPGA: Recv ZSGSRD 29572
17-03-18 02:16:35.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:35.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:35.298 -07 000000618 INF: FPGA: Recv ZSGSRD 29569
17-03-18 02:16:35.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:35.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:16:35.308 -07 000000455 INF: FPGA: Recv ZPIEZORD 25112
17-03-18 02:16:35.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:35.318 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.343 V. Piezo Error = -9.8 V.
17-03-18 02:16:35.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29570 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29570 (-129.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29563 (-129.5 uncal um), Max = 29575 (-129.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:16:35.318 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29570, posNoise = 5, negNoise = 7
17-03-18 02:16:35.318 -07 000000610 INF: Z Motor: After move to -0.130277, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:16:35.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:16:35.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:16:35.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:16:35.318 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:16:35.318 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:16:35.318 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:16:35.318 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:16:35.318 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:16:35.318 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:16:35.318 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:16:35.318 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:16:35.318 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:16:35.318 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:16:35.328 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:16:35.328 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:16:35.328 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:16:35.328 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:16:35.338 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:16:35.338 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:16:35.338 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:16:35.338 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:16:35.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28636 150\n [Camera]
17-03-18 02:16:35.538 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:16:35.938 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:16:35.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:16:35.938 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:16:35.938 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:16:35.938 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:16:35.938 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:16:35.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:16:35.938 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:16:35.938 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:35.938 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:16:36.128 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28636 779
17-03-18 02:16:36.288 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:16:36.328 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 02:16:36.328 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:16:36.328 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:36.328 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 02:16:36.328 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:16:36.328 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:36.338 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:16:36.338 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:16:36.338 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:16:36.348 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:16:36.468 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:16:36.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:16:36.468 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:16:36.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:16:36.468 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:16:36.468 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:16:36.468 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:16:36.468 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:16:36.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:16:36.478 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:16:36.478 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:36.478 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:16:36.598 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 4.003063,
17-03-18 02:16:36.658 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-18 02:16:36.658 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:16:36.658 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28636 150' command took 2 ms to send, 1308 ms to get response, and 1318 ms overall
17-03-18 02:16:36.668 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:16:36.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.130287305043007. ------
17-03-18 02:16:36.668 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13661 mm
17-03-18 02:16:36.668 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:16:36.668 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:16:36.668 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 02:16:36.668 -07 000000590 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 02:16:36.668 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 29843, sync = True, waitForSettling = False)
17-03-18 02:16:36.668 -07 000000606 INF: Z Motor: Moving to -0.136612 mm, started at -0.130287 mm, distance = -6.33 um
17-03-18 02:16:36.678 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:16:36.678 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:16:36.678 -07 000000606 INF: FPGA: Xmit ZDACW 29843\n [Z Motor]
17-03-18 02:16:36.678 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:16:36.688 -07 000000606 INF: FPGA: 'ZDACW 29843' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:16:36.688 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:36.688 -07 000000424 INF: FPGA: Recv YRDPOS 137978
17-03-18 02:16:36.698 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:16:36.698 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 02:16:36.698 -07 000000590 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:36.698 -07 000000590 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:16:36.698 -07 000000590 INF: Y Motor: Moving 1345 steps-22
17-03-18 02:16:36.708 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:16:36.708 -07 000000579 INF: FPGA: Recv ZDACR 29843
17-03-18 02:16:36.718 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:16:36.718 -07 000000606 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 02:16:36.718 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:16:36.858 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 02:16:36.858 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:16:36.858 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:36.858 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 02:16:36.858 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:16:36.858 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:36.868 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:16:36.868 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:16:36.868 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:16:36.868 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:16:36.898 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:16:36.898 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:16:37.088 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 02:16:37.088 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:16:37.138 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:37.138 -07 000000444 INF: FPGA: Recv YRDPOS 139685
17-03-18 02:16:37.148 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:16:37.148 -07 000000590 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:37.148 -07 000000590 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 02:16:37.148 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.117 mm/sec
17-03-18 02:16:38.098 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:38.098 -07 000000561 INF: FPGA: Recv YRDPOS 139685
17-03-18 02:16:38.108 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:38.108 -07 000000590 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:38.128 -07 000000590 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:16:38.128 -07 000000590 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:16:38.128 -07 000000590 INF: Y Motor: Moved to 68.2056 after 1457 ms (table move)
17-03-18 02:16:38.138 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136612 mm (DAC = 29843)
17-03-18 02:16:38.138 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:38.138 -07 000000467 INF: FPGA: Recv ZSGSRD 30561
17-03-18 02:16:38.148 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:38.148 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:38.148 -07 000000561 INF: FPGA: Recv ZSGSRD 30561
17-03-18 02:16:38.158 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:38.158 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:38.158 -07 000000501 INF: FPGA: Recv ZSGSRD 30558
17-03-18 02:16:38.168 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:38.168 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:38.168 -07 000000444 INF: FPGA: Recv ZSGSRD 30552
17-03-18 02:16:38.178 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:38.178 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:38.178 -07 000000629 INF: FPGA: Recv ZSGSRD 30549
17-03-18 02:16:38.188 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:38.188 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:38.188 -07 000000502 INF: FPGA: Recv ZSGSRD 30554
17-03-18 02:16:38.198 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:38.198 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:38.198 -07 000000618 INF: FPGA: Recv ZSGSRD 30551
17-03-18 02:16:38.208 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:38.208 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:38.208 -07 000000430 INF: FPGA: Recv ZSGSRD 30554
17-03-18 02:16:38.218 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:38.218 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:38.218 -07 000000569 INF: FPGA: Recv ZSGSRD 30559
17-03-18 02:16:38.228 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:38.228 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:38.228 -07 000000561 INF: FPGA: Recv ZSGSRD 30558
17-03-18 02:16:38.238 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:38.238 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:16:38.238 -07 000000502 INF: FPGA: Recv ZPIEZORD 26408
17-03-18 02:16:38.248 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:38.248 -07 000000455 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.554 V. Piezo Error = -9.1 V.
17-03-18 02:16:38.248 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30556 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30556 (-135.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30549 (-135.8 uncal um), Max = 30561 (-135.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:16:38.248 -07 000000455 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30556, posNoise = 5, negNoise = 7
17-03-18 02:16:38.248 -07 000000455 INF: Z Motor: After move to -0.136612, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:16:38.248 -07 000000455 INF: Z Motor: Settle wait time = 1460 ms, measure time = 111 ms (allowed 150 ms), total time = 1571 ms
17-03-18 02:16:38.248 -07 000000455 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 02:16:38.288 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 02:16:38.288 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:16:38.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:16:38.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:16:38.288 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:16:38.288 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:16:38.288 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:16:38.298 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:16:38.298 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:16:38.298 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:16:38.298 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:16:38.298 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:16:38.308 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:16:38.308 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:16:38.308 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:16:38.358 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:16:38.658 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:16:38.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:16:38.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:16:38.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 02:16:38.698 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:16:38.698 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 02:16:38.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 02:16:38.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:16:38.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:38.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:16:38.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:16:38.798 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:16:38.798 -07 000000590 INF: Autofocus start
17-03-18 02:16:38.798 -07 000000590 INF: MeasureProfile start
17-03-18 02:16:38.798 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:16:38.808 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:16:38.808 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:16:38.808 -07 000000590 INF: MeasureProfile done
17-03-18 02:16:38.818 -07 000000590 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:16:38.818 -07 000000590 INF: Autofocus finished
17-03-18 02:16:39.008 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:16:39.008 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-18 02:16:39.008 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.136621578214783. ----------
17-03-18 02:16:39.018 -07 000000610 INF: Cycle	97	Tile	11	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:16:39.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28350, sync = True, waitForSettling = True)
17-03-18 02:16:39.018 -07 000000610 INF: Z Motor: Moving to -0.129778 mm, started at -0.136622 mm, distance = 6.84 um
17-03-18 02:16:39.018 -07 000000610 INF: FPGA: Xmit ZDACW 28350\n [Z Motor]
17-03-18 02:16:39.018 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:16:39.028 -07 000000610 INF: FPGA: 'ZDACW 28350' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:16:39.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:16:39.028 -07 000000424 INF: FPGA: Recv ZDACR 28350
17-03-18 02:16:39.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:39.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:16:39.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:39.188 -07 000000467 INF: FPGA: Recv ZSGSRD 29490
17-03-18 02:16:39.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:16:39.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:39.198 -07 000000579 INF: FPGA: Recv ZSGSRD 29488
17-03-18 02:16:39.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:39.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:39.208 -07 000000462 INF: FPGA: Recv ZSGSRD 29493
17-03-18 02:16:39.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:39.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:39.218 -07 000000606 INF: FPGA: Recv ZSGSRD 29499
17-03-18 02:16:39.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:39.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:39.228 -07 000000461 INF: FPGA: Recv ZSGSRD 29490
17-03-18 02:16:39.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:39.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:39.238 -07 000000467 INF: FPGA: Recv ZSGSRD 29494
17-03-18 02:16:39.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:39.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:39.248 -07 000000590 INF: FPGA: Recv ZSGSRD 29491
17-03-18 02:16:39.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:39.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:39.258 -07 000000444 INF: FPGA: Recv ZSGSRD 29491
17-03-18 02:16:39.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:39.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:39.268 -07 000000618 INF: FPGA: Recv ZSGSRD 29494
17-03-18 02:16:39.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:39.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:39.278 -07 000000569 INF: FPGA: Recv ZSGSRD 29488
17-03-18 02:16:39.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:39.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:16:39.288 -07 000000629 INF: FPGA: Recv ZPIEZORD 25021
17-03-18 02:16:39.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:39.298 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.326 V. Piezo Error = -9.8 V.
17-03-18 02:16:39.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29492 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29491 (-129.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29488 (-129.0 uncal um), Max = 29499 (-129.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:16:39.298 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29492, posNoise = 7, negNoise = 4
17-03-18 02:16:39.298 -07 000000610 INF: Z Motor: After move to -0.129778, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:16:39.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:16:39.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:16:39.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:16:39.298 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:16:39.298 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:16:39.298 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:16:39.298 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:16:39.298 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:16:39.298 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:16:39.298 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:16:39.298 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:16:39.298 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:16:39.298 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:16:39.308 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:16:39.308 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:16:39.308 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:16:39.308 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:16:39.318 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:16:39.318 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:16:39.318 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:16:39.318 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:16:39.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28527 150\n [Camera]
17-03-18 02:16:39.518 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:16:39.908 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:16:39.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:16:39.908 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:16:39.908 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:16:39.908 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 02:16:39.918 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:16:39.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:16:39.918 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:16:39.918 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:39.918 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 02:16:40.108 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28527 779
17-03-18 02:16:40.248 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:16:40.308 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 02:16:40.308 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:16:40.308 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:40.308 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 02:16:40.318 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:16:40.318 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:40.318 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:16:40.318 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:16:40.318 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:16:40.328 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:16:40.438 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:16:40.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:16:40.448 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:16:40.448 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:16:40.448 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 02:16:40.448 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:16:40.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:16:40.448 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:16:40.448 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:40.448 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 02:16:40.638 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:16:40.638 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:16:40.638 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28527 150' command took 2 ms to send, 1311 ms to get response, and 1317 ms overall
17-03-18 02:16:40.638 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:16:40.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.129786216495949. ------
17-03-18 02:16:40.638 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:16:40.638 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13653 mm
17-03-18 02:16:40.638 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:16:40.638 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 02:16:40.638 -07 000000501 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-18 02:16:40.648 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:16:40.648 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:16:40.648 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:40.648 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29825, sync = True, waitForSettling = False)
17-03-18 02:16:40.648 -07 000000626 INF: Z Motor: Moving to -0.136530 mm, started at -0.129786 mm, distance = -6.74 um
17-03-18 02:16:40.648 -07 000000462 INF: FPGA: Recv YRDPOS 139685
17-03-18 02:16:40.658 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:16:40.658 -07 000000501 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:40.658 -07 000000501 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:16:40.658 -07 000000501 INF: Y Motor: Moving 1339 steps-14
17-03-18 02:16:40.658 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:16:40.668 -07 000000626 INF: FPGA: Xmit ZDACW 29825\n [Z Motor]
17-03-18 02:16:40.668 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 02:16:40.678 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:16:40.678 -07 000000626 INF: FPGA: 'ZDACW 29825' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:16:40.688 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:16:40.688 -07 000000618 INF: FPGA: Recv ZDACR 29825
17-03-18 02:16:40.698 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:16:40.698 -07 000000626 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 02:16:40.848 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 02:16:40.848 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:16:40.848 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:40.848 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:16:40.848 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:16:40.848 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:40.848 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:16:40.858 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:16:40.858 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 02:16:40.858 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:16:40.858 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 210 ms overall
17-03-18 02:16:40.858 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:16:41.048 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 02:16:41.048 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:16:41.098 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:41.098 -07 000000430 INF: FPGA: Recv YRDPOS 141368
17-03-18 02:16:41.108 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:16:41.108 -07 000000501 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:41.108 -07 000000501 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 02:16:41.108 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.108 mm/sec
17-03-18 02:16:41.468 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:16:41.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:16:41.958 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 3.999021,
17-03-18 02:16:42.058 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:42.058 -07 000000455 INF: FPGA: Recv YRDPOS 141368
17-03-18 02:16:42.068 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:16:42.068 -07 000000501 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:42.088 -07 000000501 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:16:42.088 -07 000000501 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:16:42.088 -07 000000501 INF: Y Motor: Moved to 69.0273 after 1448 ms (table move)
17-03-18 02:16:42.098 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136530 mm (DAC = 29825)
17-03-18 02:16:42.098 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:42.098 -07 000000502 INF: FPGA: Recv ZSGSRD 30541
17-03-18 02:16:42.108 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:42.108 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:42.108 -07 000000455 INF: FPGA: Recv ZSGSRD 30539
17-03-18 02:16:42.118 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:42.118 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:42.118 -07 000000430 INF: FPGA: Recv ZSGSRD 30545
17-03-18 02:16:42.128 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:42.128 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:42.128 -07 000000461 INF: FPGA: Recv ZSGSRD 30543
17-03-18 02:16:42.138 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:42.138 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:42.138 -07 000000501 INF: FPGA: Recv ZSGSRD 30540
17-03-18 02:16:42.148 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:42.148 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:42.148 -07 000000569 INF: FPGA: Recv ZSGSRD 30537
17-03-18 02:16:42.158 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:42.158 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:42.158 -07 000000462 INF: FPGA: Recv ZSGSRD 30540
17-03-18 02:16:42.168 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:42.168 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:42.168 -07 000000629 INF: FPGA: Recv ZSGSRD 30540
17-03-18 02:16:42.178 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:42.178 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:42.178 -07 000000461 INF: FPGA: Recv ZSGSRD 30548
17-03-18 02:16:42.188 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:42.188 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:42.188 -07 000000501 INF: FPGA: Recv ZSGSRD 30541
17-03-18 02:16:42.198 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:42.198 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:16:42.198 -07 000000618 INF: FPGA: Recv ZPIEZORD 26431
17-03-18 02:16:42.208 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:42.208 -07 000000512 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.551 V. Piezo Error = -9.0 V.
17-03-18 02:16:42.208 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30541 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30540 (-135.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30537 (-135.7 uncal um), Max = 30548 (-135.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:16:42.208 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30541, posNoise = 7, negNoise = 4
17-03-18 02:16:42.208 -07 000000512 INF: Z Motor: After move to -0.136530, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:16:42.208 -07 000000512 INF: Z Motor: Settle wait time = 1447 ms, measure time = 109 ms (allowed 150 ms), total time = 1556 ms
17-03-18 02:16:42.208 -07 000000512 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:16:42.258 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 02:16:42.258 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:16:42.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:16:42.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:16:42.258 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:16:42.258 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:16:42.258 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:16:42.258 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:16:42.258 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:16:42.258 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:16:42.268 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:16:42.268 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:16:42.268 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:16:42.268 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:16:42.278 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:16:42.318 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:16:42.618 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:16:42.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:16:42.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:16:42.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-18 02:16:42.658 -07 000000569 INF: FPGA: Recv @CAMSNAP 383
17-03-18 02:16:42.658 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 02:16:42.658 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall
17-03-18 02:16:42.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:16:42.738 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:42.738 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:16:42.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:16:42.758 -07 000000512 INF: Autofocus start
17-03-18 02:16:42.758 -07 000000512 INF: MeasureProfile start
17-03-18 02:16:42.758 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:16:42.768 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:16:42.768 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:16:42.768 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:16:42.768 -07 000000512 INF: MeasureProfile done
17-03-18 02:16:42.768 -07 000000512 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:16:42.768 -07 000000512 INF: Autofocus finished
17-03-18 02:16:42.968 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:16:42.968 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:16:42.968 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.136525215032656. ----------
17-03-18 02:16:42.968 -07 000000610 INF: Cycle	97	Tile	12	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:16:42.978 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28332, sync = True, waitForSettling = True)
17-03-18 02:16:42.978 -07 000000610 INF: Z Motor: Moving to -0.129696 mm, started at -0.136525 mm, distance = 6.83 um
17-03-18 02:16:42.978 -07 000000610 INF: FPGA: Xmit ZDACW 28332\n [Z Motor]
17-03-18 02:16:42.978 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:16:42.988 -07 000000610 INF: FPGA: 'ZDACW 28332' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:42.988 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:16:42.988 -07 000000590 INF: FPGA: Recv ZDACR 28332
17-03-18 02:16:42.998 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:42.998 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:16:43.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:43.148 -07 000000576 INF: FPGA: Recv ZSGSRD 29479
17-03-18 02:16:43.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:16:43.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:43.158 -07 000000501 INF: FPGA: Recv ZSGSRD 29481
17-03-18 02:16:43.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:43.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:43.168 -07 000000461 INF: FPGA: Recv ZSGSRD 29480
17-03-18 02:16:43.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:43.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:43.178 -07 000000629 INF: FPGA: Recv ZSGSRD 29480
17-03-18 02:16:43.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:43.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:43.188 -07 000000462 INF: FPGA: Recv ZSGSRD 29475
17-03-18 02:16:43.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:43.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:43.198 -07 000000430 INF: FPGA: Recv ZSGSRD 29478
17-03-18 02:16:43.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:43.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:43.208 -07 000000467 INF: FPGA: Recv ZSGSRD 29478
17-03-18 02:16:43.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:43.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:43.218 -07 000000444 INF: FPGA: Recv ZSGSRD 29479
17-03-18 02:16:43.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:43.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:43.228 -07 000000626 INF: FPGA: Recv ZSGSRD 29478
17-03-18 02:16:43.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:43.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:43.238 -07 000000590 INF: FPGA: Recv ZSGSRD 29477
17-03-18 02:16:43.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:43.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:16:43.248 -07 000000569 INF: FPGA: Recv ZPIEZORD 25013
17-03-18 02:16:43.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:43.258 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.323 V. Piezo Error = -9.8 V.
17-03-18 02:16:43.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29478 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29478 (-128.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29475 (-128.9 uncal um), Max = 29481 (-128.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:16:43.258 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29478, posNoise = 3, negNoise = 3
17-03-18 02:16:43.258 -07 000000610 INF: Z Motor: After move to -0.129696, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:16:43.258 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:16:43.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:16:43.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:16:43.258 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:16:43.258 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:16:43.258 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:16:43.258 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:16:43.258 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:16:43.258 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:16:43.258 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:16:43.258 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:16:43.258 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 02:16:43.258 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:16:43.268 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:16:43.268 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:16:43.268 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:16:43.268 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:16:43.278 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:16:43.278 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:16:43.278 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:16:43.278 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:16:43.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28509 150\n [Camera]
17-03-18 02:16:43.478 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:16:43.878 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:16:43.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:16:43.878 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:16:43.878 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:16:43.878 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 02:16:43.878 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:16:43.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:16:43.878 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:16:43.878 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:43.878 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 02:16:44.068 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28509 779
17-03-18 02:16:44.218 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:16:44.268 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 02:16:44.268 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:16:44.268 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:44.268 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 02:16:44.268 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 02:16:44.268 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:44.268 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:16:44.268 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:16:44.268 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:16:44.278 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:16:44.408 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:16:44.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:16:44.408 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:16:44.408 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:16:44.408 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 02:16:44.408 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:16:44.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:16:44.418 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:16:44.418 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:44.418 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 02:16:44.598 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-18 02:16:44.598 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:16:44.598 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28509 150' command took 2 ms to send, 1306 ms to get response, and 1317 ms overall
17-03-18 02:16:44.598 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:16:44.598 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.129696277525964. ------
17-03-18 02:16:44.608 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:16:44.608 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13612 mm
17-03-18 02:16:44.608 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:16:44.608 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 02:16:44.608 -07 000000579 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 02:16:44.608 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29736, sync = True, waitForSettling = False)
17-03-18 02:16:44.608 -07 000000569 INF: Z Motor: Moving to -0.136123 mm, started at -0.129696 mm, distance = -6.43 um
17-03-18 02:16:44.608 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:16:44.618 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:16:44.618 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:44.618 -07 000000467 INF: FPGA: Recv YRDPOS 141369
17-03-18 02:16:44.628 -07 000000569 INF: FPGA: Xmit ZDACW 29736\n [Z Motor]
17-03-18 02:16:44.628 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:16:44.628 -07 000000579 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:44.628 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:16:44.628 -07 000000579 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:16:44.628 -07 000000579 INF: Y Motor: Moving 1352 steps-31
17-03-18 02:16:44.638 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:16:44.638 -07 000000569 INF: FPGA: 'ZDACW 29736' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:16:44.648 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:16:44.658 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:16:44.658 -07 000000502 INF: FPGA: Recv ZDACR 29736
17-03-18 02:16:44.668 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:16:44.668 -07 000000569 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 02:16:44.808 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 02:16:44.808 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:16:44.808 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:44.808 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:16:44.808 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 02:16:44.808 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:16:44.808 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:44.818 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:16:44.818 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:16:44.818 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 02:16:44.838 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:16:44.838 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:16:45.018 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 02:16:45.018 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 02:16:45.068 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:45.068 -07 000000576 INF: FPGA: Recv YRDPOS 143080
17-03-18 02:16:45.078 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:16:45.078 -07 000000579 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:45.078 -07 000000579 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:16:45.078 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.845 mm, average velocity = 2.156 mm/sec
17-03-18 02:16:46.028 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:46.028 -07 000000576 INF: FPGA: Recv YRDPOS 143080
17-03-18 02:16:46.038 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:16:46.038 -07 000000579 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:46.058 -07 000000579 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:16:46.058 -07 000000579 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:16:46.058 -07 000000579 INF: Y Motor: Moved to 69.8633 after 1453 ms (table move)
17-03-18 02:16:46.068 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136123 mm (DAC = 29736)
17-03-18 02:16:46.068 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:46.068 -07 000000444 INF: FPGA: Recv ZSGSRD 30475
17-03-18 02:16:46.078 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:16:46.078 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:46.078 -07 000000606 INF: FPGA: Recv ZSGSRD 30480
17-03-18 02:16:46.088 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:46.088 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:46.088 -07 000000467 INF: FPGA: Recv ZSGSRD 30488
17-03-18 02:16:46.098 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:46.098 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:46.098 -07 000000576 INF: FPGA: Recv ZSGSRD 30479
17-03-18 02:16:46.108 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:46.108 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:46.108 -07 000000618 INF: FPGA: Recv ZSGSRD 30473
17-03-18 02:16:46.118 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:46.118 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:46.118 -07 000000444 INF: FPGA: Recv ZSGSRD 30476
17-03-18 02:16:46.128 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:46.128 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:46.128 -07 000000455 INF: FPGA: Recv ZSGSRD 30475
17-03-18 02:16:46.138 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:46.138 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:46.138 -07 000000629 INF: FPGA: Recv ZSGSRD 30477
17-03-18 02:16:46.148 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:46.148 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:46.148 -07 000000576 INF: FPGA: Recv ZSGSRD 30479
17-03-18 02:16:46.158 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:46.158 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:46.158 -07 000000618 INF: FPGA: Recv ZSGSRD 30486
17-03-18 02:16:46.168 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:46.168 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:16:46.168 -07 000000444 INF: FPGA: Recv ZPIEZORD 26325
17-03-18 02:16:46.178 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:46.178 -07 000000512 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.537 V. Piezo Error = -9.1 V.
17-03-18 02:16:46.178 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.1 um, Read 10 ADC samples: Avg = 30479 (-135.3 uncal um), Error = 0.8 uncal um, Median = 30478 (-135.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30473 (-135.3 uncal um), Max = 30488 (-135.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:16:46.178 -07 000000512 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30479, posNoise = 9, negNoise = 6
17-03-18 02:16:46.178 -07 000000512 INF: Z Motor: After move to -0.136123, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:16:46.178 -07 000000512 INF: Z Motor: Settle wait time = 1457 ms, measure time = 107 ms (allowed 150 ms), total time = 1564 ms
17-03-18 02:16:46.178 -07 000000512 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:16:46.228 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 02:16:46.228 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:16:46.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:16:46.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:16:46.228 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:16:46.228 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:16:46.228 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:16:46.228 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:16:46.238 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:16:46.238 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:16:46.238 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:16:46.238 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:16:46.248 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:16:46.248 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:16:46.248 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:16:46.288 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:16:46.468 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:16:46.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:16:46.588 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:16:46.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:16:46.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:16:46.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-18 02:16:46.628 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:16:46.628 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 02:16:46.628 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:16:46.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:16:46.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:46.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:16:46.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:16:46.728 -07 000000424 INF: Autofocus start
17-03-18 02:16:46.728 -07 000000424 INF: MeasureProfile start
17-03-18 02:16:46.728 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:16:46.728 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:16:46.738 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:16:46.738 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:16:46.738 -07 000000424 INF: MeasureProfile done
17-03-18 02:16:46.738 -07 000000424 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:16:46.738 -07 000000424 INF: Autofocus finished
17-03-18 02:16:46.938 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:16:46.938 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:16:46.938 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.136126913879867. ----------
17-03-18 02:16:46.938 -07 000000610 INF: Cycle	97	Tile	13	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:16:46.948 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28243, sync = True, waitForSettling = True)
17-03-18 02:16:46.948 -07 000000610 INF: Z Motor: Moving to -0.129288 mm, started at -0.136127 mm, distance = 6.84 um
17-03-18 02:16:46.948 -07 000000610 INF: FPGA: Xmit ZDACW 28243\n [Z Motor]
17-03-18 02:16:46.948 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:16:46.958 -07 000000610 INF: FPGA: 'ZDACW 28243' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:46.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:16:46.958 -07 000000606 INF: FPGA: Recv ZDACR 28243
17-03-18 02:16:46.968 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:46.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:16:47.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:47.118 -07 000000467 INF: FPGA: Recv ZSGSRD 29418
17-03-18 02:16:47.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:47.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:47.128 -07 000000576 INF: FPGA: Recv ZSGSRD 29417
17-03-18 02:16:47.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:47.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:47.138 -07 000000502 INF: FPGA: Recv ZSGSRD 29423
17-03-18 02:16:47.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:47.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:47.148 -07 000000462 INF: FPGA: Recv ZSGSRD 29418
17-03-18 02:16:47.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:16:47.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:47.158 -07 000000579 INF: FPGA: Recv ZSGSRD 29412
17-03-18 02:16:47.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:47.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:47.168 -07 000000455 INF: FPGA: Recv ZSGSRD 29414
17-03-18 02:16:47.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:47.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:47.178 -07 000000462 INF: FPGA: Recv ZSGSRD 29419
17-03-18 02:16:47.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:47.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:47.188 -07 000000512 INF: FPGA: Recv ZSGSRD 29421
17-03-18 02:16:47.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:47.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:47.198 -07 000000606 INF: FPGA: Recv ZSGSRD 29410
17-03-18 02:16:47.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:47.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:47.208 -07 000000444 INF: FPGA: Recv ZSGSRD 29417
17-03-18 02:16:47.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:47.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:16:47.218 -07 000000561 INF: FPGA: Recv ZPIEZORD 24923
17-03-18 02:16:47.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:47.228 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.310 V. Piezo Error = -9.9 V.
17-03-18 02:16:47.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29417 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29418 (-128.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29410 (-128.5 uncal um), Max = 29423 (-128.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:16:47.228 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29417, posNoise = 6, negNoise = 7
17-03-18 02:16:47.228 -07 000000610 INF: Z Motor: After move to -0.129288, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:16:47.228 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:16:47.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:16:47.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:16:47.228 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:16:47.228 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:16:47.228 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:16:47.228 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:16:47.228 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:16:47.228 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:16:47.228 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:16:47.228 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:16:47.228 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 02:16:47.228 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:16:47.238 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:16:47.238 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:16:47.238 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:16:47.238 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:16:47.248 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:16:47.248 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:16:47.248 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 02:16:47.248 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:16:47.258 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28420 150\n [Camera]
17-03-18 02:16:47.318 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 4.024884,
17-03-18 02:16:47.458 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:16:47.848 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:16:47.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:16:47.848 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:16:47.848 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:16:47.858 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 02:16:47.858 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:16:47.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:16:47.858 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:16:47.858 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:47.858 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 02:16:48.048 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28420 779
17-03-18 02:16:48.198 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:16:48.248 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 02:16:48.248 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:16:48.248 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:48.248 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 02:16:48.248 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:16:48.248 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:48.258 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:16:48.258 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:16:48.258 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:16:48.268 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 02:16:48.388 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:16:48.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:16:48.388 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:16:48.518 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:16:48.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:16:48.518 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:16:48.518 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:16:48.518 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 02:16:48.528 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:48.528 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:16:48.578 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-18 02:16:48.578 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:16:48.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28420 150' command took 2 ms to send, 1312 ms to get response, and 1321 ms overall
17-03-18 02:16:48.578 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:16:48.578 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.129304400585317. ------
17-03-18 02:16:48.578 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:16:48.578 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13575 mm
17-03-18 02:16:48.578 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:16:48.588 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:16:48.588 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:16:48.588 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 29654, sync = True, waitForSettling = False)
17-03-18 02:16:48.588 -07 000000590 INF: Z Motor: Moving to -0.135747 mm, started at -0.129304 mm, distance = -6.44 um
17-03-18 02:16:48.588 -07 000000590 INF: FPGA: Xmit ZDACW 29654\n [Z Motor]
17-03-18 02:16:48.588 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 02:16:48.588 -07 000000618 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-18 02:16:48.588 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:16:48.598 -07 000000590 INF: FPGA: 'ZDACW 29654' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:16:48.598 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:48.598 -07 000000444 INF: FPGA: Recv YRDPOS 143081
17-03-18 02:16:48.608 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:16:48.608 -07 000000618 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:48.608 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:16:48.608 -07 000000618 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:16:48.608 -07 000000618 INF: Y Motor: Moving 1342 steps-19
17-03-18 02:16:48.618 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:16:48.618 -07 000000444 INF: FPGA: Recv ZDACR 29654
17-03-18 02:16:48.628 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:16:48.628 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:16:48.628 -07 000000590 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 02:16:48.808 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:16:48.808 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 220 ms overall
17-03-18 02:16:48.918 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 02:16:48.918 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:16:48.918 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:48.918 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 02:16:48.918 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:16:48.918 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:48.928 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:16:48.928 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:16:48.928 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 539 ms.
17-03-18 02:16:48.928 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 02:16:48.998 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 02:16:48.998 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 02:16:49.048 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:49.048 -07 000000590 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:16:49.058 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:16:49.058 -07 000000618 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:49.058 -07 000000618 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:16:49.058 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.839 mm, average velocity = 2.125 mm/sec
17-03-18 02:16:50.008 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:50.008 -07 000000501 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:16:50.018 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:16:50.018 -07 000000618 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:50.038 -07 000000618 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:16:50.038 -07 000000618 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:16:50.038 -07 000000618 INF: Y Motor: Moved to 70.6885 after 1454 ms (table move)
17-03-18 02:16:50.048 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135747 mm (DAC = 29654)
17-03-18 02:16:50.048 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:50.048 -07 000000461 INF: FPGA: Recv ZSGSRD 30425
17-03-18 02:16:50.058 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:50.058 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:50.058 -07 000000502 INF: FPGA: Recv ZSGSRD 30425
17-03-18 02:16:50.068 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:50.068 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:50.068 -07 000000424 INF: FPGA: Recv ZSGSRD 30422
17-03-18 02:16:50.078 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:50.078 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:50.078 -07 000000455 INF: FPGA: Recv ZSGSRD 30422
17-03-18 02:16:50.088 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:50.088 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:50.088 -07 000000629 INF: FPGA: Recv ZSGSRD 30422
17-03-18 02:16:50.098 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:50.098 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:50.098 -07 000000462 INF: FPGA: Recv ZSGSRD 30421
17-03-18 02:16:50.108 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:50.108 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:50.108 -07 000000569 INF: FPGA: Recv ZSGSRD 30422
17-03-18 02:16:50.118 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:50.118 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:50.118 -07 000000606 INF: FPGA: Recv ZSGSRD 30417
17-03-18 02:16:50.128 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:50.128 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:50.128 -07 000000576 INF: FPGA: Recv ZSGSRD 30425
17-03-18 02:16:50.138 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:50.138 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:50.138 -07 000000501 INF: FPGA: Recv ZSGSRD 30421
17-03-18 02:16:50.148 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:50.148 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:16:50.148 -07 000000461 INF: FPGA: Recv ZPIEZORD 26238
17-03-18 02:16:50.158 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:50.158 -07 000000561 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.525 V. Piezo Error = -9.2 V.
17-03-18 02:16:50.158 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30422 (-135.0 uncal um), Error = 0.8 uncal um, Median = 30422 (-135.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30417 (-134.9 uncal um), Max = 30425 (-135.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:16:50.158 -07 000000561 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30422, posNoise = 3, negNoise = 5
17-03-18 02:16:50.158 -07 000000561 INF: Z Motor: After move to -0.135747, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:16:50.158 -07 000000561 INF: Z Motor: Settle wait time = 1458 ms, measure time = 110 ms (allowed 150 ms), total time = 1568 ms
17-03-18 02:16:50.158 -07 000000561 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:16:50.198 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 02:16:50.198 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:16:50.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:16:50.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:16:50.198 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:16:50.198 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:16:50.198 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:16:50.198 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:16:50.198 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:16:50.198 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:16:50.208 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:16:50.208 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:16:50.218 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:16:50.218 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:16:50.218 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:16:50.268 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:16:50.568 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:16:50.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:16:50.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:16:50.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) start.
17-03-18 02:16:50.608 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:16:50.608 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 02:16:50.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 02:16:50.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:16:50.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:50.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:16:50.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:16:50.708 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:16:50.708 -07 000000455 INF: Autofocus start
17-03-18 02:16:50.708 -07 000000455 INF: MeasureProfile start
17-03-18 02:16:50.718 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:16:50.718 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:16:50.718 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:16:50.718 -07 000000455 INF: MeasureProfile done
17-03-18 02:16:50.718 -07 000000455 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:16:50.718 -07 000000455 INF: Autofocus finished
17-03-18 02:16:50.918 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:16:50.918 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:16:50.918 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.135760733787787. ----------
17-03-18 02:16:50.918 -07 000000610 INF: Cycle	97	Tile	14	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:16:50.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28162, sync = True, waitForSettling = True)
17-03-18 02:16:50.928 -07 000000610 INF: Z Motor: Moving to -0.128917 mm, started at -0.135761 mm, distance = 6.84 um
17-03-18 02:16:50.928 -07 000000610 INF: FPGA: Xmit ZDACW 28162\n [Z Motor]
17-03-18 02:16:50.928 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:16:50.938 -07 000000610 INF: FPGA: 'ZDACW 28162' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:16:50.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:16:50.938 -07 000000462 INF: FPGA: Recv ZDACR 28162
17-03-18 02:16:50.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:50.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:16:51.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:51.098 -07 000000444 INF: FPGA: Recv ZSGSRD 29364
17-03-18 02:16:51.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:16:51.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:51.108 -07 000000579 INF: FPGA: Recv ZSGSRD 29362
17-03-18 02:16:51.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:51.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:51.118 -07 000000512 INF: FPGA: Recv ZSGSRD 29363
17-03-18 02:16:51.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:51.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:51.128 -07 000000455 INF: FPGA: Recv ZSGSRD 29350
17-03-18 02:16:51.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:51.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:51.138 -07 000000576 INF: FPGA: Recv ZSGSRD 29361
17-03-18 02:16:51.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:51.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:51.148 -07 000000424 INF: FPGA: Recv ZSGSRD 29356
17-03-18 02:16:51.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:51.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:51.158 -07 000000579 INF: FPGA: Recv ZSGSRD 29359
17-03-18 02:16:51.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:51.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:51.168 -07 000000569 INF: FPGA: Recv ZSGSRD 29363
17-03-18 02:16:51.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:51.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:51.178 -07 000000606 INF: FPGA: Recv ZSGSRD 29357
17-03-18 02:16:51.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:51.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:51.188 -07 000000626 INF: FPGA: Recv ZSGSRD 29361
17-03-18 02:16:51.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:51.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:16:51.198 -07 000000512 INF: FPGA: Recv ZPIEZORD 24845
17-03-18 02:16:51.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:16:51.208 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.297 V. Piezo Error = -9.9 V.
17-03-18 02:16:51.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29360 (-128.2 uncal um), Error = 0.8 uncal um, Median = 29361 (-128.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29350 (-128.1 uncal um), Max = 29364 (-128.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 02:16:51.208 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29360, posNoise = 4, negNoise = 10
17-03-18 02:16:51.208 -07 000000610 INF: Z Motor: After move to -0.128917, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:16:51.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:16:51.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:16:51.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:16:51.208 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:16:51.208 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:16:51.208 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:16:51.208 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:16:51.208 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:16:51.208 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:16:51.208 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:16:51.208 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:16:51.208 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:16:51.208 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:16:51.208 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:16:51.208 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:16:51.218 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:16:51.218 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:16:51.218 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:16:51.218 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:16:51.218 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:16:51.218 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:16:51.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28338 150\n [Camera]
17-03-18 02:16:51.428 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:16:51.468 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:16:51.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:16:51.818 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:16:51.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:16:51.818 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:16:51.818 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:16:51.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:16:51.818 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:16:51.828 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:16:51.828 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 02:16:51.828 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:51.828 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:16:52.018 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28338 779
17-03-18 02:16:52.158 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:16:52.198 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:16:52.198 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:16:52.198 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:52.208 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:16:52.208 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:16:52.208 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:52.208 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:16:52.208 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:16:52.208 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:16:52.218 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:16:52.348 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:16:52.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:16:52.348 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:16:52.468 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:16:52.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:16:52.478 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:16:52.478 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:52.478 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:16:52.478 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:16:52.478 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:16:52.538 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:16:52.538 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:16:52.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28338 150' command took 4 ms to send, 1309 ms to get response, and 1317 ms overall
17-03-18 02:16:52.548 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:16:52.548 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.128938220493237. ------
17-03-18 02:16:52.548 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:16:52.548 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13565 mm
17-03-18 02:16:52.548 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:16:52.548 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:16:52.548 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 02:16:52.548 -07 000000462 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 02:16:52.548 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 29632, sync = True, waitForSettling = False)
17-03-18 02:16:52.548 -07 000000590 INF: Z Motor: Moving to -0.135647 mm, started at -0.128938 mm, distance = -6.71 um
17-03-18 02:16:52.558 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:16:52.558 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:52.558 -07 000000461 INF: FPGA: Recv YRDPOS 144771
17-03-18 02:16:52.568 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:16:52.568 -07 000000462 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:52.568 -07 000000590 INF: FPGA: Xmit ZDACW 29632\n [Z Motor]
17-03-18 02:16:52.568 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:16:52.568 -07 000000462 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:16:52.568 -07 000000462 INF: Y Motor: Moving 1350 steps-29
17-03-18 02:16:52.578 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:16:52.578 -07 000000590 INF: FPGA: 'ZDACW 29632' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:16:52.588 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:16:52.598 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:16:52.598 -07 000000461 INF: FPGA: Recv ZDACR 29632
17-03-18 02:16:52.608 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:16:52.608 -07 000000590 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 02:16:52.778 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:16:52.778 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 225 ms overall
17-03-18 02:16:52.788 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 4.045313,
17-03-18 02:16:52.878 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 02:16:52.878 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:16:52.878 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:52.878 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:16:52.878 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:16:52.878 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:52.888 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:16:52.888 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 534 ms.
17-03-18 02:16:52.888 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:16:52.888 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 02:16:52.968 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:16:52.968 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 394 ms overall
17-03-18 02:16:53.008 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:53.018 -07 000000461 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:16:53.018 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-18 02:16:53.018 -07 000000462 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:53.018 -07 000000462 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:16:53.018 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.142 mm/sec
17-03-18 02:16:53.968 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:53.968 -07 000000444 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:16:53.978 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:16:53.978 -07 000000462 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:53.998 -07 000000462 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:16:53.998 -07 000000462 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:16:53.998 -07 000000462 INF: Y Motor: Moved to 71.5190 after 1449 ms (table move)
17-03-18 02:16:54.008 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135647 mm (DAC = 29632)
17-03-18 02:16:54.008 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:54.008 -07 000000502 INF: FPGA: Recv ZSGSRD 30406
17-03-18 02:16:54.018 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:54.018 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:54.018 -07 000000430 INF: FPGA: Recv ZSGSRD 30407
17-03-18 02:16:54.028 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:54.028 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:54.028 -07 000000569 INF: FPGA: Recv ZSGSRD 30403
17-03-18 02:16:54.038 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:54.038 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:54.038 -07 000000424 INF: FPGA: Recv ZSGSRD 30411
17-03-18 02:16:54.048 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:54.048 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:54.048 -07 000000462 INF: FPGA: Recv ZSGSRD 30412
17-03-18 02:16:54.058 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:54.058 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:54.058 -07 000000590 INF: FPGA: Recv ZSGSRD 30412
17-03-18 02:16:54.068 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:54.068 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:54.068 -07 000000444 INF: FPGA: Recv ZSGSRD 30409
17-03-18 02:16:54.078 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:54.078 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:54.078 -07 000000629 INF: FPGA: Recv ZSGSRD 30400
17-03-18 02:16:54.088 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:54.088 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:54.088 -07 000000461 INF: FPGA: Recv ZSGSRD 30398
17-03-18 02:16:54.098 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:54.098 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:54.098 -07 000000561 INF: FPGA: Recv ZSGSRD 30405
17-03-18 02:16:54.108 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:54.108 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:16:54.108 -07 000000590 INF: FPGA: Recv ZPIEZORD 26250
17-03-18 02:16:54.118 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:54.118 -07 000000579 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.522 V. Piezo Error = -9.1 V.
17-03-18 02:16:54.118 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.6 um, Read 10 ADC samples: Avg = 30406 (-134.9 uncal um), Error = 0.8 uncal um, Median = 30406 (-134.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30398 (-134.8 uncal um), Max = 30412 (-134.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:16:54.118 -07 000000579 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30406, posNoise = 6, negNoise = 8
17-03-18 02:16:54.118 -07 000000579 INF: Z Motor: After move to -0.135647, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:16:54.118 -07 000000579 INF: Z Motor: Settle wait time = 1452 ms, measure time = 110 ms (allowed 150 ms), total time = 1562 ms
17-03-18 02:16:54.118 -07 000000579 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:16:54.158 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-18 02:16:54.158 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:16:54.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:16:54.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:16:54.158 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:16:54.158 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:16:54.158 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:16:54.158 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:16:54.158 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:16:54.158 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:16:54.168 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:16:54.168 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:16:54.168 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:16:54.168 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:16:54.178 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:16:54.218 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:16:54.518 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:16:54.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:16:54.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:16:54.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1163922192, 0x0, 559484976) start.
17-03-18 02:16:54.558 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:16:54.568 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 02:16:54.568 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 387 ms overall
17-03-18 02:16:54.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1163922192, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:16:54.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:54.638 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:16:54.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:16:54.668 -07 000000444 INF: Autofocus start
17-03-18 02:16:54.668 -07 000000444 INF: MeasureProfile start
17-03-18 02:16:54.668 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:16:54.668 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:16:54.678 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:16:54.678 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:16:54.678 -07 000000444 INF: MeasureProfile done
17-03-18 02:16:54.678 -07 000000444 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:16:54.678 -07 000000444 INF: Autofocus finished
17-03-18 02:16:54.878 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:16:54.878 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:16:54.878 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.135657946393519. ----------
17-03-18 02:16:54.878 -07 000000610 INF: Cycle	97	Tile	15	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:16:54.888 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28157, sync = True, waitForSettling = True)
17-03-18 02:16:54.888 -07 000000610 INF: Z Motor: Moving to -0.128894 mm, started at -0.135658 mm, distance = 6.76 um
17-03-18 02:16:54.888 -07 000000610 INF: FPGA: Xmit ZDACW 28157\n [Z Motor]
17-03-18 02:16:54.888 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:16:54.898 -07 000000610 INF: FPGA: 'ZDACW 28157' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:54.898 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:16:54.898 -07 000000590 INF: FPGA: Recv ZDACR 28157
17-03-18 02:16:54.908 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:54.908 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:16:55.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:55.058 -07 000000512 INF: FPGA: Recv ZSGSRD 29358
17-03-18 02:16:55.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:16:55.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:55.068 -07 000000430 INF: FPGA: Recv ZSGSRD 29354
17-03-18 02:16:55.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:55.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:55.078 -07 000000576 INF: FPGA: Recv ZSGSRD 29353
17-03-18 02:16:55.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:55.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:55.088 -07 000000561 INF: FPGA: Recv ZSGSRD 29351
17-03-18 02:16:55.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:55.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:55.098 -07 000000579 INF: FPGA: Recv ZSGSRD 29356
17-03-18 02:16:55.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:55.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:55.108 -07 000000424 INF: FPGA: Recv ZSGSRD 29360
17-03-18 02:16:55.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:55.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:55.118 -07 000000502 INF: FPGA: Recv ZSGSRD 29348
17-03-18 02:16:55.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:55.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:55.128 -07 000000618 INF: FPGA: Recv ZSGSRD 29362
17-03-18 02:16:55.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:55.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:55.138 -07 000000606 INF: FPGA: Recv ZSGSRD 29357
17-03-18 02:16:55.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:55.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:55.148 -07 000000501 INF: FPGA: Recv ZSGSRD 29350
17-03-18 02:16:55.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:55.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:16:55.158 -07 000000512 INF: FPGA: Recv ZPIEZORD 24880
17-03-18 02:16:55.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:55.168 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.296 V. Piezo Error = -9.8 V.
17-03-18 02:16:55.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29355 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29355 (-128.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29348 (-128.1 uncal um), Max = 29362 (-128.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:16:55.168 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29355, posNoise = 7, negNoise = 7
17-03-18 02:16:55.168 -07 000000610 INF: Z Motor: After move to -0.128894, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:16:55.168 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:16:55.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:16:55.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:16:55.168 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:16:55.168 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:16:55.168 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:16:55.168 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:16:55.168 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:16:55.168 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:16:55.168 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:16:55.168 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:16:55.168 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:16:55.168 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:16:55.168 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:16:55.168 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:16:55.178 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:16:55.178 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:16:55.188 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:16:55.188 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:16:55.188 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:16:55.188 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:16:55.188 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28333 150\n [Camera]
17-03-18 02:16:55.388 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:16:55.788 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:16:55.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:16:55.788 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:16:55.788 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:16:55.788 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:16:55.788 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:16:55.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:16:55.788 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:16:55.788 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:55.788 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:16:55.978 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28333 779
17-03-18 02:16:56.128 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:16:56.168 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:16:56.168 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:16:56.168 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:56.168 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:16:56.168 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:16:56.168 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:56.168 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:16:56.168 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:16:56.168 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:16:56.178 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:16:56.318 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:16:56.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:16:56.318 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:16:56.428 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:16:56.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:16:56.428 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:16:56.438 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:16:56.438 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:56.438 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:16:56.438 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:16:56.468 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:16:56.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:16:56.508 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:16:56.508 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:16:56.508 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28333 150' command took 2 ms to send, 1305 ms to get response, and 1317 ms overall
17-03-18 02:16:56.508 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:16:56.508 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.128906099432528. ------
17-03-18 02:16:56.518 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13523 mm
17-03-18 02:16:56.518 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:16:56.518 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:16:56.518 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:16:56.518 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 29541, sync = True, waitForSettling = False)
17-03-18 02:16:56.518 -07 000000444 INF: Z Motor: Moving to -0.135230 mm, started at -0.128906 mm, distance = -6.32 um
17-03-18 02:16:56.518 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 02:16:56.518 -07 000000561 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 02:16:56.528 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:56.528 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:56.528 -07 000000576 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:16:56.538 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:16:56.538 -07 000000561 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:56.538 -07 000000561 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:16:56.538 -07 000000561 INF: Y Motor: Moving 1350 steps-28
17-03-18 02:16:56.538 -07 000000444 INF: FPGA: Xmit ZDACW 29541\n [Z Motor]
17-03-18 02:16:56.538 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:16:56.548 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:16:56.548 -07 000000444 INF: FPGA: 'ZDACW 29541' command took 3 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:16:56.558 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:16:56.568 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:16:56.568 -07 000000569 INF: FPGA: Recv ZDACR 29541
17-03-18 02:16:56.578 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:16:56.578 -07 000000444 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 02:16:56.748 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:16:56.748 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:16:56.838 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:16:56.838 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:16:56.838 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:56.838 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:16:56.838 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:16:56.838 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:56.848 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:16:56.848 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:16:56.848 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 526 ms.
17-03-18 02:16:56.848 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 02:16:56.928 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 02:16:56.928 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 02:16:56.978 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:56.978 -07 000000629 INF: FPGA: Recv YRDPOS 148172
17-03-18 02:16:56.988 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:16:56.988 -07 000000561 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:56.988 -07 000000561 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 02:16:56.988 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-18 02:16:57.938 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:16:57.938 -07 000000461 INF: FPGA: Recv YRDPOS 148172
17-03-18 02:16:57.948 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:16:57.948 -07 000000561 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:16:57.968 -07 000000561 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:16:57.968 -07 000000561 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:16:57.968 -07 000000561 INF: Y Motor: Moved to 72.3496 after 1453 ms (table move)
17-03-18 02:16:57.978 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135230 mm (DAC = 29541)
17-03-18 02:16:57.978 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:57.978 -07 000000606 INF: FPGA: Recv ZSGSRD 30338
17-03-18 02:16:57.988 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:16:57.988 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:57.988 -07 000000512 INF: FPGA: Recv ZSGSRD 30335
17-03-18 02:16:57.998 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:57.998 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:57.998 -07 000000629 INF: FPGA: Recv ZSGSRD 30342
17-03-18 02:16:58.008 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:58.008 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:58.008 -07 000000444 INF: FPGA: Recv ZSGSRD 30345
17-03-18 02:16:58.018 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:58.018 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:58.018 -07 000000501 INF: FPGA: Recv ZSGSRD 30339
17-03-18 02:16:58.028 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:58.028 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:58.028 -07 000000606 INF: FPGA: Recv ZSGSRD 30343
17-03-18 02:16:58.038 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:58.038 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:58.038 -07 000000512 INF: FPGA: Recv ZSGSRD 30340
17-03-18 02:16:58.048 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:58.048 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:58.048 -07 000000579 INF: FPGA: Recv ZSGSRD 30342
17-03-18 02:16:58.058 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:58.058 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:58.058 -07 000000444 INF: FPGA: Recv ZSGSRD 30338
17-03-18 02:16:58.068 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:58.068 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:58.068 -07 000000502 INF: FPGA: Recv ZSGSRD 30340
17-03-18 02:16:58.078 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:58.078 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:16:58.078 -07 000000455 INF: FPGA: Recv ZPIEZORD 26192
17-03-18 02:16:58.088 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:58.088 -07 000000462 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.508 V. Piezo Error = -9.1 V.
17-03-18 02:16:58.088 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.2 um, Read 10 ADC samples: Avg = 30340 (-134.4 uncal um), Error = 0.8 uncal um, Median = 30340 (-134.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30335 (-134.4 uncal um), Max = 30345 (-134.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:16:58.088 -07 000000462 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30340, posNoise = 5, negNoise = 5
17-03-18 02:16:58.088 -07 000000462 INF: Z Motor: After move to -0.135230, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:16:58.088 -07 000000462 INF: Z Motor: Settle wait time = 1457 ms, measure time = 109 ms (allowed 150 ms), total time = 1566 ms
17-03-18 02:16:58.088 -07 000000462 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:16:58.138 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 02:16:58.138 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:16:58.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:16:58.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:16:58.138 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:16:58.138 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:16:58.138 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:16:58.138 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:16:58.138 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:16:58.138 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:16:58.148 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 4.050752,
17-03-18 02:16:58.148 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:16:58.148 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:16:58.158 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:16:58.158 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:16:58.168 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:16:58.208 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:16:58.508 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:16:58.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:16:58.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:16:58.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 02:16:58.548 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:16:58.548 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 02:16:58.548 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 386 ms overall
17-03-18 02:16:58.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:16:58.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:16:58.638 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:16:58.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-18 02:16:58.748 -07 000000591 INF: Autofocus start
17-03-18 02:16:58.748 -07 000000591 INF: MeasureProfile start
17-03-18 02:16:58.748 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:16:58.748 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:16:58.758 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:16:58.758 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:16:58.758 -07 000000591 INF: MeasureProfile done
17-03-18 02:16:58.758 -07 000000591 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:16:58.758 -07 000000591 INF: Autofocus finished
17-03-18 02:16:58.958 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:16:58.958 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 02:16:58.968 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.135233948392162. ----------
17-03-18 02:16:58.968 -07 000000610 INF: Cycle	97	Tile	16	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:16:58.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28036, sync = True, waitForSettling = True)
17-03-18 02:16:58.968 -07 000000610 INF: Z Motor: Moving to -0.128341 mm, started at -0.135234 mm, distance = 6.89 um
17-03-18 02:16:58.968 -07 000000610 INF: FPGA: Xmit ZDACW 28036\n [Z Motor]
17-03-18 02:16:58.968 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:16:58.978 -07 000000610 INF: FPGA: 'ZDACW 28036' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:16:58.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:16:58.978 -07 000000569 INF: FPGA: Recv ZDACR 28036
17-03-18 02:16:58.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:58.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:16:59.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:59.138 -07 000000618 INF: FPGA: Recv ZSGSRD 29268
17-03-18 02:16:59.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:16:59.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:59.148 -07 000000629 INF: FPGA: Recv ZSGSRD 29268
17-03-18 02:16:59.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:59.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:59.158 -07 000000579 INF: FPGA: Recv ZSGSRD 29264
17-03-18 02:16:59.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:59.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:59.168 -07 000000424 INF: FPGA: Recv ZSGSRD 29270
17-03-18 02:16:59.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:59.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:59.178 -07 000000512 INF: FPGA: Recv ZSGSRD 29268
17-03-18 02:16:59.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:59.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:59.188 -07 000000576 INF: FPGA: Recv ZSGSRD 29266
17-03-18 02:16:59.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:59.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:59.198 -07 000000455 INF: FPGA: Recv ZSGSRD 29268
17-03-18 02:16:59.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:59.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:59.208 -07 000000462 INF: FPGA: Recv ZSGSRD 29265
17-03-18 02:16:59.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:59.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:59.218 -07 000000424 INF: FPGA: Recv ZSGSRD 29275
17-03-18 02:16:59.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:59.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:16:59.228 -07 000000591 INF: FPGA: Recv ZSGSRD 29264
17-03-18 02:16:59.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:59.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:16:59.238 -07 000000618 INF: FPGA: Recv ZPIEZORD 24787
17-03-18 02:16:59.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:16:59.248 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.278 V. Piezo Error = -9.8 V.
17-03-18 02:16:59.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29268 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29268 (-127.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29264 (-127.5 uncal um), Max = 29275 (-127.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:16:59.248 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29268, posNoise = 7, negNoise = 4
17-03-18 02:16:59.248 -07 000000610 INF: Z Motor: After move to -0.128341, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:16:59.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:16:59.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:16:59.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:16:59.248 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:16:59.248 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:16:59.248 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:16:59.248 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:16:59.248 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:16:59.248 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:16:59.248 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:16:59.248 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:16:59.248 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:16:59.248 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:16:59.248 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:16:59.248 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:16:59.258 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:16:59.258 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:16:59.258 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:16:59.258 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:16:59.258 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:16:59.258 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:16:59.268 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28212 150\n [Camera]
17-03-18 02:16:59.468 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 02:16:59.858 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:16:59.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:16:59.858 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:16:59.858 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:16:59.858 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:16:59.868 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:16:59.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:16:59.868 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:16:59.868 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:16:59.868 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:17:00.048 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28212 779
17-03-18 02:17:00.198 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:17:00.238 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 02:17:00.238 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:17:00.238 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:17:00.238 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:17:00.238 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:17:00.238 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:17:00.248 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:17:00.248 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:17:00.248 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:17:00.248 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:17:00.388 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:17:00.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:17:00.388 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:17:00.508 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:17:00.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:17:00.508 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:17:00.508 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:17:00.508 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:17:00.508 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:17:00.508 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:17:00.578 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-18 02:17:00.588 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:17:00.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28212 150' command took 2 ms to send, 1310 ms to get response, and 1318 ms overall
17-03-18 02:17:00.588 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:17:00.588 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.128347192976195. ------
17-03-18 02:17:00.588 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:17:00.588 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13492 mm
17-03-18 02:17:00.588 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:17:00.588 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:17:00.588 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 02:17:00.588 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 29474, sync = True, waitForSettling = False)
17-03-18 02:17:00.588 -07 000000579 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-18 02:17:00.588 -07 000000591 INF: Z Motor: Moving to -0.134923 mm, started at -0.128347 mm, distance = -6.58 um
17-03-18 02:17:00.598 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:17:00.598 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:17:00.598 -07 000000444 INF: FPGA: Recv YRDPOS 148173
17-03-18 02:17:00.608 -07 000000591 INF: FPGA: Xmit ZDACW 29474\n [Z Motor]
17-03-18 02:17:00.608 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:17:00.608 -07 000000579 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:17:00.608 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:17:00.608 -07 000000579 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:17:00.608 -07 000000579 INF: Y Motor: Moving 1348 steps-27
17-03-18 02:17:00.618 -07 000000591 INF: FPGA: 'ZDACW 29474' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 02:17:00.618 -07 000000430 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:17:00.628 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:17:00.638 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:17:00.638 -07 000000569 INF: FPGA: Recv ZDACR 29474
17-03-18 02:17:00.648 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:17:00.648 -07 000000591 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 02:17:00.818 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:17:00.818 -07 000000430 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 02:17:00.908 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 02:17:00.908 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:17:00.908 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:17:00.908 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 02:17:00.908 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:17:00.908 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:17:00.918 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:17:00.918 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:17:00.918 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-18 02:17:00.918 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 02:17:00.998 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:17:00.998 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 389 ms overall
17-03-18 02:17:01.048 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:17:01.048 -07 000000590 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:17:01.058 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:17:01.058 -07 000000579 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:17:01.058 -07 000000579 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 02:17:01.058 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.843 mm, average velocity = 2.167 mm/sec
17-03-18 02:17:01.468 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:17:01.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:17:02.008 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:17:02.008 -07 000000430 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:17:02.018 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:02.018 -07 000000579 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:17:02.038 -07 000000579 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:17:02.038 -07 000000579 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:17:02.038 -07 000000579 INF: Y Motor: Moved to 73.1763 after 1449 ms (table move)
17-03-18 02:17:02.048 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134923 mm (DAC = 29474)
17-03-18 02:17:02.048 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:02.048 -07 000000590 INF: FPGA: Recv ZSGSRD 30294
17-03-18 02:17:02.058 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:17:02.058 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:02.058 -07 000000618 INF: FPGA: Recv ZSGSRD 30292
17-03-18 02:17:02.068 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:02.068 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:02.068 -07 000000455 INF: FPGA: Recv ZSGSRD 30287
17-03-18 02:17:02.078 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:02.078 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:02.078 -07 000000512 INF: FPGA: Recv ZSGSRD 30295
17-03-18 02:17:02.088 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:02.088 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:02.088 -07 000000579 INF: FPGA: Recv ZSGSRD 30300
17-03-18 02:17:02.098 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:02.098 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:02.098 -07 000000424 INF: FPGA: Recv ZSGSRD 30296
17-03-18 02:17:02.108 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:02.108 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:02.108 -07 000000502 INF: FPGA: Recv ZSGSRD 30291
17-03-18 02:17:02.118 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:02.118 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:02.118 -07 000000462 INF: FPGA: Recv ZSGSRD 30295
17-03-18 02:17:02.128 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:02.128 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:02.128 -07 000000629 INF: FPGA: Recv ZSGSRD 30294
17-03-18 02:17:02.138 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:02.138 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:02.138 -07 000000591 INF: FPGA: Recv ZSGSRD 30292
17-03-18 02:17:02.148 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:02.148 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:17:02.148 -07 000000444 INF: FPGA: Recv ZPIEZORD 26157
17-03-18 02:17:02.158 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:02.158 -07 000000461 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.497 V. Piezo Error = -9.1 V.
17-03-18 02:17:02.158 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30294 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30294 (-134.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30287 (-134.1 uncal um), Max = 30300 (-134.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:17:02.158 -07 000000461 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30294, posNoise = 6, negNoise = 7
17-03-18 02:17:02.158 -07 000000461 INF: Z Motor: After move to -0.134923, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:17:02.158 -07 000000461 INF: Z Motor: Settle wait time = 1453 ms, measure time = 108 ms (allowed 150 ms), total time = 1561 ms
17-03-18 02:17:02.158 -07 000000461 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:17:02.208 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 02:17:02.208 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:17:02.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:17:02.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:17:02.218 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:17:02.228 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:17:02.228 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:17:02.228 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:17:02.228 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:17:02.228 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:17:02.228 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:17:02.228 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:17:02.238 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:17:02.238 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:17:02.238 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:17:02.288 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:17:02.588 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:17:02.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:17:02.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:17:02.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 02:17:02.628 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:17:02.628 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 02:17:02.628 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 385 ms overall
17-03-18 02:17:02.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:17:02.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:17:02.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:17:02.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:17:02.728 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:17:02.728 -07 000000502 INF: Autofocus start
17-03-18 02:17:02.728 -07 000000502 INF: MeasureProfile start
17-03-18 02:17:02.728 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:17:02.738 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:17:02.738 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:17:02.738 -07 000000502 INF: MeasureProfile done
17-03-18 02:17:02.738 -07 000000502 INF: X=32  Z correction [um]=0.1299841
17-03-18 02:17:02.738 -07 000000502 INF: Autofocus finished
17-03-18 02:17:02.938 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:17:02.938 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 02:17:02.938 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.134938434633641. ----------
17-03-18 02:17:02.938 -07 000000610 INF: Cycle	97	Tile	17	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:17:02.948 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28015, sync = True, waitForSettling = True)
17-03-18 02:17:02.948 -07 000000610 INF: Z Motor: Moving to -0.128244 mm, started at -0.134938 mm, distance = 6.69 um
17-03-18 02:17:02.948 -07 000000610 INF: FPGA: Xmit ZDACW 28015\n [Z Motor]
17-03-18 02:17:02.948 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:17:02.958 -07 000000610 INF: FPGA: 'ZDACW 28015' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:17:02.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:17:02.958 -07 000000461 INF: FPGA: Recv ZDACR 28015
17-03-18 02:17:02.968 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:02.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:17:03.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:03.118 -07 000000606 INF: FPGA: Recv ZSGSRD 29255
17-03-18 02:17:03.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:17:03.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:03.128 -07 000000501 INF: FPGA: Recv ZSGSRD 29251
17-03-18 02:17:03.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:03.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:03.138 -07 000000467 INF: FPGA: Recv ZSGSRD 29256
17-03-18 02:17:03.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:03.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:03.148 -07 000000430 INF: FPGA: Recv ZSGSRD 29251
17-03-18 02:17:03.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:03.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:03.158 -07 000000569 INF: FPGA: Recv ZSGSRD 29255
17-03-18 02:17:03.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:03.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:03.168 -07 000000444 INF: FPGA: Recv ZSGSRD 29249
17-03-18 02:17:03.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:03.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:03.178 -07 000000561 INF: FPGA: Recv ZSGSRD 29251
17-03-18 02:17:03.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:03.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:03.188 -07 000000591 INF: FPGA: Recv ZSGSRD 29257
17-03-18 02:17:03.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:03.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:03.208 -07 000000444 INF: FPGA: Recv ZSGSRD 29254
17-03-18 02:17:03.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:17:03.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:03.218 -07 000000501 INF: FPGA: Recv ZSGSRD 29259
17-03-18 02:17:03.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:03.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:17:03.228 -07 000000626 INF: FPGA: Recv ZPIEZORD 24791
17-03-18 02:17:03.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:03.238 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.275 V. Piezo Error = -9.8 V.
17-03-18 02:17:03.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29254 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29254 (-127.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29249 (-127.5 uncal um), Max = 29259 (-127.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:17:03.238 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29254, posNoise = 5, negNoise = 5
17-03-18 02:17:03.238 -07 000000610 INF: Z Motor: After move to -0.128244, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:17:03.238 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-18 02:17:03.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:17:03.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:17:03.238 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:17:03.238 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:17:03.238 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:17:03.238 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:17:03.238 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:17:03.238 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:17:03.238 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-18 02:17:03.238 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:17:03.238 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 4 ms.
17-03-18 02:17:03.238 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:17:03.248 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:17:03.248 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:17:03.248 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:17:03.248 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:17:03.258 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:17:03.258 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:17:03.258 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:17:03.258 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:17:03.258 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28191 150\n [Camera]
17-03-18 02:17:03.458 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:17:03.518 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 4.015368,
17-03-18 02:17:03.848 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:17:03.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:17:03.848 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:17:03.848 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:17:03.848 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:17:03.858 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:17:03.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:17:03.858 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:17:03.858 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:17:03.858 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:17:04.048 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28191 779
17-03-18 02:17:04.198 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:17:04.238 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 02:17:04.238 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:17:04.238 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 02:17:04.238 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:17:04.238 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:17:04.238 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:17:04.248 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:17:04.248 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:17:04.248 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:17:04.248 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:17:04.388 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:17:04.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:17:04.388 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:17:04.388 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:17:04.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:17:04.388 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:17:04.388 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:17:04.388 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:17:04.398 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:17:04.398 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:17:04.578 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-18 02:17:04.578 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:17:04.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28191 150' command took 2 ms to send, 1312 ms to get response, and 1318 ms overall
17-03-18 02:17:04.578 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:17:04.578 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.12825725400621. ------
17-03-18 02:17:04.578 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13461 mm
17-03-18 02:17:04.578 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:17:04.578 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:17:04.588 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 02:17:04.588 -07 000000561 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 02:17:04.588 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:17:04.588 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:17:04.588 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-18 02:17:04.588 -07 000000579 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:17:04.588 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 29406, sync = True, waitForSettling = False)
17-03-18 02:17:04.588 -07 000000467 INF: Z Motor: Moving to -0.134612 mm, started at -0.128257 mm, distance = -6.35 um
17-03-18 02:17:04.598 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:17:04.598 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:17:04.598 -07 000000561 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:17:04.598 -07 000000561 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:17:04.598 -07 000000561 INF: Y Motor: Moving 1354 steps-33
17-03-18 02:17:04.608 -07 000000467 INF: FPGA: Xmit ZDACW 29406\n [Z Motor]
17-03-18 02:17:04.608 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 02:17:04.618 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:17:04.618 -07 000000467 INF: FPGA: 'ZDACW 29406' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:17:04.628 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:17:04.628 -07 000000618 INF: FPGA: Recv ZDACR 29406
17-03-18 02:17:04.638 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:17:04.638 -07 000000467 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 02:17:04.778 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 02:17:04.778 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:17:04.778 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:17:04.778 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 02:17:04.778 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:17:04.778 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:17:04.788 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:17:04.788 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:17:04.788 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:17:04.788 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:17:04.798 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:17:04.798 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 208 ms overall
17-03-18 02:17:04.988 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 02:17:04.988 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-18 02:17:05.028 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:17:05.028 -07 000000629 INF: FPGA: Recv YRDPOS 151569
17-03-18 02:17:05.038 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:17:05.038 -07 000000561 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:17:05.038 -07 000000561 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:17:05.038 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.126 mm/sec
17-03-18 02:17:05.988 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:17:05.988 -07 000000430 INF: FPGA: Recv YRDPOS 151569
17-03-18 02:17:05.998 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:17:05.998 -07 000000561 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:17:06.018 -07 000000561 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:17:06.018 -07 000000561 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:17:06.018 -07 000000561 INF: Y Motor: Moved to 74.0083 after 1430 ms (table move)
17-03-18 02:17:06.018 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134612 mm (DAC = 29406)
17-03-18 02:17:06.018 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:06.018 -07 000000618 INF: FPGA: Recv ZSGSRD 30246
17-03-18 02:17:06.028 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:17:06.028 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:06.028 -07 000000467 INF: FPGA: Recv ZSGSRD 30242
17-03-18 02:17:06.038 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:06.038 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:06.038 -07 000000569 INF: FPGA: Recv ZSGSRD 30247
17-03-18 02:17:06.048 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:06.048 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:06.048 -07 000000626 INF: FPGA: Recv ZSGSRD 30240
17-03-18 02:17:06.058 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:06.058 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:06.058 -07 000000561 INF: FPGA: Recv ZSGSRD 30243
17-03-18 02:17:06.068 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:06.068 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:06.068 -07 000000502 INF: FPGA: Recv ZSGSRD 30247
17-03-18 02:17:06.078 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:06.078 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:06.078 -07 000000606 INF: FPGA: Recv ZSGSRD 30242
17-03-18 02:17:06.088 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:17:06.088 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:06.088 -07 000000424 INF: FPGA: Recv ZSGSRD 30241
17-03-18 02:17:06.098 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:06.098 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:06.098 -07 000000626 INF: FPGA: Recv ZSGSRD 30243
17-03-18 02:17:06.108 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:06.108 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:06.108 -07 000000455 INF: FPGA: Recv ZSGSRD 30241
17-03-18 02:17:06.118 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:06.118 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:17:06.118 -07 000000590 INF: FPGA: Recv ZPIEZORD 26093
17-03-18 02:17:06.128 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:06.128 -07 000000462 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.487 V. Piezo Error = -9.1 V.
17-03-18 02:17:06.128 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.6 um, Read 10 ADC samples: Avg = 30243 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30242 (-133.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30240 (-133.8 uncal um), Max = 30247 (-133.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:17:06.128 -07 000000462 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30243, posNoise = 4, negNoise = 3
17-03-18 02:17:06.128 -07 000000462 INF: Z Motor: After move to -0.134612, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:17:06.128 -07 000000462 INF: Z Motor: Settle wait time = 1430 ms, measure time = 106 ms (allowed 150 ms), total time = 1536 ms
17-03-18 02:17:06.128 -07 000000462 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:17:06.178 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-18 02:17:06.178 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:17:06.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:17:06.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:17:06.178 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:17:06.178 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:17:06.178 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:17:06.178 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:17:06.188 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:17:06.188 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:17:06.188 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:17:06.188 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:17:06.198 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:17:06.198 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:17:06.208 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:17:06.248 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:17:06.468 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:17:06.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:17:06.548 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:17:06.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:17:06.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:17:06.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 02:17:06.588 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:17:06.588 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 02:17:06.588 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:17:06.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:17:06.668 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:17:06.668 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:17:06.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:17:06.688 -07 000000424 INF: Autofocus start
17-03-18 02:17:06.688 -07 000000424 INF: MeasureProfile start
17-03-18 02:17:06.688 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:17:06.688 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:17:06.698 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:17:06.698 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:17:06.698 -07 000000424 INF: MeasureProfile done
17-03-18 02:17:06.698 -07 000000424 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 02:17:06.698 -07 000000424 INF: Autofocus finished
17-03-18 02:17:06.898 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:17:06.898 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:17:06.898 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.134610799814412. ----------
17-03-18 02:17:06.898 -07 000000610 INF: Cycle	97	Tile	18	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:17:06.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27883, sync = True, waitForSettling = True)
17-03-18 02:17:06.908 -07 000000610 INF: Z Motor: Moving to -0.127640 mm, started at -0.134611 mm, distance = 6.97 um
17-03-18 02:17:06.908 -07 000000610 INF: FPGA: Xmit ZDACW 27883\n [Z Motor]
17-03-18 02:17:06.908 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:17:06.918 -07 000000610 INF: FPGA: 'ZDACW 27883' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:06.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:17:06.918 -07 000000606 INF: FPGA: Recv ZDACR 27883
17-03-18 02:17:06.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:06.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:17:07.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:07.078 -07 000000576 INF: FPGA: Recv ZSGSRD 29156
17-03-18 02:17:07.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:07.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:07.088 -07 000000444 INF: FPGA: Recv ZSGSRD 29160
17-03-18 02:17:07.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:07.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:07.098 -07 000000424 INF: FPGA: Recv ZSGSRD 29163
17-03-18 02:17:07.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:07.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:07.108 -07 000000501 INF: FPGA: Recv ZSGSRD 29157
17-03-18 02:17:07.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:07.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:07.118 -07 000000579 INF: FPGA: Recv ZSGSRD 29158
17-03-18 02:17:07.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:07.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:07.128 -07 000000626 INF: FPGA: Recv ZSGSRD 29162
17-03-18 02:17:07.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:07.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:07.138 -07 000000629 INF: FPGA: Recv ZSGSRD 29161
17-03-18 02:17:07.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:07.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:07.148 -07 000000590 INF: FPGA: Recv ZSGSRD 29162
17-03-18 02:17:07.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:07.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:07.158 -07 000000461 INF: FPGA: Recv ZSGSRD 29156
17-03-18 02:17:07.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:07.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:07.168 -07 000000569 INF: FPGA: Recv ZSGSRD 29161
17-03-18 02:17:07.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:07.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:17:07.178 -07 000000576 INF: FPGA: Recv ZPIEZORD 24701
17-03-18 02:17:07.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:07.188 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.255 V. Piezo Error = -9.8 V.
17-03-18 02:17:07.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.6 um, Read 10 ADC samples: Avg = 29160 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29160 (-126.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29156 (-126.9 uncal um), Max = 29163 (-126.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:17:07.188 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29160, posNoise = 3, negNoise = 4
17-03-18 02:17:07.188 -07 000000610 INF: Z Motor: After move to -0.127640, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:17:07.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:17:07.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:17:07.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:17:07.188 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:17:07.188 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:17:07.188 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:17:07.188 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:17:07.188 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:17:07.188 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:17:07.188 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:17:07.188 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:17:07.188 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:17:07.188 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:17:07.198 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:17:07.198 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:17:07.198 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:17:07.198 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:17:07.208 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:17:07.208 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:17:07.208 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:17:07.208 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:17:07.208 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 28060 150\n [Camera]
17-03-18 02:17:07.408 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:17:07.798 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:17:07.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:17:07.808 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:17:07.808 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:17:07.808 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:17:07.808 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:17:07.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:17:07.808 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:17:07.808 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:17:07.808 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:17:07.998 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28060 779
17-03-18 02:17:08.148 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:17:08.178 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:17:08.178 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:17:08.178 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:17:08.178 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 02:17:08.178 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:17:08.178 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:17:08.188 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:17:08.188 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:17:08.188 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:17:08.188 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:17:08.338 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:17:08.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:17:08.338 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:17:08.448 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:17:08.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:17:08.448 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:17:08.458 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:17:08.458 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 02:17:08.458 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:17:08.458 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:17:08.528 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-18 02:17:08.528 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:17:08.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 28060 150' command took 2 ms to send, 1312 ms to get response, and 1318 ms overall
17-03-18 02:17:08.528 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:17:08.528 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.127653378064885. ------
17-03-18 02:17:08.528 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:17:08.528 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13349 mm
17-03-18 02:17:08.528 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:17:08.538 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:17:08.538 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:17:08.538 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 02:17:08.538 -07 000000501 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 02:17:08.538 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:17:08.538 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29161, sync = True, waitForSettling = False)
17-03-18 02:17:08.538 -07 000000569 INF: Z Motor: Moving to -0.133491 mm, started at -0.127653 mm, distance = -5.84 um
17-03-18 02:17:08.538 -07 000000461 INF: FPGA: Recv YRDPOS 151570
17-03-18 02:17:08.548 -07 000000569 INF: FPGA: Xmit ZDACW 29161\n [Z Motor]
17-03-18 02:17:08.548 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:08.548 -07 000000501 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:17:08.548 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:17:08.548 -07 000000501 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:17:08.548 -07 000000501 INF: Y Motor: Moving 1350 steps-29
17-03-18 02:17:08.558 -07 000000569 INF: FPGA: 'ZDACW 29161' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:17:08.558 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:17:08.568 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:17:08.588 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:17:08.588 -07 000000606 INF: FPGA: Recv ZDACR 29161
17-03-18 02:17:08.598 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 02:17:08.598 -07 000000569 INF: Z Motor: MoveAbsStepped took 58 ms (did NOT wait for settling yet))
17-03-18 02:17:08.758 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:17:08.758 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:17:08.858 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:17:08.858 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:17:08.858 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:17:08.858 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:17:08.858 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:17:08.858 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:17:08.858 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:17:08.868 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:17:08.868 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 529 ms.
17-03-18 02:17:08.868 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 02:17:08.898 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 3.985358,
17-03-18 02:17:08.938 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 02:17:08.948 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 392 ms overall
17-03-18 02:17:08.968 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:17:08.978 -07 000000576 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:17:08.978 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:17:08.978 -07 000000501 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:17:08.978 -07 000000501 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-18 02:17:08.978 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.143 mm/sec
17-03-18 02:17:09.928 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:17:09.928 -07 000000462 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:17:09.938 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:17:09.938 -07 000000501 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:17:09.948 -07 000000501 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:17:09.948 -07 000000501 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:17:09.948 -07 000000501 INF: Y Motor: Moved to 74.8320 after 1417 ms (table move)
17-03-18 02:17:09.958 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133491 mm (DAC = 29161)
17-03-18 02:17:09.958 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:09.958 -07 000000462 INF: FPGA: Recv ZSGSRD 30074
17-03-18 02:17:09.968 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:17:09.968 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:09.968 -07 000000467 INF: FPGA: Recv ZSGSRD 30068
17-03-18 02:17:09.978 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:09.978 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:09.978 -07 000000502 INF: FPGA: Recv ZSGSRD 30066
17-03-18 02:17:09.988 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:09.988 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:09.988 -07 000000461 INF: FPGA: Recv ZSGSRD 30074
17-03-18 02:17:09.998 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:09.998 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:09.998 -07 000000444 INF: FPGA: Recv ZSGSRD 30076
17-03-18 02:17:10.008 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:10.008 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:10.008 -07 000000455 INF: FPGA: Recv ZSGSRD 30074
17-03-18 02:17:10.018 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:10.018 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:10.018 -07 000000467 INF: FPGA: Recv ZSGSRD 30068
17-03-18 02:17:10.028 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:10.028 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:10.028 -07 000000590 INF: FPGA: Recv ZSGSRD 30062
17-03-18 02:17:10.038 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:10.038 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:10.038 -07 000000462 INF: FPGA: Recv ZSGSRD 30063
17-03-18 02:17:10.048 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:10.048 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:10.048 -07 000000569 INF: FPGA: Recv ZSGSRD 30070
17-03-18 02:17:10.058 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:10.058 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:17:10.058 -07 000000430 INF: FPGA: Recv ZPIEZORD 25902
17-03-18 02:17:10.068 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:10.068 -07 000000561 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.450 V. Piezo Error = -9.2 V.
17-03-18 02:17:10.068 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.5 um, Read 10 ADC samples: Avg = 30070 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30069 (-132.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30062 (-132.7 uncal um), Max = 30076 (-132.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:17:10.068 -07 000000561 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30070, posNoise = 6, negNoise = 8
17-03-18 02:17:10.068 -07 000000561 INF: Z Motor: After move to -0.133491, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:17:10.068 -07 000000561 INF: Z Motor: Settle wait time = 1420 ms, measure time = 110 ms (allowed 150 ms), total time = 1530 ms
17-03-18 02:17:10.068 -07 000000561 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:17:10.108 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1572 ms
17-03-18 02:17:10.108 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:17:10.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:17:10.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:17:10.108 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:17:10.108 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:17:10.108 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:17:10.108 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:17:10.108 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:17:10.108 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:17:10.118 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:17:10.118 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:17:10.128 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:17:10.128 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 02:17:10.128 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:17:10.178 -07 000000430 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:17:10.478 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:17:10.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:17:10.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:17:10.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 02:17:10.518 -07 000000462 INF: FPGA: Recv @CAMSNAP 383
17-03-18 02:17:10.518 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 02:17:10.518 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 388 ms overall
17-03-18 02:17:10.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:17:10.598 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:17:10.598 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:17:10.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:17:10.618 -07 000000561 INF: Autofocus start
17-03-18 02:17:10.618 -07 000000561 INF: MeasureProfile start
17-03-18 02:17:10.618 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:17:10.618 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:17:10.628 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:17:10.628 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:17:10.628 -07 000000561 INF: MeasureProfile done
17-03-18 02:17:10.628 -07 000000561 INF: X=32  Z correction [um]=0.1299841
17-03-18 02:17:10.628 -07 000000561 INF: Autofocus finished
17-03-18 02:17:10.828 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:17:10.828 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 02:17:10.828 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.133499411113887. ----------
17-03-18 02:17:10.838 -07 000000610 INF: Cycle	97	Tile	19	Exposure Settings		A	394	G	189	T	189	C	394
17-03-18 02:17:10.838 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27702, sync = True, waitForSettling = True)
17-03-18 02:17:10.838 -07 000000610 INF: Z Motor: Moving to -0.126812 mm, started at -0.133499 mm, distance = 6.69 um
17-03-18 02:17:10.838 -07 000000610 INF: FPGA: Xmit ZDACW 27702\n [Z Motor]
17-03-18 02:17:10.838 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:17:10.848 -07 000000610 INF: FPGA: 'ZDACW 27702' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:17:10.848 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:17:10.848 -07 000000455 INF: FPGA: Recv ZDACR 27702
17-03-18 02:17:10.858 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:10.858 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:17:11.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:11.008 -07 000000576 INF: FPGA: Recv ZSGSRD 29030
17-03-18 02:17:11.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:17:11.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:11.018 -07 000000626 INF: FPGA: Recv ZSGSRD 29031
17-03-18 02:17:11.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:11.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:11.028 -07 000000629 INF: FPGA: Recv ZSGSRD 29026
17-03-18 02:17:11.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:11.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:11.038 -07 000000467 INF: FPGA: Recv ZSGSRD 29030
17-03-18 02:17:11.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:11.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:11.048 -07 000000444 INF: FPGA: Recv ZSGSRD 29034
17-03-18 02:17:11.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:11.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:11.058 -07 000000430 INF: FPGA: Recv ZSGSRD 29034
17-03-18 02:17:11.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:11.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:11.068 -07 000000618 INF: FPGA: Recv ZSGSRD 29029
17-03-18 02:17:11.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:11.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:11.078 -07 000000569 INF: FPGA: Recv ZSGSRD 29025
17-03-18 02:17:11.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:11.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:11.088 -07 000000467 INF: FPGA: Recv ZSGSRD 29030
17-03-18 02:17:11.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:11.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:17:11.098 -07 000000424 INF: FPGA: Recv ZSGSRD 29032
17-03-18 02:17:11.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:11.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:17:11.108 -07 000000576 INF: FPGA: Recv ZPIEZORD 24563
17-03-18 02:17:11.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:17:11.118 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.227 V. Piezo Error = -9.8 V.
17-03-18 02:17:11.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.8 um, Read 10 ADC samples: Avg = 29030 (-126.0 uncal um), Error = 0.8 uncal um, Median = 29030 (-126.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29025 (-126.0 uncal um), Max = 29034 (-126.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:17:11.118 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29030, posNoise = 4, negNoise = 5
17-03-18 02:17:11.118 -07 000000610 INF: Z Motor: After move to -0.126812, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:17:11.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:17:11.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:17:11.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:17:11.118 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:17:11.118 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:17:11.118 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:17:11.118 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:17:11.118 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:17:11.118 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:17:11.118 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:17:11.118 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:17:11.118 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 02:17:11.118 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:17:11.128 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:17:11.128 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:17:11.128 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:17:11.128 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:17:11.128 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:17:11.128 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:17:11.138 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:17:11.138 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:17:11.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 394 394 189 189 27878 150\n [Camera]
17-03-18 02:17:11.338 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:17:11.468 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:17:11.468 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 96. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1468, R2=1526, Total=2994. Warn if over 250 bubbles per interval.
17-03-18 02:17:11.728 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-18 02:17:11.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-18 02:17:11.728 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:17:11.728 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:17:11.728 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:17:11.728 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-18 02:17:11.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-18 02:17:11.738 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:17:11.738 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:17:11.738 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:17:11.918 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27878 779
17-03-18 02:17:12.068 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-18 02:17:12.108 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 02:17:12.108 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:17:12.108 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:17:12.118 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 02:17:12.118 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 02:17:12.118 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:17:12.118 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:17:12.118 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:17:12.118 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:17:12.128 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:17:12.258 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1118
17-03-18 02:17:12.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1118
17-03-18 02:17:12.378 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1118
17-03-18 02:17:12.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1118
17-03-18 02:17:12.378 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:17:12.378 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:17:12.378 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:17:12.378 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 02:17:12.388 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:17:12.388 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:17:12.448 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-18 02:17:12.458 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:17:12.458 -07 000000610 INF: FPGA: 'CAMDBLSNAP 394 394 189 189 27878 150' command took 2 ms to send, 1310 ms to get response, and 1317 ms overall
17-03-18 02:17:12.778 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:17:12.778 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:17:12.778 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:17:12.788 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 02:17:12.788 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:17:12.788 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:17:12.788 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:17:12.788 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:17:12.788 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 02:17:12.788 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 02:17:12.798 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 02:17:12.828 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 02:17:12.828 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 02:17:12.878 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 02:17:12.888 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-18 02:17:12.888 -07 000000610 INF: Imaging Cycle 97: ScanTilesCommand Cycle 97 time end. Duration was 160195 ms.
17-03-18 02:17:12.888 -07 000000610 INF: =================== Cycle #97 ===================
17-03-18 02:17:12.888 -07 000000610 INF: ===================  ===================
17-03-18 02:17:12.888 -07 000000590 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 02:17:12.888 -07 000000561 INF: FPGA: Recv EXLED1ADCR 24
17-03-18 02:17:12.898 -07 000000590 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:17:12.898 -07 000000590 INF: GreenLED: Using Green data: Photodiode ADC 24 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.7 mW
17-03-18 02:17:12.898 -07 000000590 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 97, FrontChillerTemperature: 3.985358, FrontChillerHeatSinkTemperature: 0.178306, AmbientTemperature: 18.75927, FlowCellCompartmentTemperature: 21.99836, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.57202, GreenLEDSensorTemperature: 27.16449, PhotodiodePowerAdcGreen: 24, PhotodiodePowerMwGreen: 1.744678
17-03-18 02:17:12.968 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.