17-03-18 02:21:42.285 -07 000000610 INF: =================== Cycle #99 ===================
17-03-18 02:21:42.295 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 02:21:42.295 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-18 02:21:42.295 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:21:42.295 -07 000000501 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:21:42.305 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:21:42.305 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:21:42.305 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 02:21:42.305 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 02:21:42.305 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 02:21:42.415 -07 000000461 INF: FPGA: Recv YMVTO 154377 871
17-03-18 02:21:42.415 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 116 ms overall
17-03-18 02:21:42.415 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-18 02:21:42.415 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 871 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-18 02:21:42.415 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.549 mm, average velocity = 4.729 mm/sec
17-03-18 02:21:42.485 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 4.007176,
17-03-18 02:21:45.415 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:21:45.415 -07 000000467 INF: FPGA: Recv YRDPOS 154379
17-03-18 02:21:45.425 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:21:45.425 -07 000000610 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:21:45.445 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000209, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:21:45.445 -07 000000610 INF: Y Motor: Position error after settling = 0 encoder counts (0.000 mm), Delta during settling = 2 counts (0.001 mm)
17-03-18 02:21:45.445 -07 000000610 INF: Y Motor: Moved to 75.3804 after 3157 ms
17-03-18 02:21:45.455 -07 000000610 INF: =================== Cycle #99, Flow Cell Temp 60° ===================
17-03-18 02:21:45.455 -07 000000610 INF: =================== Cycle #99, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 02:21:45.455 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 02:21:45.455 -07 000000618 INF: FPGA: Recv TEC2TEMP 
17-03-18 02:21:45.465 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:21:45.465 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:21:45.465 -07 000000424 INF: FPGA: Recv TEC2EN 
17-03-18 02:21:45.475 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:21:45.475 -07 000000610 INF: =================== Cycle #99, Flow Cell Temp 60° ===================
17-03-18 02:21:45.475 -07 000000610 INF: =================== Cycle #99 ===================
17-03-18 02:21:45.475 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:21:45.475 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:21:45.505 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 02:21:45.505 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 02:21:45.505 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:21:45.805 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:21:45.825 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 02:21:45.825 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 02:21:45.875 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:21:45.895 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:21:45.895 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:21:45.995 -07 000000610 INF: =================== Cycle #99, Pumping Reagent PR2 (3) ===================
17-03-18 02:21:45.995 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 02:21:45.995 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:21:46.025 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:21:46.025 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:21:46.025 -07 000000610 INF: =================== Cycle #99, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:21:46.155 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 02:21:46.195 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:21:46.475 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:21:46.475 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1480, R2=1541, Total=3021. Warn if over 250 bubbles per interval.
17-03-18 02:21:47.845 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 3.981281,
17-03-18 02:21:49.325 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:21:49.355 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:21:49.775 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:21:49.805 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:21:50.225 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:21:50.255 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:21:50.255 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 02:21:50.255 -07 000000610 INF: =================== Cycle #99, Pumping Reagent PR2 (3) ===================
17-03-18 02:21:50.385 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:21:50.415 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:21:50.415 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:21:50.545 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:21:50.575 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:21:50.575 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:21:50.575 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:21:50.705 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:21:50.735 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:21:51.165 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:21:51.195 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:21:51.195 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:21:51.195 -07 000000610 INF: =================== Cycle #99 ===================
17-03-18 02:21:51.475 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 10 R1 9
17-03-18 02:21:51.475 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=9, R2=10, Total=19. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1489, R2=1551, Total=3040. Warn if over 250 bubbles per interval.
17-03-18 02:21:52.415 -07 000000610 INF: AsyncDelayTimer waited 1209ms
17-03-18 02:21:52.415 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 02:21:52.415 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:21:52.435 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:21:52.435 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 02:21:52.435 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 02:21:52.565 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:21:52.585 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 02:21:52.585 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 02:21:52.635 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:21:52.655 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 02:21:52.655 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:21:52.755 -07 000000610 INF: =================== Cycle #99, Pumping Reagent CMS (4) ===================
17-03-18 02:21:52.755 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:21:52.755 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:21:52.785 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:21:52.785 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:21:52.785 -07 000000610 INF: =================== Cycle #99, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 02:21:52.915 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:21:52.955 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:21:53.205 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 4.000345,
17-03-18 02:21:54.395 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:21:54.425 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:21:54.845 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:21:54.875 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:21:54.875 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 02:21:54.875 -07 000000610 INF: =================== Cycle #99, Pumping Reagent CMS (4) ===================
17-03-18 02:21:55.005 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:21:55.035 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:21:55.035 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:21:55.165 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:21:55.195 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:21:55.195 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:21:55.195 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:21:55.325 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:21:55.355 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:21:55.785 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:21:55.815 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:21:55.815 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:21:55.815 -07 000000610 INF: =================== Cycle #99 ===================
17-03-18 02:21:56.475 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:21:56.475 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1489, R2=1551, Total=3040. Warn if over 250 bubbles per interval.
17-03-18 02:21:57.035 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 02:21:57.035 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:21:57.035 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:21:57.055 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 02:21:57.055 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 02:21:57.055 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 02:21:57.205 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:21:57.225 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 02:21:57.225 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 02:21:57.275 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:21:57.295 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:21:57.295 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:21:57.395 -07 000000610 INF: =================== Cycle #99, Pumping Reagent PR2 (3) ===================
17-03-18 02:21:57.395 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:21:57.395 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:21:57.425 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:21:57.425 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:21:57.425 -07 000000610 INF: =================== Cycle #99, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:21:57.555 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:21:57.595 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:21:58.465 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:21:58.495 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:21:58.495 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 02:21:58.495 -07 000000610 INF: =================== Cycle #99, Pumping Reagent PR2 (3) ===================
17-03-18 02:21:58.565 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 3.993549,
17-03-18 02:21:58.625 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:21:58.655 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:21:58.655 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:21:58.785 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:21:58.815 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:21:58.815 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:21:58.815 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:21:58.945 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:21:58.975 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:21:59.405 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:21:59.435 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:21:59.435 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:21:59.435 -07 000000610 INF: =================== Cycle #99 ===================
17-03-18 02:21:59.435 -07 000000462 INF: WaitCommand(10000) start
17-03-18 02:21:59.435 -07 000000444 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:21:59.435 -07 000000444 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:22:00.655 -07 000000444 INF: AsyncDelayTimer waited 1216ms
17-03-18 02:22:00.655 -07 000000444 INF: LanePump: Xmit /1?\r
17-03-18 02:22:00.685 -07 000000444 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:22:00.685 -07 000000444 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:22:00.815 -07 000000444 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:22:00.855 -07 000000444 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:22:01.475 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:22:01.475 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1489, R2=1551, Total=3040. Warn if over 250 bubbles per interval.
17-03-18 02:22:02.385 -07 000000444 INF: LanePump: Xmit /1Q\r
17-03-18 02:22:02.415 -07 000000444 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:22:02.835 -07 000000444 INF: LanePump: Xmit /1Q\r
17-03-18 02:22:02.865 -07 000000444 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:22:02.865 -07 000000444 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 02:22:02.865 -07 000000444 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:22:02.865 -07 000000444 INF: ===================  ===================
17-03-18 02:22:03.925 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 3.960826,
17-03-18 02:22:06.475 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:22:06.475 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1489, R2=1551, Total=3040. Warn if over 250 bubbles per interval.
17-03-18 02:22:09.285 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 3.978563,
17-03-18 02:22:09.445 -07 000000462 INF: WaitCommand(10000) end
17-03-18 02:22:09.445 -07 000000610 INF: =================== Cycle #99, Pumping Reagent PR2 (3) ===================
17-03-18 02:22:09.445 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 02:22:09.445 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:22:09.475 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:22:09.475 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:22:09.475 -07 000000610 INF: =================== Cycle #99, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:22:09.605 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 02:22:09.645 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:22:11.475 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:22:11.475 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1489, R2=1551, Total=3040. Warn if over 250 bubbles per interval.
17-03-18 02:22:14.645 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 3.996267,
17-03-18 02:22:15.775 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:22:15.805 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:22:16.225 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:22:16.255 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:22:16.475 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 02:22:16.475 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:22:16.675 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:22:16.705 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:22:17.125 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:22:17.155 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:22:17.575 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:22:17.605 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:22:17.605 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 02:22:17.605 -07 000000610 INF: =================== Cycle #99, Pumping Reagent PR2 (3) ===================
17-03-18 02:22:17.735 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:22:17.765 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:22:17.765 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:22:17.895 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:22:17.925 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:22:17.925 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:22:17.925 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:22:18.055 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:22:18.085 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:22:18.515 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:22:18.545 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:22:18.545 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:22:18.545 -07 000000610 INF: =================== Cycle #99 ===================
17-03-18 02:22:19.765 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:22:19.765 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 02:22:19.765 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:22:19.785 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:22:19.785 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 02:22:19.785 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 02:22:19.995 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:22:20.005 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 3.994908,
17-03-18 02:22:20.015 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 02:22:20.015 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 02:22:20.065 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:22:20.085 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 02:22:20.085 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:22:20.185 -07 000000610 INF: =================== Cycle #99, Pumping Reagent IMT (1) ===================
17-03-18 02:22:20.185 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:22:20.185 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:22:20.215 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:22:20.215 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:22:20.215 -07 000000610 INF: =================== Cycle #99, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 02:22:20.345 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:22:20.385 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:22:21.475 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:22:21.475 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:22:21.825 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:22:21.855 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:22:22.275 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:22:22.305 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:22:22.305 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 02:22:22.305 -07 000000610 INF: =================== Cycle #99, Pumping Reagent IMT (1) ===================
17-03-18 02:22:22.435 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:22:22.465 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:22:22.465 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:22:22.595 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:22:22.625 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:22:22.625 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:22:22.625 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:22:22.755 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:22:22.785 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:22:23.215 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:22:23.245 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:22:23.245 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:22:23.245 -07 000000610 INF: =================== Cycle #99 ===================
17-03-18 02:22:24.465 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:22:24.465 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:22:24.465 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:22:24.485 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 02:22:24.485 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 02:22:24.485 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:22:24.715 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:22:24.735 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 02:22:24.735 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 02:22:24.785 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:22:24.805 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:22:24.805 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:22:24.905 -07 000000610 INF: =================== Cycle #99, Pumping Reagent PR2 (3) ===================
17-03-18 02:22:24.905 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:22:24.905 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:22:24.935 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:22:24.935 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:22:24.935 -07 000000610 INF: =================== Cycle #99, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:22:25.065 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:22:25.105 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:22:25.365 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 4.027603,
17-03-18 02:22:25.975 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:22:26.005 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:22:26.005 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 02:22:26.005 -07 000000610 INF: =================== Cycle #99, Pumping Reagent PR2 (3) ===================
17-03-18 02:22:26.135 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:22:26.165 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:22:26.165 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:22:26.295 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:22:26.325 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:22:26.325 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:22:26.325 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:22:26.455 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:22:26.475 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:22:26.475 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:22:26.485 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:22:26.915 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:22:26.945 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:22:26.945 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:22:26.945 -07 000000610 INF: =================== Cycle #99 ===================
17-03-18 02:22:26.945 -07 000000610 INF: =================== Cycle #99, Flow Cell Temp 65° ===================
17-03-18 02:22:26.945 -07 000000610 INF: =================== Cycle #99, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 02:22:26.945 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 02:22:26.945 -07 000000590 INF: FPGA: Recv TEC2TEMP 
17-03-18 02:22:26.955 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:22:26.955 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:22:26.955 -07 000000467 INF: FPGA: Recv TEC2EN 
17-03-18 02:22:26.965 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:22:26.965 -07 000000610 INF: =================== Cycle #99, Flow Cell Temp 65° ===================
17-03-18 02:22:26.965 -07 000000610 INF: =================== Cycle #99 ===================
17-03-18 02:22:26.965 -07 000000610 INF: WaitCommand(30000) start
17-03-18 02:22:30.725 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 3.996267,
17-03-18 02:22:31.475 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:22:31.475 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:22:36.084 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 4.003063,
17-03-18 02:22:36.474 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:22:36.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:22:41.444 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 3.989471,
17-03-18 02:22:41.474 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:22:41.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:22:46.474 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:22:46.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:22:46.804 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 3.929434,
17-03-18 02:22:51.474 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:22:51.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:22:52.164 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 3.959467,
17-03-18 02:22:56.474 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:22:56.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:22:56.974 -07 000000610 INF: WaitCommand(30000) end
17-03-18 02:22:56.974 -07 000000610 INF: =================== Cycle #99, Pumping Reagent PR2 (3) ===================
17-03-18 02:22:56.974 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 02:22:57.074 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:22:57.104 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:22:57.104 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:22:57.104 -07 000000610 INF: =================== Cycle #99, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:22:57.234 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 02:22:57.274 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:22:57.524 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 3.970374,
17-03-18 02:22:57.814 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:22:57.844 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:22:57.844 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-18 02:22:57.844 -07 000000610 INF: =================== Cycle #99, Pumping Reagent PR2 (3) ===================
17-03-18 02:22:57.974 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:22:58.004 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:22:58.004 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:22:58.134 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:22:58.164 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:22:58.164 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:22:58.164 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:22:58.294 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:22:58.324 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:22:58.754 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:22:58.784 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:22:58.784 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:22:58.784 -07 000000610 INF: =================== Cycle #99 ===================
17-03-18 02:22:58.784 -07 000000501 INF: WaitCommand(30000) start
17-03-18 02:22:58.784 -07 000000569 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:22:58.784 -07 000000569 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:23:00.004 -07 000000569 INF: AsyncDelayTimer waited 1216ms
17-03-18 02:23:00.004 -07 000000569 INF: LanePump: Xmit /1?\r
17-03-18 02:23:00.034 -07 000000569 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:23:00.034 -07 000000569 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:23:00.164 -07 000000569 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:23:00.204 -07 000000569 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:23:01.474 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:23:01.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:23:02.544 -07 000000569 INF: LanePump: Xmit /1Q\r
17-03-18 02:23:02.574 -07 000000569 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:23:02.884 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 3.974486,
17-03-18 02:23:02.994 -07 000000569 INF: LanePump: Xmit /1Q\r
17-03-18 02:23:03.024 -07 000000569 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:23:03.024 -07 000000569 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 02:23:03.024 -07 000000569 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:23:03.024 -07 000000569 INF: ===================  ===================
17-03-18 02:23:06.474 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:23:06.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:23:08.244 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 3.988112,
17-03-18 02:23:11.474 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:23:11.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:23:13.604 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 4.037119,
17-03-18 02:23:16.474 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:23:16.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:23:18.964 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 4.047997,
17-03-18 02:23:21.474 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:23:21.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:23:24.324 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 3.997626,
17-03-18 02:23:26.474 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:23:26.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:23:28.794 -07 000000501 INF: WaitCommand(30000) end
17-03-18 02:23:28.794 -07 000000610 INF: =================== Cycle #99, Flow Cell Temp 22° ===================
17-03-18 02:23:28.794 -07 000000610 INF: =================== Cycle #99, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 02:23:28.984 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:23:28.984 -07 000000569 INF: FPGA: Recv TEC2EN 
17-03-18 02:23:28.994 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:23:28.994 -07 000000610 INF: =================== Cycle #99, Flow Cell Temp 22° ===================
17-03-18 02:23:28.994 -07 000000610 INF: =================== Cycle #99 ===================
17-03-18 02:23:28.994 -07 000000610 INF: =================== Cycle #99, Pumping Reagent PR2 (3) ===================
17-03-18 02:23:28.994 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 02:23:28.994 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:23:29.034 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:23:29.034 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:23:29.034 -07 000000610 INF: =================== Cycle #99, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:23:29.164 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 02:23:29.204 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:23:29.684 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 3.986717,
17-03-18 02:23:31.474 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:23:31.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:23:32.334 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:23:32.364 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:23:32.784 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:23:32.814 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:23:33.234 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:23:33.264 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:23:33.264 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 02:23:33.264 -07 000000610 INF: =================== Cycle #99, Pumping Reagent PR2 (3) ===================
17-03-18 02:23:33.394 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:23:33.424 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:23:33.424 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:23:33.554 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:23:33.584 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:23:33.584 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:23:33.584 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:23:33.714 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:23:33.744 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:23:34.174 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:23:34.204 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:23:34.204 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:23:34.204 -07 000000610 INF: =================== Cycle #99 ===================
17-03-18 02:23:35.044 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 3.981281,
17-03-18 02:23:35.424 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 02:23:35.424 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 02:23:35.424 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:23:35.444 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:23:35.444 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 02:23:35.444 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 02:23:35.594 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:23:35.614 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 02:23:35.614 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 02:23:35.664 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:23:35.684 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 02:23:35.684 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:23:35.784 -07 000000610 INF: =================== Cycle #99, Pumping Reagent USM (2) ===================
17-03-18 02:23:35.784 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:23:35.784 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:23:35.814 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:23:35.814 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:23:35.814 -07 000000610 INF: =================== Cycle #99, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 02:23:35.944 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:23:35.984 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:23:36.474 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:23:36.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:23:37.424 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:23:37.454 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:23:37.874 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:23:37.904 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:23:37.904 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 02:23:37.904 -07 000000610 INF: =================== Cycle #99, Pumping Reagent USM (2) ===================
17-03-18 02:23:38.034 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:23:38.064 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:23:38.064 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:23:38.194 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:23:38.224 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:23:38.224 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:23:38.224 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:23:38.354 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:23:38.384 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:23:38.814 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:23:38.844 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:23:38.844 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:23:38.844 -07 000000610 INF: =================== Cycle #99 ===================
17-03-18 02:23:40.064 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:23:40.064 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:23:40.064 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:23:40.084 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 02:23:40.084 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 02:23:40.084 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:23:40.234 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:23:40.254 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 02:23:40.254 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 02:23:40.304 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:23:40.324 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:23:40.324 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:23:40.404 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 4.001704,
17-03-18 02:23:40.424 -07 000000610 INF: =================== Cycle #99, Pumping Reagent PR2 (3) ===================
17-03-18 02:23:40.424 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:23:40.424 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:23:40.454 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:23:40.454 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:23:40.454 -07 000000610 INF: =================== Cycle #99, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:23:40.584 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:23:40.624 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:23:41.474 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:23:41.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:23:41.494 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:23:41.524 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:23:41.524 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 02:23:41.524 -07 000000610 INF: =================== Cycle #99, Pumping Reagent PR2 (3) ===================
17-03-18 02:23:41.654 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:23:41.684 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:23:41.684 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:23:41.814 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:23:41.844 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:23:41.844 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:23:41.844 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:23:41.974 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:23:42.004 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:23:42.434 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:23:42.464 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:23:42.464 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:23:42.464 -07 000000610 INF: =================== Cycle #99 ===================
17-03-18 02:23:42.464 -07 000000561 INF: WaitCommand(10000) start
17-03-18 02:23:42.464 -07 000000590 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:23:42.464 -07 000000590 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:23:43.684 -07 000000590 INF: AsyncDelayTimer waited 1216ms
17-03-18 02:23:43.684 -07 000000590 INF: LanePump: Xmit /1?\r
17-03-18 02:23:43.714 -07 000000590 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:23:43.714 -07 000000590 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:23:43.844 -07 000000590 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:23:43.884 -07 000000590 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:23:45.414 -07 000000590 INF: LanePump: Xmit /1Q\r
17-03-18 02:23:45.444 -07 000000590 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:23:45.764 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 4.012614,
17-03-18 02:23:45.864 -07 000000590 INF: LanePump: Xmit /1Q\r
17-03-18 02:23:45.894 -07 000000590 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:23:45.894 -07 000000590 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 02:23:45.894 -07 000000590 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:23:45.894 -07 000000590 INF: ===================  ===================
17-03-18 02:23:46.474 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:23:46.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:23:51.124 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 4.037119,
17-03-18 02:23:51.474 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:23:51.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:23:52.474 -07 000000561 INF: WaitCommand(10000) end
17-03-18 02:23:52.474 -07 000000610 INF: =================== Cycle #99, Imaging ===================
17-03-18 02:23:52.474 -07 000000610 INF: Imaging Cycle 99: ScanTilesCommand Cycle 99 time start.
17-03-18 02:23:52.474 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 02:23:52.474 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:23:52.504 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:23:52.504 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 02:23:52.504 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 02:23:52.804 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:23:52.824 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 02:23:52.824 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 02:23:52.874 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:23:52.894 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 02:23:52.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:23:52.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:23:52.894 -07 000000467 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 02:23:52.894 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:23:52.894 -07 000000467 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 02:23:52.904 -07 000000618 INF: FPGA: Recv EXLED1ON 
17-03-18 02:23:52.904 -07 000000467 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 02:23:52.904 -07 000000467 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 02:23:52.904 -07 000000444 INF: FPGA: Recv EXLED1ADCR 23173
17-03-18 02:23:52.914 -07 000000467 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:23:52.914 -07 000000467 INF: RedLED: Using Red data: Photodiode ADC 23173 --> 7.4 mW (old method), or 205.4 mW (new method). Difference = 197.9 mW
17-03-18 02:23:52.914 -07 000000467 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 02:23:52.914 -07 000000430 INF: FPGA: Recv EXLED1OFF 
17-03-18 02:23:52.924 -07 000000467 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:23:52.924 -07 000000467 INF: RedLED: LED was on for 20 ms
17-03-18 02:23:52.924 -07 000000467 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-18 02:23:52.924 -07 000000467 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 02:23:52.924 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:23:52.924 -07 000000467 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 02:23:52.924 -07 000000424 INF: FPGA: Recv EXLED2ON 
17-03-18 02:23:52.934 -07 000000467 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:23:52.934 -07 000000467 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 02:23:52.934 -07 000000618 INF: FPGA: Recv EXLED1ADCR 2097
17-03-18 02:23:52.944 -07 000000467 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:23:52.944 -07 000000467 INF: GreenLED: Using Green data: Photodiode ADC 2097 --> 0.9 mW (old method), or 182.2 mW (new method). Difference = 181.3 mW
17-03-18 02:23:52.944 -07 000000467 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 02:23:52.944 -07 000000501 INF: FPGA: Recv EXLED2OFF 
17-03-18 02:23:52.954 -07 000000467 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:23:52.954 -07 000000467 INF: GreenLED: LED was on for 20 ms
17-03-18 02:23:52.954 -07 000000467 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 02:23:52.954 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 02:23:52.954 -07 000000461 INF: FPGA: Recv EMCUR 
17-03-18 02:23:52.964 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:23:52.964 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 02:23:53.464 -07 000000629 INF: FPGA: Recv EMOUT
17-03-18 02:23:53.464 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 02:23:53.464 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 02:23:53.464 -07 000000569 INF: FPGA: Recv EMCUR 
17-03-18 02:23:53.474 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:23:53.474 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:23:53.474 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38037109375, Z-Position -0.126709018880046. ------
17-03-18 02:23:53.474 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:23:53.474 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17885 mm
17-03-18 02:23:53.474 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:23:53.474 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:23:53.474 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 39071, sync = True, waitForSettling = False)
17-03-18 02:23:53.474 -07 000000591 INF: Z Motor: Moving to -0.178856 mm, started at -0.126709 mm, distance = -52.15 um
17-03-18 02:23:53.474 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 02:23:53.474 -07 000000462 INF: Y Motor: Moving to 59.9126 mm, started at 75.3804 mm, delta = -15.4678 mm
17-03-18 02:23:53.484 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:23:53.484 -07 000000591 INF: FPGA: Xmit ZDACW 39071\n [Z Motor]
17-03-18 02:23:53.484 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:23:53.494 -07 000000591 INF: FPGA: 'ZDACW 39071' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:23:53.494 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:23:53.494 -07 000000569 INF: FPGA: Recv YRDPOS 154379
17-03-18 02:23:53.504 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:23:53.504 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:23:53.504 -07 000000462 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:23:53.504 -07 000000462 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 02:23:53.504 -07 000000462 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 02:23:53.514 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:23:53.514 -07 000000502 INF: FPGA: Recv ZDACR 39071
17-03-18 02:23:53.524 -07 000000462 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 02:23:53.524 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:23:53.524 -07 000000591 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 02:23:53.704 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:23:53.704 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 02:23:55.204 -07 000000606 INF: FPGA: Recv YMVTO 122703 24776
17-03-18 02:23:55.204 -07 000000462 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1705 ms overall
17-03-18 02:23:55.204 -07 000000462 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 02:23:55.204 -07 000000462 INF: Y Motor: To move from 75.380 to 59.913 (-15.468 mm) should take 24748 steps, but required 24776 steps (15.485 mm). Slippage = 0.018 mm (0.00%).
17-03-18 02:23:55.204 -07 000000462 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1705 ms, distance = 15.468 mm, average velocity = 9.072 mm/sec
17-03-18 02:23:56.474 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:23:56.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:23:56.484 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 4.031682,
17-03-18 02:23:58.054 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:23:58.054 -07 000000629 INF: FPGA: Recv YRDPOS 122696
17-03-18 02:23:58.064 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:23:58.064 -07 000000462 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:23:58.084 -07 000000462 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:23:58.084 -07 000000462 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 02:23:58.084 -07 000000462 INF: Y Motor: Moved to 59.9102 after 4610 ms
17-03-18 02:23:58.094 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178856 mm (DAC = 39071)
17-03-18 02:23:58.094 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:23:58.094 -07 000000576 INF: FPGA: Recv ZSGSRD 37136
17-03-18 02:23:58.104 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:23:58.104 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:23:58.104 -07 000000461 INF: FPGA: Recv ZSGSRD 37129
17-03-18 02:23:58.114 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:23:58.114 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:23:58.114 -07 000000444 INF: FPGA: Recv ZSGSRD 37130
17-03-18 02:23:58.124 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:23:58.124 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:23:58.124 -07 000000430 INF: FPGA: Recv ZSGSRD 37129
17-03-18 02:23:58.134 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:23:58.134 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:23:58.134 -07 000000569 INF: FPGA: Recv ZSGSRD 37136
17-03-18 02:23:58.144 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:23:58.144 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:23:58.144 -07 000000501 INF: FPGA: Recv ZSGSRD 37130
17-03-18 02:23:58.154 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:23:58.154 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:23:58.154 -07 000000590 INF: FPGA: Recv ZSGSRD 37132
17-03-18 02:23:58.164 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:23:58.164 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:23:58.164 -07 000000462 INF: FPGA: Recv ZSGSRD 37132
17-03-18 02:23:58.174 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:23:58.174 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:23:58.174 -07 000000502 INF: FPGA: Recv ZSGSRD 37133
17-03-18 02:23:58.184 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:23:58.184 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:23:58.184 -07 000000569 INF: FPGA: Recv ZSGSRD 37135
17-03-18 02:23:58.194 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:23:58.194 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:23:58.194 -07 000000591 INF: FPGA: Recv ZPIEZORD 33379
17-03-18 02:23:58.204 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:23:58.204 -07 000000455 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.962 V. Piezo Error = -8.3 V.
17-03-18 02:23:58.204 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.9 um, Read 10 ADC samples: Avg = 37132 (-178.0 uncal um), Error = 0.9 uncal um, Median = 37132 (-178.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 37129 (-178.0 uncal um), Max = 37136 (-178.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:23:58.204 -07 000000455 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37132, posNoise = 4, negNoise = 3
17-03-18 02:23:58.204 -07 000000455 INF: Z Motor: After move to -0.178856, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:23:58.204 -07 000000455 INF: Z Motor: Settle wait time = 4615 ms, measure time = 106 ms (allowed 150 ms), total time = 4721 ms
17-03-18 02:23:58.204 -07 000000455 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:23:58.254 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4774 ms
17-03-18 02:23:58.254 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:23:58.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:23:58.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:23:58.254 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:23:58.254 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:23:58.254 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:23:58.254 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:23:58.254 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:23:58.254 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 02:23:58.284 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 02:23:58.284 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:23:58.284 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 02:23:58.284 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:23:58.294 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:23:58.294 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 02:23:58.304 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:23:58.344 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:23:58.644 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:23:58.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:23:58.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:23:58.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113715168, 0x0, 559484976) start.
17-03-18 02:23:58.684 -07 000000461 INF: FPGA: Recv @CAMSNAP 383
17-03-18 02:23:58.684 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 02:23:58.694 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall
17-03-18 02:23:58.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113715168, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:23:58.774 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:23:58.774 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:23:58.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-18 02:23:58.794 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:23:58.794 -07 000000424 INF: Image SNR check: start
17-03-18 02:23:58.794 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:23:58.804 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:23:58.804 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:23:58.804 -07 000000424 INF: Image SNR check: pass  [peak (Max-Min)=152.29]
17-03-18 02:23:58.804 -07 000000424 INF: Autofocus start
17-03-18 02:23:58.804 -07 000000424 INF: MeasureProfile start
17-03-18 02:23:58.814 -07 000000424 INF: MeasureProfile done
17-03-18 02:23:58.814 -07 000000424 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:23:58.814 -07 000000424 INF: Autofocus finished
17-03-18 02:23:59.004 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:23:59.004 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:23:59.004 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.178867197259003. ----------
17-03-18 02:23:59.004 -07 000000610 INF: Cycle	99	Tile	1	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:23:59.014 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37568, sync = True, waitForSettling = True)
17-03-18 02:23:59.014 -07 000000610 INF: Z Motor: Moving to -0.171975 mm, started at -0.178867 mm, distance = 6.89 um
17-03-18 02:23:59.014 -07 000000610 INF: FPGA: Xmit ZDACW 37568\n [Z Motor]
17-03-18 02:23:59.014 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:23:59.024 -07 000000610 INF: FPGA: 'ZDACW 37568' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:23:59.024 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:23:59.024 -07 000000591 INF: FPGA: Recv ZDACR 37568
17-03-18 02:23:59.034 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:23:59.034 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:23:59.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:23:59.184 -07 000000461 INF: FPGA: Recv ZSGSRD 36059
17-03-18 02:23:59.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:23:59.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:23:59.194 -07 000000455 INF: FPGA: Recv ZSGSRD 36058
17-03-18 02:23:59.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:23:59.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:23:59.204 -07 000000579 INF: FPGA: Recv ZSGSRD 36056
17-03-18 02:23:59.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:23:59.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:23:59.214 -07 000000502 INF: FPGA: Recv ZSGSRD 36061
17-03-18 02:23:59.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:23:59.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:23:59.224 -07 000000626 INF: FPGA: Recv ZSGSRD 36060
17-03-18 02:23:59.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:23:59.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:23:59.234 -07 000000512 INF: FPGA: Recv ZSGSRD 36053
17-03-18 02:23:59.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:23:59.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:23:59.244 -07 000000591 INF: FPGA: Recv ZSGSRD 36062
17-03-18 02:23:59.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:23:59.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:23:59.254 -07 000000462 INF: FPGA: Recv ZSGSRD 36068
17-03-18 02:23:59.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:23:59.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:23:59.264 -07 000000501 INF: FPGA: Recv ZSGSRD 36064
17-03-18 02:23:59.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:23:59.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:23:59.274 -07 000000455 INF: FPGA: Recv ZSGSRD 36060
17-03-18 02:23:59.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:23:59.284 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:23:59.284 -07 000000569 INF: FPGA: Recv ZPIEZORD 31991
17-03-18 02:23:59.294 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:23:59.294 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.733 V. Piezo Error = -9.0 V.
17-03-18 02:23:59.294 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36060 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36060 (-171.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36053 (-171.1 uncal um), Max = 36068 (-171.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:23:59.294 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36060, posNoise = 8, negNoise = 7
17-03-18 02:23:59.294 -07 000000610 INF: Z Motor: After move to -0.171975, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:23:59.294 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:23:59.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:23:59.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:23:59.294 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:23:59.294 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:23:59.294 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:23:59.294 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:23:59.294 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:23:59.294 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:23:59.294 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:23:59.294 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 02:23:59.294 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:23:59.294 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:23:59.294 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:23:59.294 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:23:59.314 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:23:59.314 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:23:59.314 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 02:23:59.314 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:23:59.324 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:23:59.324 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:23:59.334 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 02:23:59.334 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 41 ms.
17-03-18 02:23:59.344 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37744 150\n [Camera]
17-03-18 02:23:59.534 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:23:59.934 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:23:59.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:23:59.934 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:23:59.934 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:23:59.934 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 02:23:59.934 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:23:59.934 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:23:59.934 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:00.064 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:00.064 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 02:24:00.124 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37744 780
17-03-18 02:24:00.274 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:24:00.334 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:24:00.334 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:24:00.334 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:00.334 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:24:00.334 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:24:00.454 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 02:24:00.454 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:24:00.454 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:00.454 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:24:00.464 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 524 ms.
17-03-18 02:24:00.464 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:24:00.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:24:00.464 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:00.474 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:24:00.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:24:00.474 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:00.474 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:24:00.474 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:00.474 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:00.474 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:24:00.654 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:24:00.654 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:24:00.664 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37744 150' command took 2 ms to send, 1309 ms to get response, and 1319 ms overall
17-03-18 02:24:00.664 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.171946
17-03-18 02:24:00.664 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17195 mm
17-03-18 02:24:00.664 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:24:00.664 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 37562, sync = True, waitForSettling = False)
17-03-18 02:24:00.664 -07 000000430 INF: Z Motor: Moving to -0.171948 mm, started at -0.171980 mm, distance = 0.03 um
17-03-18 02:24:00.664 -07 000000430 INF: FPGA: Xmit ZDACW 37562\n [Z Motor]
17-03-18 02:24:00.664 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 02:24:00.664 -07 000000626 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 02:24:00.664 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:24:00.674 -07 000000430 INF: FPGA: 'ZDACW 37562' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:24:00.674 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:00.674 -07 000000462 INF: FPGA: Recv YRDPOS 122696
17-03-18 02:24:00.684 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:24:00.684 -07 000000626 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:00.684 -07 000000626 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:24:00.684 -07 000000626 INF: Y Motor: Moving 1332 steps2
17-03-18 02:24:00.684 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:00.684 -07 000000618 INF: FPGA: Recv ZDACR 37562
17-03-18 02:24:00.694 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:24:00.694 -07 000000430 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-18 02:24:00.694 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:24:00.874 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:24:00.874 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:24:00.874 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:00.874 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:24:00.874 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:24:00.874 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:00.874 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:24:00.874 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:24:00.874 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:24:00.884 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:24:01.064 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 02:24:01.064 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:24:01.114 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:01.114 -07 000000462 INF: FPGA: Recv YRDPOS 124380
17-03-18 02:24:01.124 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:24:01.124 -07 000000626 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:01.124 -07 000000626 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 02:24:01.124 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.832 mm, average velocity = 2.145 mm/sec
17-03-18 02:24:01.474 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:24:01.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:24:01.844 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 3.994908,
17-03-18 02:24:02.074 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:02.074 -07 000000579 INF: FPGA: Recv YRDPOS 124380
17-03-18 02:24:02.084 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:24:02.084 -07 000000626 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:02.104 -07 000000626 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:24:02.104 -07 000000626 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:24:02.104 -07 000000626 INF: Y Motor: Moved to 60.7324 after 1443 ms (table move)
17-03-18 02:24:02.114 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171948 mm (DAC = 37562)
17-03-18 02:24:02.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:02.114 -07 000000501 INF: FPGA: Recv ZSGSRD 36054
17-03-18 02:24:02.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:24:02.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:02.124 -07 000000561 INF: FPGA: Recv ZSGSRD 36059
17-03-18 02:24:02.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:02.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:02.134 -07 000000629 INF: FPGA: Recv ZSGSRD 36061
17-03-18 02:24:02.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:02.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:02.144 -07 000000430 INF: FPGA: Recv ZSGSRD 36053
17-03-18 02:24:02.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:02.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:02.154 -07 000000591 INF: FPGA: Recv ZSGSRD 36055
17-03-18 02:24:02.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:02.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:02.164 -07 000000618 INF: FPGA: Recv ZSGSRD 36058
17-03-18 02:24:02.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:02.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:02.174 -07 000000626 INF: FPGA: Recv ZSGSRD 36054
17-03-18 02:24:02.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:02.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:02.184 -07 000000576 INF: FPGA: Recv ZSGSRD 36052
17-03-18 02:24:02.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:02.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:02.194 -07 000000569 INF: FPGA: Recv ZSGSRD 36054
17-03-18 02:24:02.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:02.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:02.204 -07 000000591 INF: FPGA: Recv ZSGSRD 36066
17-03-18 02:24:02.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:02.214 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:02.214 -07 000000618 INF: FPGA: Recv ZPIEZORD 32023
17-03-18 02:24:02.224 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:02.224 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.732 V. Piezo Error = -8.9 V.
17-03-18 02:24:02.224 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.9 um, Read 10 ADC samples: Avg = 36057 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36054 (-171.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36052 (-171.0 uncal um), Max = 36066 (-171.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:24:02.224 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36057, posNoise = 9, negNoise = 5
17-03-18 02:24:02.224 -07 000000610 INF: Z Motor: After move to -0.171948, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:02.224 -07 000000610 INF: Z Motor: Settle wait time = 1446 ms, measure time = 109 ms (allowed 150 ms), total time = 1555 ms
17-03-18 02:24:02.224 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:24:02.274 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 02:24:02.274 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:24:02.274 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.17196116920661. ----------
17-03-18 02:24:02.274 -07 000000610 INF: Cycle	99	Tile	2	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:24:02.274 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37385, sync = True, waitForSettling = True)
17-03-18 02:24:02.274 -07 000000610 INF: Z Motor: Moving to -0.171138 mm, started at -0.171961 mm, distance = 0.82 um
17-03-18 02:24:02.274 -07 000000610 INF: FPGA: Xmit ZDACW 37385\n [Z Motor]
17-03-18 02:24:02.274 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:24:02.284 -07 000000610 INF: FPGA: 'ZDACW 37385' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:24:02.284 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:02.284 -07 000000579 INF: FPGA: Recv ZDACR 37385
17-03-18 02:24:02.294 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:02.294 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:24:02.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:02.444 -07 000000626 INF: FPGA: Recv ZSGSRD 35934
17-03-18 02:24:02.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:24:02.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:02.454 -07 000000512 INF: FPGA: Recv ZSGSRD 35935
17-03-18 02:24:02.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:02.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:02.464 -07 000000569 INF: FPGA: Recv ZSGSRD 35932
17-03-18 02:24:02.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:02.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:02.474 -07 000000591 INF: FPGA: Recv ZSGSRD 35931
17-03-18 02:24:02.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:02.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:02.484 -07 000000579 INF: FPGA: Recv ZSGSRD 35930
17-03-18 02:24:02.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:02.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:02.494 -07 000000462 INF: FPGA: Recv ZSGSRD 35927
17-03-18 02:24:02.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:02.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:02.504 -07 000000576 INF: FPGA: Recv ZSGSRD 35926
17-03-18 02:24:02.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:02.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:02.514 -07 000000461 INF: FPGA: Recv ZSGSRD 35930
17-03-18 02:24:02.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:24:02.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:02.524 -07 000000430 INF: FPGA: Recv ZSGSRD 35934
17-03-18 02:24:02.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:02.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:02.534 -07 000000455 INF: FPGA: Recv ZSGSRD 35934
17-03-18 02:24:02.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:02.544 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:02.544 -07 000000569 INF: FPGA: Recv ZPIEZORD 31843
17-03-18 02:24:02.554 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:02.554 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.705 V. Piezo Error = -9.0 V.
17-03-18 02:24:02.554 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35931 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35932 (-170.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35926 (-170.2 uncal um), Max = 35935 (-170.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:24:02.554 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35931, posNoise = 4, negNoise = 5
17-03-18 02:24:02.554 -07 000000610 INF: Z Motor: After move to -0.171138, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:02.554 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 02:24:02.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:24:02.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:24:02.554 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:24:02.554 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:24:02.554 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:24:02.554 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:24:02.554 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:24:02.554 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:24:02.554 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:24:02.554 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:24:02.554 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:24:02.554 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:24:02.564 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:24:02.564 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:24:02.564 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:24:02.564 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:24:02.574 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 02:24:02.574 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:24:02.574 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:24:02.574 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:24:02.584 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37562 150\n [Camera]
17-03-18 02:24:02.784 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:24:03.174 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:24:03.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:24:03.174 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:03.174 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:03.174 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 02:24:03.174 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:24:03.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:24:03.174 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:03.294 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:03.294 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 02:24:03.364 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37562 780
17-03-18 02:24:03.514 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:24:03.574 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:24:03.574 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:24:03.574 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:03.574 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:24:03.574 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:24:03.694 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 02:24:03.694 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:24:03.694 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:03.694 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:24:03.704 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 520 ms.
17-03-18 02:24:03.704 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:24:03.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:24:03.704 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:03.714 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:24:03.714 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:24:03.714 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:03.714 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:03.714 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:24:03.714 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:03.714 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:24:03.894 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:24:03.904 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:24:03.904 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37562 150' command took 2 ms to send, 1310 ms to get response, and 1320 ms overall
17-03-18 02:24:03.904 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.171848
17-03-18 02:24:03.904 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17185 mm
17-03-18 02:24:03.904 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:24:03.904 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 02:24:03.904 -07 000000591 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 02:24:03.904 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 37540, sync = True, waitForSettling = False)
17-03-18 02:24:03.904 -07 000000424 INF: Z Motor: Moving to -0.171847 mm, started at -0.171152 mm, distance = -0.70 um
17-03-18 02:24:03.904 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:03.904 -07 000000606 INF: FPGA: Recv YRDPOS 124381
17-03-18 02:24:03.914 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:24:03.914 -07 000000591 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:03.914 -07 000000424 INF: FPGA: Xmit ZDACW 37540\n [Z Motor]
17-03-18 02:24:03.914 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:24:03.914 -07 000000591 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:24:03.914 -07 000000591 INF: Y Motor: Moving 1344 steps-21
17-03-18 02:24:03.924 -07 000000424 INF: FPGA: 'ZDACW 37540' command took 2 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:24:03.924 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:03.924 -07 000000444 INF: FPGA: Recv ZDACR 37540
17-03-18 02:24:03.934 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:24:03.934 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:03.934 -07 000000424 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-18 02:24:04.094 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 02:24:04.094 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:24:04.094 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:04.104 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:24:04.104 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:24:04.104 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 02:24:04.104 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:24:04.104 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:04.114 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:24:04.114 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:24:04.304 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 02:24:04.304 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 02:24:04.354 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:04.354 -07 000000579 INF: FPGA: Recv YRDPOS 126081
17-03-18 02:24:04.364 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:24:04.364 -07 000000591 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:04.364 -07 000000591 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 02:24:04.364 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.840 mm, average velocity = 2.143 mm/sec
17-03-18 02:24:05.314 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:05.314 -07 000000462 INF: FPGA: Recv YRDPOS 126081
17-03-18 02:24:05.324 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:24:05.324 -07 000000591 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:05.344 -07 000000591 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:24:05.344 -07 000000591 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:24:05.344 -07 000000591 INF: Y Motor: Moved to 61.5630 after 1443 ms (table move)
17-03-18 02:24:05.354 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171847 mm (DAC = 37540)
17-03-18 02:24:05.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:05.354 -07 000000501 INF: FPGA: Recv ZSGSRD 36046
17-03-18 02:24:05.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:24:05.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:05.364 -07 000000591 INF: FPGA: Recv ZSGSRD 36044
17-03-18 02:24:05.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:05.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:05.374 -07 000000569 INF: FPGA: Recv ZSGSRD 36041
17-03-18 02:24:05.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:05.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:05.384 -07 000000512 INF: FPGA: Recv ZSGSRD 36041
17-03-18 02:24:05.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:05.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:05.394 -07 000000430 INF: FPGA: Recv ZSGSRD 36045
17-03-18 02:24:05.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:05.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:05.404 -07 000000444 INF: FPGA: Recv ZSGSRD 36040
17-03-18 02:24:05.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:05.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:05.414 -07 000000561 INF: FPGA: Recv ZSGSRD 36040
17-03-18 02:24:05.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:05.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:05.424 -07 000000629 INF: FPGA: Recv ZSGSRD 36033
17-03-18 02:24:05.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:05.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:05.434 -07 000000626 INF: FPGA: Recv ZSGSRD 36039
17-03-18 02:24:05.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:05.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:05.444 -07 000000502 INF: FPGA: Recv ZSGSRD 36045
17-03-18 02:24:05.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:05.454 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:05.454 -07 000000444 INF: FPGA: Recv ZPIEZORD 31998
17-03-18 02:24:05.464 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:05.464 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.728 V. Piezo Error = -8.9 V.
17-03-18 02:24:05.464 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36041 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36041 (-171.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36033 (-170.9 uncal um), Max = 36046 (-171.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:24:05.464 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36041, posNoise = 5, negNoise = 8
17-03-18 02:24:05.464 -07 000000610 INF: Z Motor: After move to -0.171847, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:05.464 -07 000000610 INF: Z Motor: Settle wait time = 1446 ms, measure time = 109 ms (allowed 150 ms), total time = 1555 ms
17-03-18 02:24:05.464 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:24:05.514 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 02:24:05.514 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:24:05.514 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.171858381812342. ----------
17-03-18 02:24:05.514 -07 000000610 INF: Cycle	99	Tile	3	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:24:05.514 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37363, sync = True, waitForSettling = True)
17-03-18 02:24:05.514 -07 000000610 INF: Z Motor: Moving to -0.171037 mm, started at -0.171858 mm, distance = 0.82 um
17-03-18 02:24:05.514 -07 000000610 INF: FPGA: Xmit ZDACW 37363\n [Z Motor]
17-03-18 02:24:05.514 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:24:05.524 -07 000000610 INF: FPGA: 'ZDACW 37363' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:24:05.524 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:05.524 -07 000000462 INF: FPGA: Recv ZDACR 37363
17-03-18 02:24:05.534 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:05.534 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:24:05.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:05.684 -07 000000606 INF: FPGA: Recv ZSGSRD 35915
17-03-18 02:24:05.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:24:05.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:05.694 -07 000000626 INF: FPGA: Recv ZSGSRD 35922
17-03-18 02:24:05.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:05.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:05.704 -07 000000455 INF: FPGA: Recv ZSGSRD 35915
17-03-18 02:24:05.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:05.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:05.714 -07 000000501 INF: FPGA: Recv ZSGSRD 35918
17-03-18 02:24:05.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:05.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:05.724 -07 000000579 INF: FPGA: Recv ZSGSRD 35921
17-03-18 02:24:05.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:24:05.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:05.734 -07 000000424 INF: FPGA: Recv ZSGSRD 35913
17-03-18 02:24:05.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:05.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:05.744 -07 000000461 INF: FPGA: Recv ZSGSRD 35910
17-03-18 02:24:05.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:05.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:05.754 -07 000000467 INF: FPGA: Recv ZSGSRD 35911
17-03-18 02:24:05.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:05.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:05.764 -07 000000629 INF: FPGA: Recv ZSGSRD 35920
17-03-18 02:24:05.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:05.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:05.774 -07 000000462 INF: FPGA: Recv ZSGSRD 35918
17-03-18 02:24:05.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:05.784 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:05.784 -07 000000606 INF: FPGA: Recv ZPIEZORD 31837
17-03-18 02:24:05.794 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:05.794 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.701 V. Piezo Error = -9.0 V.
17-03-18 02:24:05.794 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35916 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35916 (-170.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35910 (-170.1 uncal um), Max = 35922 (-170.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:24:05.794 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35916, posNoise = 6, negNoise = 6
17-03-18 02:24:05.794 -07 000000610 INF: Z Motor: After move to -0.171037, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:05.794 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:24:05.794 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:24:05.794 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:24:05.794 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:24:05.794 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:24:05.794 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:24:05.794 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:24:05.794 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:24:05.794 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:24:05.794 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:24:05.794 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:24:05.794 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:24:05.794 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:24:05.804 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:24:05.804 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:24:05.804 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:24:05.804 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:24:05.814 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:24:05.814 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:24:05.814 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 02:24:05.814 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 02:24:05.824 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37540 150\n [Camera]
17-03-18 02:24:06.014 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:24:06.414 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:24:06.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:24:06.414 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:06.414 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:06.414 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1145266312, 0x0, 391868352) start.
17-03-18 02:24:06.414 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:24:06.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:24:06.414 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:06.414 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:06.414 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 02:24:06.474 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:24:06.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:24:06.604 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37540 780
17-03-18 02:24:06.754 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:24:06.794 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1145266312, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:24:06.794 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:24:06.794 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:06.794 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:24:06.794 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:24:06.794 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:06.794 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:24:06.794 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:24:06.804 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:24:06.804 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:24:06.944 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:24:06.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:24:06.944 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:06.944 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:06.944 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:24:06.954 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:24:06.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:24:06.954 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:06.954 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:06.954 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:24:07.134 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:24:07.144 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:24:07.144 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37540 150' command took 2 ms to send, 1310 ms to get response, and 1319 ms overall
17-03-18 02:24:07.144 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:24:07.144 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.171055355294621. ------
17-03-18 02:24:07.144 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:24:07.144 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17733 mm
17-03-18 02:24:07.144 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:24:07.144 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:24:07.144 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 02:24:07.144 -07 000000461 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 02:24:07.144 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38739, sync = True, waitForSettling = False)
17-03-18 02:24:07.144 -07 000000462 INF: Z Motor: Moving to -0.177336 mm, started at -0.171055 mm, distance = -6.28 um
17-03-18 02:24:07.154 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:24:07.154 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:07.154 -07 000000561 INF: FPGA: Recv YRDPOS 126081
17-03-18 02:24:07.164 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:24:07.164 -07 000000461 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:07.164 -07 000000461 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:24:07.164 -07 000000461 INF: Y Motor: Moving 1343 steps-20
17-03-18 02:24:07.164 -07 000000462 INF: FPGA: Xmit ZDACW 38739\n [Z Motor]
17-03-18 02:24:07.164 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:24:07.174 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:24:07.174 -07 000000462 INF: FPGA: 'ZDACW 38739' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 02:24:07.184 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:24:07.194 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:07.194 -07 000000502 INF: FPGA: Recv ZDACR 38739
17-03-18 02:24:07.204 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:24:07.204 -07 000000462 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 02:24:07.214 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 3.989471,
17-03-18 02:24:07.334 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 02:24:07.334 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:24:07.334 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:07.334 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 02:24:07.334 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 02:24:07.334 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:07.334 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:24:07.334 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:24:07.344 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:24:07.344 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:24:07.374 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:24:07.374 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 02:24:07.554 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 02:24:07.554 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:24:07.604 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:07.604 -07 000000590 INF: FPGA: Recv YRDPOS 127785
17-03-18 02:24:07.614 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:24:07.614 -07 000000461 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:07.614 -07 000000461 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 02:24:07.614 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.110 mm/sec
17-03-18 02:24:08.564 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:08.564 -07 000000629 INF: FPGA: Recv YRDPOS 127785
17-03-18 02:24:08.574 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:24:08.574 -07 000000461 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:08.594 -07 000000461 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:24:08.594 -07 000000461 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:24:08.594 -07 000000461 INF: Y Motor: Moved to 62.3950 after 1447 ms (table move)
17-03-18 02:24:08.604 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177336 mm (DAC = 38739)
17-03-18 02:24:08.604 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:08.604 -07 000000576 INF: FPGA: Recv ZSGSRD 36899
17-03-18 02:24:08.614 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:08.614 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:08.614 -07 000000430 INF: FPGA: Recv ZSGSRD 36900
17-03-18 02:24:08.624 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:08.624 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:08.624 -07 000000561 INF: FPGA: Recv ZSGSRD 36898
17-03-18 02:24:08.634 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:08.634 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:08.634 -07 000000606 INF: FPGA: Recv ZSGSRD 36898
17-03-18 02:24:08.644 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:08.644 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:08.644 -07 000000424 INF: FPGA: Recv ZSGSRD 36892
17-03-18 02:24:08.654 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:08.654 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:08.654 -07 000000512 INF: FPGA: Recv ZSGSRD 36893
17-03-18 02:24:08.664 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:08.664 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:08.664 -07 000000502 INF: FPGA: Recv ZSGSRD 36892
17-03-18 02:24:08.674 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:08.674 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:08.674 -07 000000461 INF: FPGA: Recv ZSGSRD 36891
17-03-18 02:24:08.684 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:08.684 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:08.684 -07 000000606 INF: FPGA: Recv ZSGSRD 36896
17-03-18 02:24:08.694 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:08.694 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:08.694 -07 000000424 INF: FPGA: Recv ZSGSRD 36904
17-03-18 02:24:08.704 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:08.704 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:08.704 -07 000000444 INF: FPGA: Recv ZPIEZORD 33140
17-03-18 02:24:08.714 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:08.714 -07 000000591 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.911 V. Piezo Error = -8.3 V.
17-03-18 02:24:08.714 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36896 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36897 (-176.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36891 (-176.4 uncal um), Max = 36904 (-176.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:24:08.714 -07 000000591 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36896, posNoise = 8, negNoise = 5
17-03-18 02:24:08.714 -07 000000591 INF: Z Motor: After move to -0.177336, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:08.714 -07 000000591 INF: Z Motor: Settle wait time = 1450 ms, measure time = 112 ms (allowed 150 ms), total time = 1562 ms
17-03-18 02:24:08.714 -07 000000591 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-18 02:24:08.754 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-18 02:24:08.754 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:24:08.754 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:24:08.754 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:24:08.754 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:24:08.754 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:24:08.754 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:24:08.754 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:24:08.754 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:24:08.754 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:24:08.764 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:24:08.764 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:24:08.774 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 02:24:08.774 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:24:08.774 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:24:08.824 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:24:09.124 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:24:09.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:24:09.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:24:09.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111624864, 0x0, 559484976) start.
17-03-18 02:24:09.154 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:24:09.164 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 02:24:09.164 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:24:09.244 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111624864, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:24:09.244 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:09.254 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:24:09.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:24:09.264 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:24:09.264 -07 000000569 INF: Autofocus start
17-03-18 02:24:09.264 -07 000000569 INF: MeasureProfile start
17-03-18 02:24:09.264 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:24:09.274 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:24:09.274 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:24:09.274 -07 000000569 INF: MeasureProfile done
17-03-18 02:24:09.274 -07 000000569 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:24:09.274 -07 000000569 INF: Autofocus finished
17-03-18 02:24:09.474 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:24:09.474 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:24:09.474 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.177351083193547. ----------
17-03-18 02:24:09.474 -07 000000610 INF: Cycle	99	Tile	4	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:24:09.484 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37271, sync = True, waitForSettling = True)
17-03-18 02:24:09.484 -07 000000610 INF: Z Motor: Moving to -0.170616 mm, started at -0.177351 mm, distance = 6.74 um
17-03-18 02:24:09.484 -07 000000610 INF: FPGA: Xmit ZDACW 37271\n [Z Motor]
17-03-18 02:24:09.484 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:24:09.494 -07 000000610 INF: FPGA: 'ZDACW 37271' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:09.494 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:09.494 -07 000000576 INF: FPGA: Recv ZDACR 37271
17-03-18 02:24:09.504 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:09.504 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:24:09.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:09.654 -07 000000579 INF: FPGA: Recv ZSGSRD 35856
17-03-18 02:24:09.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:09.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:09.664 -07 000000501 INF: FPGA: Recv ZSGSRD 35855
17-03-18 02:24:09.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:09.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:09.674 -07 000000430 INF: FPGA: Recv ZSGSRD 35855
17-03-18 02:24:09.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:09.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:09.684 -07 000000579 INF: FPGA: Recv ZSGSRD 35851
17-03-18 02:24:09.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:24:09.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:09.694 -07 000000591 INF: FPGA: Recv ZSGSRD 35847
17-03-18 02:24:09.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:09.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:09.704 -07 000000461 INF: FPGA: Recv ZSGSRD 35848
17-03-18 02:24:09.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:09.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:09.714 -07 000000626 INF: FPGA: Recv ZSGSRD 35851
17-03-18 02:24:09.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:09.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:09.724 -07 000000512 INF: FPGA: Recv ZSGSRD 35853
17-03-18 02:24:09.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:09.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:09.734 -07 000000444 INF: FPGA: Recv ZSGSRD 35849
17-03-18 02:24:09.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:09.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:09.744 -07 000000591 INF: FPGA: Recv ZSGSRD 35845
17-03-18 02:24:09.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:09.754 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:09.754 -07 000000430 INF: FPGA: Recv ZPIEZORD 31718
17-03-18 02:24:09.764 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:09.764 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.687 V. Piezo Error = -9.1 V.
17-03-18 02:24:09.764 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35851 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35851 (-169.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35845 (-169.7 uncal um), Max = 35856 (-169.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:24:09.764 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35851, posNoise = 5, negNoise = 6
17-03-18 02:24:09.764 -07 000000610 INF: Z Motor: After move to -0.170616, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:09.764 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:24:09.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:24:09.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:24:09.764 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:24:09.764 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:24:09.764 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:24:09.764 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:24:09.764 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:24:09.764 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:24:09.764 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:24:09.764 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:24:09.764 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:24:09.764 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:24:09.764 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:24:09.764 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:24:09.764 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:24:09.764 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:24:09.774 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:24:09.774 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 02:24:09.774 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:24:09.774 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:24:09.784 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37448 150\n [Camera]
17-03-18 02:24:09.984 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:24:10.374 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:24:10.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:24:10.374 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:10.374 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:10.374 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:24:10.384 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:24:10.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:24:10.384 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:10.384 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:10.384 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:24:10.564 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37448 780
17-03-18 02:24:10.714 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:24:10.754 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:24:10.754 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:24:10.754 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:10.754 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 02:24:10.754 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 02:24:10.754 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:10.764 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:24:10.764 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:24:10.764 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:24:10.764 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:24:10.914 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:24:10.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:24:10.914 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:11.034 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:24:11.034 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:24:11.034 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:11.034 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:11.034 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:24:11.044 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:11.044 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 02:24:11.104 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:24:11.104 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:24:11.104 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37448 150' command took 2 ms to send, 1312 ms to get response, and 1320 ms overall
17-03-18 02:24:11.104 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.171155
17-03-18 02:24:11.104 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17115 mm
17-03-18 02:24:11.104 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:24:11.104 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 37389, sync = True, waitForSettling = False)
17-03-18 02:24:11.104 -07 000000569 INF: Z Motor: Moving to -0.171156 mm, started at -0.170638 mm, distance = -0.52 um
17-03-18 02:24:11.104 -07 000000569 INF: FPGA: Xmit ZDACW 37389\n [Z Motor]
17-03-18 02:24:11.104 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 02:24:11.104 -07 000000430 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 02:24:11.114 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:11.114 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:24:11.114 -07 000000569 INF: FPGA: 'ZDACW 37389' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 02:24:11.114 -07 000000629 INF: FPGA: Recv YRDPOS 127785
17-03-18 02:24:11.124 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:24:11.124 -07 000000430 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:11.124 -07 000000430 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:24:11.124 -07 000000430 INF: Y Motor: Moving 1340 steps-16
17-03-18 02:24:11.124 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:11.124 -07 000000501 INF: FPGA: Recv ZDACR 37389
17-03-18 02:24:11.134 -07 000000569 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:24:11.134 -07 000000569 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-18 02:24:11.134 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:24:11.414 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:24:11.414 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:24:11.414 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:11.414 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:24:11.424 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:24:11.424 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:24:11.424 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:24:11.424 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:11.424 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:24:11.424 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-18 02:24:11.474 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:24:11.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:24:11.504 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 02:24:11.504 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:24:11.554 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:11.554 -07 000000512 INF: FPGA: Recv YRDPOS 129481
17-03-18 02:24:11.564 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:24:11.564 -07 000000430 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:11.564 -07 000000430 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:24:11.564 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.159 mm/sec
17-03-18 02:24:12.514 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:12.514 -07 000000569 INF: FPGA: Recv YRDPOS 129482
17-03-18 02:24:12.524 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:24:12.524 -07 000000430 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:12.544 -07 000000430 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:24:12.544 -07 000000430 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:24:12.544 -07 000000430 INF: Y Motor: Moved to 63.2236 after 1439 ms (table move)
17-03-18 02:24:12.554 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171156 mm (DAC = 37389)
17-03-18 02:24:12.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:12.554 -07 000000444 INF: FPGA: Recv ZSGSRD 35935
17-03-18 02:24:12.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:12.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:12.574 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 4.008536,
17-03-18 02:24:12.574 -07 000000501 INF: FPGA: Recv ZSGSRD 35933
17-03-18 02:24:12.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:24:12.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:12.604 -07 000000444 INF: FPGA: Recv ZSGSRD 35932
17-03-18 02:24:12.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:24:12.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:12.634 -07 000000512 INF: FPGA: Recv ZSGSRD 35933
17-03-18 02:24:12.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:24:12.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:12.644 -07 000000461 INF: FPGA: Recv ZSGSRD 35933
17-03-18 02:24:12.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:12.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:12.654 -07 000000579 INF: FPGA: Recv ZSGSRD 35931
17-03-18 02:24:12.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:12.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:12.664 -07 000000606 INF: FPGA: Recv ZSGSRD 35939
17-03-18 02:24:12.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:12.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:12.674 -07 000000430 INF: FPGA: Recv ZSGSRD 35938
17-03-18 02:24:12.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:12.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:12.684 -07 000000590 INF: FPGA: Recv ZSGSRD 35929
17-03-18 02:24:12.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:12.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:12.694 -07 000000461 INF: FPGA: Recv ZSGSRD 35932
17-03-18 02:24:12.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:12.704 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:12.704 -07 000000462 INF: FPGA: Recv ZPIEZORD 31831
17-03-18 02:24:12.714 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:12.714 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.705 V. Piezo Error = -9.1 V.
17-03-18 02:24:12.714 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35934 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35933 (-170.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35929 (-170.3 uncal um), Max = 35939 (-170.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:24:12.714 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35934, posNoise = 5, negNoise = 5
17-03-18 02:24:12.714 -07 000000610 INF: Z Motor: After move to -0.171156, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:12.714 -07 000000610 INF: Z Motor: Settle wait time = 1442 ms, measure time = 160 ms (allowed 150 ms), total time = 1602 ms
17-03-18 02:24:12.714 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 160 ms, longer than max expected time of 150 ms
17-03-18 02:24:12.714 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-18 02:24:12.714 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:24:12.714 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.171170991113173. ----------
17-03-18 02:24:12.714 -07 000000610 INF: Cycle	99	Tile	5	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:24:12.714 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37212, sync = True, waitForSettling = True)
17-03-18 02:24:12.714 -07 000000610 INF: Z Motor: Moving to -0.170346 mm, started at -0.171171 mm, distance = 0.83 um
17-03-18 02:24:12.714 -07 000000610 INF: FPGA: Xmit ZDACW 37212\n [Z Motor]
17-03-18 02:24:12.714 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:24:12.724 -07 000000610 INF: FPGA: 'ZDACW 37212' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:24:12.724 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:12.724 -07 000000626 INF: FPGA: Recv ZDACR 37212
17-03-18 02:24:12.734 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:12.734 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:24:12.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:12.884 -07 000000606 INF: FPGA: Recv ZSGSRD 35809
17-03-18 02:24:12.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:24:12.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:12.894 -07 000000430 INF: FPGA: Recv ZSGSRD 35806
17-03-18 02:24:12.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:12.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:12.904 -07 000000462 INF: FPGA: Recv ZSGSRD 35807
17-03-18 02:24:12.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:12.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:12.914 -07 000000424 INF: FPGA: Recv ZSGSRD 35805
17-03-18 02:24:12.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:12.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:12.924 -07 000000430 INF: FPGA: Recv ZSGSRD 35810
17-03-18 02:24:12.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:12.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:12.934 -07 000000455 INF: FPGA: Recv ZSGSRD 35799
17-03-18 02:24:12.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:12.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:12.944 -07 000000590 INF: FPGA: Recv ZSGSRD 35811
17-03-18 02:24:12.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:12.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:12.954 -07 000000502 INF: FPGA: Recv ZSGSRD 35810
17-03-18 02:24:12.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:12.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:12.964 -07 000000606 INF: FPGA: Recv ZSGSRD 35809
17-03-18 02:24:12.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:12.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:12.974 -07 000000576 INF: FPGA: Recv ZSGSRD 35809
17-03-18 02:24:12.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:12.984 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:12.984 -07 000000579 INF: FPGA: Recv ZPIEZORD 31666
17-03-18 02:24:12.994 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:12.994 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.678 V. Piezo Error = -9.1 V.
17-03-18 02:24:12.994 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35808 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35809 (-169.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35799 (-169.4 uncal um), Max = 35811 (-169.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:24:12.994 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35808, posNoise = 3, negNoise = 9
17-03-18 02:24:12.994 -07 000000610 INF: Z Motor: After move to -0.170346, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:12.994 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 02:24:12.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:24:12.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:24:12.994 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:24:12.994 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:24:12.994 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:24:12.994 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:24:12.994 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:24:12.994 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:24:12.994 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:24:12.994 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:24:12.994 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:24:12.994 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:24:12.994 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:24:12.994 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:24:13.004 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:24:13.004 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:24:13.014 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:24:13.014 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:24:13.014 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:24:13.014 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:24:13.014 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37389 150\n [Camera]
17-03-18 02:24:13.214 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:24:13.614 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:24:13.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:24:13.614 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:13.614 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:13.614 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1145266312, 0x0, 391868352) start.
17-03-18 02:24:13.614 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:24:13.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:24:13.614 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:13.614 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:13.614 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:24:13.804 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37389 780
17-03-18 02:24:13.954 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:24:13.984 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 02:24:13.984 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 02:24:13.994 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:13.994 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1145266312, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:24:13.994 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:24:13.994 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:13.994 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:24:13.994 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:24:13.994 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:24:14.004 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:24:14.144 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:24:14.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:24:14.144 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:14.264 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:24:14.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:24:14.264 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:14.264 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:14.264 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:24:14.264 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:14.264 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 02:24:14.334 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:24:14.334 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:24:14.334 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37389 150' command took 2 ms to send, 1307 ms to get response, and 1319 ms overall
17-03-18 02:24:14.344 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.170472
17-03-18 02:24:14.344 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17047 mm
17-03-18 02:24:14.344 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:24:14.344 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 02:24:14.354 -07 000000561 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-18 02:24:14.354 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:14.354 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 37240, sync = True, waitForSettling = False)
17-03-18 02:24:14.354 -07 000000455 INF: Z Motor: Moving to -0.170474 mm, started at -0.170362 mm, distance = -0.11 um
17-03-18 02:24:14.354 -07 000000629 INF: FPGA: Recv YRDPOS 129482
17-03-18 02:24:14.364 -07 000000455 INF: FPGA: Xmit ZDACW 37240\n [Z Motor]
17-03-18 02:24:14.364 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:14.364 -07 000000561 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:14.364 -07 000000561 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:24:14.364 -07 000000561 INF: Y Motor: Moving 1342 steps-19
17-03-18 02:24:14.364 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:24:14.374 -07 000000455 INF: FPGA: 'ZDACW 37240' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:24:14.374 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:24:14.384 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:14.384 -07 000000461 INF: FPGA: Recv ZDACR 37240
17-03-18 02:24:14.394 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:24:14.394 -07 000000455 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 02:24:14.644 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 02:24:14.644 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:24:14.644 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:14.654 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 02:24:14.654 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 02:24:14.654 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:14.654 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:24:14.654 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 507 ms.
17-03-18 02:24:14.654 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:24:14.664 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:24:14.744 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 02:24:14.744 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:24:14.794 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:14.794 -07 000000444 INF: FPGA: Recv YRDPOS 131187
17-03-18 02:24:14.804 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:24:14.804 -07 000000561 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:14.804 -07 000000561 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 02:24:14.804 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.168 mm/sec
17-03-18 02:24:15.754 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:15.754 -07 000000579 INF: FPGA: Recv YRDPOS 131188
17-03-18 02:24:15.764 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:24:15.764 -07 000000561 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:15.784 -07 000000561 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:24:15.784 -07 000000561 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:24:15.784 -07 000000561 INF: Y Motor: Moved to 64.0566 after 1435 ms (table move)
17-03-18 02:24:15.784 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170474 mm (DAC = 37240)
17-03-18 02:24:15.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:15.794 -07 000000444 INF: FPGA: Recv ZSGSRD 35829
17-03-18 02:24:15.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-18 02:24:15.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:15.794 -07 000000579 INF: FPGA: Recv ZSGSRD 35829
17-03-18 02:24:15.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:24:15.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:15.804 -07 000000424 INF: FPGA: Recv ZSGSRD 35827
17-03-18 02:24:15.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:15.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:15.814 -07 000000626 INF: FPGA: Recv ZSGSRD 35831
17-03-18 02:24:15.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:15.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:15.824 -07 000000590 INF: FPGA: Recv ZSGSRD 35831
17-03-18 02:24:15.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:15.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:15.834 -07 000000591 INF: FPGA: Recv ZSGSRD 35822
17-03-18 02:24:15.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:15.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:15.844 -07 000000501 INF: FPGA: Recv ZSGSRD 35826
17-03-18 02:24:15.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:15.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:15.854 -07 000000502 INF: FPGA: Recv ZSGSRD 35823
17-03-18 02:24:15.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:15.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:15.864 -07 000000606 INF: FPGA: Recv ZSGSRD 35827
17-03-18 02:24:15.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:15.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:15.874 -07 000000561 INF: FPGA: Recv ZSGSRD 35836
17-03-18 02:24:15.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:15.884 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:15.884 -07 000000444 INF: FPGA: Recv ZPIEZORD 31690
17-03-18 02:24:15.894 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:15.894 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.682 V. Piezo Error = -9.1 V.
17-03-18 02:24:15.894 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35828 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35828 (-169.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35822 (-169.6 uncal um), Max = 35836 (-169.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:24:15.894 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35828, posNoise = 8, negNoise = 6
17-03-18 02:24:15.894 -07 000000610 INF: Z Motor: After move to -0.170474, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:15.894 -07 000000610 INF: Z Motor: Settle wait time = 1433 ms, measure time = 104 ms (allowed 150 ms), total time = 1537 ms
17-03-18 02:24:15.894 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 02:24:15.944 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-18 02:24:15.944 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:24:15.944 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.170490024626147. ----------
17-03-18 02:24:15.944 -07 000000610 INF: Cycle	99	Tile	6	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:24:15.944 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37063, sync = True, waitForSettling = True)
17-03-18 02:24:15.944 -07 000000610 INF: Z Motor: Moving to -0.169664 mm, started at -0.170490 mm, distance = 0.83 um
17-03-18 02:24:15.944 -07 000000610 INF: FPGA: Xmit ZDACW 37063\n [Z Motor]
17-03-18 02:24:15.944 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:24:15.954 -07 000000610 INF: FPGA: 'ZDACW 37063' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:24:15.954 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:15.954 -07 000000462 INF: FPGA: Recv ZDACR 37063
17-03-18 02:24:15.964 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:24:15.964 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:24:16.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:16.114 -07 000000626 INF: FPGA: Recv ZSGSRD 35703
17-03-18 02:24:16.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:24:16.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:16.124 -07 000000629 INF: FPGA: Recv ZSGSRD 35705
17-03-18 02:24:16.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:16.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:16.134 -07 000000444 INF: FPGA: Recv ZSGSRD 35698
17-03-18 02:24:16.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:16.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:16.144 -07 000000606 INF: FPGA: Recv ZSGSRD 35696
17-03-18 02:24:16.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:16.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:16.154 -07 000000590 INF: FPGA: Recv ZSGSRD 35698
17-03-18 02:24:16.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:16.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:16.164 -07 000000591 INF: FPGA: Recv ZSGSRD 35699
17-03-18 02:24:16.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:16.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:16.174 -07 000000576 INF: FPGA: Recv ZSGSRD 35705
17-03-18 02:24:16.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:16.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:16.184 -07 000000618 INF: FPGA: Recv ZSGSRD 35703
17-03-18 02:24:16.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:16.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:16.194 -07 000000579 INF: FPGA: Recv ZSGSRD 35701
17-03-18 02:24:16.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:16.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:16.204 -07 000000424 INF: FPGA: Recv ZSGSRD 35702
17-03-18 02:24:16.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:16.214 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:16.214 -07 000000569 INF: FPGA: Recv ZPIEZORD 31517
17-03-18 02:24:16.224 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:16.224 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.655 V. Piezo Error = -9.2 V.
17-03-18 02:24:16.224 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35701 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35702 (-168.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35696 (-168.8 uncal um), Max = 35705 (-168.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:24:16.224 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35701, posNoise = 4, negNoise = 5
17-03-18 02:24:16.224 -07 000000610 INF: Z Motor: After move to -0.169664, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:16.224 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 02:24:16.224 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:24:16.224 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:24:16.224 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:24:16.224 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:24:16.224 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:24:16.224 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:24:16.224 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:24:16.224 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:24:16.224 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:24:16.224 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:24:16.224 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:24:16.224 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:24:16.224 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:24:16.224 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:24:16.234 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:24:16.234 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:24:16.244 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 02:24:16.244 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:24:16.244 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 02:24:16.244 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:24:16.244 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37240 150\n [Camera]
17-03-18 02:24:16.444 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:24:16.474 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:24:16.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:24:16.844 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:24:16.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:24:16.844 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:16.844 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:16.844 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1145266312, 0x0, 391868352) start.
17-03-18 02:24:16.844 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:24:16.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:24:16.844 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:16.844 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:16.844 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:24:17.034 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37240 780
17-03-18 02:24:17.184 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:24:17.224 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1145266312, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:24:17.224 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:24:17.224 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:17.234 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 02:24:17.234 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 02:24:17.234 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:17.234 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:24:17.234 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:24:17.234 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:24:17.244 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:24:17.374 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:24:17.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:24:17.374 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:17.374 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:17.374 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 02:24:17.384 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:24:17.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:24:17.384 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:17.384 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:17.384 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 02:24:17.564 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:24:17.564 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:24:17.564 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37240 150' command took 2 ms to send, 1309 ms to get response, and 1320 ms overall
17-03-18 02:24:17.574 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.170016
17-03-18 02:24:17.574 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17002 mm
17-03-18 02:24:17.574 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:24:17.574 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 02:24:17.574 -07 000000444 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-18 02:24:17.574 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:17.574 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 37140, sync = True, waitForSettling = False)
17-03-18 02:24:17.574 -07 000000561 INF: Z Motor: Moving to -0.170016 mm, started at -0.169674 mm, distance = -0.34 um
17-03-18 02:24:17.574 -07 000000606 INF: FPGA: Recv YRDPOS 131188
17-03-18 02:24:17.584 -07 000000444 INF: FPGA: 'YRDPOS' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:24:17.584 -07 000000444 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:17.584 -07 000000444 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:24:17.584 -07 000000444 INF: Y Motor: Moving 1338 steps-13
17-03-18 02:24:17.584 -07 000000561 INF: FPGA: Xmit ZDACW 37140\n [Z Motor]
17-03-18 02:24:17.584 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:24:17.594 -07 000000561 INF: FPGA: 'ZDACW 37140' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:24:17.594 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:24:17.604 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:17.604 -07 000000430 INF: FPGA: Recv ZDACR 37140
17-03-18 02:24:17.614 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:24:17.614 -07 000000561 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 02:24:17.764 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:24:17.764 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:24:17.764 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:17.764 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 02:24:17.764 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 02:24:17.764 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:17.764 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:24:17.764 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:24:17.764 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:24:17.774 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:24:17.954 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 4.005817,
17-03-18 02:24:17.964 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 02:24:17.964 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 388 ms overall
17-03-18 02:24:18.014 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:18.014 -07 000000618 INF: FPGA: Recv YRDPOS 132871
17-03-18 02:24:18.024 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:24:18.024 -07 000000444 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:18.024 -07 000000444 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:24:18.024 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.836 mm, average velocity = 2.155 mm/sec
17-03-18 02:24:18.974 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:18.974 -07 000000569 INF: FPGA: Recv YRDPOS 132871
17-03-18 02:24:18.984 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:18.984 -07 000000444 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:19.004 -07 000000444 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:24:19.004 -07 000000444 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:24:19.004 -07 000000444 INF: Y Motor: Moved to 64.8784 after 1434 ms (table move)
17-03-18 02:24:19.014 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170016 mm (DAC = 37140)
17-03-18 02:24:19.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:19.014 -07 000000561 INF: FPGA: Recv ZSGSRD 35749
17-03-18 02:24:19.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:24:19.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:19.024 -07 000000618 INF: FPGA: Recv ZSGSRD 35757
17-03-18 02:24:19.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:19.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:19.034 -07 000000462 INF: FPGA: Recv ZSGSRD 35760
17-03-18 02:24:19.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:19.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:19.044 -07 000000569 INF: FPGA: Recv ZSGSRD 35755
17-03-18 02:24:19.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:19.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:19.054 -07 000000591 INF: FPGA: Recv ZSGSRD 35752
17-03-18 02:24:19.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:19.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:19.064 -07 000000629 INF: FPGA: Recv ZSGSRD 35756
17-03-18 02:24:19.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:19.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:19.074 -07 000000590 INF: FPGA: Recv ZSGSRD 35756
17-03-18 02:24:19.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:19.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:19.084 -07 000000502 INF: FPGA: Recv ZSGSRD 35754
17-03-18 02:24:19.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:19.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:19.094 -07 000000576 INF: FPGA: Recv ZSGSRD 35750
17-03-18 02:24:19.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:19.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:19.104 -07 000000626 INF: FPGA: Recv ZSGSRD 35758
17-03-18 02:24:19.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:19.114 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:19.114 -07 000000501 INF: FPGA: Recv ZPIEZORD 31639
17-03-18 02:24:19.124 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:19.124 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.667 V. Piezo Error = -9.1 V.
17-03-18 02:24:19.124 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35755 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35756 (-169.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35749 (-169.1 uncal um), Max = 35760 (-169.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:24:19.124 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35755, posNoise = 5, negNoise = 6
17-03-18 02:24:19.124 -07 000000610 INF: Z Motor: After move to -0.170016, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:19.124 -07 000000610 INF: Z Motor: Settle wait time = 1434 ms, measure time = 109 ms (allowed 150 ms), total time = 1543 ms
17-03-18 02:24:19.124 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:24:19.174 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-18 02:24:19.174 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:24:19.174 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.170021057139798. ----------
17-03-18 02:24:19.174 -07 000000610 INF: Cycle	99	Tile	7	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:24:19.174 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36963, sync = True, waitForSettling = True)
17-03-18 02:24:19.174 -07 000000610 INF: Z Motor: Moving to -0.169206 mm, started at -0.170021 mm, distance = 0.82 um
17-03-18 02:24:19.174 -07 000000610 INF: FPGA: Xmit ZDACW 36963\n [Z Motor]
17-03-18 02:24:19.174 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 02:24:19.184 -07 000000610 INF: FPGA: 'ZDACW 36963' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:24:19.184 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:19.184 -07 000000444 INF: FPGA: Recv ZDACR 36963
17-03-18 02:24:19.194 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:19.194 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:24:19.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:19.344 -07 000000455 INF: FPGA: Recv ZSGSRD 35632
17-03-18 02:24:19.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:19.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:19.354 -07 000000626 INF: FPGA: Recv ZSGSRD 35620
17-03-18 02:24:19.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:19.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:19.364 -07 000000561 INF: FPGA: Recv ZSGSRD 35631
17-03-18 02:24:19.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:19.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:19.374 -07 000000576 INF: FPGA: Recv ZSGSRD 35634
17-03-18 02:24:19.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:19.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:19.384 -07 000000461 INF: FPGA: Recv ZSGSRD 35630
17-03-18 02:24:19.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:19.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:19.394 -07 000000629 INF: FPGA: Recv ZSGSRD 35628
17-03-18 02:24:19.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:19.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:19.404 -07 000000467 INF: FPGA: Recv ZSGSRD 35629
17-03-18 02:24:19.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:19.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:19.414 -07 000000502 INF: FPGA: Recv ZSGSRD 35638
17-03-18 02:24:19.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:19.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:19.424 -07 000000591 INF: FPGA: Recv ZSGSRD 35635
17-03-18 02:24:19.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:19.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:19.434 -07 000000579 INF: FPGA: Recv ZSGSRD 35627
17-03-18 02:24:19.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:19.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:19.444 -07 000000512 INF: FPGA: Recv ZPIEZORD 31469
17-03-18 02:24:19.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:19.454 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.640 V. Piezo Error = -9.2 V.
17-03-18 02:24:19.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35630 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35630 (-168.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35620 (-168.3 uncal um), Max = 35638 (-168.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 02:24:19.454 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35630, posNoise = 8, negNoise = 10
17-03-18 02:24:19.454 -07 000000610 INF: Z Motor: After move to -0.169206, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:19.454 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 02:24:19.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:24:19.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:24:19.454 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:24:19.454 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:24:19.454 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:24:19.454 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:24:19.454 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:24:19.454 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:24:19.454 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:24:19.454 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:24:19.454 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:24:19.454 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:24:19.464 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:24:19.464 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:24:19.464 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:24:19.464 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:24:19.474 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 02:24:19.474 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:24:19.474 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:24:19.474 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:24:19.474 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37140 150\n [Camera]
17-03-18 02:24:19.674 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:24:20.074 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:24:20.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:24:20.074 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:20.074 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:20.074 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:24:20.074 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:24:20.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:24:20.074 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:20.204 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:20.204 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 02:24:20.264 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37140 780
17-03-18 02:24:20.414 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:24:20.454 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 02:24:20.454 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:24:20.454 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:20.464 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:24:20.464 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:24:20.574 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 02:24:20.574 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 02:24:20.574 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:20.574 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:24:20.584 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 505 ms.
17-03-18 02:24:20.604 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:24:20.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:24:20.604 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:20.604 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:20.604 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:24:20.614 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:24:20.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:24:20.614 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:20.614 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:20.614 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) start.
17-03-18 02:24:20.794 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:24:20.794 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:24:20.794 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37140 150' command took 2 ms to send, 1309 ms to get response, and 1319 ms overall
17-03-18 02:24:20.804 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:24:20.804 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.169218030622078. ------
17-03-18 02:24:20.804 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:24:20.804 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17577 mm
17-03-18 02:24:20.804 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:24:20.804 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:24:20.804 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 38396, sync = True, waitForSettling = False)
17-03-18 02:24:20.804 -07 000000629 INF: Z Motor: Moving to -0.175766 mm, started at -0.169218 mm, distance = -6.55 um
17-03-18 02:24:20.814 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:24:20.814 -07 000000629 INF: FPGA: Xmit ZDACW 38396\n [Z Motor]
17-03-18 02:24:20.814 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 02:24:20.814 -07 000000430 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 02:24:20.814 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:24:20.824 -07 000000629 INF: FPGA: 'ZDACW 38396' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:24:20.824 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:20.824 -07 000000501 INF: FPGA: Recv ZDACR 38396
17-03-18 02:24:20.834 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:20.834 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:20.834 -07 000000629 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 02:24:20.834 -07 000000424 INF: FPGA: Recv YRDPOS 132871
17-03-18 02:24:20.844 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:24:20.844 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:24:20.844 -07 000000430 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:20.844 -07 000000430 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:24:20.844 -07 000000430 INF: Y Motor: Moving 1351 steps-29
17-03-18 02:24:20.854 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:24:20.984 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 02:24:20.984 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:24:20.984 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:20.984 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 02:24:20.984 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 02:24:20.994 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:20.994 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:24:20.994 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:24:20.994 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:24:21.004 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:24:21.044 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:24:21.044 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 02:24:21.234 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 02:24:21.234 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 390 ms overall
17-03-18 02:24:21.274 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:21.274 -07 000000561 INF: FPGA: Recv YRDPOS 134581
17-03-18 02:24:21.284 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:24:21.284 -07 000000430 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:21.284 -07 000000430 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:24:21.284 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.844 mm, average velocity = 2.165 mm/sec
17-03-18 02:24:21.474 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:24:21.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:24:22.244 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:22.244 -07 000000629 INF: FPGA: Recv YRDPOS 134582
17-03-18 02:24:22.254 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:24:22.254 -07 000000430 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:22.284 -07 000000430 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:24:22.284 -07 000000430 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:24:22.284 -07 000000430 INF: Y Motor: Moved to 65.7139 after 1472 ms (table move)
17-03-18 02:24:22.284 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175766 mm (DAC = 38396)
17-03-18 02:24:22.284 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:22.294 -07 000000561 INF: FPGA: Recv ZSGSRD 36660
17-03-18 02:24:22.294 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 02:24:22.294 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:22.294 -07 000000461 INF: FPGA: Recv ZSGSRD 36644
17-03-18 02:24:22.304 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:22.304 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:22.304 -07 000000462 INF: FPGA: Recv ZSGSRD 36643
17-03-18 02:24:22.314 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:22.314 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:22.314 -07 000000579 INF: FPGA: Recv ZSGSRD 36652
17-03-18 02:24:22.324 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:22.324 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:22.324 -07 000000502 INF: FPGA: Recv ZSGSRD 36652
17-03-18 02:24:22.334 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:22.334 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:22.334 -07 000000561 INF: FPGA: Recv ZSGSRD 36657
17-03-18 02:24:22.344 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:22.344 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:22.344 -07 000000618 INF: FPGA: Recv ZSGSRD 36654
17-03-18 02:24:22.354 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:22.354 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:22.354 -07 000000501 INF: FPGA: Recv ZSGSRD 36649
17-03-18 02:24:22.364 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:22.364 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:22.364 -07 000000424 INF: FPGA: Recv ZSGSRD 36656
17-03-18 02:24:22.374 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:22.374 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:22.374 -07 000000444 INF: FPGA: Recv ZSGSRD 36640
17-03-18 02:24:22.384 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:22.384 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:22.384 -07 000000512 INF: FPGA: Recv ZPIEZORD 32809
17-03-18 02:24:22.394 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:22.394 -07 000000606 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.859 V. Piezo Error = -8.5 V.
17-03-18 02:24:22.394 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36651 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36652 (-174.9 uncal um), StdDev = 7 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36640 (-174.8 uncal um), Max = 36660 (-174.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 02:24:22.394 -07 000000606 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36651, posNoise = 9, negNoise = 11
17-03-18 02:24:22.394 -07 000000606 INF: Z Motor: After move to -0.175766, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:22.394 -07 000000606 INF: Z Motor: Settle wait time = 1477 ms, measure time = 104 ms (allowed 150 ms), total time = 1581 ms
17-03-18 02:24:22.394 -07 000000606 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 02:24:22.444 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-18 02:24:22.444 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:24:22.444 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:24:22.444 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:24:22.444 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:24:22.444 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:24:22.444 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:24:22.444 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:24:22.444 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:24:22.444 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:24:22.454 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:24:22.454 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:24:22.464 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 02:24:22.464 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:24:22.464 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:24:22.504 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:24:22.804 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:24:22.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:24:22.804 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:24:22.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111624864, 0x0, 559484976) start.
17-03-18 02:24:22.844 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:24:22.844 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 02:24:22.844 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:24:22.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111624864, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:24:22.934 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:22.934 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:24:22.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:24:23.044 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:24:23.044 -07 000000455 INF: Autofocus start
17-03-18 02:24:23.044 -07 000000455 INF: MeasureProfile start
17-03-18 02:24:23.044 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:24:23.054 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:24:23.054 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:24:23.054 -07 000000455 INF: MeasureProfile done
17-03-18 02:24:23.054 -07 000000455 INF: X=128  Z correction [um]=0.5828849
17-03-18 02:24:23.054 -07 000000455 INF: Autofocus finished
17-03-18 02:24:23.254 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:24:23.254 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-18 02:24:23.264 -07 000000610 INF: Suspending Skipping AutoFocus for the next 6 cycles.
17-03-18 02:24:23.264 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.175777151218816. ----------
17-03-18 02:24:23.264 -07 000000610 INF: Cycle	99	Tile	8	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:24:23.264 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37036, sync = True, waitForSettling = True)
17-03-18 02:24:23.264 -07 000000610 INF: Z Motor: Moving to -0.169540 mm, started at -0.175777 mm, distance = 6.24 um
17-03-18 02:24:23.264 -07 000000610 INF: FPGA: Xmit ZDACW 37036\n [Z Motor]
17-03-18 02:24:23.264 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:24:23.274 -07 000000610 INF: FPGA: 'ZDACW 37036' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:24:23.274 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:23.274 -07 000000512 INF: FPGA: Recv ZDACR 37036
17-03-18 02:24:23.284 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:23.284 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:24:23.314 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 4.019446,
17-03-18 02:24:23.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:23.434 -07 000000467 INF: FPGA: Recv ZSGSRD 35679
17-03-18 02:24:23.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:24:23.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:23.444 -07 000000590 INF: FPGA: Recv ZSGSRD 35681
17-03-18 02:24:23.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:23.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:23.454 -07 000000455 INF: FPGA: Recv ZSGSRD 35677
17-03-18 02:24:23.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:23.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:23.464 -07 000000591 INF: FPGA: Recv ZSGSRD 35686
17-03-18 02:24:23.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:23.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:23.474 -07 000000606 INF: FPGA: Recv ZSGSRD 35680
17-03-18 02:24:23.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:23.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:23.484 -07 000000576 INF: FPGA: Recv ZSGSRD 35680
17-03-18 02:24:23.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:23.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:23.494 -07 000000569 INF: FPGA: Recv ZSGSRD 35676
17-03-18 02:24:23.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:23.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:23.504 -07 000000512 INF: FPGA: Recv ZSGSRD 35679
17-03-18 02:24:23.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:23.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:23.514 -07 000000629 INF: FPGA: Recv ZSGSRD 35687
17-03-18 02:24:23.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:23.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:23.524 -07 000000430 INF: FPGA: Recv ZSGSRD 35682
17-03-18 02:24:23.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:23.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:23.534 -07 000000467 INF: FPGA: Recv ZPIEZORD 31505
17-03-18 02:24:23.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:23.544 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.651 V. Piezo Error = -9.2 V.
17-03-18 02:24:23.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35681 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35680 (-168.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35676 (-168.6 uncal um), Max = 35687 (-168.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:24:23.544 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35681, posNoise = 6, negNoise = 5
17-03-18 02:24:23.544 -07 000000610 INF: Z Motor: After move to -0.169540, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:23.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:24:23.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:24:23.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:24:23.544 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:24:23.544 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:24:23.544 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:24:23.544 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:24:23.544 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:24:23.544 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:24:23.544 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:24:23.544 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:24:23.544 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:24:23.544 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:24:23.554 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:24:23.554 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:24:23.554 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:24:23.554 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:24:23.564 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:24:23.564 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:24:23.564 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:24:23.564 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:24:23.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37213 150\n [Camera]
17-03-18 02:24:23.764 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:24:24.154 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:24:24.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:24:24.164 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:24.164 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:24.164 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:24:24.164 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:24:24.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:24:24.164 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:24.164 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:24.164 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:24:24.354 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37213 780
17-03-18 02:24:24.504 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:24:24.534 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 02:24:24.534 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 02:24:24.534 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:24.534 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:24:24.534 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 02:24:24.534 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 02:24:24.534 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:24.544 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:24:24.544 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:24:24.544 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 02:24:24.694 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:24:24.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:24:24.694 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:24.814 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:24:24.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:24:24.814 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:24.814 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:24:24.814 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:24.814 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:24.814 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:24:24.884 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:24:24.884 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:24:24.884 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37213 150' command took 2 ms to send, 1313 ms to get response, and 1319 ms overall
17-03-18 02:24:24.884 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:24:24.884 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.169545665441308. ------
17-03-18 02:24:24.884 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17600 mm
17-03-18 02:24:24.884 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:24:24.884 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:24:24.894 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 02:24:24.894 -07 000000591 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-18 02:24:24.894 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:24.894 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 38448, sync = True, waitForSettling = False)
17-03-18 02:24:24.894 -07 000000430 INF: Z Motor: Moving to -0.176004 mm, started at -0.169546 mm, distance = -6.46 um
17-03-18 02:24:24.894 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:24:24.894 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:24:24.894 -07 000000444 INF: FPGA: Recv YRDPOS 134582
17-03-18 02:24:24.904 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:24.904 -07 000000591 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:24.904 -07 000000591 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:24:24.904 -07 000000591 INF: Y Motor: Moving 1342 steps-19
17-03-18 02:24:24.904 -07 000000430 INF: FPGA: Xmit ZDACW 38448\n [Z Motor]
17-03-18 02:24:24.904 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:24:24.914 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:24:24.914 -07 000000430 INF: FPGA: 'ZDACW 38448' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:24:24.924 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:24:24.934 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:24.934 -07 000000629 INF: FPGA: Recv ZDACR 38448
17-03-18 02:24:24.944 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:24:24.944 -07 000000430 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 02:24:25.114 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:24:25.114 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 223 ms overall
17-03-18 02:24:25.204 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 02:24:25.204 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:24:25.204 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:25.204 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:24:25.204 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:24:25.204 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:25.214 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:24:25.214 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:24:25.214 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-18 02:24:25.214 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 02:24:25.294 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 02:24:25.294 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:24:25.344 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:25.344 -07 000000606 INF: FPGA: Recv YRDPOS 136271
17-03-18 02:24:25.354 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:24:25.354 -07 000000591 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:25.354 -07 000000591 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:24:25.354 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-18 02:24:26.304 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:26.304 -07 000000606 INF: FPGA: Recv YRDPOS 136271
17-03-18 02:24:26.314 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:26.314 -07 000000591 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:26.344 -07 000000591 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:24:26.344 -07 000000591 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:24:26.344 -07 000000591 INF: Y Motor: Moved to 66.5386 after 1450 ms (table move)
17-03-18 02:24:26.344 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176004 mm (DAC = 38448)
17-03-18 02:24:26.344 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:26.344 -07 000000629 INF: FPGA: Recv ZSGSRD 36692
17-03-18 02:24:26.354 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:24:26.354 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:26.354 -07 000000576 INF: FPGA: Recv ZSGSRD 36688
17-03-18 02:24:26.364 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:26.364 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:26.364 -07 000000444 INF: FPGA: Recv ZSGSRD 36695
17-03-18 02:24:26.374 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:26.374 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:26.374 -07 000000424 INF: FPGA: Recv ZSGSRD 36693
17-03-18 02:24:26.384 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:26.384 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:26.384 -07 000000591 INF: FPGA: Recv ZSGSRD 36685
17-03-18 02:24:26.394 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:26.394 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:26.394 -07 000000461 INF: FPGA: Recv ZSGSRD 36685
17-03-18 02:24:26.404 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:26.404 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:26.404 -07 000000576 INF: FPGA: Recv ZSGSRD 36683
17-03-18 02:24:26.414 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:26.414 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:26.414 -07 000000462 INF: FPGA: Recv ZSGSRD 36685
17-03-18 02:24:26.424 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:26.424 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:26.424 -07 000000606 INF: FPGA: Recv ZSGSRD 36685
17-03-18 02:24:26.434 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:26.434 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:26.434 -07 000000502 INF: FPGA: Recv ZSGSRD 36691
17-03-18 02:24:26.444 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:26.444 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:26.444 -07 000000467 INF: FPGA: Recv ZPIEZORD 32887
17-03-18 02:24:26.454 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:26.454 -07 000000501 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.867 V. Piezo Error = -8.4 V.
17-03-18 02:24:26.454 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36688 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36686 (-175.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36683 (-175.1 uncal um), Max = 36695 (-175.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:24:26.454 -07 000000501 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36688, posNoise = 7, negNoise = 5
17-03-18 02:24:26.454 -07 000000501 INF: Z Motor: After move to -0.176004, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:26.454 -07 000000501 INF: Z Motor: Settle wait time = 1453 ms, measure time = 106 ms (allowed 150 ms), total time = 1559 ms
17-03-18 02:24:26.454 -07 000000501 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:24:26.474 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:24:26.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:24:26.504 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 02:24:26.504 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:24:26.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:24:26.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:24:26.504 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:24:26.504 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:24:26.504 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:24:26.504 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:24:26.504 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:24:26.504 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:24:26.514 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:24:26.514 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:24:26.514 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:24:26.514 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:24:26.524 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:24:26.564 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:24:26.864 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:24:26.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:24:26.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:24:26.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:24:26.904 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:24:26.904 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 02:24:26.904 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:24:26.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:24:26.984 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:26.984 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:24:26.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:24:27.004 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:24:27.004 -07 000000430 INF: Autofocus start
17-03-18 02:24:27.004 -07 000000430 INF: MeasureProfile start
17-03-18 02:24:27.004 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:24:27.014 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:24:27.014 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:24:27.014 -07 000000430 INF: MeasureProfile done
17-03-18 02:24:27.014 -07 000000430 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 02:24:27.014 -07 000000430 INF: Autofocus finished
17-03-18 02:24:27.214 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:24:27.214 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:24:27.214 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.176014847068061. ----------
17-03-18 02:24:27.224 -07 000000610 INF: Cycle	99	Tile	9	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:24:27.224 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36928, sync = True, waitForSettling = True)
17-03-18 02:24:27.224 -07 000000610 INF: Z Motor: Moving to -0.169046 mm, started at -0.176015 mm, distance = 6.97 um
17-03-18 02:24:27.224 -07 000000610 INF: FPGA: Xmit ZDACW 36928\n [Z Motor]
17-03-18 02:24:27.224 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:24:27.234 -07 000000610 INF: FPGA: 'ZDACW 36928' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:24:27.234 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:27.234 -07 000000579 INF: FPGA: Recv ZDACR 36928
17-03-18 02:24:27.244 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:27.244 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:24:27.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:27.394 -07 000000430 INF: FPGA: Recv ZSGSRD 35602
17-03-18 02:24:27.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:27.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:27.404 -07 000000455 INF: FPGA: Recv ZSGSRD 35601
17-03-18 02:24:27.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:24:27.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:27.414 -07 000000561 INF: FPGA: Recv ZSGSRD 35608
17-03-18 02:24:27.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:27.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:27.424 -07 000000462 INF: FPGA: Recv ZSGSRD 35602
17-03-18 02:24:27.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:27.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:27.434 -07 000000606 INF: FPGA: Recv ZSGSRD 35609
17-03-18 02:24:27.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:27.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:27.444 -07 000000626 INF: FPGA: Recv ZSGSRD 35598
17-03-18 02:24:27.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:24:27.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:27.454 -07 000000444 INF: FPGA: Recv ZSGSRD 35602
17-03-18 02:24:27.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:27.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:27.464 -07 000000424 INF: FPGA: Recv ZSGSRD 35610
17-03-18 02:24:27.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:27.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:27.474 -07 000000569 INF: FPGA: Recv ZSGSRD 35603
17-03-18 02:24:27.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:27.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:27.484 -07 000000606 INF: FPGA: Recv ZSGSRD 35610
17-03-18 02:24:27.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:27.494 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:27.494 -07 000000467 INF: FPGA: Recv ZPIEZORD 31392
17-03-18 02:24:27.504 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:27.504 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.635 V. Piezo Error = -9.3 V.
17-03-18 02:24:27.504 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35604 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35602 (-168.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35598 (-168.1 uncal um), Max = 35610 (-168.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:24:27.504 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35604, posNoise = 6, negNoise = 6
17-03-18 02:24:27.504 -07 000000610 INF: Z Motor: After move to -0.169046, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:27.504 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:24:27.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:24:27.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:24:27.504 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:24:27.504 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:24:27.504 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:24:27.504 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:24:27.504 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:24:27.504 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:24:27.504 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:24:27.504 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:24:27.504 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:24:27.504 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:24:27.514 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:24:27.514 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:24:27.514 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:24:27.514 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:24:27.524 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 02:24:27.524 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:24:27.524 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 02:24:27.524 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:24:27.524 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37105 150\n [Camera]
17-03-18 02:24:27.724 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:24:28.124 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:24:28.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:24:28.124 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:28.124 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:28.124 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1145266312, 0x0, 391868352) start.
17-03-18 02:24:28.124 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:24:28.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:24:28.124 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:28.124 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:28.124 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:24:28.314 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37105 780
17-03-18 02:24:28.464 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:24:28.504 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:24:28.504 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:24:28.504 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:28.504 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:24:28.504 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1145266312, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 02:24:28.504 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:24:28.504 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:28.514 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:24:28.514 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:24:28.514 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:24:28.654 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:24:28.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:24:28.654 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:28.764 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:24:28.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:24:28.774 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:28.774 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:28.774 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:24:28.774 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 4.018051,
17-03-18 02:24:28.774 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:28.774 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:24:28.844 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:24:28.844 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:24:28.844 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37105 150' command took 2 ms to send, 1316 ms to get response, and 1319 ms overall
17-03-18 02:24:28.844 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:24:28.844 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.169051001106392. ------
17-03-18 02:24:28.854 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:24:28.854 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17594 mm
17-03-18 02:24:28.854 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:24:28.854 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:24:28.854 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 02:24:28.854 -07 000000444 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 02:24:28.854 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38434, sync = True, waitForSettling = False)
17-03-18 02:24:28.854 -07 000000462 INF: Z Motor: Moving to -0.175940 mm, started at -0.169051 mm, distance = -6.89 um
17-03-18 02:24:28.864 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:28.864 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:24:28.864 -07 000000606 INF: FPGA: Recv YRDPOS 136271
17-03-18 02:24:28.874 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:24:28.874 -07 000000444 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:28.874 -07 000000444 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:24:28.874 -07 000000444 INF: Y Motor: Moving 1350 steps-29
17-03-18 02:24:28.874 -07 000000462 INF: FPGA: Xmit ZDACW 38434\n [Z Motor]
17-03-18 02:24:28.874 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:24:28.884 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:24:28.884 -07 000000462 INF: FPGA: 'ZDACW 38434' command took 1 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:24:28.894 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:24:28.904 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:28.904 -07 000000569 INF: FPGA: Recv ZDACR 38434
17-03-18 02:24:28.914 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:24:28.914 -07 000000462 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 02:24:29.084 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:24:29.084 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 02:24:29.174 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 02:24:29.174 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:24:29.174 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:29.174 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 02:24:29.174 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:24:29.174 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:29.174 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:24:29.174 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 02:24:29.174 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:24:29.184 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:24:29.264 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 02:24:29.264 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:24:29.314 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:29.314 -07 000000462 INF: FPGA: Recv YRDPOS 137976
17-03-18 02:24:29.324 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:24:29.324 -07 000000444 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:29.324 -07 000000444 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 02:24:29.324 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 02:24:30.274 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:30.274 -07 000000424 INF: FPGA: Recv YRDPOS 137977
17-03-18 02:24:30.284 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:24:30.284 -07 000000444 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:30.304 -07 000000444 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:24:30.304 -07 000000444 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:24:30.304 -07 000000444 INF: Y Motor: Moved to 67.3716 after 1452 ms (table move)
17-03-18 02:24:30.314 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175940 mm (DAC = 38434)
17-03-18 02:24:30.314 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:30.314 -07 000000512 INF: FPGA: Recv ZSGSRD 36674
17-03-18 02:24:30.324 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:24:30.324 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:30.324 -07 000000430 INF: FPGA: Recv ZSGSRD 36683
17-03-18 02:24:30.334 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:30.334 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:30.334 -07 000000502 INF: FPGA: Recv ZSGSRD 36684
17-03-18 02:24:30.344 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:30.344 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:30.344 -07 000000590 INF: FPGA: Recv ZSGSRD 36679
17-03-18 02:24:30.354 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:24:30.354 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:30.354 -07 000000569 INF: FPGA: Recv ZSGSRD 36671
17-03-18 02:24:30.364 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:30.364 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:30.364 -07 000000455 INF: FPGA: Recv ZSGSRD 36680
17-03-18 02:24:30.374 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:30.374 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:30.374 -07 000000424 INF: FPGA: Recv ZSGSRD 36675
17-03-18 02:24:30.384 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:30.384 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:30.384 -07 000000591 INF: FPGA: Recv ZSGSRD 36675
17-03-18 02:24:30.394 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:30.394 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:30.394 -07 000000430 INF: FPGA: Recv ZSGSRD 36676
17-03-18 02:24:30.404 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:30.404 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:30.404 -07 000000629 INF: FPGA: Recv ZSGSRD 36682
17-03-18 02:24:30.414 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:30.414 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:30.414 -07 000000455 INF: FPGA: Recv ZPIEZORD 32866
17-03-18 02:24:30.424 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:30.424 -07 000000626 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.865 V. Piezo Error = -8.4 V.
17-03-18 02:24:30.424 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36678 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36678 (-175.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36671 (-175.0 uncal um), Max = 36684 (-175.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:24:30.424 -07 000000626 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36678, posNoise = 6, negNoise = 7
17-03-18 02:24:30.424 -07 000000626 INF: Z Motor: After move to -0.175940, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:30.424 -07 000000626 INF: Z Motor: Settle wait time = 1456 ms, measure time = 108 ms (allowed 150 ms), total time = 1564 ms
17-03-18 02:24:30.424 -07 000000626 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:24:30.474 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 02:24:30.474 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:24:30.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:24:30.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:24:30.474 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:24:30.474 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:24:30.474 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:24:30.474 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:24:30.474 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:24:30.474 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:24:30.484 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:24:30.484 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:24:30.494 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 02:24:30.494 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 02:24:30.494 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:24:30.544 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:24:30.844 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:24:30.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:24:30.844 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:24:30.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-18 02:24:30.884 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:24:30.884 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 02:24:30.884 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 387 ms overall
17-03-18 02:24:30.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:24:30.974 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:30.974 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:24:30.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:24:30.984 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:24:30.984 -07 000000467 INF: Autofocus start
17-03-18 02:24:30.984 -07 000000467 INF: MeasureProfile start
17-03-18 02:24:30.984 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:24:30.994 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:24:30.994 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:24:30.994 -07 000000467 INF: MeasureProfile done
17-03-18 02:24:30.994 -07 000000467 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:24:30.994 -07 000000467 INF: Autofocus finished
17-03-18 02:24:31.194 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:24:31.194 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:24:31.194 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.175950604946643. ----------
17-03-18 02:24:31.194 -07 000000610 INF: Cycle	99	Tile	10	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:24:31.204 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36931, sync = True, waitForSettling = True)
17-03-18 02:24:31.204 -07 000000610 INF: Z Motor: Moving to -0.169059 mm, started at -0.175951 mm, distance = 6.89 um
17-03-18 02:24:31.204 -07 000000610 INF: FPGA: Xmit ZDACW 36931\n [Z Motor]
17-03-18 02:24:31.204 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:24:31.214 -07 000000610 INF: FPGA: 'ZDACW 36931' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:31.214 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:31.214 -07 000000606 INF: FPGA: Recv ZDACR 36931
17-03-18 02:24:31.224 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:31.224 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:24:31.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:31.374 -07 000000590 INF: FPGA: Recv ZSGSRD 35615
17-03-18 02:24:31.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:24:31.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:31.384 -07 000000444 INF: FPGA: Recv ZSGSRD 35606
17-03-18 02:24:31.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:31.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:31.394 -07 000000591 INF: FPGA: Recv ZSGSRD 35615
17-03-18 02:24:31.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:31.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:31.404 -07 000000618 INF: FPGA: Recv ZSGSRD 35601
17-03-18 02:24:31.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:31.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:31.414 -07 000000455 INF: FPGA: Recv ZSGSRD 35607
17-03-18 02:24:31.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:31.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:31.424 -07 000000512 INF: FPGA: Recv ZSGSRD 35608
17-03-18 02:24:31.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:31.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:31.434 -07 000000467 INF: FPGA: Recv ZSGSRD 35606
17-03-18 02:24:31.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:31.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:31.444 -07 000000606 INF: FPGA: Recv ZSGSRD 35614
17-03-18 02:24:31.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:31.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:31.454 -07 000000502 INF: FPGA: Recv ZSGSRD 35606
17-03-18 02:24:31.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:24:31.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:31.464 -07 000000467 INF: FPGA: Recv ZSGSRD 35603
17-03-18 02:24:31.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:31.474 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:31.474 -07 000000444 INF: FPGA: Recv ZPIEZORD 31425
17-03-18 02:24:31.474 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:24:31.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:24:31.484 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:31.484 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.635 V. Piezo Error = -9.2 V.
17-03-18 02:24:31.484 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35608 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35606 (-168.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35601 (-168.2 uncal um), Max = 35615 (-168.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:24:31.484 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35608, posNoise = 7, negNoise = 7
17-03-18 02:24:31.484 -07 000000610 INF: Z Motor: After move to -0.169059, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:31.484 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:24:31.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:24:31.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:24:31.484 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:24:31.484 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:24:31.484 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:24:31.484 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:24:31.484 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:24:31.484 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:24:31.484 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:24:31.484 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:24:31.484 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:24:31.484 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:24:31.484 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:24:31.484 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:24:31.484 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:24:31.484 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:24:31.494 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:24:31.494 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:24:31.494 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:24:31.494 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:24:31.504 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37107 150\n [Camera]
17-03-18 02:24:31.704 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 02:24:32.094 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:24:32.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:24:32.094 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:32.094 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:32.094 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:24:32.104 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:24:32.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:24:32.104 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:32.104 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:32.104 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) start.
17-03-18 02:24:32.284 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37107 780
17-03-18 02:24:32.434 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:24:32.484 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 02:24:32.484 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 02:24:32.484 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:24:32.484 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:32.484 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 02:24:32.484 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:32.484 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:24:32.484 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:24:32.484 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:24:32.494 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:24:32.624 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:24:32.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:24:32.634 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:32.634 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:24:32.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:24:32.634 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:32.634 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:24:32.634 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:32.634 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:32.634 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:24:32.824 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:24:32.824 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:24:32.824 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37107 150' command took 2 ms to send, 1311 ms to get response, and 1319 ms overall
17-03-18 02:24:32.824 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:24:32.824 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.169076697954959. ------
17-03-18 02:24:32.954 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17526 mm
17-03-18 02:24:32.954 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:24:32.954 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 02:24:32.954 -07 000000626 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 02:24:32.954 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 38285, sync = True, waitForSettling = False)
17-03-18 02:24:32.954 -07 000000606 INF: Z Motor: Moving to -0.175257 mm, started at -0.169077 mm, distance = -6.18 um
17-03-18 02:24:32.964 -07 000000606 INF: FPGA: Xmit ZDACW 38285\n [Z Motor]
17-03-18 02:24:32.964 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:24:32.974 -07 000000606 INF: FPGA: 'ZDACW 38285' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:24:32.974 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:24:32.974 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:24:32.984 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:32.984 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:24:32.984 -07 000000590 INF: FPGA: Recv YRDPOS 137977
17-03-18 02:24:32.994 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:32.994 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 35 ms overall
17-03-18 02:24:32.994 -07 000000626 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:32.994 -07 000000626 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:24:32.994 -07 000000626 INF: Y Motor: Moving 1346 steps-24
17-03-18 02:24:32.994 -07 000000444 INF: FPGA: Recv ZDACR 38285
17-03-18 02:24:33.004 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:24:33.004 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:24:33.004 -07 000000606 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 02:24:33.014 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:24:33.024 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 02:24:33.024 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 02:24:33.024 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:24:33.024 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:33.024 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:24:33.024 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:33.024 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:24:33.024 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:24:33.024 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:24:33.034 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:24:33.204 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:24:33.204 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:24:33.384 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 02:24:33.384 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:24:33.434 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:33.434 -07 000000576 INF: FPGA: Recv YRDPOS 139683
17-03-18 02:24:33.444 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:24:33.444 -07 000000626 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:33.444 -07 000000626 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 02:24:33.444 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.118 mm/sec
17-03-18 02:24:34.134 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 3.983999,
17-03-18 02:24:34.394 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:34.394 -07 000000579 INF: FPGA: Recv YRDPOS 139684
17-03-18 02:24:34.404 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:34.404 -07 000000626 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:34.424 -07 000000626 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:24:34.424 -07 000000626 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:24:34.424 -07 000000626 INF: Y Motor: Moved to 68.2051 after 1472 ms (table move)
17-03-18 02:24:34.434 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175257 mm (DAC = 38285)
17-03-18 02:24:34.434 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:34.434 -07 000000576 INF: FPGA: Recv ZSGSRD 36571
17-03-18 02:24:34.444 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:34.444 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:34.444 -07 000000606 INF: FPGA: Recv ZSGSRD 36573
17-03-18 02:24:34.454 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:34.454 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:34.454 -07 000000576 INF: FPGA: Recv ZSGSRD 36574
17-03-18 02:24:34.464 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:34.464 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:34.464 -07 000000629 INF: FPGA: Recv ZSGSRD 36570
17-03-18 02:24:34.474 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:34.474 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:34.474 -07 000000444 INF: FPGA: Recv ZSGSRD 36567
17-03-18 02:24:34.484 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:34.484 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:34.484 -07 000000462 INF: FPGA: Recv ZSGSRD 36576
17-03-18 02:24:34.494 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:34.494 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:34.494 -07 000000626 INF: FPGA: Recv ZSGSRD 36569
17-03-18 02:24:34.504 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:34.504 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:34.504 -07 000000561 INF: FPGA: Recv ZSGSRD 36571
17-03-18 02:24:34.514 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:34.514 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:34.514 -07 000000502 INF: FPGA: Recv ZSGSRD 36570
17-03-18 02:24:34.524 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:34.524 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:34.524 -07 000000444 INF: FPGA: Recv ZSGSRD 36574
17-03-18 02:24:34.534 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:34.534 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:34.534 -07 000000462 INF: FPGA: Recv ZPIEZORD 32751
17-03-18 02:24:34.544 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:34.544 -07 000000591 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.842 V. Piezo Error = -8.5 V.
17-03-18 02:24:34.544 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36572 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36571 (-174.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36567 (-174.4 uncal um), Max = 36576 (-174.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:24:34.544 -07 000000591 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36572, posNoise = 4, negNoise = 5
17-03-18 02:24:34.544 -07 000000591 INF: Z Motor: After move to -0.175257, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:34.544 -07 000000591 INF: Z Motor: Settle wait time = 1474 ms, measure time = 110 ms (allowed 150 ms), total time = 1584 ms
17-03-18 02:24:34.544 -07 000000591 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:24:34.584 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-18 02:24:34.584 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:24:34.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:24:34.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:24:34.584 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:24:34.584 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:24:34.584 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:24:34.584 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:24:34.584 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:24:34.584 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:24:34.594 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:24:34.594 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:24:34.594 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:24:34.594 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:24:34.604 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:24:34.644 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:24:34.944 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:24:34.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:24:34.944 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:24:34.944 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:24:34.984 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:24:34.984 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 02:24:34.984 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 386 ms overall
17-03-18 02:24:35.064 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:24:35.064 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:35.064 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:24:35.064 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:24:35.084 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:24:35.084 -07 000000444 INF: Autofocus start
17-03-18 02:24:35.084 -07 000000444 INF: MeasureProfile start
17-03-18 02:24:35.084 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:24:35.094 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:24:35.094 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:24:35.094 -07 000000444 INF: MeasureProfile done
17-03-18 02:24:35.094 -07 000000444 INF: X=64  Z correction [um]=0.2557664
17-03-18 02:24:35.094 -07 000000444 INF: Autofocus finished
17-03-18 02:24:35.294 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:24:35.294 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:24:35.294 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.175269638459617. ----------
17-03-18 02:24:35.294 -07 000000610 INF: Cycle	99	Tile	11	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:24:35.304 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36853, sync = True, waitForSettling = True)
17-03-18 02:24:35.304 -07 000000610 INF: Z Motor: Moving to -0.168702 mm, started at -0.175270 mm, distance = 6.57 um
17-03-18 02:24:35.304 -07 000000610 INF: FPGA: Xmit ZDACW 36853\n [Z Motor]
17-03-18 02:24:35.304 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:24:35.314 -07 000000610 INF: FPGA: 'ZDACW 36853' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:24:35.314 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:35.314 -07 000000576 INF: FPGA: Recv ZDACR 36853
17-03-18 02:24:35.324 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:35.324 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:24:35.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:35.474 -07 000000629 INF: FPGA: Recv ZSGSRD 35548
17-03-18 02:24:35.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:35.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:35.484 -07 000000502 INF: FPGA: Recv ZSGSRD 35555
17-03-18 02:24:35.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:35.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:35.494 -07 000000626 INF: FPGA: Recv ZSGSRD 35551
17-03-18 02:24:35.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:35.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:35.504 -07 000000430 INF: FPGA: Recv ZSGSRD 35551
17-03-18 02:24:35.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:35.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:35.514 -07 000000618 INF: FPGA: Recv ZSGSRD 35552
17-03-18 02:24:35.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:35.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:35.524 -07 000000424 INF: FPGA: Recv ZSGSRD 35550
17-03-18 02:24:35.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:35.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:35.534 -07 000000579 INF: FPGA: Recv ZSGSRD 35561
17-03-18 02:24:35.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:35.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:35.544 -07 000000461 INF: FPGA: Recv ZSGSRD 35553
17-03-18 02:24:35.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:35.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:35.554 -07 000000462 INF: FPGA: Recv ZSGSRD 35552
17-03-18 02:24:35.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:35.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:35.564 -07 000000590 INF: FPGA: Recv ZSGSRD 35556
17-03-18 02:24:35.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:35.574 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:35.574 -07 000000501 INF: FPGA: Recv ZPIEZORD 31381
17-03-18 02:24:35.584 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:35.584 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.623 V. Piezo Error = -9.2 V.
17-03-18 02:24:35.584 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35553 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35552 (-167.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35548 (-167.8 uncal um), Max = 35561 (-167.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:24:35.584 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35553, posNoise = 8, negNoise = 5
17-03-18 02:24:35.584 -07 000000610 INF: Z Motor: After move to -0.168702, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:35.584 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:24:35.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:24:35.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:24:35.584 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:24:35.584 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:24:35.584 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:24:35.584 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:24:35.584 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:24:35.584 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:24:35.584 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:24:35.584 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:24:35.584 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:24:35.584 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:24:35.594 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:24:35.594 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:24:35.594 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:24:35.594 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:24:35.604 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:24:35.604 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:24:35.604 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:24:35.604 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:24:35.604 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37030 150\n [Camera]
17-03-18 02:24:35.804 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:24:36.204 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:24:36.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:24:36.204 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:36.204 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:36.204 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:24:36.204 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:24:36.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:24:36.204 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:36.204 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:36.204 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) start.
17-03-18 02:24:36.394 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37030 780
17-03-18 02:24:36.474 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:24:36.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:24:36.544 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:24:36.584 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 02:24:36.584 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:24:36.584 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:36.584 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:24:36.594 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 02:24:36.594 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:24:36.594 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:36.594 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:24:36.594 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:24:36.594 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:24:36.734 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:24:36.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:24:36.734 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:36.734 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:36.734 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:24:36.734 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:24:36.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:24:36.734 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:36.734 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:36.734 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:24:36.924 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:24:36.924 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:24:36.924 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37030 150' command took 2 ms to send, 1313 ms to get response, and 1320 ms overall
17-03-18 02:24:36.924 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:24:36.924 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.168723366287162. ------
17-03-18 02:24:36.934 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:24:36.934 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17526 mm
17-03-18 02:24:36.934 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:24:36.934 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 02:24:36.934 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:24:36.934 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38285, sync = True, waitForSettling = False)
17-03-18 02:24:36.934 -07 000000461 INF: Z Motor: Moving to -0.175257 mm, started at -0.168723 mm, distance = -6.53 um
17-03-18 02:24:36.934 -07 000000606 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-18 02:24:36.944 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:36.944 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:36.944 -07 000000502 INF: FPGA: Recv YRDPOS 139684
17-03-18 02:24:36.954 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:24:36.954 -07 000000461 INF: FPGA: Xmit ZDACW 38285\n [Z Motor]
17-03-18 02:24:36.954 -07 000000606 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:36.954 -07 000000606 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:24:36.954 -07 000000606 INF: Y Motor: Moving 1340 steps-16
17-03-18 02:24:36.954 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 02:24:36.964 -07 000000461 INF: FPGA: 'ZDACW 38285' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:24:36.964 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:24:36.974 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:24:36.984 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:36.984 -07 000000561 INF: FPGA: Recv ZDACR 38285
17-03-18 02:24:36.994 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:24:36.994 -07 000000461 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 02:24:37.134 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 02:24:37.134 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:24:37.134 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:37.134 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:24:37.134 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:24:37.134 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:37.144 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:24:37.144 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:24:37.144 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:24:37.144 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:24:37.164 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:24:37.164 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 02:24:37.344 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 02:24:37.344 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:24:37.394 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:37.394 -07 000000569 INF: FPGA: Recv YRDPOS 141366
17-03-18 02:24:37.404 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:24:37.404 -07 000000606 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:37.404 -07 000000606 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 02:24:37.404 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-18 02:24:38.354 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:38.354 -07 000000424 INF: FPGA: Recv YRDPOS 141367
17-03-18 02:24:38.364 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:38.364 -07 000000606 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:38.384 -07 000000606 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:24:38.384 -07 000000606 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:24:38.384 -07 000000606 INF: Y Motor: Moved to 69.0269 after 1455 ms (table move)
17-03-18 02:24:38.394 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175257 mm (DAC = 38285)
17-03-18 02:24:38.394 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:38.394 -07 000000502 INF: FPGA: Recv ZSGSRD 36581
17-03-18 02:24:38.404 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:24:38.404 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:38.404 -07 000000629 INF: FPGA: Recv ZSGSRD 36577
17-03-18 02:24:38.414 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:38.414 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:38.414 -07 000000590 INF: FPGA: Recv ZSGSRD 36572
17-03-18 02:24:38.424 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:38.424 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:38.424 -07 000000430 INF: FPGA: Recv ZSGSRD 36567
17-03-18 02:24:38.434 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:38.434 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:38.434 -07 000000561 INF: FPGA: Recv ZSGSRD 36572
17-03-18 02:24:38.444 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:38.444 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:38.444 -07 000000462 INF: FPGA: Recv ZSGSRD 36567
17-03-18 02:24:38.454 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:38.454 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:38.454 -07 000000512 INF: FPGA: Recv ZSGSRD 36569
17-03-18 02:24:38.464 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:38.464 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:38.464 -07 000000618 INF: FPGA: Recv ZSGSRD 36569
17-03-18 02:24:38.474 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:38.474 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:38.474 -07 000000455 INF: FPGA: Recv ZSGSRD 36576
17-03-18 02:24:38.484 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:38.484 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:38.484 -07 000000590 INF: FPGA: Recv ZSGSRD 36578
17-03-18 02:24:38.494 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:38.494 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:38.494 -07 000000461 INF: FPGA: Recv ZPIEZORD 32769
17-03-18 02:24:38.504 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:38.504 -07 000000576 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.842 V. Piezo Error = -8.4 V.
17-03-18 02:24:38.504 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36573 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36572 (-174.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36567 (-174.4 uncal um), Max = 36581 (-174.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:24:38.504 -07 000000576 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36573, posNoise = 8, negNoise = 6
17-03-18 02:24:38.504 -07 000000576 INF: Z Motor: After move to -0.175257, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:38.504 -07 000000576 INF: Z Motor: Settle wait time = 1460 ms, measure time = 107 ms (allowed 150 ms), total time = 1567 ms
17-03-18 02:24:38.504 -07 000000576 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:24:38.554 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 02:24:38.554 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:24:38.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:24:38.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:24:38.554 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:24:38.554 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:24:38.554 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:24:38.554 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:24:38.554 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:24:38.554 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:24:38.564 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:24:38.564 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:24:38.564 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:24:38.564 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:24:38.574 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:24:38.614 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:24:38.914 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:24:38.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:24:38.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:24:38.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111624864, 0x0, 559484976) start.
17-03-18 02:24:38.954 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:24:38.954 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 02:24:38.954 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:24:39.034 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111624864, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:24:39.034 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:39.034 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:24:39.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:24:39.054 -07 000000579 INF: Autofocus start
17-03-18 02:24:39.054 -07 000000579 INF: MeasureProfile start
17-03-18 02:24:39.054 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:24:39.054 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:24:39.064 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:24:39.064 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:24:39.064 -07 000000579 INF: MeasureProfile done
17-03-18 02:24:39.064 -07 000000579 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:24:39.064 -07 000000579 INF: Autofocus finished
17-03-18 02:24:39.264 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:24:39.264 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:24:39.264 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.175276062671758. ----------
17-03-18 02:24:39.264 -07 000000610 INF: Cycle	99	Tile	12	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:24:39.274 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36818, sync = True, waitForSettling = True)
17-03-18 02:24:39.274 -07 000000610 INF: Z Motor: Moving to -0.168542 mm, started at -0.175276 mm, distance = 6.73 um
17-03-18 02:24:39.274 -07 000000610 INF: FPGA: Xmit ZDACW 36818\n [Z Motor]
17-03-18 02:24:39.274 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:24:39.284 -07 000000610 INF: FPGA: 'ZDACW 36818' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:24:39.284 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:39.284 -07 000000512 INF: FPGA: Recv ZDACR 36818
17-03-18 02:24:39.294 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:39.294 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:24:39.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:39.444 -07 000000569 INF: FPGA: Recv ZSGSRD 35520
17-03-18 02:24:39.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:24:39.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:39.454 -07 000000590 INF: FPGA: Recv ZSGSRD 35530
17-03-18 02:24:39.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:39.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:39.464 -07 000000444 INF: FPGA: Recv ZSGSRD 35523
17-03-18 02:24:39.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:39.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:39.474 -07 000000467 INF: FPGA: Recv ZSGSRD 35524
17-03-18 02:24:39.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:39.494 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 3.977204,
17-03-18 02:24:39.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:39.504 -07 000000467 INF: FPGA: Recv ZSGSRD 35532
17-03-18 02:24:39.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:24:39.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:39.524 -07 000000576 INF: FPGA: Recv ZSGSRD 35522
17-03-18 02:24:39.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:24:39.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:39.534 -07 000000467 INF: FPGA: Recv ZSGSRD 35530
17-03-18 02:24:39.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:39.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:39.554 -07 000000606 INF: FPGA: Recv ZSGSRD 35527
17-03-18 02:24:39.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:24:39.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:39.564 -07 000000424 INF: FPGA: Recv ZSGSRD 35529
17-03-18 02:24:39.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:39.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:39.584 -07 000000502 INF: FPGA: Recv ZSGSRD 35532
17-03-18 02:24:39.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:24:39.594 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:39.594 -07 000000569 INF: FPGA: Recv ZPIEZORD 31375
17-03-18 02:24:39.604 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:39.604 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.618 V. Piezo Error = -9.2 V.
17-03-18 02:24:39.604 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35527 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35528 (-167.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35520 (-167.6 uncal um), Max = 35532 (-167.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:24:39.604 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35527, posNoise = 5, negNoise = 7
17-03-18 02:24:39.604 -07 000000610 INF: Z Motor: After move to -0.168542, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:39.604 -07 000000610 INF: Z Motor: MoveAbsStepped took 331 ms)
17-03-18 02:24:39.604 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:24:39.604 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:24:39.604 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:24:39.604 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:24:39.604 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:24:39.604 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:24:39.604 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:24:39.604 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:24:39.604 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:24:39.604 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:24:39.604 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:24:39.604 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:24:39.614 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:24:39.614 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:24:39.614 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:24:39.614 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:24:39.624 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:24:39.624 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:24:39.624 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:24:39.624 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:24:39.624 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36995 150\n [Camera]
17-03-18 02:24:39.824 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:24:40.214 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:24:40.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:24:40.224 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:40.224 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:40.224 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 02:24:40.224 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:24:40.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:24:40.224 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:40.224 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:40.224 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 02:24:40.414 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36995 780
17-03-18 02:24:40.564 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:24:40.614 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 02:24:40.614 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:24:40.614 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:40.624 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 02:24:40.624 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:24:40.624 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:40.624 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:24:40.624 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:24:40.624 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:24:40.634 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 02:24:40.754 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:24:40.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:24:40.754 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:40.754 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:40.754 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 02:24:40.754 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:24:40.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:24:40.754 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:40.754 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:40.754 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 02:24:40.944 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:24:40.944 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:24:40.944 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36995 150' command took 2 ms to send, 1313 ms to get response, and 1320 ms overall
17-03-18 02:24:40.944 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:24:40.944 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.168556336771476. ------
17-03-18 02:24:41.074 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17501 mm
17-03-18 02:24:41.074 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:24:41.074 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:24:41.074 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 02:24:41.074 -07 000000626 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-18 02:24:41.074 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:24:41.074 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38231, sync = True, waitForSettling = False)
17-03-18 02:24:41.074 -07 000000561 INF: Z Motor: Moving to -0.175010 mm, started at -0.168556 mm, distance = -6.45 um
17-03-18 02:24:41.084 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:24:41.084 -07 000000561 INF: FPGA: Xmit ZDACW 38231\n [Z Motor]
17-03-18 02:24:41.084 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:24:41.094 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:41.094 -07 000000561 INF: FPGA: 'ZDACW 38231' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:24:41.094 -07 000000591 INF: FPGA: Recv YRDPOS 141367
17-03-18 02:24:41.104 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:24:41.104 -07 000000626 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:41.104 -07 000000626 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:24:41.104 -07 000000626 INF: Y Motor: Moving 1353 steps-33
17-03-18 02:24:41.104 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:24:41.114 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:41.114 -07 000000591 INF: FPGA: Recv ZDACR 38231
17-03-18 02:24:41.124 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:24:41.124 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:24:41.124 -07 000000561 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 02:24:41.154 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 02:24:41.154 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:24:41.154 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:41.154 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 02:24:41.154 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:24:41.154 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:41.164 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:24:41.164 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:24:41.164 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 02:24:41.164 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:24:41.304 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:24:41.304 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 02:24:41.474 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:24:41.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:24:41.494 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 02:24:41.494 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:24:41.544 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:41.544 -07 000000606 INF: FPGA: Recv YRDPOS 143078
17-03-18 02:24:41.554 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:24:41.554 -07 000000626 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:41.554 -07 000000626 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 02:24:41.554 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.130 mm/sec
17-03-18 02:24:42.504 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:42.504 -07 000000561 INF: FPGA: Recv YRDPOS 143078
17-03-18 02:24:42.514 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:42.514 -07 000000626 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:42.534 -07 000000626 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:24:42.534 -07 000000626 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:24:42.534 -07 000000626 INF: Y Motor: Moved to 69.8623 after 1462 ms (table move)
17-03-18 02:24:42.544 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175010 mm (DAC = 38231)
17-03-18 02:24:42.544 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:42.544 -07 000000455 INF: FPGA: Recv ZSGSRD 36529
17-03-18 02:24:42.554 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:24:42.554 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:42.554 -07 000000501 INF: FPGA: Recv ZSGSRD 36533
17-03-18 02:24:42.564 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:42.564 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:42.564 -07 000000591 INF: FPGA: Recv ZSGSRD 36541
17-03-18 02:24:42.574 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:42.574 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:42.574 -07 000000430 INF: FPGA: Recv ZSGSRD 36534
17-03-18 02:24:42.584 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:42.584 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:42.584 -07 000000576 INF: FPGA: Recv ZSGSRD 36530
17-03-18 02:24:42.594 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:42.594 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:42.594 -07 000000579 INF: FPGA: Recv ZSGSRD 36532
17-03-18 02:24:42.604 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:42.604 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:42.604 -07 000000501 INF: FPGA: Recv ZSGSRD 36532
17-03-18 02:24:42.614 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:42.614 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:42.614 -07 000000629 INF: FPGA: Recv ZSGSRD 36534
17-03-18 02:24:42.624 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:42.624 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:42.624 -07 000000430 INF: FPGA: Recv ZSGSRD 36529
17-03-18 02:24:42.634 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:42.634 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:42.634 -07 000000561 INF: FPGA: Recv ZSGSRD 36533
17-03-18 02:24:42.644 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:42.644 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:42.644 -07 000000569 INF: FPGA: Recv ZPIEZORD 32728
17-03-18 02:24:42.654 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:42.654 -07 000000462 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.834 V. Piezo Error = -8.4 V.
17-03-18 02:24:42.654 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36533 (-174.1 uncal um), Error = 0.9 uncal um, Median = 36532 (-174.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36529 (-174.1 uncal um), Max = 36541 (-174.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:24:42.654 -07 000000462 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36533, posNoise = 8, negNoise = 4
17-03-18 02:24:42.654 -07 000000462 INF: Z Motor: After move to -0.175010, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:42.654 -07 000000462 INF: Z Motor: Settle wait time = 1465 ms, measure time = 108 ms (allowed 150 ms), total time = 1573 ms
17-03-18 02:24:42.654 -07 000000462 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:24:42.704 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 02:24:42.704 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:24:42.704 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:24:42.704 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:24:42.704 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:24:42.704 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:24:42.704 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:24:42.704 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:24:42.714 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:24:42.714 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:24:42.714 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:24:42.714 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:24:42.714 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:24:42.714 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 02:24:42.724 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:24:42.764 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:24:43.064 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:24:43.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:24:43.064 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:24:43.064 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:24:43.104 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:24:43.104 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 02:24:43.104 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:24:43.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:24:43.184 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:43.184 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:24:43.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:24:43.204 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:24:43.204 -07 000000424 INF: Autofocus start
17-03-18 02:24:43.204 -07 000000424 INF: MeasureProfile start
17-03-18 02:24:43.204 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:24:43.214 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:24:43.214 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:24:43.214 -07 000000424 INF: MeasureProfile done
17-03-18 02:24:43.214 -07 000000424 INF: X=-96  Z correction [um]=-0.5732754
17-03-18 02:24:43.214 -07 000000424 INF: Autofocus finished
17-03-18 02:24:43.414 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:24:43.414 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:24:43.414 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.175019094186088. ----------
17-03-18 02:24:43.414 -07 000000610 INF: Cycle	99	Tile	13	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:24:43.424 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36618, sync = True, waitForSettling = True)
17-03-18 02:24:43.424 -07 000000610 INF: Z Motor: Moving to -0.167626 mm, started at -0.175019 mm, distance = 7.39 um
17-03-18 02:24:43.424 -07 000000610 INF: FPGA: Xmit ZDACW 36618\n [Z Motor]
17-03-18 02:24:43.424 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:24:43.434 -07 000000610 INF: FPGA: 'ZDACW 36618' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:24:43.434 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:43.434 -07 000000424 INF: FPGA: Recv ZDACR 36618
17-03-18 02:24:43.444 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:43.444 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:24:43.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:43.594 -07 000000618 INF: FPGA: Recv ZSGSRD 35384
17-03-18 02:24:43.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:24:43.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:43.604 -07 000000590 INF: FPGA: Recv ZSGSRD 35383
17-03-18 02:24:43.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:43.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:43.614 -07 000000462 INF: FPGA: Recv ZSGSRD 35383
17-03-18 02:24:43.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:43.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:43.624 -07 000000591 INF: FPGA: Recv ZSGSRD 35383
17-03-18 02:24:43.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:43.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:43.634 -07 000000444 INF: FPGA: Recv ZSGSRD 35383
17-03-18 02:24:43.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:43.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:43.644 -07 000000501 INF: FPGA: Recv ZSGSRD 35388
17-03-18 02:24:43.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:43.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:43.654 -07 000000467 INF: FPGA: Recv ZSGSRD 35385
17-03-18 02:24:43.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:43.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:43.664 -07 000000606 INF: FPGA: Recv ZSGSRD 35384
17-03-18 02:24:43.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:43.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:43.684 -07 000000502 INF: FPGA: Recv ZSGSRD 35385
17-03-18 02:24:43.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:24:43.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:43.694 -07 000000629 INF: FPGA: Recv ZSGSRD 35391
17-03-18 02:24:43.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:43.704 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:43.704 -07 000000502 INF: FPGA: Recv ZPIEZORD 31192
17-03-18 02:24:43.714 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:43.714 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.588 V. Piezo Error = -9.2 V.
17-03-18 02:24:43.714 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35385 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35384 (-166.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35383 (-166.8 uncal um), Max = 35391 (-166.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 02:24:43.714 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35385, posNoise = 6, negNoise = 2
17-03-18 02:24:43.714 -07 000000610 INF: Z Motor: After move to -0.167626, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:43.714 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 02:24:43.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:24:43.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:24:43.714 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:24:43.714 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:24:43.714 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:24:43.714 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:24:43.714 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:24:43.714 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:24:43.714 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:24:43.714 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:24:43.714 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:24:43.714 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:24:43.724 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:24:43.724 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:24:43.724 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:24:43.724 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:24:43.734 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:24:43.734 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:24:43.734 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:24:43.734 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:24:43.734 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36795 150\n [Camera]
17-03-18 02:24:43.934 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:24:44.324 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:24:44.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:24:44.324 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:44.334 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:24:44.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:24:44.334 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:44.334 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:44.334 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:24:44.334 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:44.344 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1145266312, 0x0, 391868352) start.
17-03-18 02:24:44.524 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36795 780
17-03-18 02:24:44.674 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:24:44.724 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 02:24:44.724 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:24:44.724 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:44.734 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:24:44.734 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1145266312, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:24:44.734 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:24:44.734 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:44.734 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:24:44.734 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 02:24:44.744 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 02:24:44.864 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:24:44.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:24:44.864 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:44.864 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:44.864 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 02:24:44.864 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:24:44.864 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:24:44.864 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:44.864 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:44.864 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:24:44.904 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 3.975845,
17-03-18 02:24:45.054 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:24:45.054 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:24:45.054 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36795 150' command took 2 ms to send, 1313 ms to get response, and 1320 ms overall
17-03-18 02:24:45.054 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:24:45.054 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8623046875, Z-Position -0.167644098647346. ------
17-03-18 02:24:45.054 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:24:45.054 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17393 mm
17-03-18 02:24:45.054 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:24:45.174 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:24:45.174 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 117 ms overall
17-03-18 02:24:45.174 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:24:45.184 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 02:24:45.184 -07 000000424 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-18 02:24:45.184 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:45.184 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 37995, sync = True, waitForSettling = False)
17-03-18 02:24:45.184 -07 000000576 INF: Z Motor: Moving to -0.173930 mm, started at -0.167644 mm, distance = -6.29 um
17-03-18 02:24:45.184 -07 000000501 INF: FPGA: Recv YRDPOS 143079
17-03-18 02:24:45.194 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:45.194 -07 000000424 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:45.194 -07 000000576 INF: FPGA: Xmit ZDACW 37995\n [Z Motor]
17-03-18 02:24:45.194 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:24:45.194 -07 000000424 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:24:45.194 -07 000000424 INF: Y Motor: Moving 1344 steps-21
17-03-18 02:24:45.204 -07 000000576 INF: FPGA: 'ZDACW 37995' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:24:45.204 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:24:45.214 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:45.214 -07 000000626 INF: FPGA: Recv ZDACR 37995
17-03-18 02:24:45.224 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:24:45.224 -07 000000576 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 02:24:45.254 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 02:24:45.254 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:24:45.254 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:45.264 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:24:45.264 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:24:45.264 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:24:45.264 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:45.264 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:24:45.264 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:24:45.264 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:24:45.374 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:24:45.374 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 202 ms overall
17-03-18 02:24:45.574 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 02:24:45.574 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 02:24:45.624 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:45.624 -07 000000430 INF: FPGA: Recv YRDPOS 144768
17-03-18 02:24:45.634 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:24:45.634 -07 000000424 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:45.634 -07 000000424 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 02:24:45.634 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.840 mm, average velocity = 2.183 mm/sec
17-03-18 02:24:46.474 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:24:46.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:24:46.584 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:46.584 -07 000000618 INF: FPGA: Recv YRDPOS 144769
17-03-18 02:24:46.594 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:24:46.594 -07 000000424 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:46.614 -07 000000424 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:24:46.614 -07 000000424 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:24:46.614 -07 000000424 INF: Y Motor: Moved to 70.6880 after 1438 ms (table move)
17-03-18 02:24:46.624 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173930 mm (DAC = 37995)
17-03-18 02:24:46.624 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:46.624 -07 000000579 INF: FPGA: Recv ZSGSRD 36362
17-03-18 02:24:46.634 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:24:46.634 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:46.634 -07 000000502 INF: FPGA: Recv ZSGSRD 36368
17-03-18 02:24:46.644 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:46.644 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:46.644 -07 000000629 INF: FPGA: Recv ZSGSRD 36367
17-03-18 02:24:46.654 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:46.654 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:46.654 -07 000000626 INF: FPGA: Recv ZSGSRD 36365
17-03-18 02:24:46.664 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:46.664 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:46.664 -07 000000606 INF: FPGA: Recv ZSGSRD 36364
17-03-18 02:24:46.674 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:46.674 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:46.674 -07 000000561 INF: FPGA: Recv ZSGSRD 36357
17-03-18 02:24:46.684 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:46.684 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:46.684 -07 000000444 INF: FPGA: Recv ZSGSRD 36371
17-03-18 02:24:46.694 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:46.694 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:46.694 -07 000000512 INF: FPGA: Recv ZSGSRD 36366
17-03-18 02:24:46.704 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:46.704 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:46.704 -07 000000626 INF: FPGA: Recv ZSGSRD 36366
17-03-18 02:24:46.714 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:46.714 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:46.714 -07 000000591 INF: FPGA: Recv ZSGSRD 36366
17-03-18 02:24:46.724 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:46.724 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:46.724 -07 000000629 INF: FPGA: Recv ZPIEZORD 32498
17-03-18 02:24:46.734 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:46.734 -07 000000590 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.798 V. Piezo Error = -8.6 V.
17-03-18 02:24:46.734 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36365 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36366 (-173.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36357 (-173.0 uncal um), Max = 36371 (-173.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:24:46.734 -07 000000590 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36365, posNoise = 6, negNoise = 8
17-03-18 02:24:46.734 -07 000000590 INF: Z Motor: After move to -0.173930, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:46.734 -07 000000590 INF: Z Motor: Settle wait time = 1441 ms, measure time = 108 ms (allowed 150 ms), total time = 1549 ms
17-03-18 02:24:46.734 -07 000000590 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:24:46.784 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1721 ms
17-03-18 02:24:46.784 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:24:46.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:24:46.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:24:46.784 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:24:46.784 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:24:46.784 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:24:46.784 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:24:46.784 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 02:24:46.784 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:24:46.794 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:24:46.794 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:24:46.794 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:24:46.794 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:24:46.804 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:24:46.844 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:24:47.144 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:24:47.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:24:47.144 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:24:47.144 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:24:47.184 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:24:47.184 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 02:24:47.184 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:24:47.264 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:24:47.264 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:47.264 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:24:47.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:24:47.284 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:24:47.284 -07 000000502 INF: Autofocus start
17-03-18 02:24:47.284 -07 000000502 INF: MeasureProfile start
17-03-18 02:24:47.284 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:24:47.294 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:24:47.294 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:24:47.304 -07 000000502 INF: MeasureProfile done
17-03-18 02:24:47.304 -07 000000502 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:24:47.304 -07 000000502 INF: Autofocus finished
17-03-18 02:24:47.494 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:24:47.494 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:24:47.494 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.173939826546272. ----------
17-03-18 02:24:47.504 -07 000000610 INF: Cycle	99	Tile	14	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:24:47.504 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36510, sync = True, waitForSettling = True)
17-03-18 02:24:47.504 -07 000000610 INF: Z Motor: Moving to -0.167132 mm, started at -0.173940 mm, distance = 6.81 um
17-03-18 02:24:47.504 -07 000000610 INF: FPGA: Xmit ZDACW 36510\n [Z Motor]
17-03-18 02:24:47.504 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 02:24:47.514 -07 000000610 INF: FPGA: 'ZDACW 36510' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:24:47.514 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:47.514 -07 000000455 INF: FPGA: Recv ZDACR 36510
17-03-18 02:24:47.524 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:47.524 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:24:47.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:47.674 -07 000000561 INF: FPGA: Recv ZSGSRD 35307
17-03-18 02:24:47.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:24:47.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:47.684 -07 000000501 INF: FPGA: Recv ZSGSRD 35309
17-03-18 02:24:47.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:47.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:47.694 -07 000000461 INF: FPGA: Recv ZSGSRD 35316
17-03-18 02:24:47.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:47.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:47.704 -07 000000606 INF: FPGA: Recv ZSGSRD 35303
17-03-18 02:24:47.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:47.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:47.714 -07 000000467 INF: FPGA: Recv ZSGSRD 35303
17-03-18 02:24:47.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:47.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:47.724 -07 000000512 INF: FPGA: Recv ZSGSRD 35305
17-03-18 02:24:47.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:47.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:47.734 -07 000000501 INF: FPGA: Recv ZSGSRD 35309
17-03-18 02:24:47.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:47.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:47.744 -07 000000462 INF: FPGA: Recv ZSGSRD 35308
17-03-18 02:24:47.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:47.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:47.754 -07 000000618 INF: FPGA: Recv ZSGSRD 35306
17-03-18 02:24:47.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:47.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:47.764 -07 000000626 INF: FPGA: Recv ZSGSRD 35308
17-03-18 02:24:47.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:47.774 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:47.774 -07 000000424 INF: FPGA: Recv ZPIEZORD 31068
17-03-18 02:24:47.784 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:47.784 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.571 V. Piezo Error = -9.3 V.
17-03-18 02:24:47.784 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35307 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35308 (-166.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35303 (-166.2 uncal um), Max = 35316 (-166.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:24:47.784 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35307, posNoise = 9, negNoise = 4
17-03-18 02:24:47.784 -07 000000610 INF: Z Motor: After move to -0.167132, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:47.784 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 02:24:47.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:24:47.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:24:47.784 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:24:47.784 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:24:47.784 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:24:47.784 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:24:47.784 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:24:47.784 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:24:47.784 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:24:47.784 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:24:47.784 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:24:47.784 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:24:47.794 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:24:47.794 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:24:47.794 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:24:47.794 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:24:47.804 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:24:47.804 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:24:47.804 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 02:24:47.804 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:24:47.804 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36686 150\n [Camera]
17-03-18 02:24:48.004 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 02:24:48.404 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:24:48.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:24:48.404 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:48.404 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:24:48.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:24:48.404 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:48.414 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:48.414 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 02:24:48.414 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:48.414 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 02:24:48.594 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36686 780
17-03-18 02:24:48.744 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:24:48.804 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:24:48.804 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:24:48.804 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:48.814 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 02:24:48.814 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:24:48.814 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:48.814 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:24:48.814 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:24:48.814 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:24:48.824 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 02:24:48.934 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:24:48.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:24:48.934 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:48.934 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:24:48.934 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:48.934 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:24:48.934 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:24:48.934 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:48.934 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:48.934 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) start.
17-03-18 02:24:49.124 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:24:49.124 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:24:49.124 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36686 150' command took 2 ms to send, 1316 ms to get response, and 1320 ms overall
17-03-18 02:24:49.124 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:24:49.124 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.167143010100289. ------
17-03-18 02:24:49.134 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:24:49.134 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17392 mm
17-03-18 02:24:49.134 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:24:49.134 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:24:49.134 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 02:24:49.134 -07 000000561 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 02:24:49.134 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 37993, sync = True, waitForSettling = False)
17-03-18 02:24:49.134 -07 000000462 INF: Z Motor: Moving to -0.173921 mm, started at -0.167143 mm, distance = -6.78 um
17-03-18 02:24:49.144 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:49.144 -07 000000462 INF: FPGA: Xmit ZDACW 37993\n [Z Motor]
17-03-18 02:24:49.144 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:24:49.154 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:49.154 -07 000000462 INF: FPGA: 'ZDACW 37993' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:24:49.154 -07 000000618 INF: FPGA: Recv YRDPOS 144769
17-03-18 02:24:49.164 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:24:49.164 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:24:49.164 -07 000000561 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:49.164 -07 000000561 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:24:49.164 -07 000000561 INF: Y Motor: Moving 1351 steps-31
17-03-18 02:24:49.174 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:49.174 -07 000000618 INF: FPGA: Recv ZDACR 37993
17-03-18 02:24:49.184 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:24:49.184 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:24:49.184 -07 000000462 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 02:24:49.334 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:24:49.334 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:24:49.334 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:49.334 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:24:49.344 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:24:49.344 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:49.344 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:24:49.344 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:24:49.344 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:24:49.354 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:24:49.364 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:24:49.364 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 225 ms overall
17-03-18 02:24:49.554 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 02:24:49.554 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:24:49.604 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:49.604 -07 000000502 INF: FPGA: Recv YRDPOS 146469
17-03-18 02:24:49.614 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:24:49.614 -07 000000561 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:49.614 -07 000000561 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 02:24:49.614 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-18 02:24:50.264 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 3.985358,
17-03-18 02:24:50.564 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:50.564 -07 000000626 INF: FPGA: Recv YRDPOS 146469
17-03-18 02:24:50.574 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:50.574 -07 000000561 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:50.594 -07 000000561 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:24:50.594 -07 000000561 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:24:50.594 -07 000000561 INF: Y Motor: Moved to 71.5181 after 1461 ms (table move)
17-03-18 02:24:50.604 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173921 mm (DAC = 37993)
17-03-18 02:24:50.604 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:50.604 -07 000000462 INF: FPGA: Recv ZSGSRD 36360
17-03-18 02:24:50.614 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:24:50.614 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:50.614 -07 000000569 INF: FPGA: Recv ZSGSRD 36367
17-03-18 02:24:50.624 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:50.624 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:50.624 -07 000000579 INF: FPGA: Recv ZSGSRD 36365
17-03-18 02:24:50.634 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:50.634 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:50.634 -07 000000512 INF: FPGA: Recv ZSGSRD 36365
17-03-18 02:24:50.644 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:50.644 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:50.644 -07 000000430 INF: FPGA: Recv ZSGSRD 36361
17-03-18 02:24:50.654 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:50.654 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:50.654 -07 000000455 INF: FPGA: Recv ZSGSRD 36360
17-03-18 02:24:50.664 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:50.664 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:50.664 -07 000000462 INF: FPGA: Recv ZSGSRD 36367
17-03-18 02:24:50.674 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:50.674 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:50.674 -07 000000444 INF: FPGA: Recv ZSGSRD 36359
17-03-18 02:24:50.684 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:50.684 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:50.684 -07 000000606 INF: FPGA: Recv ZSGSRD 36362
17-03-18 02:24:50.694 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:50.694 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:50.694 -07 000000569 INF: FPGA: Recv ZSGSRD 36368
17-03-18 02:24:50.704 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:50.704 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:50.704 -07 000000455 INF: FPGA: Recv ZPIEZORD 32460
17-03-18 02:24:50.714 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:50.714 -07 000000629 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.797 V. Piezo Error = -8.6 V.
17-03-18 02:24:50.714 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36363 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36364 (-173.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36359 (-173.0 uncal um), Max = 36368 (-173.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:24:50.714 -07 000000629 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36363, posNoise = 5, negNoise = 4
17-03-18 02:24:50.714 -07 000000629 INF: Z Motor: After move to -0.173921, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:50.714 -07 000000629 INF: Z Motor: Settle wait time = 1464 ms, measure time = 108 ms (allowed 150 ms), total time = 1572 ms
17-03-18 02:24:50.714 -07 000000629 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:24:50.764 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-18 02:24:50.764 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:24:50.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:24:50.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:24:50.764 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:24:50.764 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:24:50.764 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:24:50.764 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:24:50.764 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:24:50.764 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:24:50.774 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:24:50.774 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:24:50.774 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:24:50.774 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:24:50.784 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:24:50.824 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:24:51.124 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:24:51.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:24:51.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:24:51.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111624864, 0x0, 559484976) start.
17-03-18 02:24:51.164 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:24:51.164 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 02:24:51.164 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:24:51.244 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111624864, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:24:51.244 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:51.244 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:24:51.244 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:24:51.264 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:24:51.264 -07 000000629 INF: Autofocus start
17-03-18 02:24:51.264 -07 000000629 INF: MeasureProfile start
17-03-18 02:24:51.264 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:24:51.274 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:24:51.274 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:24:51.284 -07 000000629 INF: MeasureProfile done
17-03-18 02:24:51.284 -07 000000629 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:24:51.284 -07 000000629 INF: Autofocus finished
17-03-18 02:24:51.474 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:24:51.474 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:24:51.474 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:24:51.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:24:51.474 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.173926978121989. ----------
17-03-18 02:24:51.474 -07 000000610 INF: Cycle	99	Tile	15	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:24:51.484 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36490, sync = True, waitForSettling = True)
17-03-18 02:24:51.484 -07 000000610 INF: Z Motor: Moving to -0.167041 mm, started at -0.173927 mm, distance = 6.89 um
17-03-18 02:24:51.484 -07 000000610 INF: FPGA: Xmit ZDACW 36490\n [Z Motor]
17-03-18 02:24:51.484 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:24:51.494 -07 000000610 INF: FPGA: 'ZDACW 36490' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:24:51.494 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:51.494 -07 000000590 INF: FPGA: Recv ZDACR 36490
17-03-18 02:24:51.504 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:51.504 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:24:51.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:51.654 -07 000000569 INF: FPGA: Recv ZSGSRD 35298
17-03-18 02:24:51.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:24:51.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:51.664 -07 000000424 INF: FPGA: Recv ZSGSRD 35289
17-03-18 02:24:51.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:51.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:51.674 -07 000000430 INF: FPGA: Recv ZSGSRD 35287
17-03-18 02:24:51.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:51.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:51.684 -07 000000501 INF: FPGA: Recv ZSGSRD 35289
17-03-18 02:24:51.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:51.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:51.694 -07 000000576 INF: FPGA: Recv ZSGSRD 35294
17-03-18 02:24:51.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:24:51.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:51.704 -07 000000501 INF: FPGA: Recv ZSGSRD 35291
17-03-18 02:24:51.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:51.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:51.714 -07 000000576 INF: FPGA: Recv ZSGSRD 35292
17-03-18 02:24:51.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:51.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:51.724 -07 000000579 INF: FPGA: Recv ZSGSRD 35293
17-03-18 02:24:51.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:51.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:51.734 -07 000000424 INF: FPGA: Recv ZSGSRD 35293
17-03-18 02:24:51.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:51.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:51.744 -07 000000629 INF: FPGA: Recv ZSGSRD 35290
17-03-18 02:24:51.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:51.754 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:51.754 -07 000000424 INF: FPGA: Recv ZPIEZORD 31072
17-03-18 02:24:51.764 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:51.764 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.568 V. Piezo Error = -9.3 V.
17-03-18 02:24:51.764 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35292 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35292 (-166.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35287 (-166.1 uncal um), Max = 35298 (-166.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:24:51.764 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35292, posNoise = 6, negNoise = 5
17-03-18 02:24:51.764 -07 000000610 INF: Z Motor: After move to -0.167041, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:51.764 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:24:51.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:24:51.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:24:51.764 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:24:51.764 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:24:51.764 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:24:51.764 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:24:51.774 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:24:51.774 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:24:51.774 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:24:51.774 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:24:51.774 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:24:51.774 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:24:51.774 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:24:51.774 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:24:51.774 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:24:51.774 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:24:51.784 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:24:51.784 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 02:24:51.784 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:24:51.784 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 02:24:51.784 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36667 150\n [Camera]
17-03-18 02:24:51.984 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:24:52.384 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:24:52.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:24:52.384 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:52.384 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:52.384 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 02:24:52.384 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:24:52.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:24:52.384 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:52.384 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:52.384 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 02:24:52.574 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36667 780
17-03-18 02:24:52.724 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:24:52.774 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:24:52.774 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:24:52.774 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:52.774 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 02:24:52.774 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:24:52.774 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:52.784 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:24:52.784 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:24:52.784 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:24:52.784 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 02:24:52.914 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:24:52.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:24:52.914 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:52.914 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:52.914 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:24:52.914 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:24:52.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:24:52.914 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:52.914 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:52.914 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:24:53.104 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-18 02:24:53.104 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:24:53.104 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36667 150' command took 2 ms to send, 1317 ms to get response, and 1322 ms overall
17-03-18 02:24:53.104 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:24:53.104 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51806640625, Z-Position -0.167046646918163. ------
17-03-18 02:24:53.114 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:24:53.114 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17343 mm
17-03-18 02:24:53.114 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:24:53.114 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 37885, sync = True, waitForSettling = False)
17-03-18 02:24:53.114 -07 000000444 INF: Z Motor: Moving to -0.173426 mm, started at -0.167047 mm, distance = -6.38 um
17-03-18 02:24:53.114 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 02:24:53.114 -07 000000591 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 02:24:53.244 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:24:53.244 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 130 ms overall
17-03-18 02:24:53.244 -07 000000444 INF: FPGA: Xmit ZDACW 37885\n [Z Motor]
17-03-18 02:24:53.244 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 02:24:53.254 -07 000000444 INF: FPGA: 'ZDACW 37885' command took 1 ms to send, 0 ms to get response, and 133 ms overall
17-03-18 02:24:53.254 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:53.254 -07 000000455 INF: FPGA: Recv ZDACR 37885
17-03-18 02:24:53.264 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:53.264 -07 000000444 INF: Z Motor: MoveAbsStepped took 144 ms (did NOT wait for settling yet))
17-03-18 02:24:53.264 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:53.264 -07 000000629 INF: FPGA: Recv YRDPOS 146470
17-03-18 02:24:53.274 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:24:53.274 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:24:53.274 -07 000000591 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:53.274 -07 000000591 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:24:53.274 -07 000000591 INF: Y Motor: Moving 1350 steps-30
17-03-18 02:24:53.284 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:24:53.324 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 407 ms.
17-03-18 02:24:53.324 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:24:53.324 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:53.324 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 02:24:53.324 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 02:24:53.324 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:53.324 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:24:53.324 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:24:53.324 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 02:24:53.334 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 02:24:53.474 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:24:53.474 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 228 ms overall
17-03-18 02:24:53.654 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 02:24:53.654 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 02:24:53.704 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:53.704 -07 000000606 INF: FPGA: Recv YRDPOS 148171
17-03-18 02:24:53.714 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:24:53.714 -07 000000591 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:53.714 -07 000000591 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:24:53.714 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.845 mm, average velocity = 2.194 mm/sec
17-03-18 02:24:54.664 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:54.664 -07 000000501 INF: FPGA: Recv YRDPOS 148171
17-03-18 02:24:54.674 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:24:54.674 -07 000000591 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:54.694 -07 000000591 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:24:54.704 -07 000000591 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:24:54.704 -07 000000591 INF: Y Motor: Moved to 72.3491 after 1583 ms (table move)
17-03-18 02:24:54.704 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173426 mm (DAC = 37885)
17-03-18 02:24:54.724 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:54.724 -07 000000591 INF: FPGA: Recv ZSGSRD 36289
17-03-18 02:24:54.734 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:24:54.734 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:54.734 -07 000000467 INF: FPGA: Recv ZSGSRD 36282
17-03-18 02:24:54.744 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:54.754 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:54.754 -07 000000461 INF: FPGA: Recv ZSGSRD 36284
17-03-18 02:24:54.764 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:24:54.764 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:54.764 -07 000000590 INF: FPGA: Recv ZSGSRD 36287
17-03-18 02:24:54.774 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:54.784 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:54.784 -07 000000501 INF: FPGA: Recv ZSGSRD 36285
17-03-18 02:24:54.794 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:24:54.794 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:54.794 -07 000000462 INF: FPGA: Recv ZSGSRD 36291
17-03-18 02:24:54.804 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:54.814 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:54.814 -07 000000501 INF: FPGA: Recv ZSGSRD 36288
17-03-18 02:24:54.824 -07 000000569 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:24:54.824 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:54.824 -07 000000424 INF: FPGA: Recv ZSGSRD 36287
17-03-18 02:24:54.834 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:54.834 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:54.834 -07 000000467 INF: FPGA: Recv ZSGSRD 36281
17-03-18 02:24:54.844 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:54.844 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:54.844 -07 000000629 INF: FPGA: Recv ZSGSRD 36287
17-03-18 02:24:54.854 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:54.854 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:54.854 -07 000000591 INF: FPGA: Recv ZPIEZORD 32371
17-03-18 02:24:54.864 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:54.864 -07 000000569 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.781 V. Piezo Error = -8.7 V.
17-03-18 02:24:54.864 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36286 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36287 (-172.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36281 (-172.5 uncal um), Max = 36291 (-172.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:24:54.864 -07 000000569 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36286, posNoise = 5, negNoise = 5
17-03-18 02:24:54.864 -07 000000569 INF: Z Motor: After move to -0.173426, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:54.864 -07 000000569 INF: Z Motor: Settle wait time = 1587 ms, measure time = 157 ms (allowed 150 ms), total time = 1744 ms
17-03-18 02:24:54.864 -07 000000569 INF: Z Motor: Warning: Actual position measuring time = 157 ms, longer than max expected time of 150 ms
17-03-18 02:24:54.864 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1747 ms
17-03-18 02:24:54.864 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:24:54.864 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:24:54.864 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:24:54.864 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:24:54.864 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:24:54.864 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:24:54.864 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:24:54.864 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:24:54.864 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:24:54.874 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:24:54.874 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:24:54.874 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:24:54.874 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:24:54.884 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:24:54.924 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:24:55.224 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:24:55.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:24:55.224 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:24:55.224 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:24:55.264 -07 000000561 INF: FPGA: Recv @CAMSNAP 382
17-03-18 02:24:55.264 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 02:24:55.264 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 386 ms overall
17-03-18 02:24:55.344 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:24:55.344 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:55.344 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:24:55.344 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:24:55.364 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:24:55.364 -07 000000462 INF: Autofocus start
17-03-18 02:24:55.364 -07 000000462 INF: MeasureProfile start
17-03-18 02:24:55.364 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:24:55.374 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:24:55.374 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:24:55.374 -07 000000462 INF: MeasureProfile done
17-03-18 02:24:55.374 -07 000000462 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:24:55.374 -07 000000462 INF: Autofocus finished
17-03-18 02:24:55.574 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:24:55.574 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:24:55.574 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173432313787073. ----------
17-03-18 02:24:55.574 -07 000000610 INF: Cycle	99	Tile	16	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:24:55.584 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36400, sync = True, waitForSettling = True)
17-03-18 02:24:55.584 -07 000000610 INF: Z Motor: Moving to -0.166629 mm, started at -0.173432 mm, distance = 6.80 um
17-03-18 02:24:55.584 -07 000000610 INF: FPGA: Xmit ZDACW 36400\n [Z Motor]
17-03-18 02:24:55.584 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:24:55.594 -07 000000610 INF: FPGA: 'ZDACW 36400' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:24:55.594 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:55.594 -07 000000461 INF: FPGA: Recv ZDACR 36400
17-03-18 02:24:55.604 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:55.604 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:24:55.624 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 3.99219,
17-03-18 02:24:55.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:55.754 -07 000000462 INF: FPGA: Recv ZSGSRD 35227
17-03-18 02:24:55.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:24:55.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:55.764 -07 000000591 INF: FPGA: Recv ZSGSRD 35225
17-03-18 02:24:55.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:55.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:55.774 -07 000000461 INF: FPGA: Recv ZSGSRD 35233
17-03-18 02:24:55.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:55.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:55.784 -07 000000467 INF: FPGA: Recv ZSGSRD 35227
17-03-18 02:24:55.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:55.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:55.794 -07 000000590 INF: FPGA: Recv ZSGSRD 35228
17-03-18 02:24:55.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:55.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:55.804 -07 000000462 INF: FPGA: Recv ZSGSRD 35225
17-03-18 02:24:55.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:55.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:55.814 -07 000000512 INF: FPGA: Recv ZSGSRD 35235
17-03-18 02:24:55.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:55.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:55.824 -07 000000561 INF: FPGA: Recv ZSGSRD 35229
17-03-18 02:24:55.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:55.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:55.834 -07 000000444 INF: FPGA: Recv ZSGSRD 35225
17-03-18 02:24:55.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:55.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:55.844 -07 000000618 INF: FPGA: Recv ZSGSRD 35234
17-03-18 02:24:55.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:55.854 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:55.854 -07 000000579 INF: FPGA: Recv ZPIEZORD 30969
17-03-18 02:24:55.864 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:55.864 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.554 V. Piezo Error = -9.4 V.
17-03-18 02:24:55.864 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35229 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35228 (-165.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35225 (-165.7 uncal um), Max = 35235 (-165.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:24:55.864 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35229, posNoise = 6, negNoise = 4
17-03-18 02:24:55.864 -07 000000610 INF: Z Motor: After move to -0.166629, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:55.864 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:24:55.864 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:24:55.864 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:24:55.864 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:24:55.864 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:24:55.864 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:24:55.864 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:24:55.864 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:24:55.864 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:24:55.864 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:24:55.864 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:24:55.864 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:24:55.864 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:24:55.874 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:24:55.874 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:24:55.874 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:24:55.874 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:24:55.884 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:24:55.884 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:24:55.884 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:24:55.884 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:24:55.884 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36577 150\n [Camera]
17-03-18 02:24:56.084 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:24:56.474 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:24:56.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:24:56.474 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:24:56.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:24:56.484 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:56.484 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:24:56.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:24:56.484 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:56.484 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:56.484 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:24:56.484 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:56.484 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1145266312, 0x0, 391868352) start.
17-03-18 02:24:56.674 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36577 780
17-03-18 02:24:56.824 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:24:56.884 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 02:24:56.884 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:24:56.884 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:56.884 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1145266312, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:24:56.884 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:24:56.884 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:56.884 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:24:56.884 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:24:56.884 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:24:56.894 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:24:57.014 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:24:57.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:24:57.014 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:24:57.014 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:24:57.014 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:24:57.014 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:24:57.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:24:57.014 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:24:57.014 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:24:57.014 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:24:57.204 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:24:57.204 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:24:57.204 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36577 150' command took 2 ms to send, 1314 ms to get response, and 1320 ms overall
17-03-18 02:24:57.204 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:24:57.204 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.166641921553232. ------
17-03-18 02:24:57.204 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:24:57.204 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17319 mm
17-03-18 02:24:57.204 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:24:57.214 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:24:57.214 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 02:24:57.214 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 02:24:57.334 -07 000000618 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 02:24:57.334 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37833, sync = True, waitForSettling = False)
17-03-18 02:24:57.334 -07 000000502 INF: Z Motor: Moving to -0.173188 mm, started at -0.166642 mm, distance = -6.55 um
17-03-18 02:24:57.344 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:24:57.354 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:57.354 -07 000000467 INF: FPGA: Recv YRDPOS 148171
17-03-18 02:24:57.364 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 02:24:57.364 -07 000000618 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:57.364 -07 000000618 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:24:57.364 -07 000000618 INF: Y Motor: Moving 1350 steps-28
17-03-18 02:24:57.364 -07 000000502 INF: FPGA: Xmit ZDACW 37833\n [Z Motor]
17-03-18 02:24:57.364 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:24:57.374 -07 000000502 INF: FPGA: 'ZDACW 37833' command took 1 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 02:24:57.374 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:57.374 -07 000000579 INF: FPGA: Recv ZDACR 37833
17-03-18 02:24:57.384 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:24:57.384 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:57.384 -07 000000502 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 02:24:57.404 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 02:24:57.404 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:24:57.404 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:57.404 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:24:57.404 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:24:57.414 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:24:57.414 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:57.414 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:24:57.414 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:24:57.414 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:24:57.544 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:24:57.544 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 02:24:57.754 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 02:24:57.754 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:24:57.804 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:57.814 -07 000000590 INF: FPGA: Recv YRDPOS 149863
17-03-18 02:24:57.814 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:24:57.814 -07 000000618 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:57.814 -07 000000618 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 02:24:57.814 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.125 mm/sec
17-03-18 02:24:58.764 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:24:58.764 -07 000000606 INF: FPGA: Recv YRDPOS 149864
17-03-18 02:24:58.774 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:58.774 -07 000000618 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:24:58.794 -07 000000618 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:24:58.794 -07 000000618 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:24:58.794 -07 000000618 INF: Y Motor: Moved to 73.1758 after 1459 ms (table move)
17-03-18 02:24:58.804 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173188 mm (DAC = 37833)
17-03-18 02:24:58.804 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:58.804 -07 000000626 INF: FPGA: Recv ZSGSRD 36255
17-03-18 02:24:58.814 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:24:58.814 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:58.814 -07 000000462 INF: FPGA: Recv ZSGSRD 36254
17-03-18 02:24:58.824 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:58.824 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:58.824 -07 000000561 INF: FPGA: Recv ZSGSRD 36254
17-03-18 02:24:58.834 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:58.834 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:58.834 -07 000000606 INF: FPGA: Recv ZSGSRD 36252
17-03-18 02:24:58.844 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:58.844 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:58.844 -07 000000444 INF: FPGA: Recv ZSGSRD 36253
17-03-18 02:24:58.854 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:58.854 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:58.854 -07 000000626 INF: FPGA: Recv ZSGSRD 36249
17-03-18 02:24:58.864 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:58.864 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:58.864 -07 000000590 INF: FPGA: Recv ZSGSRD 36245
17-03-18 02:24:58.874 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:58.874 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:58.874 -07 000000561 INF: FPGA: Recv ZSGSRD 36244
17-03-18 02:24:58.884 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:58.884 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:58.884 -07 000000606 INF: FPGA: Recv ZSGSRD 36250
17-03-18 02:24:58.894 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:58.894 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:58.894 -07 000000444 INF: FPGA: Recv ZSGSRD 36253
17-03-18 02:24:58.904 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:58.904 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:58.904 -07 000000626 INF: FPGA: Recv ZPIEZORD 32371
17-03-18 02:24:58.914 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:58.914 -07 000000501 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.773 V. Piezo Error = -8.6 V.
17-03-18 02:24:58.914 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36251 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36252 (-172.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36244 (-172.3 uncal um), Max = 36255 (-172.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:24:58.914 -07 000000501 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36251, posNoise = 4, negNoise = 7
17-03-18 02:24:58.914 -07 000000501 INF: Z Motor: After move to -0.173188, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:58.914 -07 000000501 INF: Z Motor: Settle wait time = 1463 ms, measure time = 107 ms (allowed 150 ms), total time = 1570 ms
17-03-18 02:24:58.914 -07 000000501 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:24:58.964 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1750 ms
17-03-18 02:24:58.964 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:24:58.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:24:58.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:24:58.964 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:24:58.964 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:24:58.964 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:24:58.964 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:24:58.964 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:24:58.964 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:24:58.974 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:24:58.974 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:24:58.974 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:24:58.974 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:24:58.984 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:24:59.024 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:24:59.324 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:24:59.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:24:59.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:24:59.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:24:59.364 -07 000000430 INF: FPGA: Recv @CAMSNAP 382
17-03-18 02:24:59.364 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 02:24:59.364 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 386 ms overall
17-03-18 02:24:59.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:24:59.444 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:24:59.444 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:24:59.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:24:59.464 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:24:59.464 -07 000000512 INF: Autofocus start
17-03-18 02:24:59.464 -07 000000512 INF: MeasureProfile start
17-03-18 02:24:59.464 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:24:59.474 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:24:59.474 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:24:59.474 -07 000000512 INF: MeasureProfile done
17-03-18 02:24:59.474 -07 000000512 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:24:59.474 -07 000000512 INF: Autofocus finished
17-03-18 02:24:59.674 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:24:59.674 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:24:59.674 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.173207466362111. ----------
17-03-18 02:24:59.674 -07 000000610 INF: Cycle	99	Tile	17	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:24:59.684 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36348, sync = True, waitForSettling = True)
17-03-18 02:24:59.684 -07 000000610 INF: Z Motor: Moving to -0.166390 mm, started at -0.173207 mm, distance = 6.82 um
17-03-18 02:24:59.684 -07 000000610 INF: FPGA: Xmit ZDACW 36348\n [Z Motor]
17-03-18 02:24:59.684 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:24:59.694 -07 000000610 INF: FPGA: 'ZDACW 36348' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:24:59.694 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:24:59.694 -07 000000618 INF: FPGA: Recv ZDACR 36348
17-03-18 02:24:59.704 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:59.704 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:24:59.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:59.854 -07 000000591 INF: FPGA: Recv ZSGSRD 35193
17-03-18 02:24:59.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:59.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:59.864 -07 000000590 INF: FPGA: Recv ZSGSRD 35196
17-03-18 02:24:59.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:59.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:59.874 -07 000000501 INF: FPGA: Recv ZSGSRD 35195
17-03-18 02:24:59.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:59.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:59.884 -07 000000579 INF: FPGA: Recv ZSGSRD 35189
17-03-18 02:24:59.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:59.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:59.894 -07 000000444 INF: FPGA: Recv ZSGSRD 35188
17-03-18 02:24:59.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:59.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:59.904 -07 000000569 INF: FPGA: Recv ZSGSRD 35200
17-03-18 02:24:59.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:59.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:59.914 -07 000000462 INF: FPGA: Recv ZSGSRD 35190
17-03-18 02:24:59.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:59.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:59.924 -07 000000561 INF: FPGA: Recv ZSGSRD 35188
17-03-18 02:24:59.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:59.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:59.934 -07 000000455 INF: FPGA: Recv ZSGSRD 35186
17-03-18 02:24:59.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:59.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:24:59.944 -07 000000467 INF: FPGA: Recv ZSGSRD 35195
17-03-18 02:24:59.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:59.954 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:24:59.954 -07 000000501 INF: FPGA: Recv ZPIEZORD 30957
17-03-18 02:24:59.964 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:24:59.964 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.546 V. Piezo Error = -9.3 V.
17-03-18 02:24:59.964 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35192 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35192 (-165.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35186 (-165.5 uncal um), Max = 35200 (-165.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:24:59.964 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35192, posNoise = 8, negNoise = 6
17-03-18 02:24:59.964 -07 000000610 INF: Z Motor: After move to -0.166390, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:24:59.964 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:24:59.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:24:59.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:24:59.964 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:24:59.964 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:24:59.974 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:24:59.974 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:24:59.974 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:24:59.974 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:24:59.974 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:24:59.974 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:24:59.974 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:24:59.974 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:24:59.974 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:24:59.974 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:24:59.974 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:24:59.974 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:24:59.994 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 02:24:59.994 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 02:24:59.994 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:24:59.994 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 02:24:59.994 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36524 150\n [Camera]
17-03-18 02:25:00.194 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:25:00.594 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:25:00.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:25:00.594 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:25:00.594 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:25:00.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:25:00.594 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:25:00.604 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:25:00.604 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:25:00.604 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:25:00.604 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:25:00.784 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36524 780
17-03-18 02:25:00.934 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:25:00.984 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 4.005817,
17-03-18 02:25:00.984 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:25:00.984 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:25:00.984 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:00.984 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:25:00.984 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 02:25:00.984 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:25:00.984 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:00.994 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:25:00.994 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:25:00.994 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:25:01.124 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:25:01.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:25:01.124 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:25:01.134 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:25:01.134 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:25:01.134 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:25:01.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:25:01.134 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:25:01.134 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:25:01.134 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) start.
17-03-18 02:25:01.314 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:25:01.314 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:25:01.314 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36524 150' command took 2 ms to send, 1309 ms to get response, and 1320 ms overall
17-03-18 02:25:01.324 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:25:01.324 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.166404225703987. ------
17-03-18 02:25:01.324 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:25:01.324 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17262 mm
17-03-18 02:25:01.324 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:25:01.324 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:25:01.324 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 02:25:01.324 -07 000000576 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-18 02:25:01.324 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 37709, sync = True, waitForSettling = False)
17-03-18 02:25:01.324 -07 000000462 INF: Z Motor: Moving to -0.172621 mm, started at -0.166404 mm, distance = -6.22 um
17-03-18 02:25:01.334 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:25:01.334 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:01.334 -07 000000629 INF: FPGA: Recv YRDPOS 149864
17-03-18 02:25:01.344 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:25:01.344 -07 000000576 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:01.344 -07 000000576 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:25:01.344 -07 000000576 INF: Y Motor: Moving 1355 steps-35
17-03-18 02:25:01.344 -07 000000462 INF: FPGA: Xmit ZDACW 37709\n [Z Motor]
17-03-18 02:25:01.344 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:25:01.354 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:25:01.354 -07 000000462 INF: FPGA: 'ZDACW 37709' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:25:01.364 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:25:01.374 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:25:01.374 -07 000000444 INF: FPGA: Recv ZDACR 37709
17-03-18 02:25:01.384 -07 000000462 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:25:01.384 -07 000000462 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 02:25:01.474 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:25:01.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:25:01.534 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 02:25:01.534 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:25:01.534 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:01.534 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:25:01.534 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:25:01.534 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:01.534 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:25:01.534 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:25:01.534 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:25:01.544 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:25:01.554 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:25:01.554 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:25:01.734 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 02:25:01.734 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:25:01.774 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:01.774 -07 000000579 INF: FPGA: Recv YRDPOS 151568
17-03-18 02:25:01.784 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:25:01.784 -07 000000576 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:01.784 -07 000000576 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 02:25:01.784 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.847 mm, average velocity = 2.133 mm/sec
17-03-18 02:25:02.734 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:02.734 -07 000000461 INF: FPGA: Recv YRDPOS 151568
17-03-18 02:25:02.744 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:25:02.744 -07 000000576 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:02.764 -07 000000576 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:25:02.764 -07 000000576 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:25:02.764 -07 000000576 INF: Y Motor: Moved to 74.0078 after 1434 ms (table move)
17-03-18 02:25:02.764 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172621 mm (DAC = 37709)
17-03-18 02:25:02.764 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:02.764 -07 000000626 INF: FPGA: Recv ZSGSRD 36163
17-03-18 02:25:02.774 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 02:25:02.774 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:02.774 -07 000000569 INF: FPGA: Recv ZSGSRD 36165
17-03-18 02:25:02.784 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:02.784 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:02.784 -07 000000629 INF: FPGA: Recv ZSGSRD 36161
17-03-18 02:25:02.794 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:02.794 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:02.794 -07 000000590 INF: FPGA: Recv ZSGSRD 36163
17-03-18 02:25:02.804 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:02.804 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:02.804 -07 000000606 INF: FPGA: Recv ZSGSRD 36165
17-03-18 02:25:02.814 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:02.814 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:02.814 -07 000000590 INF: FPGA: Recv ZSGSRD 36161
17-03-18 02:25:02.824 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:02.824 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:02.824 -07 000000461 INF: FPGA: Recv ZSGSRD 36158
17-03-18 02:25:02.834 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:02.834 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:02.834 -07 000000467 INF: FPGA: Recv ZSGSRD 36159
17-03-18 02:25:02.844 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:02.844 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:02.844 -07 000000561 INF: FPGA: Recv ZSGSRD 36161
17-03-18 02:25:02.854 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:02.854 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:02.854 -07 000000629 INF: FPGA: Recv ZSGSRD 36157
17-03-18 02:25:02.864 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:02.864 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:25:02.864 -07 000000590 INF: FPGA: Recv ZPIEZORD 32251
17-03-18 02:25:02.874 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:02.874 -07 000000502 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.754 V. Piezo Error = -8.6 V.
17-03-18 02:25:02.874 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36161 (-171.7 uncal um), Error = 0.9 uncal um, Median = 36161 (-171.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36157 (-171.7 uncal um), Max = 36165 (-171.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:25:02.874 -07 000000502 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36161, posNoise = 4, negNoise = 4
17-03-18 02:25:02.874 -07 000000502 INF: Z Motor: After move to -0.172621, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:25:02.874 -07 000000502 INF: Z Motor: Settle wait time = 1438 ms, measure time = 104 ms (allowed 150 ms), total time = 1542 ms
17-03-18 02:25:02.874 -07 000000502 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 02:25:02.924 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-18 02:25:02.924 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:25:02.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:25:02.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:25:02.924 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:25:02.924 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:25:02.924 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:25:02.924 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:25:02.924 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:25:02.924 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:25:02.934 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:25:02.934 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:25:02.934 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:25:02.934 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:25:02.944 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:25:02.984 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:25:03.284 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:25:03.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:25:03.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:25:03.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111624864, 0x0, 559484976) start.
17-03-18 02:25:03.324 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:25:03.324 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 02:25:03.324 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 02:25:03.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111624864, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:25:03.404 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:03.404 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:25:03.404 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:25:03.424 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:25:03.424 -07 000000461 INF: Autofocus start
17-03-18 02:25:03.424 -07 000000461 INF: MeasureProfile start
17-03-18 02:25:03.424 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:25:03.434 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:25:03.434 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:25:03.434 -07 000000461 INF: MeasureProfile done
17-03-18 02:25:03.434 -07 000000461 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:25:03.434 -07 000000461 INF: Autofocus finished
17-03-18 02:25:03.634 -07 000000430 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:25:03.634 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:25:03.634 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.172629287269353. ----------
17-03-18 02:25:03.634 -07 000000610 INF: Cycle	99	Tile	18	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:25:03.644 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36224, sync = True, waitForSettling = True)
17-03-18 02:25:03.644 -07 000000610 INF: Z Motor: Moving to -0.165823 mm, started at -0.172629 mm, distance = 6.81 um
17-03-18 02:25:03.644 -07 000000610 INF: FPGA: Xmit ZDACW 36224\n [Z Motor]
17-03-18 02:25:03.644 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:25:03.654 -07 000000610 INF: FPGA: 'ZDACW 36224' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:25:03.654 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:25:03.654 -07 000000618 INF: FPGA: Recv ZDACR 36224
17-03-18 02:25:03.664 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:03.664 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:25:03.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:03.814 -07 000000512 INF: FPGA: Recv ZSGSRD 35105
17-03-18 02:25:03.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:25:03.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:03.824 -07 000000626 INF: FPGA: Recv ZSGSRD 35102
17-03-18 02:25:03.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:03.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:03.834 -07 000000467 INF: FPGA: Recv ZSGSRD 35098
17-03-18 02:25:03.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:03.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:03.844 -07 000000626 INF: FPGA: Recv ZSGSRD 35101
17-03-18 02:25:03.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:03.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:03.854 -07 000000576 INF: FPGA: Recv ZSGSRD 35110
17-03-18 02:25:03.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:03.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:03.864 -07 000000626 INF: FPGA: Recv ZSGSRD 35110
17-03-18 02:25:03.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:03.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:03.874 -07 000000618 INF: FPGA: Recv ZSGSRD 35098
17-03-18 02:25:03.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:03.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:03.884 -07 000000430 INF: FPGA: Recv ZSGSRD 35102
17-03-18 02:25:03.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:03.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:03.894 -07 000000424 INF: FPGA: Recv ZSGSRD 35102
17-03-18 02:25:03.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:03.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:03.904 -07 000000462 INF: FPGA: Recv ZSGSRD 35107
17-03-18 02:25:03.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:03.914 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:25:03.914 -07 000000501 INF: FPGA: Recv ZPIEZORD 30834
17-03-18 02:25:03.924 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:03.924 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.527 V. Piezo Error = -9.4 V.
17-03-18 02:25:03.924 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.8 um, Read 10 ADC samples: Avg = 35104 (-165.0 uncal um), Error = 0.8 uncal um, Median = 35102 (-165.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35098 (-164.9 uncal um), Max = 35110 (-165.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:25:03.924 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35104, posNoise = 6, negNoise = 6
17-03-18 02:25:03.924 -07 000000610 INF: Z Motor: After move to -0.165823, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:25:03.924 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:25:03.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:25:03.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:25:03.924 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:25:03.924 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:25:03.924 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:25:03.924 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:25:03.924 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:25:03.924 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:25:03.924 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:25:03.924 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:25:03.924 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:25:03.924 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:25:03.934 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:25:03.934 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:25:03.934 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:25:03.934 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:25:03.944 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 02:25:03.944 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:25:03.944 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 02:25:03.944 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:25:03.944 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36401 150\n [Camera]
17-03-18 02:25:04.144 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:25:04.544 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:25:04.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:25:04.544 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:25:04.544 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:25:04.544 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 02:25:04.544 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:25:04.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:25:04.544 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:25:04.544 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:25:04.544 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 02:25:04.734 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36401 780
17-03-18 02:25:04.884 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:25:04.944 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:25:04.944 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:25:04.944 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:04.944 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 02:25:04.944 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:25:04.944 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:04.944 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:25:04.944 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:25:04.944 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:25:04.954 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 02:25:05.074 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:25:05.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:25:05.074 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:25:05.074 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:25:05.074 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 02:25:05.074 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:25:05.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:25:05.074 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:25:05.074 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:25:05.074 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 02:25:05.264 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:25:05.264 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:25:05.264 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36401 150' command took 2 ms to send, 1319 ms to get response, and 1322 ms overall
17-03-18 02:25:05.274 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:25:05.274 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.165838895035512. ------
17-03-18 02:25:05.404 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:25:05.404 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17173 mm
17-03-18 02:25:05.404 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:25:05.404 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:25:05.404 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 02:25:05.404 -07 000000467 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 02:25:05.404 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 37514, sync = True, waitForSettling = False)
17-03-18 02:25:05.404 -07 000000430 INF: Z Motor: Moving to -0.171728 mm, started at -0.165839 mm, distance = -5.89 um
17-03-18 02:25:05.414 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:05.414 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:25:05.414 -07 000000629 INF: FPGA: Recv YRDPOS 151568
17-03-18 02:25:05.424 -07 000000430 INF: FPGA: Xmit ZDACW 37514\n [Z Motor]
17-03-18 02:25:05.424 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:25:05.424 -07 000000467 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:05.424 -07 000000467 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:25:05.424 -07 000000467 INF: Y Motor: Moving 1352 steps-30
17-03-18 02:25:05.424 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:25:05.434 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:25:05.434 -07 000000430 INF: FPGA: 'ZDACW 37514' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:25:05.444 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:25:05.454 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:25:05.454 -07 000000579 INF: FPGA: Recv ZDACR 37514
17-03-18 02:25:05.464 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:25:05.464 -07 000000430 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 02:25:05.484 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 02:25:05.484 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:25:05.484 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:05.484 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 02:25:05.484 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 02:25:05.484 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:05.484 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:25:05.494 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:25:05.494 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 02:25:05.494 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:25:05.634 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:25:05.634 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:25:05.814 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 02:25:05.814 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:25:05.844 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:05.844 -07 000000501 INF: FPGA: Recv YRDPOS 153254
17-03-18 02:25:05.854 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:25:05.854 -07 000000467 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:05.854 -07 000000467 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 02:25:05.854 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-18 02:25:06.344 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 4.012614,
17-03-18 02:25:06.474 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:25:06.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:25:06.804 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:06.804 -07 000000591 INF: FPGA: Recv YRDPOS 153254
17-03-18 02:25:06.814 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:06.814 -07 000000467 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:06.824 -07 000000467 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:25:06.824 -07 000000467 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:25:06.824 -07 000000467 INF: Y Motor: Moved to 74.8311 after 1424 ms (table move)
17-03-18 02:25:06.834 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171728 mm (DAC = 37514)
17-03-18 02:25:06.834 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:06.834 -07 000000606 INF: FPGA: Recv ZSGSRD 36020
17-03-18 02:25:06.844 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:25:06.844 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:06.844 -07 000000424 INF: FPGA: Recv ZSGSRD 36016
17-03-18 02:25:06.854 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:06.854 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:06.854 -07 000000561 INF: FPGA: Recv ZSGSRD 36019
17-03-18 02:25:06.864 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:06.864 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:06.864 -07 000000444 INF: FPGA: Recv ZSGSRD 36017
17-03-18 02:25:06.874 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:06.874 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:06.874 -07 000000467 INF: FPGA: Recv ZSGSRD 36023
17-03-18 02:25:06.884 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:06.884 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:06.884 -07 000000606 INF: FPGA: Recv ZSGSRD 36027
17-03-18 02:25:06.894 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:06.894 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:06.894 -07 000000424 INF: FPGA: Recv ZSGSRD 36028
17-03-18 02:25:06.904 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:06.904 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:06.904 -07 000000561 INF: FPGA: Recv ZSGSRD 36020
17-03-18 02:25:06.914 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:06.914 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:06.914 -07 000000512 INF: FPGA: Recv ZSGSRD 36021
17-03-18 02:25:06.924 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:06.924 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:06.924 -07 000000591 INF: FPGA: Recv ZSGSRD 36017
17-03-18 02:25:06.934 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:06.934 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:25:06.934 -07 000000569 INF: FPGA: Recv ZPIEZORD 32071
17-03-18 02:25:06.944 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:06.944 -07 000000455 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.724 V. Piezo Error = -8.7 V.
17-03-18 02:25:06.944 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36021 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36020 (-170.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36016 (-170.8 uncal um), Max = 36028 (-170.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:25:06.944 -07 000000455 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36021, posNoise = 7, negNoise = 5
17-03-18 02:25:06.944 -07 000000455 INF: Z Motor: After move to -0.171728, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:25:06.944 -07 000000455 INF: Z Motor: Settle wait time = 1428 ms, measure time = 107 ms (allowed 150 ms), total time = 1535 ms
17-03-18 02:25:06.944 -07 000000455 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:25:06.994 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1588 ms
17-03-18 02:25:06.994 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:25:06.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:25:06.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:25:06.994 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:25:06.994 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:25:06.994 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:25:06.994 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:25:06.994 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:25:06.994 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:25:07.004 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:25:07.004 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:25:07.004 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:25:07.004 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:25:07.014 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:25:07.054 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:25:07.354 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:25:07.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:25:07.354 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:25:07.354 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:25:07.394 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:25:07.394 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 02:25:07.394 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 02:25:07.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:25:07.474 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:07.474 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:25:07.474 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:25:07.494 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:25:07.494 -07 000000502 INF: Autofocus start
17-03-18 02:25:07.494 -07 000000502 INF: MeasureProfile start
17-03-18 02:25:07.494 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:25:07.504 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:25:07.504 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:25:07.514 -07 000000502 INF: MeasureProfile done
17-03-18 02:25:07.514 -07 000000502 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:25:07.514 -07 000000502 INF: Autofocus finished
17-03-18 02:25:07.704 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:25:07.704 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:25:07.704 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.171729897569506. ----------
17-03-18 02:25:07.704 -07 000000610 INF: Cycle	99	Tile	19	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:25:07.714 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36046, sync = True, waitForSettling = True)
17-03-18 02:25:07.714 -07 000000610 INF: Z Motor: Moving to -0.165008 mm, started at -0.171730 mm, distance = 6.72 um
17-03-18 02:25:07.714 -07 000000610 INF: FPGA: Xmit ZDACW 36046\n [Z Motor]
17-03-18 02:25:07.714 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:25:07.724 -07 000000610 INF: FPGA: 'ZDACW 36046' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:25:07.724 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:25:07.724 -07 000000590 INF: FPGA: Recv ZDACR 36046
17-03-18 02:25:07.734 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:07.734 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:25:07.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:07.884 -07 000000579 INF: FPGA: Recv ZSGSRD 34981
17-03-18 02:25:07.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:25:07.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:07.894 -07 000000502 INF: FPGA: Recv ZSGSRD 34981
17-03-18 02:25:07.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:07.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:07.904 -07 000000461 INF: FPGA: Recv ZSGSRD 34976
17-03-18 02:25:07.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:07.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:07.914 -07 000000629 INF: FPGA: Recv ZSGSRD 34971
17-03-18 02:25:07.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:07.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:07.924 -07 000000626 INF: FPGA: Recv ZSGSRD 34976
17-03-18 02:25:07.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:07.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:07.934 -07 000000579 INF: FPGA: Recv ZSGSRD 34983
17-03-18 02:25:07.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:07.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:07.944 -07 000000561 INF: FPGA: Recv ZSGSRD 34982
17-03-18 02:25:07.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:07.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:07.954 -07 000000606 INF: FPGA: Recv ZSGSRD 34973
17-03-18 02:25:07.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:07.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:07.964 -07 000000462 INF: FPGA: Recv ZSGSRD 34975
17-03-18 02:25:07.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:07.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:07.974 -07 000000455 INF: FPGA: Recv ZSGSRD 34982
17-03-18 02:25:07.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:07.984 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:25:07.984 -07 000000579 INF: FPGA: Recv ZPIEZORD 30709
17-03-18 02:25:07.994 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:07.994 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.500 V. Piezo Error = -9.4 V.
17-03-18 02:25:07.994 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.0 um, Read 10 ADC samples: Avg = 34978 (-164.2 uncal um), Error = 0.8 uncal um, Median = 34978 (-164.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 34971 (-164.1 uncal um), Max = 34983 (-164.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:25:07.994 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34978, posNoise = 5, negNoise = 7
17-03-18 02:25:07.994 -07 000000610 INF: Z Motor: After move to -0.165008, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:25:07.994 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:25:07.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:25:07.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:25:07.994 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:25:07.994 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:25:07.994 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:25:07.994 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:25:07.994 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:25:07.994 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:25:07.994 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:25:07.994 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:25:08.004 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:25:08.004 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:25:08.004 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:25:08.004 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:25:08.004 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:25:08.004 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:25:08.014 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 02:25:08.014 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:25:08.014 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:25:08.014 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:25:08.014 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36223 150\n [Camera]
17-03-18 02:25:08.214 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:25:08.614 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:25:08.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:25:08.614 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:25:08.614 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:25:08.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:25:08.614 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:25:08.614 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:25:08.614 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:25:08.624 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:25:08.624 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1145266312, 0x0, 391868352) start.
17-03-18 02:25:08.804 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36223 780
17-03-18 02:25:08.954 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:25:09.014 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 02:25:09.014 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:25:09.014 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:09.014 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:25:09.014 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1145266312, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 02:25:09.014 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:25:09.014 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:09.014 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:25:09.014 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:25:09.024 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:25:09.144 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:25:09.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:25:09.144 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:25:09.144 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:25:09.144 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 02:25:09.144 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:25:09.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:25:09.144 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:25:09.144 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:25:09.144 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:25:09.334 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:25:09.334 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:25:09.334 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36223 150' command took 2 ms to send, 1314 ms to get response, and 1320 ms overall
17-03-18 02:25:09.534 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 02:25:09.534 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:25:09.534 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:09.544 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:25:09.544 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 02:25:09.544 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:25:09.544 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:09.544 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:25:09.544 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:25:09.544 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 02:25:09.544 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:25:09.684 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 131 ms.
17-03-18 02:25:09.684 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 02:25:09.724 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 02:25:09.724 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 02:25:09.724 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 02:25:09.724 -07 000000561 INF: FPGA: Recv EMCUR 
17-03-18 02:25:09.734 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:25:09.734 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 02:25:10.234 -07 000000590 INF: FPGA: Recv EMIN
17-03-18 02:25:10.234 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 02:25:10.234 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 02:25:10.234 -07 000000579 INF: FPGA: Recv EMCUR 
17-03-18 02:25:10.244 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:25:10.244 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:25:10.244 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8310546875, Z-Position -0.16502944430565. ------
17-03-18 02:25:10.244 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:25:10.244 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13969 mm
17-03-18 02:25:10.244 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:25:10.244 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 02:25:10.244 -07 000000455 INF: Y Motor: Moving to 59.9126 mm, started at 74.8311 mm, delta = -14.9184 mm
17-03-18 02:25:10.244 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:25:10.254 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:25:10.254 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:10.254 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 30514, sync = True, waitForSettling = False)
17-03-18 02:25:10.254 -07 000000606 INF: Z Motor: Moving to -0.139684 mm, started at -0.165029 mm, distance = 25.35 um
17-03-18 02:25:10.254 -07 000000629 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:25:10.264 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:25:10.264 -07 000000455 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:10.264 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:25:10.264 -07 000000455 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 02:25:10.264 -07 000000455 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 02:25:10.274 -07 000000606 INF: FPGA: Xmit ZDACW 30514\n [Z Motor]
17-03-18 02:25:10.274 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:25:10.284 -07 000000606 INF: FPGA: 'ZDACW 30514' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:25:10.284 -07 000000455 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 02:25:10.294 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:25:10.294 -07 000000462 INF: FPGA: Recv ZDACR 30514
17-03-18 02:25:10.304 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:25:10.304 -07 000000606 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 02:25:10.464 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:25:10.464 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 02:25:11.474 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:25:11.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:25:11.704 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 3.990831,
17-03-18 02:25:11.904 -07 000000424 INF: FPGA: Recv YMVTO 122703 23903
17-03-18 02:25:11.904 -07 000000455 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1641 ms overall
17-03-18 02:25:11.904 -07 000000455 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 02:25:11.904 -07 000000455 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23871 steps, but required 23903 steps (14.939 mm). Slippage = 0.020 mm (0.00%).
17-03-18 02:25:11.904 -07 000000455 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1641 ms, distance = 14.918 mm, average velocity = 9.091 mm/sec
17-03-18 02:25:14.754 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:14.754 -07 000000606 INF: FPGA: Recv YRDPOS 122698
17-03-18 02:25:14.764 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:25:14.764 -07 000000455 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:14.794 -07 000000455 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:25:14.794 -07 000000455 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-18 02:25:14.794 -07 000000455 INF: Y Motor: Moved to 59.9111 after 4550 ms
17-03-18 02:25:14.804 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139684 mm (DAC = 30514)
17-03-18 02:25:14.804 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:14.804 -07 000000462 INF: FPGA: Recv ZSGSRD 31032
17-03-18 02:25:14.814 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:25:14.814 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:14.814 -07 000000626 INF: FPGA: Recv ZSGSRD 31030
17-03-18 02:25:14.824 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:14.824 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:14.824 -07 000000501 INF: FPGA: Recv ZSGSRD 31033
17-03-18 02:25:14.834 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:25:14.834 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:14.834 -07 000000430 INF: FPGA: Recv ZSGSRD 31035
17-03-18 02:25:14.844 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:14.844 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:14.844 -07 000000501 INF: FPGA: Recv ZSGSRD 31035
17-03-18 02:25:14.854 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:14.854 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:14.854 -07 000000629 INF: FPGA: Recv ZSGSRD 31038
17-03-18 02:25:14.864 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:14.864 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:14.864 -07 000000579 INF: FPGA: Recv ZSGSRD 31033
17-03-18 02:25:14.874 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:14.874 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:14.874 -07 000000606 INF: FPGA: Recv ZSGSRD 31033
17-03-18 02:25:14.884 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:14.884 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:14.884 -07 000000626 INF: FPGA: Recv ZSGSRD 31040
17-03-18 02:25:14.894 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:14.894 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:14.894 -07 000000455 INF: FPGA: Recv ZSGSRD 31034
17-03-18 02:25:14.904 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:14.904 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:25:14.904 -07 000000502 INF: FPGA: Recv ZPIEZORD 26545
17-03-18 02:25:14.914 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:14.914 -07 000000561 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.656 V. Piezo Error = -9.9 V.
17-03-18 02:25:14.914 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.7 um, Read 10 ADC samples: Avg = 31034 (-138.9 uncal um), Error = 0.8 uncal um, Median = 31034 (-138.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 31030 (-138.9 uncal um), Max = 31040 (-138.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:25:14.914 -07 000000561 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31034, posNoise = 6, negNoise = 4
17-03-18 02:25:14.914 -07 000000561 INF: Z Motor: After move to -0.139684, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:25:14.914 -07 000000561 INF: Z Motor: Settle wait time = 4551 ms, measure time = 108 ms (allowed 150 ms), total time = 4659 ms
17-03-18 02:25:14.914 -07 000000561 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:25:14.964 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4715 ms
17-03-18 02:25:14.964 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:25:14.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:25:14.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:25:14.964 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:25:14.964 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:25:14.964 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:25:14.964 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:25:14.964 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:25:14.964 -07 000000591 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 02:25:14.994 -07 000000591 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-18 02:25:14.994 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:25:14.994 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:25:14.994 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:25:14.994 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:25:14.994 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms.
17-03-18 02:25:15.004 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:25:15.044 -07 000000430 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:25:15.344 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:25:15.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:25:15.344 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:25:15.344 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:25:15.384 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:25:15.384 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 02:25:15.384 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:25:15.464 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:25:15.464 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:15.464 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:25:15.464 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:25:15.484 -07 000000501 INF: Image SNR check: start
17-03-18 02:25:15.484 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:25:15.484 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:25:15.494 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:25:15.494 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:25:15.494 -07 000000501 INF: Image SNR check: pass  [peak (Max-Min)=134.26]
17-03-18 02:25:15.494 -07 000000501 INF: Autofocus start
17-03-18 02:25:15.494 -07 000000501 INF: MeasureProfile start
17-03-18 02:25:15.514 -07 000000501 INF: MeasureProfile done
17-03-18 02:25:15.514 -07 000000501 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:25:15.514 -07 000000501 INF: Autofocus finished
17-03-18 02:25:15.694 -07 000000430 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:25:15.694 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:25:15.694 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.139692351618545. ----------
17-03-18 02:25:15.704 -07 000000610 INF: Cycle	99	Tile	1	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:25:15.704 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29009, sync = True, waitForSettling = True)
17-03-18 02:25:15.704 -07 000000610 INF: Z Motor: Moving to -0.132795 mm, started at -0.139692 mm, distance = 6.90 um
17-03-18 02:25:15.704 -07 000000610 INF: FPGA: Xmit ZDACW 29009\n [Z Motor]
17-03-18 02:25:15.704 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:25:15.714 -07 000000610 INF: FPGA: 'ZDACW 29009' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:25:15.714 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:25:15.714 -07 000000467 INF: FPGA: Recv ZDACR 29009
17-03-18 02:25:15.724 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:15.724 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:25:15.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:15.874 -07 000000579 INF: FPGA: Recv ZSGSRD 29963
17-03-18 02:25:15.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:25:15.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:15.884 -07 000000501 INF: FPGA: Recv ZSGSRD 29961
17-03-18 02:25:15.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:25:15.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:15.904 -07 000000444 INF: FPGA: Recv ZSGSRD 29964
17-03-18 02:25:15.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:25:15.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:15.914 -07 000000467 INF: FPGA: Recv ZSGSRD 29955
17-03-18 02:25:15.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:15.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:15.924 -07 000000591 INF: FPGA: Recv ZSGSRD 29959
17-03-18 02:25:15.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:15.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:15.934 -07 000000512 INF: FPGA: Recv ZSGSRD 29958
17-03-18 02:25:15.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:15.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:15.944 -07 000000561 INF: FPGA: Recv ZSGSRD 29962
17-03-18 02:25:15.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:15.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:15.954 -07 000000444 INF: FPGA: Recv ZSGSRD 29961
17-03-18 02:25:15.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:15.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:15.964 -07 000000626 INF: FPGA: Recv ZSGSRD 29960
17-03-18 02:25:15.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:15.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:15.974 -07 000000455 INF: FPGA: Recv ZSGSRD 29965
17-03-18 02:25:15.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:15.984 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:25:15.984 -07 000000461 INF: FPGA: Recv ZPIEZORD 25392
17-03-18 02:25:15.994 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:15.994 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.426 V. Piezo Error = -10.0 V.
17-03-18 02:25:15.994 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29961 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29961 (-132.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29955 (-132.0 uncal um), Max = 29965 (-132.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:25:15.994 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29961, posNoise = 4, negNoise = 6
17-03-18 02:25:15.994 -07 000000610 INF: Z Motor: After move to -0.132795, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:25:15.994 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 02:25:15.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:25:15.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:25:15.994 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:25:15.994 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:25:15.994 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:25:15.994 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:25:15.994 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:25:15.994 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:25:15.994 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:25:15.994 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:25:15.994 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:25:15.994 -07 000000591 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 02:25:16.004 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:25:16.004 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:25:16.004 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:25:16.014 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:25:16.014 -07 000000591 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 02:25:16.014 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:25:16.024 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:25:16.024 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:25:16.034 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 02:25:16.034 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-18 02:25:16.034 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 29186 150\n [Camera]
17-03-18 02:25:16.234 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:25:16.474 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:25:16.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:25:16.634 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:25:16.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:25:16.634 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:25:16.634 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:25:16.634 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:25:16.634 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:25:16.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:25:16.634 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:25:16.634 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:25:16.634 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) start.
17-03-18 02:25:16.824 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29186 780
17-03-18 02:25:16.974 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:25:17.024 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:25:17.024 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:25:17.024 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:17.024 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 02:25:17.024 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:25:17.024 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:17.034 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:25:17.034 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:25:17.034 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:25:17.044 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 02:25:17.064 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 4.004458,
17-03-18 02:25:17.164 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:25:17.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:25:17.164 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:25:17.164 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:25:17.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:25:17.164 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:25:17.164 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:25:17.164 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:25:17.284 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:25:17.284 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 02:25:17.354 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:25:17.354 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:25:17.354 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 29186 150' command took 2 ms to send, 1317 ms to get response, and 1320 ms overall
17-03-18 02:25:17.354 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:25:17.354 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.132799171990435. ------
17-03-18 02:25:17.364 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:25:17.364 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13909 mm
17-03-18 02:25:17.364 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:25:17.364 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 02:25:17.364 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30384, sync = True, waitForSettling = False)
17-03-18 02:25:17.364 -07 000000626 INF: Z Motor: Moving to -0.139089 mm, started at -0.132799 mm, distance = -6.29 um
17-03-18 02:25:17.364 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:25:17.364 -07 000000461 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-18 02:25:17.374 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:25:17.374 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:17.374 -07 000000579 INF: FPGA: Recv YRDPOS 122698
17-03-18 02:25:17.384 -07 000000626 INF: FPGA: Xmit ZDACW 30384\n [Z Motor]
17-03-18 02:25:17.384 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:25:17.384 -07 000000461 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:17.384 -07 000000461 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:25:17.384 -07 000000461 INF: Y Motor: Moving 1330 steps2
17-03-18 02:25:17.384 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:25:17.394 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:25:17.394 -07 000000626 INF: FPGA: 'ZDACW 30384' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:25:17.404 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:25:17.414 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:25:17.414 -07 000000590 INF: FPGA: Recv ZDACR 30384
17-03-18 02:25:17.424 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:25:17.424 -07 000000626 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 02:25:17.564 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 02:25:17.564 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:25:17.564 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:17.564 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:25:17.564 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:25:17.594 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:25:17.594 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:25:17.684 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 02:25:17.684 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:25:17.684 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:17.684 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:25:17.694 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 521 ms.
17-03-18 02:25:17.774 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 02:25:17.774 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:25:17.814 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:17.814 -07 000000606 INF: FPGA: Recv YRDPOS 124381
17-03-18 02:25:17.824 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:25:17.824 -07 000000461 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:17.824 -07 000000461 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 02:25:17.824 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.094 mm/sec
17-03-18 02:25:18.774 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:18.774 -07 000000561 INF: FPGA: Recv YRDPOS 124382
17-03-18 02:25:18.784 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:25:18.784 -07 000000461 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:18.804 -07 000000461 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:25:18.804 -07 000000461 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:25:18.804 -07 000000461 INF: Y Motor: Moved to 60.7334 after 1441 ms (table move)
17-03-18 02:25:18.814 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139089 mm (DAC = 30384)
17-03-18 02:25:18.814 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:18.814 -07 000000606 INF: FPGA: Recv ZSGSRD 30949
17-03-18 02:25:18.824 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:25:18.824 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:18.824 -07 000000618 INF: FPGA: Recv ZSGSRD 30936
17-03-18 02:25:18.834 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:18.834 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:18.834 -07 000000579 INF: FPGA: Recv ZSGSRD 30947
17-03-18 02:25:18.844 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:18.844 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:18.844 -07 000000590 INF: FPGA: Recv ZSGSRD 30949
17-03-18 02:25:18.854 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:18.854 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:18.854 -07 000000576 INF: FPGA: Recv ZSGSRD 30950
17-03-18 02:25:18.864 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:18.864 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:18.864 -07 000000424 INF: FPGA: Recv ZSGSRD 30934
17-03-18 02:25:18.874 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:18.874 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:18.874 -07 000000618 INF: FPGA: Recv ZSGSRD 30950
17-03-18 02:25:18.884 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:18.884 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:18.884 -07 000000430 INF: FPGA: Recv ZSGSRD 30933
17-03-18 02:25:18.894 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:18.894 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:18.894 -07 000000455 INF: FPGA: Recv ZSGSRD 30942
17-03-18 02:25:18.904 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:18.904 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:18.904 -07 000000462 INF: FPGA: Recv ZSGSRD 30938
17-03-18 02:25:18.914 -07 000000502 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:18.914 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:25:18.914 -07 000000576 INF: FPGA: Recv ZPIEZORD 26702
17-03-18 02:25:18.924 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:18.924 -07 000000502 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.636 V. Piezo Error = -9.3 V.
17-03-18 02:25:18.924 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30943 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30944 (-138.3 uncal um), StdDev = 7 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30933 (-138.2 uncal um), Max = 30950 (-138.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 02:25:18.924 -07 000000502 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30943, posNoise = 7, negNoise = 10
17-03-18 02:25:18.924 -07 000000502 INF: Z Motor: After move to -0.139089, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:25:18.924 -07 000000502 INF: Z Motor: Settle wait time = 1445 ms, measure time = 109 ms (allowed 150 ms), total time = 1554 ms
17-03-18 02:25:18.924 -07 000000502 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:25:18.974 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-18 02:25:18.974 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:25:18.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:25:18.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:25:18.974 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:25:18.974 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:25:18.974 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:25:18.974 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:25:18.974 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:25:18.974 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:25:18.984 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:25:18.984 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:25:18.994 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:25:18.994 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:25:18.994 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:25:19.044 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:25:19.344 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:25:19.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:25:19.344 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:25:19.344 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111624864, 0x0, 559484976) start.
17-03-18 02:25:19.384 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:25:19.384 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 02:25:19.384 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 02:25:19.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111624864, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:25:19.474 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:19.474 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:25:19.474 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 02:25:19.484 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:25:19.484 -07 000000618 INF: Autofocus start
17-03-18 02:25:19.484 -07 000000618 INF: MeasureProfile start
17-03-18 02:25:19.484 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:25:19.494 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:25:19.494 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:25:19.494 -07 000000618 INF: MeasureProfile done
17-03-18 02:25:19.494 -07 000000618 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:25:19.494 -07 000000618 INF: Autofocus finished
17-03-18 02:25:19.694 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:25:19.694 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 2 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 02:25:19.694 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.139107748313644. ----------
17-03-18 02:25:19.704 -07 000000610 INF: Cycle	99	Tile	2	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:25:19.704 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28891, sync = True, waitForSettling = True)
17-03-18 02:25:19.704 -07 000000610 INF: Z Motor: Moving to -0.132255 mm, started at -0.139108 mm, distance = 6.85 um
17-03-18 02:25:19.704 -07 000000610 INF: FPGA: Xmit ZDACW 28891\n [Z Motor]
17-03-18 02:25:19.704 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:25:19.714 -07 000000610 INF: FPGA: 'ZDACW 28891' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:25:19.714 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:25:19.714 -07 000000444 INF: FPGA: Recv ZDACR 28891
17-03-18 02:25:19.724 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:19.724 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:25:19.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:19.874 -07 000000455 INF: FPGA: Recv ZSGSRD 29881
17-03-18 02:25:19.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:25:19.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:19.884 -07 000000626 INF: FPGA: Recv ZSGSRD 29879
17-03-18 02:25:19.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:19.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:19.894 -07 000000576 INF: FPGA: Recv ZSGSRD 29874
17-03-18 02:25:19.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:19.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:19.904 -07 000000569 INF: FPGA: Recv ZSGSRD 29878
17-03-18 02:25:19.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:19.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:19.914 -07 000000579 INF: FPGA: Recv ZSGSRD 29872
17-03-18 02:25:19.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:19.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:19.924 -07 000000424 INF: FPGA: Recv ZSGSRD 29876
17-03-18 02:25:19.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:19.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:19.934 -07 000000629 INF: FPGA: Recv ZSGSRD 29880
17-03-18 02:25:19.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:19.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:19.944 -07 000000501 INF: FPGA: Recv ZSGSRD 29875
17-03-18 02:25:19.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:19.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:19.954 -07 000000430 INF: FPGA: Recv ZSGSRD 29875
17-03-18 02:25:19.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:19.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:19.964 -07 000000502 INF: FPGA: Recv ZSGSRD 29875
17-03-18 02:25:19.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:19.974 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:25:19.974 -07 000000455 INF: FPGA: Recv ZPIEZORD 25356
17-03-18 02:25:19.984 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:19.984 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.408 V. Piezo Error = -9.9 V.
17-03-18 02:25:19.984 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29876 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29876 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29872 (-131.4 uncal um), Max = 29881 (-131.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:25:19.984 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29876, posNoise = 5, negNoise = 4
17-03-18 02:25:19.984 -07 000000610 INF: Z Motor: After move to -0.132255, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:25:19.984 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:25:19.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:25:19.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:25:19.984 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:25:19.984 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:25:19.984 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:25:19.984 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:25:19.984 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:25:19.984 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:25:19.984 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:25:19.984 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:25:19.984 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:25:19.984 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:25:19.994 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:25:19.994 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:25:19.994 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-18 02:25:19.994 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:25:20.004 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:25:20.004 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:25:20.004 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:25:20.004 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:25:20.004 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 29068 150\n [Camera]
17-03-18 02:25:20.214 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:25:20.604 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:25:20.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:25:20.604 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:25:20.604 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:25:20.604 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-18 02:25:20.604 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:25:20.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:25:20.604 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:25:20.604 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:25:20.604 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) start.
17-03-18 02:25:20.794 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29068 780
17-03-18 02:25:20.944 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:25:20.994 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 02:25:20.994 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:25:20.994 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:21.004 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:25:21.004 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:25:21.004 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:25:21.004 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:21.004 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:25:21.004 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:25:21.004 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:25:21.134 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:25:21.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:25:21.134 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:25:21.134 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:25:21.134 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 02:25:21.144 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:25:21.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:25:21.144 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:25:21.144 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:25:21.144 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 02:25:21.324 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:25:21.334 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:25:21.334 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 29068 150' command took 2 ms to send, 1310 ms to get response, and 1320 ms overall
17-03-18 02:25:21.334 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:25:21.334 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.132253113958385. ------
17-03-18 02:25:21.334 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:25:21.334 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13894 mm
17-03-18 02:25:21.334 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:25:21.334 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 02:25:21.334 -07 000000512 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-18 02:25:21.334 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 30352, sync = True, waitForSettling = False)
17-03-18 02:25:21.334 -07 000000430 INF: Z Motor: Moving to -0.138943 mm, started at -0.132253 mm, distance = -6.69 um
17-03-18 02:25:21.334 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:25:21.344 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:25:21.344 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:21.344 -07 000000444 INF: FPGA: Recv YRDPOS 124382
17-03-18 02:25:21.354 -07 000000430 INF: FPGA: Xmit ZDACW 30352\n [Z Motor]
17-03-18 02:25:21.354 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:25:21.354 -07 000000512 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:21.354 -07 000000512 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:25:21.354 -07 000000512 INF: Y Motor: Moving 1343 steps-20
17-03-18 02:25:21.354 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:25:21.364 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:25:21.364 -07 000000430 INF: FPGA: 'ZDACW 30352' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:25:21.374 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:25:21.384 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:25:21.384 -07 000000590 INF: FPGA: Recv ZDACR 30352
17-03-18 02:25:21.394 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:25:21.394 -07 000000430 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 02:25:21.474 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:25:21.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:25:21.544 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:25:21.544 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:25:21.544 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:21.544 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:25:21.544 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:25:21.544 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:21.544 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:25:21.544 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:25:21.544 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:25:21.554 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:25:21.564 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:25:21.564 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 225 ms overall
17-03-18 02:25:21.744 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 02:25:21.744 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 399 ms overall
17-03-18 02:25:21.794 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:21.794 -07 000000591 INF: FPGA: Recv YRDPOS 126082
17-03-18 02:25:21.804 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:25:21.804 -07 000000512 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:21.804 -07 000000512 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:25:21.804 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.839 mm, average velocity = 2.103 mm/sec
17-03-18 02:25:22.424 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 3.98264,
17-03-18 02:25:22.754 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:22.754 -07 000000591 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:25:22.764 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:25:22.764 -07 000000512 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:22.784 -07 000000512 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:25:22.784 -07 000000512 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:25:22.784 -07 000000512 INF: Y Motor: Moved to 61.5640 after 1451 ms (table move)
17-03-18 02:25:22.794 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138943 mm (DAC = 30352)
17-03-18 02:25:22.794 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:22.794 -07 000000462 INF: FPGA: Recv ZSGSRD 30920
17-03-18 02:25:22.804 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:25:22.804 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:22.804 -07 000000591 INF: FPGA: Recv ZSGSRD 30922
17-03-18 02:25:22.814 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:22.814 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:22.814 -07 000000590 INF: FPGA: Recv ZSGSRD 30910
17-03-18 02:25:22.824 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:22.824 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:22.824 -07 000000618 INF: FPGA: Recv ZSGSRD 30914
17-03-18 02:25:22.834 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:22.834 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:22.834 -07 000000512 INF: FPGA: Recv ZSGSRD 30915
17-03-18 02:25:22.844 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:22.844 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:22.844 -07 000000579 INF: FPGA: Recv ZSGSRD 30918
17-03-18 02:25:22.854 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:22.854 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:22.854 -07 000000576 INF: FPGA: Recv ZSGSRD 30919
17-03-18 02:25:22.864 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:22.864 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:22.864 -07 000000569 INF: FPGA: Recv ZSGSRD 30922
17-03-18 02:25:22.874 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:22.874 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:22.874 -07 000000606 INF: FPGA: Recv ZSGSRD 30913
17-03-18 02:25:22.884 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:22.884 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:22.884 -07 000000462 INF: FPGA: Recv ZSGSRD 30921
17-03-18 02:25:22.894 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:22.894 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:25:22.894 -07 000000590 INF: FPGA: Recv ZPIEZORD 26743
17-03-18 02:25:22.904 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:22.904 -07 000000629 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.631 V. Piezo Error = -9.2 V.
17-03-18 02:25:22.904 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30917 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30918 (-138.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30910 (-138.1 uncal um), Max = 30922 (-138.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:25:22.904 -07 000000629 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30917, posNoise = 5, negNoise = 7
17-03-18 02:25:22.904 -07 000000629 INF: Z Motor: After move to -0.138943, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:25:22.904 -07 000000629 INF: Z Motor: Settle wait time = 1454 ms, measure time = 108 ms (allowed 150 ms), total time = 1562 ms
17-03-18 02:25:22.904 -07 000000629 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:25:22.954 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 02:25:22.954 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:25:22.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:25:22.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:25:22.954 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:25:22.954 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:25:22.954 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:25:22.954 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:25:22.954 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:25:22.954 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:25:22.964 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:25:22.964 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:25:22.974 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:25:22.974 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:25:22.974 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:25:23.024 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:25:23.324 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:25:23.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:25:23.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:25:23.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) start.
17-03-18 02:25:23.354 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:25:23.364 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 02:25:23.364 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:25:23.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:25:23.444 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:23.454 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:25:23.454 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 02:25:23.464 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:25:23.464 -07 000000606 INF: Autofocus start
17-03-18 02:25:23.464 -07 000000606 INF: MeasureProfile start
17-03-18 02:25:23.464 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:25:23.474 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:25:23.474 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:25:23.474 -07 000000606 INF: MeasureProfile done
17-03-18 02:25:23.474 -07 000000606 INF: X=32  Z correction [um]=0.1299841
17-03-18 02:25:23.474 -07 000000606 INF: Autofocus finished
17-03-18 02:25:23.674 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:25:23.674 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 02:25:23.674 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.138940718797959. ----------
17-03-18 02:25:23.684 -07 000000610 INF: Cycle	99	Tile	3	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:25:23.684 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28893, sync = True, waitForSettling = True)
17-03-18 02:25:23.684 -07 000000610 INF: Z Motor: Moving to -0.132264 mm, started at -0.138941 mm, distance = 6.68 um
17-03-18 02:25:23.684 -07 000000610 INF: FPGA: Xmit ZDACW 28893\n [Z Motor]
17-03-18 02:25:23.684 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:25:23.694 -07 000000610 INF: FPGA: 'ZDACW 28893' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:25:23.694 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:25:23.694 -07 000000502 INF: FPGA: Recv ZDACR 28893
17-03-18 02:25:23.704 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:23.704 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:25:23.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:23.854 -07 000000430 INF: FPGA: Recv ZSGSRD 29880
17-03-18 02:25:23.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:25:23.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:23.864 -07 000000579 INF: FPGA: Recv ZSGSRD 29879
17-03-18 02:25:23.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:23.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:23.874 -07 000000590 INF: FPGA: Recv ZSGSRD 29871
17-03-18 02:25:23.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:23.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:23.884 -07 000000606 INF: FPGA: Recv ZSGSRD 29875
17-03-18 02:25:23.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:23.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:23.894 -07 000000569 INF: FPGA: Recv ZSGSRD 29878
17-03-18 02:25:23.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:23.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:23.904 -07 000000629 INF: FPGA: Recv ZSGSRD 29880
17-03-18 02:25:23.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:25:23.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:23.914 -07 000000561 INF: FPGA: Recv ZSGSRD 29872
17-03-18 02:25:23.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:23.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:23.924 -07 000000462 INF: FPGA: Recv ZSGSRD 29878
17-03-18 02:25:23.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:23.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:23.934 -07 000000591 INF: FPGA: Recv ZSGSRD 29881
17-03-18 02:25:23.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:23.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:23.944 -07 000000512 INF: FPGA: Recv ZSGSRD 29878
17-03-18 02:25:23.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:23.954 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:25:23.954 -07 000000629 INF: FPGA: Recv ZPIEZORD 25380
17-03-18 02:25:23.964 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:23.964 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.409 V. Piezo Error = -9.9 V.
17-03-18 02:25:23.964 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29877 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29878 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29871 (-131.4 uncal um), Max = 29881 (-131.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:25:23.964 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29877, posNoise = 4, negNoise = 6
17-03-18 02:25:23.964 -07 000000610 INF: Z Motor: After move to -0.132264, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:25:23.964 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:25:23.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:25:23.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:25:23.964 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:25:23.964 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:25:23.964 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:25:23.964 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:25:23.964 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:25:23.964 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:25:23.964 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:25:23.964 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:25:23.964 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:25:23.964 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:25:23.964 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:25:23.964 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:25:23.974 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:25:23.974 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:25:23.974 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:25:23.974 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:25:23.974 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:25:23.974 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:25:23.984 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 29070 150\n [Camera]
17-03-18 02:25:24.184 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:25:24.574 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:25:24.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:25:24.584 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:25:24.584 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:25:24.584 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:25:24.584 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:25:24.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:25:24.584 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:25:24.584 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:25:24.584 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:25:24.774 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29070 780
17-03-18 02:25:24.924 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:25:24.964 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:25:24.964 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:25:24.964 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:24.964 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 02:25:24.964 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:25:24.964 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:24.964 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:25:24.964 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:25:24.964 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:25:24.974 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:25:25.114 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:25:25.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:25:25.114 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:25:25.114 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:25:25.114 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:25:25.114 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:25:25.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:25:25.114 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:25:25.114 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:25:25.114 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:25:25.304 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:25:25.304 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:25:25.304 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 29070 150' command took 2 ms to send, 1314 ms to get response, and 1320 ms overall
17-03-18 02:25:25.304 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:25:25.304 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132259538170527. ------
17-03-18 02:25:25.314 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:25:25.314 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13876 mm
17-03-18 02:25:25.314 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:25:25.314 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 30313, sync = True, waitForSettling = False)
17-03-18 02:25:25.314 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 02:25:25.314 -07 000000626 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-18 02:25:25.314 -07 000000461 INF: Z Motor: Moving to -0.138764 mm, started at -0.132260 mm, distance = -6.50 um
17-03-18 02:25:25.314 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:25:25.324 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:25:25.324 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:25:25.334 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:25.334 -07 000000576 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:25:25.344 -07 000000461 INF: FPGA: Xmit ZDACW 30313\n [Z Motor]
17-03-18 02:25:25.344 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:25:25.344 -07 000000626 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:25.344 -07 000000626 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:25:25.344 -07 000000626 INF: Y Motor: Moving 1342 steps-19
17-03-18 02:25:25.344 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:25:25.354 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:25:25.354 -07 000000461 INF: FPGA: 'ZDACW 30313' command took 0 ms to send, 0 ms to get response, and 34 ms overall
17-03-18 02:25:25.364 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:25:25.364 -07 000000512 INF: FPGA: Recv ZDACR 30313
17-03-18 02:25:25.374 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:25:25.374 -07 000000461 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 02:25:25.494 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 02:25:25.494 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:25:25.494 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:25.494 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:25:25.494 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 02:25:25.494 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:25.504 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:25:25.504 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:25:25.504 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:25:25.504 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:25:25.524 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:25:25.524 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:25:25.724 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 02:25:25.724 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:25:25.774 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:25.774 -07 000000618 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:25:25.784 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:25:25.784 -07 000000626 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:25.784 -07 000000626 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 02:25:25.784 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.167 mm/sec
17-03-18 02:25:26.474 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:25:26.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:25:26.734 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:26.734 -07 000000461 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:25:26.744 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:25:26.744 -07 000000626 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:26.764 -07 000000626 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:25:26.764 -07 000000626 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:25:26.764 -07 000000626 INF: Y Motor: Moved to 62.3955 after 1452 ms (table move)
17-03-18 02:25:26.774 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138764 mm (DAC = 30313)
17-03-18 02:25:26.774 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:26.774 -07 000000629 INF: FPGA: Recv ZSGSRD 30892
17-03-18 02:25:26.784 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:25:26.784 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:26.784 -07 000000590 INF: FPGA: Recv ZSGSRD 30894
17-03-18 02:25:26.794 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:26.794 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:26.794 -07 000000502 INF: FPGA: Recv ZSGSRD 30891
17-03-18 02:25:26.804 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:26.804 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:26.804 -07 000000512 INF: FPGA: Recv ZSGSRD 30892
17-03-18 02:25:26.814 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:26.814 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:26.814 -07 000000462 INF: FPGA: Recv ZSGSRD 30888
17-03-18 02:25:26.824 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:26.824 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:26.824 -07 000000626 INF: FPGA: Recv ZSGSRD 30887
17-03-18 02:25:26.834 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:26.834 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:26.834 -07 000000618 INF: FPGA: Recv ZSGSRD 30886
17-03-18 02:25:26.844 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:26.844 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:26.844 -07 000000501 INF: FPGA: Recv ZSGSRD 30888
17-03-18 02:25:26.854 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:26.854 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:26.854 -07 000000626 INF: FPGA: Recv ZSGSRD 30898
17-03-18 02:25:26.864 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:26.864 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:26.864 -07 000000424 INF: FPGA: Recv ZSGSRD 30890
17-03-18 02:25:26.874 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:26.874 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:25:26.874 -07 000000501 INF: FPGA: Recv ZPIEZORD 26745
17-03-18 02:25:26.884 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:26.884 -07 000000591 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.625 V. Piezo Error = -9.1 V.
17-03-18 02:25:26.884 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30891 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30890 (-138.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30886 (-137.9 uncal um), Max = 30898 (-138.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:25:26.884 -07 000000591 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30891, posNoise = 7, negNoise = 5
17-03-18 02:25:26.884 -07 000000591 INF: Z Motor: After move to -0.138764, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:25:26.884 -07 000000591 INF: Z Motor: Settle wait time = 1458 ms, measure time = 107 ms (allowed 150 ms), total time = 1565 ms
17-03-18 02:25:26.884 -07 000000591 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:25:26.934 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 02:25:26.934 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:25:26.934 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:25:26.934 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:25:26.934 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:25:26.934 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:25:26.934 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:25:26.934 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:25:26.934 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:25:26.944 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:25:26.944 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:25:26.944 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:25:26.954 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:25:26.954 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:25:26.974 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:25:27.024 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 02:25:27.324 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 02:25:27.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 02:25:27.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:25:27.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 02:25:27.354 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:25:27.354 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 02:25:27.354 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 403 ms overall
17-03-18 02:25:27.434 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:25:27.434 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:27.434 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:25:27.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:25:27.454 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:25:27.454 -07 000000430 INF: Autofocus start
17-03-18 02:25:27.454 -07 000000430 INF: MeasureProfile start
17-03-18 02:25:27.454 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:25:27.464 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:25:27.474 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:25:27.474 -07 000000430 INF: MeasureProfile done
17-03-18 02:25:27.474 -07 000000430 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:25:27.474 -07 000000430 INF: Autofocus finished
17-03-18 02:25:27.674 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:25:27.674 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 215 ms overall
17-03-18 02:25:27.684 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.138773689282273. ----------
17-03-18 02:25:27.684 -07 000000610 INF: Cycle	99	Tile	4	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:25:27.684 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28808, sync = True, waitForSettling = True)
17-03-18 02:25:27.684 -07 000000610 INF: Z Motor: Moving to -0.131875 mm, started at -0.138774 mm, distance = 6.90 um
17-03-18 02:25:27.684 -07 000000610 INF: FPGA: Xmit ZDACW 28808\n [Z Motor]
17-03-18 02:25:27.684 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:25:27.694 -07 000000610 INF: FPGA: 'ZDACW 28808' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:25:27.694 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:25:27.694 -07 000000462 INF: FPGA: Recv ZDACR 28808
17-03-18 02:25:27.704 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:27.704 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:25:27.784 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 4.008536,
17-03-18 02:25:27.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:27.854 -07 000000576 INF: FPGA: Recv ZSGSRD 29815
17-03-18 02:25:27.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:27.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:27.864 -07 000000501 INF: FPGA: Recv ZSGSRD 29819
17-03-18 02:25:27.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:27.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:27.874 -07 000000590 INF: FPGA: Recv ZSGSRD 29813
17-03-18 02:25:27.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:27.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:27.884 -07 000000561 INF: FPGA: Recv ZSGSRD 29821
17-03-18 02:25:27.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:27.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:27.894 -07 000000569 INF: FPGA: Recv ZSGSRD 29821
17-03-18 02:25:27.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:27.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:27.904 -07 000000467 INF: FPGA: Recv ZSGSRD 29815
17-03-18 02:25:27.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:27.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:27.914 -07 000000512 INF: FPGA: Recv ZSGSRD 29817
17-03-18 02:25:27.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:27.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:27.924 -07 000000502 INF: FPGA: Recv ZSGSRD 29816
17-03-18 02:25:27.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:27.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:27.934 -07 000000462 INF: FPGA: Recv ZSGSRD 29816
17-03-18 02:25:27.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:27.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:27.944 -07 000000444 INF: FPGA: Recv ZSGSRD 29819
17-03-18 02:25:27.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:27.954 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:25:27.954 -07 000000591 INF: FPGA: Recv ZPIEZORD 25312
17-03-18 02:25:27.964 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:27.964 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.396 V. Piezo Error = -9.9 V.
17-03-18 02:25:27.964 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29817 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29816 (-131.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29813 (-131.1 uncal um), Max = 29821 (-131.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:25:27.964 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29817, posNoise = 4, negNoise = 4
17-03-18 02:25:27.964 -07 000000610 INF: Z Motor: After move to -0.131875, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:25:27.964 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 02:25:27.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:25:27.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:25:27.964 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:25:27.964 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:25:27.964 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:25:27.964 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:25:27.964 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:25:27.964 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:25:27.964 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:25:27.964 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:25:27.964 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:25:27.964 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:25:27.974 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:25:27.974 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:25:27.974 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:25:27.974 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:25:27.984 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 02:25:27.984 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:25:27.984 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 02:25:27.984 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:25:27.984 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28984 150\n [Camera]
17-03-18 02:25:28.194 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:25:28.584 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:25:28.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:25:28.584 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:25:28.584 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:25:28.584 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 02:25:28.584 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:25:28.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:25:28.584 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:25:28.584 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:25:28.584 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 02:25:28.774 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28984 782
17-03-18 02:25:28.924 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:25:28.974 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 02:25:28.974 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:25:28.974 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:28.974 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 02:25:28.974 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:25:28.974 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:28.984 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:25:28.984 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:25:28.984 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:25:28.984 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:25:29.114 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:25:29.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:25:29.124 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:25:29.124 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:25:29.124 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 02:25:29.124 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:25:29.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:25:29.124 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:25:29.124 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:25:29.124 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 02:25:29.304 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:25:29.304 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:25:29.304 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28984 150' command took 2 ms to send, 1309 ms to get response, and 1319 ms overall
17-03-18 02:25:29.314 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:25:29.314 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.131874085442021. ------
17-03-18 02:25:29.444 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13854 mm
17-03-18 02:25:29.444 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:25:29.444 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:25:29.444 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:25:29.444 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 02:25:29.444 -07 000000626 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 02:25:29.444 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 30265, sync = True, waitForSettling = False)
17-03-18 02:25:29.444 -07 000000576 INF: Z Motor: Moving to -0.138544 mm, started at -0.131874 mm, distance = -6.67 um
17-03-18 02:25:29.454 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:25:29.454 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:29.454 -07 000000502 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:25:29.464 -07 000000576 INF: FPGA: Xmit ZDACW 30265\n [Z Motor]
17-03-18 02:25:29.464 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:25:29.464 -07 000000626 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:29.464 -07 000000626 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:25:29.464 -07 000000626 INF: Y Motor: Moving 1339 steps-15
17-03-18 02:25:29.464 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:25:29.474 -07 000000576 INF: FPGA: 'ZDACW 30265' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:25:29.474 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:25:29.484 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:25:29.494 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:25:29.494 -07 000000461 INF: FPGA: Recv ZDACR 30265
17-03-18 02:25:29.504 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:25:29.504 -07 000000576 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 02:25:29.524 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:25:29.524 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:25:29.524 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:29.524 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 02:25:29.524 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:25:29.524 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:29.524 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 02:25:29.524 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:25:29.534 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:25:29.534 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:25:29.674 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:25:29.674 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 226 ms overall
17-03-18 02:25:29.854 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 02:25:29.854 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:25:29.904 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:29.904 -07 000000618 INF: FPGA: Recv YRDPOS 129482
17-03-18 02:25:29.914 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:25:29.914 -07 000000626 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:29.914 -07 000000626 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 02:25:29.914 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.109 mm/sec
17-03-18 02:25:30.864 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:30.864 -07 000000424 INF: FPGA: Recv YRDPOS 129483
17-03-18 02:25:30.874 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:30.874 -07 000000626 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:30.894 -07 000000626 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:25:30.894 -07 000000626 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:25:30.894 -07 000000626 INF: Y Motor: Moved to 63.2241 after 1451 ms (table move)
17-03-18 02:25:30.904 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138544 mm (DAC = 30265)
17-03-18 02:25:30.904 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:30.904 -07 000000618 INF: FPGA: Recv ZSGSRD 30862
17-03-18 02:25:30.914 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:25:30.914 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:30.914 -07 000000606 INF: FPGA: Recv ZSGSRD 30851
17-03-18 02:25:30.924 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:25:30.924 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:30.924 -07 000000467 INF: FPGA: Recv ZSGSRD 30856
17-03-18 02:25:30.934 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:30.934 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:30.934 -07 000000618 INF: FPGA: Recv ZSGSRD 30864
17-03-18 02:25:30.944 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:30.944 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:30.944 -07 000000444 INF: FPGA: Recv ZSGSRD 30853
17-03-18 02:25:30.954 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:30.954 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:30.954 -07 000000502 INF: FPGA: Recv ZSGSRD 30862
17-03-18 02:25:30.964 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:30.964 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:30.964 -07 000000606 INF: FPGA: Recv ZSGSRD 30856
17-03-18 02:25:30.974 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:30.974 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:30.974 -07 000000569 INF: FPGA: Recv ZSGSRD 30846
17-03-18 02:25:30.984 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:30.984 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:30.984 -07 000000579 INF: FPGA: Recv ZSGSRD 30854
17-03-18 02:25:30.994 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:30.994 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:30.994 -07 000000501 INF: FPGA: Recv ZSGSRD 30850
17-03-18 02:25:31.004 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:31.004 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:25:31.004 -07 000000502 INF: FPGA: Recv ZPIEZORD 26697
17-03-18 02:25:31.014 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:31.014 -07 000000512 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.618 V. Piezo Error = -9.1 V.
17-03-18 02:25:31.014 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30855 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30855 (-137.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30846 (-137.7 uncal um), Max = 30864 (-137.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:25:31.014 -07 000000512 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30855, posNoise = 9, negNoise = 9
17-03-18 02:25:31.014 -07 000000512 INF: Z Motor: After move to -0.138544, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:25:31.014 -07 000000512 INF: Z Motor: Settle wait time = 1454 ms, measure time = 108 ms (allowed 150 ms), total time = 1562 ms
17-03-18 02:25:31.014 -07 000000512 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:25:31.064 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 02:25:31.064 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:25:31.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:25:31.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:25:31.064 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:25:31.064 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:25:31.064 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:25:31.064 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:25:31.064 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:25:31.064 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:25:31.074 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:25:31.074 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:25:31.074 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:25:31.074 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:25:31.084 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:25:31.124 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:25:31.424 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:25:31.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:25:31.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:25:31.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:25:31.464 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:25:31.464 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 02:25:31.464 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:25:31.474 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:25:31.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:25:31.544 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:31.544 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:25:31.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:25:31.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:25:31.564 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:25:31.564 -07 000000606 INF: Autofocus start
17-03-18 02:25:31.564 -07 000000606 INF: MeasureProfile start
17-03-18 02:25:31.564 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:25:31.574 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:25:31.574 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:25:31.574 -07 000000606 INF: MeasureProfile done
17-03-18 02:25:31.574 -07 000000606 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:25:31.574 -07 000000606 INF: Autofocus finished
17-03-18 02:25:31.774 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:25:31.774 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:25:31.774 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.138542417645169. ----------
17-03-18 02:25:31.774 -07 000000610 INF: Cycle	99	Tile	5	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:25:31.784 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28789, sync = True, waitForSettling = True)
17-03-18 02:25:31.784 -07 000000610 INF: Z Motor: Moving to -0.131788 mm, started at -0.138542 mm, distance = 6.75 um
17-03-18 02:25:31.784 -07 000000610 INF: FPGA: Xmit ZDACW 28789\n [Z Motor]
17-03-18 02:25:31.784 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:25:31.794 -07 000000610 INF: FPGA: 'ZDACW 28789' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:25:31.794 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:25:31.794 -07 000000579 INF: FPGA: Recv ZDACR 28789
17-03-18 02:25:31.804 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:31.804 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:25:31.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:31.954 -07 000000590 INF: FPGA: Recv ZSGSRD 29807
17-03-18 02:25:31.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:25:31.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:31.964 -07 000000502 INF: FPGA: Recv ZSGSRD 29806
17-03-18 02:25:31.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:31.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:31.984 -07 000000455 INF: FPGA: Recv ZSGSRD 29804
17-03-18 02:25:31.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:25:31.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:31.994 -07 000000576 INF: FPGA: Recv ZSGSRD 29808
17-03-18 02:25:32.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:32.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:32.004 -07 000000591 INF: FPGA: Recv ZSGSRD 29805
17-03-18 02:25:32.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:32.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:32.014 -07 000000424 INF: FPGA: Recv ZSGSRD 29803
17-03-18 02:25:32.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:32.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:32.024 -07 000000626 INF: FPGA: Recv ZSGSRD 29804
17-03-18 02:25:32.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:32.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:32.034 -07 000000618 INF: FPGA: Recv ZSGSRD 29807
17-03-18 02:25:32.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:32.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:32.044 -07 000000501 INF: FPGA: Recv ZSGSRD 29806
17-03-18 02:25:32.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:32.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:32.054 -07 000000579 INF: FPGA: Recv ZSGSRD 29802
17-03-18 02:25:32.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:32.064 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:25:32.064 -07 000000424 INF: FPGA: Recv ZPIEZORD 25328
17-03-18 02:25:32.074 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:32.074 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.393 V. Piezo Error = -9.8 V.
17-03-18 02:25:32.074 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29805 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29806 (-131.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29802 (-131.0 uncal um), Max = 29808 (-131.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:25:32.074 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29805, posNoise = 3, negNoise = 3
17-03-18 02:25:32.074 -07 000000610 INF: Z Motor: After move to -0.131788, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:25:32.074 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 02:25:32.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:25:32.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:25:32.074 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:25:32.074 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:25:32.074 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:25:32.074 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:25:32.074 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:25:32.074 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:25:32.074 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:25:32.074 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:25:32.074 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:25:32.074 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:25:32.084 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:25:32.084 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:25:32.084 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:25:32.084 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:25:32.094 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:25:32.094 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:25:32.094 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:25:32.094 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:25:32.094 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28966 150\n [Camera]
17-03-18 02:25:32.294 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:25:32.684 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:25:32.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:25:32.684 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:25:32.694 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:25:32.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:25:32.694 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:25:32.694 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:25:32.694 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:25:32.704 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:25:32.704 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:25:32.884 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28966 780
17-03-18 02:25:33.034 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:25:33.094 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 02:25:33.094 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:25:33.094 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:33.094 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 02:25:33.094 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:25:33.094 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:33.094 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:25:33.094 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 02:25:33.094 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:25:33.104 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:25:33.144 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 4.011254,
17-03-18 02:25:33.224 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1122
17-03-18 02:25:33.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1122
17-03-18 02:25:33.224 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:25:33.224 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1122
17-03-18 02:25:33.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1122
17-03-18 02:25:33.224 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:25:33.224 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:25:33.224 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:25:33.354 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:25:33.354 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:25:33.414 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:25:33.414 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:25:33.414 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28966 150' command took 2 ms to send, 1313 ms to get response, and 1320 ms overall
17-03-18 02:25:33.414 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:25:33.414 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.13179699489632. ------
17-03-18 02:25:33.414 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:25:33.414 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13788 mm
17-03-18 02:25:33.414 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:25:33.424 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 02:25:33.424 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 30120, sync = True, waitForSettling = False)
17-03-18 02:25:33.424 -07 000000467 INF: Z Motor: Moving to -0.137881 mm, started at -0.131797 mm, distance = -6.08 um
17-03-18 02:25:33.424 -07 000000467 INF: FPGA: Xmit ZDACW 30120\n [Z Motor]
17-03-18 02:25:33.424 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:25:33.424 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:25:33.424 -07 000000502 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 02:25:33.424 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:25:33.434 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:33.434 -07 000000467 INF: FPGA: 'ZDACW 30120' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:25:33.434 -07 000000462 INF: FPGA: Recv YRDPOS 129484
17-03-18 02:25:33.444 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:25:33.444 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:25:33.444 -07 000000502 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:33.444 -07 000000502 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:25:33.444 -07 000000502 INF: Y Motor: Moving 1341 steps-18
17-03-18 02:25:33.454 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:25:33.454 -07 000000576 INF: FPGA: Recv ZDACR 30120
17-03-18 02:25:33.464 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:25:33.464 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:25:33.464 -07 000000467 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 02:25:33.624 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 02:25:33.624 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:25:33.624 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:33.624 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:25:33.634 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 02:25:33.644 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:25:33.644 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 02:25:33.744 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:25:33.744 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:25:33.744 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:33.754 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:25:33.754 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 526 ms.
17-03-18 02:25:33.834 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 02:25:33.834 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 02:25:33.884 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:33.884 -07 000000629 INF: FPGA: Recv YRDPOS 131188
17-03-18 02:25:33.894 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:25:33.894 -07 000000502 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:33.894 -07 000000502 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-18 02:25:33.894 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.838 mm, average velocity = 2.128 mm/sec
17-03-18 02:25:34.844 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:34.844 -07 000000618 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:25:34.854 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:25:34.854 -07 000000502 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:34.874 -07 000000502 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:25:34.874 -07 000000502 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:25:34.874 -07 000000502 INF: Y Motor: Moved to 64.0571 after 1452 ms (table move)
17-03-18 02:25:34.874 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137881 mm (DAC = 30120)
17-03-18 02:25:34.874 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:34.884 -07 000000591 INF: FPGA: Recv ZSGSRD 30764
17-03-18 02:25:34.884 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 02:25:34.884 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:34.884 -07 000000461 INF: FPGA: Recv ZSGSRD 30750
17-03-18 02:25:34.894 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:25:34.894 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:34.894 -07 000000444 INF: FPGA: Recv ZSGSRD 30751
17-03-18 02:25:34.904 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:34.904 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:34.904 -07 000000569 INF: FPGA: Recv ZSGSRD 30758
17-03-18 02:25:34.914 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:34.914 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:34.914 -07 000000576 INF: FPGA: Recv ZSGSRD 30748
17-03-18 02:25:34.924 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:34.924 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:34.924 -07 000000626 INF: FPGA: Recv ZSGSRD 30758
17-03-18 02:25:34.934 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:34.934 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:34.934 -07 000000461 INF: FPGA: Recv ZSGSRD 30758
17-03-18 02:25:34.944 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:34.944 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:34.944 -07 000000512 INF: FPGA: Recv ZSGSRD 30745
17-03-18 02:25:34.954 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:34.954 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:34.954 -07 000000430 INF: FPGA: Recv ZSGSRD 30756
17-03-18 02:25:34.964 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:34.964 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:34.964 -07 000000576 INF: FPGA: Recv ZSGSRD 30748
17-03-18 02:25:34.974 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:34.974 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:25:34.974 -07 000000626 INF: FPGA: Recv ZPIEZORD 26568
17-03-18 02:25:34.984 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:34.984 -07 000000455 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.596 V. Piezo Error = -9.2 V.
17-03-18 02:25:34.984 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30754 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30754 (-137.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30745 (-137.0 uncal um), Max = 30764 (-137.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:25:34.984 -07 000000455 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30754, posNoise = 10, negNoise = 9
17-03-18 02:25:34.984 -07 000000455 INF: Z Motor: After move to -0.137881, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:25:34.984 -07 000000455 INF: Z Motor: Settle wait time = 1457 ms, measure time = 102 ms (allowed 150 ms), total time = 1559 ms
17-03-18 02:25:34.984 -07 000000455 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 02:25:35.034 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 02:25:35.034 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:25:35.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:25:35.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:25:35.034 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:25:35.034 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:25:35.034 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:25:35.034 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:25:35.044 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:25:35.044 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:25:35.044 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:25:35.044 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:25:35.054 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:25:35.054 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:25:35.054 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:25:35.094 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:25:35.394 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:25:35.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:25:35.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:25:35.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:25:35.434 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:25:35.434 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 02:25:35.434 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:25:35.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:25:35.514 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:35.514 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:25:35.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:25:35.534 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:25:35.534 -07 000000590 INF: Autofocus start
17-03-18 02:25:35.534 -07 000000590 INF: MeasureProfile start
17-03-18 02:25:35.544 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:25:35.544 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:25:35.544 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:25:35.554 -07 000000590 INF: MeasureProfile done
17-03-18 02:25:35.554 -07 000000590 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:25:35.554 -07 000000590 INF: Autofocus finished
17-03-18 02:25:35.744 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:25:35.744 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:25:35.744 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.137893572218851. ----------
17-03-18 02:25:35.754 -07 000000610 INF: Cycle	99	Tile	6	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:25:35.754 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28645, sync = True, waitForSettling = True)
17-03-18 02:25:35.754 -07 000000610 INF: Z Motor: Moving to -0.131128 mm, started at -0.137894 mm, distance = 6.77 um
17-03-18 02:25:35.754 -07 000000610 INF: FPGA: Xmit ZDACW 28645\n [Z Motor]
17-03-18 02:25:35.754 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:25:35.764 -07 000000610 INF: FPGA: 'ZDACW 28645' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:25:35.764 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:25:35.764 -07 000000618 INF: FPGA: Recv ZDACR 28645
17-03-18 02:25:35.774 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:35.774 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:25:35.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:35.924 -07 000000467 INF: FPGA: Recv ZSGSRD 29698
17-03-18 02:25:35.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:35.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:35.934 -07 000000606 INF: FPGA: Recv ZSGSRD 29706
17-03-18 02:25:35.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:35.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:35.944 -07 000000561 INF: FPGA: Recv ZSGSRD 29698
17-03-18 02:25:35.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:35.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:35.954 -07 000000579 INF: FPGA: Recv ZSGSRD 29698
17-03-18 02:25:35.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:35.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:35.964 -07 000000462 INF: FPGA: Recv ZSGSRD 29705
17-03-18 02:25:35.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:35.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:35.974 -07 000000591 INF: FPGA: Recv ZSGSRD 29703
17-03-18 02:25:35.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:35.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:35.984 -07 000000502 INF: FPGA: Recv ZSGSRD 29706
17-03-18 02:25:35.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:35.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:35.994 -07 000000569 INF: FPGA: Recv ZSGSRD 29694
17-03-18 02:25:36.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:36.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:36.004 -07 000000576 INF: FPGA: Recv ZSGSRD 29703
17-03-18 02:25:36.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:36.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:36.014 -07 000000629 INF: FPGA: Recv ZSGSRD 29705
17-03-18 02:25:36.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:36.024 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:25:36.024 -07 000000461 INF: FPGA: Recv ZPIEZORD 25184
17-03-18 02:25:36.034 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:36.034 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.371 V. Piezo Error = -9.9 V.
17-03-18 02:25:36.034 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29702 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29703 (-130.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29694 (-130.3 uncal um), Max = 29706 (-130.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:25:36.034 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29702, posNoise = 4, negNoise = 8
17-03-18 02:25:36.034 -07 000000610 INF: Z Motor: After move to -0.131128, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:25:36.034 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:25:36.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:25:36.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:25:36.034 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:25:36.034 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:25:36.034 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:25:36.034 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:25:36.034 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:25:36.034 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:25:36.034 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:25:36.034 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:25:36.034 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:25:36.034 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:25:36.044 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:25:36.044 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:25:36.044 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:25:36.044 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:25:36.054 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:25:36.054 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:25:36.054 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:25:36.054 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:25:36.054 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28821 150\n [Camera]
17-03-18 02:25:36.254 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:25:36.474 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:25:36.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:25:36.644 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:25:36.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:25:36.644 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:25:36.654 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:25:36.654 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:25:36.654 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:25:36.654 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:25:36.654 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:25:36.654 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:25:36.654 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:25:36.844 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28821 780
17-03-18 02:25:36.994 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:25:37.034 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 02:25:37.034 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 02:25:37.034 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:37.034 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 02:25:37.034 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:25:37.034 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:37.044 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:25:37.044 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:25:37.044 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:25:37.044 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:25:37.184 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1122
17-03-18 02:25:37.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1122
17-03-18 02:25:37.184 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:25:37.184 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1122
17-03-18 02:25:37.184 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:25:37.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1122
17-03-18 02:25:37.184 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1145266312, 0x0, 391868352) start.
17-03-18 02:25:37.184 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:25:37.184 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:25:37.184 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:25:37.374 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:25:37.374 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:25:37.374 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28821 150' command took 2 ms to send, 1313 ms to get response, and 1320 ms overall
17-03-18 02:25:37.374 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:25:37.374 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131135301045719. ------
17-03-18 02:25:37.374 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:25:37.374 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13764 mm
17-03-18 02:25:37.374 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:25:37.384 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:25:37.384 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 02:25:37.384 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 30067, sync = True, waitForSettling = False)
17-03-18 02:25:37.384 -07 000000606 INF: Z Motor: Moving to -0.137638 mm, started at -0.131135 mm, distance = -6.50 um
17-03-18 02:25:37.384 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:25:37.384 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 02:25:37.384 -07 000000444 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 02:25:37.394 -07 000000606 INF: FPGA: Xmit ZDACW 30067\n [Z Motor]
17-03-18 02:25:37.394 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:25:37.404 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:37.404 -07 000000606 INF: FPGA: 'ZDACW 30067' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:25:37.404 -07 000000590 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:25:37.414 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:25:37.414 -07 000000444 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:37.414 -07 000000444 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:25:37.414 -07 000000444 INF: Y Motor: Moving 1337 steps-12
17-03-18 02:25:37.414 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:25:37.424 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:25:37.424 -07 000000590 INF: FPGA: Recv ZDACR 30067
17-03-18 02:25:37.434 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:25:37.434 -07 000000606 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 02:25:37.584 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:25:37.584 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 02:25:37.584 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1145266312, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 02:25:37.594 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:25:37.594 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:37.594 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 02:25:37.594 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 02:25:37.594 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:37.594 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:25:37.594 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 02:25:37.594 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:25:37.604 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 02:25:37.784 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 02:25:37.784 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 02:25:37.834 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:37.834 -07 000000590 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:25:37.844 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:25:37.844 -07 000000444 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:37.844 -07 000000444 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:25:37.844 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.835 mm, average velocity = 2.210 mm/sec
17-03-18 02:25:38.504 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 4.005817,
17-03-18 02:25:38.794 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:38.794 -07 000000467 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:25:38.804 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:38.804 -07 000000444 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:38.824 -07 000000444 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:25:38.824 -07 000000444 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:25:38.824 -07 000000444 INF: Y Motor: Moved to 64.8789 after 1444 ms (table move)
17-03-18 02:25:38.834 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137638 mm (DAC = 30067)
17-03-18 02:25:38.834 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:38.834 -07 000000502 INF: FPGA: Recv ZSGSRD 30721
17-03-18 02:25:38.844 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:25:38.844 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:38.844 -07 000000591 INF: FPGA: Recv ZSGSRD 30722
17-03-18 02:25:38.854 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:38.854 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:38.854 -07 000000512 INF: FPGA: Recv ZSGSRD 30717
17-03-18 02:25:38.864 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:38.864 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:38.864 -07 000000590 INF: FPGA: Recv ZSGSRD 30722
17-03-18 02:25:38.874 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:38.874 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:38.874 -07 000000430 INF: FPGA: Recv ZSGSRD 30720
17-03-18 02:25:38.884 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:38.884 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:38.884 -07 000000444 INF: FPGA: Recv ZSGSRD 30715
17-03-18 02:25:38.894 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:38.894 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:38.894 -07 000000626 INF: FPGA: Recv ZSGSRD 30717
17-03-18 02:25:38.904 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:38.904 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:38.904 -07 000000512 INF: FPGA: Recv ZSGSRD 30706
17-03-18 02:25:38.914 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:38.914 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:38.914 -07 000000590 INF: FPGA: Recv ZSGSRD 30711
17-03-18 02:25:38.924 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:38.924 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:38.924 -07 000000606 INF: FPGA: Recv ZSGSRD 30716
17-03-18 02:25:38.934 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:38.934 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:25:38.934 -07 000000576 INF: FPGA: Recv ZPIEZORD 26575
17-03-18 02:25:38.944 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:38.944 -07 000000618 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.588 V. Piezo Error = -9.1 V.
17-03-18 02:25:38.944 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30717 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30717 (-136.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30706 (-136.8 uncal um), Max = 30722 (-136.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 02:25:38.944 -07 000000618 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30717, posNoise = 5, negNoise = 11
17-03-18 02:25:38.944 -07 000000618 INF: Z Motor: After move to -0.137638, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:25:38.944 -07 000000618 INF: Z Motor: Settle wait time = 1449 ms, measure time = 108 ms (allowed 150 ms), total time = 1557 ms
17-03-18 02:25:38.944 -07 000000618 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:25:38.994 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 02:25:38.994 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:25:38.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:25:38.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:25:38.994 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:25:38.994 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:25:38.994 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:25:38.994 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:25:38.994 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:25:38.994 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:25:39.004 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:25:39.004 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:25:39.014 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:25:39.014 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:25:39.014 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:25:39.054 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:25:39.354 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:25:39.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:25:39.354 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:25:39.354 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1116030168, 0x0, 559484976) start.
17-03-18 02:25:39.394 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:25:39.394 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 02:25:39.394 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:25:39.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1116030168, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:25:39.474 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:39.474 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:25:39.474 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:25:39.494 -07 000000430 INF: Autofocus start
17-03-18 02:25:39.494 -07 000000430 INF: MeasureProfile start
17-03-18 02:25:39.494 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:25:39.494 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:25:39.504 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:25:39.504 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:25:39.504 -07 000000430 INF: MeasureProfile done
17-03-18 02:25:39.504 -07 000000430 INF: X=4  Z correction [um]=-0.004706759
17-03-18 02:25:39.504 -07 000000430 INF: Autofocus finished
17-03-18 02:25:39.704 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:25:39.704 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:25:39.704 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.137655876369606. ----------
17-03-18 02:25:39.704 -07 000000610 INF: Cycle	99	Tile	7	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:25:39.714 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28578, sync = True, waitForSettling = True)
17-03-18 02:25:39.714 -07 000000610 INF: Z Motor: Moving to -0.130822 mm, started at -0.137656 mm, distance = 6.83 um
17-03-18 02:25:39.714 -07 000000610 INF: FPGA: Xmit ZDACW 28578\n [Z Motor]
17-03-18 02:25:39.714 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:25:39.724 -07 000000610 INF: FPGA: 'ZDACW 28578' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:25:39.724 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:25:39.724 -07 000000512 INF: FPGA: Recv ZDACR 28578
17-03-18 02:25:39.734 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:39.734 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:25:39.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:39.884 -07 000000467 INF: FPGA: Recv ZSGSRD 29656
17-03-18 02:25:39.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:25:39.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:39.894 -07 000000502 INF: FPGA: Recv ZSGSRD 29657
17-03-18 02:25:39.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:39.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:39.904 -07 000000618 INF: FPGA: Recv ZSGSRD 29651
17-03-18 02:25:39.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:39.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:39.914 -07 000000501 INF: FPGA: Recv ZSGSRD 29650
17-03-18 02:25:39.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:39.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:39.924 -07 000000606 INF: FPGA: Recv ZSGSRD 29655
17-03-18 02:25:39.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:25:39.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:39.934 -07 000000590 INF: FPGA: Recv ZSGSRD 29657
17-03-18 02:25:39.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:39.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:39.944 -07 000000502 INF: FPGA: Recv ZSGSRD 29654
17-03-18 02:25:39.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:39.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:39.954 -07 000000512 INF: FPGA: Recv ZSGSRD 29656
17-03-18 02:25:39.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:39.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:39.964 -07 000000424 INF: FPGA: Recv ZSGSRD 29658
17-03-18 02:25:39.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:39.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:39.974 -07 000000606 INF: FPGA: Recv ZSGSRD 29656
17-03-18 02:25:39.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:39.984 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:25:39.984 -07 000000462 INF: FPGA: Recv ZPIEZORD 25213
17-03-18 02:25:39.994 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:39.994 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.361 V. Piezo Error = -9.7 V.
17-03-18 02:25:39.994 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29655 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29656 (-130.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29650 (-130.0 uncal um), Max = 29658 (-130.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:25:39.994 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29655, posNoise = 3, negNoise = 5
17-03-18 02:25:39.994 -07 000000610 INF: Z Motor: After move to -0.130822, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:25:39.994 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:25:39.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:25:39.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:25:39.994 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:25:39.994 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:25:39.994 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:25:39.994 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:25:39.994 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:25:39.994 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:25:39.994 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:25:39.994 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:25:39.994 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:25:39.994 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:25:40.004 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:25:40.004 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:25:40.004 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:25:40.004 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:25:40.014 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 02:25:40.014 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:25:40.014 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:25:40.014 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:25:40.014 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28755 150\n [Camera]
17-03-18 02:25:40.224 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:25:40.614 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:25:40.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:25:40.614 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:25:40.614 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:25:40.614 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 02:25:40.614 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:25:40.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:25:40.614 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:25:40.614 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:25:40.614 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 02:25:40.804 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28755 780
17-03-18 02:25:40.954 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:25:41.004 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 02:25:41.004 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:25:41.004 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:41.004 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 02:25:41.004 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:25:41.004 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:41.004 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:25:41.014 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:25:41.014 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:25:41.014 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:25:41.144 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:25:41.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:25:41.144 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:25:41.274 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:25:41.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:25:41.274 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:25:41.274 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:25:41.274 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 02:25:41.284 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:25:41.284 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:25:41.334 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:25:41.334 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:25:41.344 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28755 150' command took 2 ms to send, 1309 ms to get response, and 1320 ms overall
17-03-18 02:25:41.344 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:25:41.344 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.130833363075056. ------
17-03-18 02:25:41.344 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:25:41.344 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13748 mm
17-03-18 02:25:41.344 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:25:41.344 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30032, sync = True, waitForSettling = False)
17-03-18 02:25:41.344 -07 000000462 INF: Z Motor: Moving to -0.137478 mm, started at -0.130833 mm, distance = -6.64 um
17-03-18 02:25:41.344 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 02:25:41.344 -07 000000424 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 02:25:41.344 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:25:41.354 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:25:41.354 -07 000000462 INF: FPGA: Xmit ZDACW 30032\n [Z Motor]
17-03-18 02:25:41.354 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:25:41.364 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:41.364 -07 000000462 INF: FPGA: 'ZDACW 30032' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:25:41.364 -07 000000629 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:25:41.374 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:25:41.374 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:25:41.374 -07 000000424 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:41.374 -07 000000424 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:25:41.374 -07 000000424 INF: Y Motor: Moving 1350 steps-28
17-03-18 02:25:41.384 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:25:41.384 -07 000000444 INF: FPGA: Recv ZDACR 30032
17-03-18 02:25:41.394 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:25:41.394 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:25:41.394 -07 000000462 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 02:25:41.474 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:25:41.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:25:41.574 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:25:41.574 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:25:41.674 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 02:25:41.674 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:25:41.674 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:41.674 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 02:25:41.674 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:25:41.674 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:41.684 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:25:41.684 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 534 ms.
17-03-18 02:25:41.684 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:25:41.694 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 02:25:41.764 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 02:25:41.764 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 02:25:41.814 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:41.814 -07 000000618 INF: FPGA: Recv YRDPOS 134582
17-03-18 02:25:41.824 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:25:41.824 -07 000000424 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:41.824 -07 000000424 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 02:25:41.824 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.844 mm, average velocity = 2.136 mm/sec
17-03-18 02:25:42.774 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:42.774 -07 000000461 INF: FPGA: Recv YRDPOS 134583
17-03-18 02:25:42.784 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:25:42.784 -07 000000424 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:42.804 -07 000000424 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:25:42.804 -07 000000424 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:25:42.814 -07 000000424 INF: Y Motor: Moved to 65.7144 after 1461 ms (table move)
17-03-18 02:25:42.814 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137478 mm (DAC = 30032)
17-03-18 02:25:42.814 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:42.814 -07 000000430 INF: FPGA: Recv ZSGSRD 30690
17-03-18 02:25:42.824 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:25:42.824 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:42.824 -07 000000606 INF: FPGA: Recv ZSGSRD 30692
17-03-18 02:25:42.834 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:42.834 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:42.834 -07 000000618 INF: FPGA: Recv ZSGSRD 30695
17-03-18 02:25:42.844 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:42.844 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:42.844 -07 000000512 INF: FPGA: Recv ZSGSRD 30694
17-03-18 02:25:42.854 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:42.854 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:42.854 -07 000000629 INF: FPGA: Recv ZSGSRD 30692
17-03-18 02:25:42.864 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:42.864 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:42.864 -07 000000569 INF: FPGA: Recv ZSGSRD 30685
17-03-18 02:25:42.874 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:42.874 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:42.874 -07 000000561 INF: FPGA: Recv ZSGSRD 30691
17-03-18 02:25:42.884 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:42.884 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:42.884 -07 000000618 INF: FPGA: Recv ZSGSRD 30690
17-03-18 02:25:42.894 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:42.894 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:42.894 -07 000000502 INF: FPGA: Recv ZSGSRD 30687
17-03-18 02:25:42.904 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:42.904 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:42.904 -07 000000579 INF: FPGA: Recv ZSGSRD 30692
17-03-18 02:25:42.914 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:42.914 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:25:42.914 -07 000000569 INF: FPGA: Recv ZPIEZORD 26537
17-03-18 02:25:42.924 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:42.924 -07 000000590 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.583 V. Piezo Error = -9.1 V.
17-03-18 02:25:42.924 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30691 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30692 (-136.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30685 (-136.7 uncal um), Max = 30695 (-136.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:25:42.924 -07 000000590 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30691, posNoise = 4, negNoise = 6
17-03-18 02:25:42.924 -07 000000590 INF: Z Motor: After move to -0.137478, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:25:42.924 -07 000000590 INF: Z Motor: Settle wait time = 1465 ms, measure time = 109 ms (allowed 150 ms), total time = 1574 ms
17-03-18 02:25:42.924 -07 000000590 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:25:42.974 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 02:25:42.974 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:25:42.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:25:42.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:25:42.974 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:25:42.974 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:25:42.974 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:25:42.974 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:25:42.974 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:25:42.974 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:25:42.984 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:25:42.984 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:25:42.994 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:25:42.994 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:25:42.994 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:25:43.044 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:25:43.344 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:25:43.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:25:43.344 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:25:43.344 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:25:43.384 -07 000000462 INF: FPGA: Recv @CAMSNAP 381
17-03-18 02:25:43.384 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 02:25:43.384 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 386 ms overall
17-03-18 02:25:43.454 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:25:43.454 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:43.454 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:25:43.454 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 02:25:43.484 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:25:43.484 -07 000000579 INF: Autofocus start
17-03-18 02:25:43.484 -07 000000579 INF: MeasureProfile start
17-03-18 02:25:43.484 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:25:43.494 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:25:43.494 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:25:43.494 -07 000000579 INF: MeasureProfile done
17-03-18 02:25:43.494 -07 000000579 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:25:43.494 -07 000000579 INF: Autofocus finished
17-03-18 02:25:43.694 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:25:43.694 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 02:25:43.704 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.137488846853921. ----------
17-03-18 02:25:43.704 -07 000000610 INF: Cycle	99	Tile	8	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:25:43.704 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28539, sync = True, waitForSettling = True)
17-03-18 02:25:43.704 -07 000000610 INF: Z Motor: Moving to -0.130643 mm, started at -0.137489 mm, distance = 6.85 um
17-03-18 02:25:43.704 -07 000000610 INF: FPGA: Xmit ZDACW 28539\n [Z Motor]
17-03-18 02:25:43.704 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:25:43.714 -07 000000610 INF: FPGA: 'ZDACW 28539' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:25:43.714 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:25:43.714 -07 000000579 INF: FPGA: Recv ZDACR 28539
17-03-18 02:25:43.724 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:25:43.724 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:25:43.864 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 4.001704,
17-03-18 02:25:43.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:43.874 -07 000000569 INF: FPGA: Recv ZSGSRD 29626
17-03-18 02:25:43.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:25:43.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:43.904 -07 000000455 INF: FPGA: Recv ZSGSRD 29632
17-03-18 02:25:43.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:25:43.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:43.924 -07 000000462 INF: FPGA: Recv ZSGSRD 29624
17-03-18 02:25:43.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:25:43.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:43.934 -07 000000576 INF: FPGA: Recv ZSGSRD 29629
17-03-18 02:25:43.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:43.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:43.944 -07 000000606 INF: FPGA: Recv ZSGSRD 29624
17-03-18 02:25:43.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:43.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:43.954 -07 000000576 INF: FPGA: Recv ZSGSRD 29631
17-03-18 02:25:43.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:43.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:43.964 -07 000000569 INF: FPGA: Recv ZSGSRD 29627
17-03-18 02:25:43.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:43.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:43.974 -07 000000576 INF: FPGA: Recv ZSGSRD 29622
17-03-18 02:25:43.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:43.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:43.984 -07 000000467 INF: FPGA: Recv ZSGSRD 29633
17-03-18 02:25:43.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:43.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:43.994 -07 000000618 INF: FPGA: Recv ZSGSRD 29623
17-03-18 02:25:44.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:44.004 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:25:44.004 -07 000000591 INF: FPGA: Recv ZPIEZORD 25138
17-03-18 02:25:44.014 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:44.014 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.355 V. Piezo Error = -9.8 V.
17-03-18 02:25:44.014 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29627 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29626 (-129.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29622 (-129.8 uncal um), Max = 29633 (-129.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:25:44.014 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29627, posNoise = 6, negNoise = 5
17-03-18 02:25:44.014 -07 000000610 INF: Z Motor: After move to -0.130643, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:25:44.014 -07 000000610 INF: Z Motor: MoveAbsStepped took 307 ms)
17-03-18 02:25:44.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:25:44.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:25:44.014 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:25:44.014 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:25:44.014 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:25:44.014 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:25:44.014 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:25:44.014 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:25:44.014 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 02:25:44.014 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:25:44.014 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 02:25:44.014 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:25:44.024 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:25:44.024 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:25:44.024 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:25:44.024 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:25:44.034 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:25:44.034 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:25:44.034 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:25:44.034 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:25:44.034 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28716 150\n [Camera]
17-03-18 02:25:44.234 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:25:44.624 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:25:44.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:25:44.624 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:25:44.624 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:25:44.624 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1145266312, 0x0, 391868352) start.
17-03-18 02:25:44.634 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:25:44.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:25:44.634 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:25:44.634 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:25:44.634 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 02:25:44.814 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28716 780
17-03-18 02:25:44.964 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:25:45.014 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1145266312, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 02:25:45.014 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:25:45.014 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:45.014 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 02:25:45.014 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:25:45.014 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:45.014 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:25:45.014 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:25:45.014 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:25:45.024 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:25:45.164 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:25:45.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:25:45.274 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:25:45.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:25:45.274 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:25:45.274 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:25:45.274 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:25:45.274 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) start.
17-03-18 02:25:45.274 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:25:45.274 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:25:45.354 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:25:45.354 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:25:45.354 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28716 150' command took 2 ms to send, 1312 ms to get response, and 1320 ms overall
17-03-18 02:25:45.354 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:25:45.354 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.130653485135087. ------
17-03-18 02:25:45.354 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:25:45.354 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13706 mm
17-03-18 02:25:45.354 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:25:45.364 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 02:25:45.364 -07 000000461 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-18 02:25:45.364 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:25:45.364 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 02:25:45.364 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:45.364 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29940, sync = True, waitForSettling = False)
17-03-18 02:25:45.364 -07 000000501 INF: Z Motor: Moving to -0.137057 mm, started at -0.130653 mm, distance = -6.40 um
17-03-18 02:25:45.364 -07 000000455 INF: FPGA: Recv YRDPOS 134583
17-03-18 02:25:45.374 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:25:45.374 -07 000000461 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:45.374 -07 000000461 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:25:45.374 -07 000000461 INF: Y Motor: Moving 1341 steps-18
17-03-18 02:25:45.374 -07 000000501 INF: FPGA: Xmit ZDACW 29940\n [Z Motor]
17-03-18 02:25:45.374 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:25:45.384 -07 000000501 INF: FPGA: 'ZDACW 29940' command took 3 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 02:25:45.384 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:25:45.394 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:25:45.404 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:25:45.404 -07 000000569 INF: FPGA: Recv ZDACR 29940
17-03-18 02:25:45.414 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:25:45.414 -07 000000501 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 02:25:45.584 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:25:45.584 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 02:25:45.684 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 02:25:45.684 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 02:25:45.684 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:45.684 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 02:25:45.684 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:25:45.684 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:45.684 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:25:45.684 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:25:45.684 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 02:25:45.694 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 02:25:45.764 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 02:25:45.764 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 02:25:45.814 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:45.814 -07 000000590 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:25:45.824 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:25:45.824 -07 000000461 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:45.824 -07 000000461 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:25:45.824 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.122 mm/sec
17-03-18 02:25:46.474 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:25:46.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:25:46.774 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:46.774 -07 000000455 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:25:46.784 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:25:46.784 -07 000000461 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:46.804 -07 000000461 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:25:46.804 -07 000000461 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:25:46.804 -07 000000461 INF: Y Motor: Moved to 66.5391 after 1447 ms (table move)
17-03-18 02:25:46.814 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137057 mm (DAC = 29940)
17-03-18 02:25:46.814 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:46.814 -07 000000626 INF: FPGA: Recv ZSGSRD 30633
17-03-18 02:25:46.824 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:25:46.824 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:46.824 -07 000000455 INF: FPGA: Recv ZSGSRD 30619
17-03-18 02:25:46.834 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:46.834 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:46.834 -07 000000430 INF: FPGA: Recv ZSGSRD 30627
17-03-18 02:25:46.844 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:46.844 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:46.844 -07 000000576 INF: FPGA: Recv ZSGSRD 30630
17-03-18 02:25:46.854 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:46.854 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:46.854 -07 000000579 INF: FPGA: Recv ZSGSRD 30620
17-03-18 02:25:46.864 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:46.864 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:46.864 -07 000000626 INF: FPGA: Recv ZSGSRD 30620
17-03-18 02:25:46.874 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:46.874 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:46.874 -07 000000455 INF: FPGA: Recv ZSGSRD 30622
17-03-18 02:25:46.884 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:46.884 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:46.884 -07 000000501 INF: FPGA: Recv ZSGSRD 30622
17-03-18 02:25:46.894 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:46.894 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:46.894 -07 000000590 INF: FPGA: Recv ZSGSRD 30631
17-03-18 02:25:46.904 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:46.904 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:46.904 -07 000000576 INF: FPGA: Recv ZSGSRD 30627
17-03-18 02:25:46.914 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:46.914 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:25:46.914 -07 000000444 INF: FPGA: Recv ZPIEZORD 26468
17-03-18 02:25:46.924 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:46.924 -07 000000462 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.569 V. Piezo Error = -9.1 V.
17-03-18 02:25:46.924 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30625 (-136.3 uncal um), Error = 0.8 uncal um, Median = 30624 (-136.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30619 (-136.2 uncal um), Max = 30633 (-136.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:25:46.924 -07 000000462 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30625, posNoise = 8, negNoise = 6
17-03-18 02:25:46.924 -07 000000462 INF: Z Motor: After move to -0.137057, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:25:46.924 -07 000000462 INF: Z Motor: Settle wait time = 1450 ms, measure time = 107 ms (allowed 150 ms), total time = 1557 ms
17-03-18 02:25:46.924 -07 000000462 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:25:46.974 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 02:25:46.974 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:25:46.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:25:46.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:25:46.974 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:25:46.974 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:25:46.974 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:25:46.974 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:25:46.974 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:25:46.974 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:25:46.984 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:25:46.984 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:25:46.984 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:25:46.984 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:25:46.994 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:25:47.034 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:25:47.334 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:25:47.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:25:47.334 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:25:47.334 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:25:47.374 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:25:47.374 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 02:25:47.374 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:25:47.454 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:25:47.454 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:47.454 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:25:47.454 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:25:47.474 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:25:47.474 -07 000000576 INF: Autofocus start
17-03-18 02:25:47.474 -07 000000576 INF: MeasureProfile start
17-03-18 02:25:47.474 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:25:47.484 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:25:47.484 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:25:47.494 -07 000000576 INF: MeasureProfile done
17-03-18 02:25:47.494 -07 000000576 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:25:47.494 -07 000000576 INF: Autofocus finished
17-03-18 02:25:47.684 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:25:47.684 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:25:47.684 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.137064848852564. ----------
17-03-18 02:25:47.684 -07 000000610 INF: Cycle	99	Tile	9	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:25:47.694 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28447, sync = True, waitForSettling = True)
17-03-18 02:25:47.694 -07 000000610 INF: Z Motor: Moving to -0.130222 mm, started at -0.137065 mm, distance = 6.84 um
17-03-18 02:25:47.694 -07 000000610 INF: FPGA: Xmit ZDACW 28447\n [Z Motor]
17-03-18 02:25:47.694 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:25:47.704 -07 000000610 INF: FPGA: 'ZDACW 28447' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:47.704 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:25:47.704 -07 000000590 INF: FPGA: Recv ZDACR 28447
17-03-18 02:25:47.714 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:47.714 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:25:47.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:47.864 -07 000000626 INF: FPGA: Recv ZSGSRD 29562
17-03-18 02:25:47.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:25:47.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:47.874 -07 000000579 INF: FPGA: Recv ZSGSRD 29561
17-03-18 02:25:47.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:47.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:47.884 -07 000000444 INF: FPGA: Recv ZSGSRD 29561
17-03-18 02:25:47.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:47.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:47.894 -07 000000462 INF: FPGA: Recv ZSGSRD 29558
17-03-18 02:25:47.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:47.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:47.904 -07 000000424 INF: FPGA: Recv ZSGSRD 29567
17-03-18 02:25:47.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:47.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:47.914 -07 000000455 INF: FPGA: Recv ZSGSRD 29555
17-03-18 02:25:47.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:47.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:47.924 -07 000000461 INF: FPGA: Recv ZSGSRD 29559
17-03-18 02:25:47.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:47.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:47.934 -07 000000629 INF: FPGA: Recv ZSGSRD 29567
17-03-18 02:25:47.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:47.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:47.944 -07 000000626 INF: FPGA: Recv ZSGSRD 29560
17-03-18 02:25:47.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:47.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:47.954 -07 000000579 INF: FPGA: Recv ZSGSRD 29559
17-03-18 02:25:47.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:47.964 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:25:47.964 -07 000000430 INF: FPGA: Recv ZPIEZORD 25095
17-03-18 02:25:47.974 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:47.974 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.341 V. Piezo Error = -9.8 V.
17-03-18 02:25:47.974 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29561 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29560 (-129.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29555 (-129.4 uncal um), Max = 29567 (-129.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:25:47.974 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29561, posNoise = 6, negNoise = 6
17-03-18 02:25:47.974 -07 000000610 INF: Z Motor: After move to -0.130222, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:25:47.974 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:25:47.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:25:47.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:25:47.974 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:25:47.974 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:25:47.974 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:25:47.974 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:25:47.974 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:25:47.974 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:25:47.974 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:25:47.974 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:25:47.974 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:25:47.974 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:25:47.974 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:25:47.974 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:25:47.984 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:25:47.984 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:25:47.994 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 02:25:47.994 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:25:47.994 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 02:25:47.994 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:25:47.994 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28624 150\n [Camera]
17-03-18 02:25:48.194 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:25:48.594 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:25:48.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:25:48.594 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:25:48.594 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:25:48.594 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:25:48.594 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:25:48.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:25:48.594 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:25:48.594 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:25:48.594 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:25:48.784 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28624 780
17-03-18 02:25:48.934 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:25:48.974 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:25:48.974 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 02:25:48.974 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:48.974 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 02:25:48.974 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:25:48.974 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:48.974 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:25:48.984 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:25:48.984 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:25:48.984 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:25:49.124 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:25:49.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:25:49.124 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:25:49.244 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:25:49.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:25:49.244 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:25:49.244 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:25:49.244 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) start.
17-03-18 02:25:49.244 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:25:49.244 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:25:49.254 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 3.977204,
17-03-18 02:25:49.314 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:25:49.314 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:25:49.314 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28624 150' command took 2 ms to send, 1308 ms to get response, and 1319 ms overall
17-03-18 02:25:49.324 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:25:49.324 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.130229487133731. ------
17-03-18 02:25:49.324 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:25:49.324 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13706 mm
17-03-18 02:25:49.324 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:25:49.324 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 02:25:49.324 -07 000000579 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 02:25:49.324 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:25:49.324 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 29941, sync = True, waitForSettling = False)
17-03-18 02:25:49.324 -07 000000618 INF: Z Motor: Moving to -0.137061 mm, started at -0.130229 mm, distance = -6.83 um
17-03-18 02:25:49.334 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:25:49.334 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:49.334 -07 000000461 INF: FPGA: Recv YRDPOS 136273
17-03-18 02:25:49.344 -07 000000579 INF: FPGA: 'YRDPOS' command took 2 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:25:49.344 -07 000000579 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:49.344 -07 000000618 INF: FPGA: Xmit ZDACW 29941\n [Z Motor]
17-03-18 02:25:49.344 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:25:49.344 -07 000000579 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:25:49.344 -07 000000579 INF: Y Motor: Moving 1349 steps-28
17-03-18 02:25:49.354 -07 000000618 INF: FPGA: 'ZDACW 29941' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:25:49.354 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:25:49.364 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:25:49.374 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:25:49.374 -07 000000590 INF: FPGA: Recv ZDACR 29941
17-03-18 02:25:49.384 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 02:25:49.384 -07 000000618 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 02:25:49.554 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:25:49.554 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 02:25:49.644 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:25:49.644 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:25:49.644 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:49.644 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:25:49.644 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:25:49.644 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:49.654 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:25:49.654 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 02:25:49.654 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:25:49.654 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:25:49.734 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 02:25:49.734 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 02:25:49.784 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:49.784 -07 000000618 INF: FPGA: Recv YRDPOS 137978
17-03-18 02:25:49.794 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:25:49.794 -07 000000579 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:49.794 -07 000000579 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 02:25:49.794 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.146 mm/sec
17-03-18 02:25:50.744 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:50.744 -07 000000430 INF: FPGA: Recv YRDPOS 137978
17-03-18 02:25:50.754 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:25:50.754 -07 000000579 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:50.774 -07 000000579 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:25:50.774 -07 000000579 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:25:50.774 -07 000000579 INF: Y Motor: Moved to 67.3721 after 1451 ms (table move)
17-03-18 02:25:50.784 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137061 mm (DAC = 29941)
17-03-18 02:25:50.784 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:50.784 -07 000000618 INF: FPGA: Recv ZSGSRD 30625
17-03-18 02:25:50.794 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:25:50.794 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:50.794 -07 000000626 INF: FPGA: Recv ZSGSRD 30627
17-03-18 02:25:50.804 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:50.804 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:50.804 -07 000000606 INF: FPGA: Recv ZSGSRD 30630
17-03-18 02:25:50.814 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:50.814 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:50.814 -07 000000467 INF: FPGA: Recv ZSGSRD 30628
17-03-18 02:25:50.824 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:50.824 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:50.824 -07 000000579 INF: FPGA: Recv ZSGSRD 30616
17-03-18 02:25:50.834 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:50.834 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:50.834 -07 000000618 INF: FPGA: Recv ZSGSRD 30622
17-03-18 02:25:50.844 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:50.844 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:50.844 -07 000000590 INF: FPGA: Recv ZSGSRD 30627
17-03-18 02:25:50.854 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:50.854 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:50.854 -07 000000591 INF: FPGA: Recv ZSGSRD 30625
17-03-18 02:25:50.864 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:50.864 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:50.864 -07 000000444 INF: FPGA: Recv ZSGSRD 30619
17-03-18 02:25:50.874 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:50.874 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:50.874 -07 000000579 INF: FPGA: Recv ZSGSRD 30629
17-03-18 02:25:50.884 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:50.884 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:25:50.884 -07 000000618 INF: FPGA: Recv ZPIEZORD 26504
17-03-18 02:25:50.894 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:50.894 -07 000000569 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.569 V. Piezo Error = -9.1 V.
17-03-18 02:25:50.894 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30625 (-136.3 uncal um), Error = 0.8 uncal um, Median = 30626 (-136.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30616 (-136.2 uncal um), Max = 30630 (-136.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:25:50.894 -07 000000569 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30625, posNoise = 5, negNoise = 9
17-03-18 02:25:50.894 -07 000000569 INF: Z Motor: After move to -0.137061, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:25:50.894 -07 000000569 INF: Z Motor: Settle wait time = 1453 ms, measure time = 109 ms (allowed 150 ms), total time = 1562 ms
17-03-18 02:25:50.894 -07 000000569 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:25:50.944 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 02:25:50.944 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:25:50.944 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:25:50.944 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:25:50.944 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:25:50.944 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:25:50.944 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:25:50.944 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:25:50.944 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:25:50.944 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:25:50.954 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:25:50.954 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:25:50.964 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:25:50.964 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:25:50.964 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:25:51.014 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:25:51.314 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:25:51.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:25:51.314 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:25:51.314 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:25:51.344 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:25:51.354 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 02:25:51.354 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 385 ms overall
17-03-18 02:25:51.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:25:51.424 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:51.424 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:25:51.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:25:51.454 -07 000000618 INF: Autofocus start
17-03-18 02:25:51.454 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:25:51.454 -07 000000618 INF: MeasureProfile start
17-03-18 02:25:51.454 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:25:51.464 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:25:51.464 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:25:51.464 -07 000000618 INF: MeasureProfile done
17-03-18 02:25:51.464 -07 000000618 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:25:51.464 -07 000000618 INF: Autofocus finished
17-03-18 02:25:51.474 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:25:51.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:25:51.664 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:25:51.664 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:25:51.664 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137064848852564. ----------
17-03-18 02:25:51.664 -07 000000610 INF: Cycle	99	Tile	10	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:25:51.674 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28449, sync = True, waitForSettling = True)
17-03-18 02:25:51.674 -07 000000610 INF: Z Motor: Moving to -0.130231 mm, started at -0.137065 mm, distance = 6.83 um
17-03-18 02:25:51.674 -07 000000610 INF: FPGA: Xmit ZDACW 28449\n [Z Motor]
17-03-18 02:25:51.674 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:25:51.684 -07 000000610 INF: FPGA: 'ZDACW 28449' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:51.684 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:25:51.684 -07 000000576 INF: FPGA: Recv ZDACR 28449
17-03-18 02:25:51.694 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:51.694 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:25:51.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:51.844 -07 000000618 INF: FPGA: Recv ZSGSRD 29565
17-03-18 02:25:51.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:25:51.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:51.854 -07 000000444 INF: FPGA: Recv ZSGSRD 29567
17-03-18 02:25:51.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:51.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:51.864 -07 000000590 INF: FPGA: Recv ZSGSRD 29558
17-03-18 02:25:51.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:51.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:51.874 -07 000000424 INF: FPGA: Recv ZSGSRD 29569
17-03-18 02:25:51.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:51.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:51.884 -07 000000629 INF: FPGA: Recv ZSGSRD 29570
17-03-18 02:25:51.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:25:51.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:51.894 -07 000000501 INF: FPGA: Recv ZSGSRD 29558
17-03-18 02:25:51.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:51.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:51.904 -07 000000618 INF: FPGA: Recv ZSGSRD 29554
17-03-18 02:25:51.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:51.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:51.914 -07 000000576 INF: FPGA: Recv ZSGSRD 29565
17-03-18 02:25:51.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:51.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:51.924 -07 000000579 INF: FPGA: Recv ZSGSRD 29558
17-03-18 02:25:51.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:51.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:51.934 -07 000000512 INF: FPGA: Recv ZSGSRD 29555
17-03-18 02:25:51.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:51.944 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:25:51.944 -07 000000591 INF: FPGA: Recv ZPIEZORD 25083
17-03-18 02:25:51.954 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:51.954 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.341 V. Piezo Error = -9.8 V.
17-03-18 02:25:51.954 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29562 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29562 (-129.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29554 (-129.4 uncal um), Max = 29570 (-129.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:25:51.954 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29562, posNoise = 8, negNoise = 8
17-03-18 02:25:51.954 -07 000000610 INF: Z Motor: After move to -0.130231, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:25:51.954 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:25:51.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:25:51.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:25:51.954 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:25:51.954 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:25:51.954 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:25:51.954 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:25:51.954 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:25:51.954 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:25:51.954 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:25:51.954 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:25:51.954 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:25:51.954 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:25:51.964 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:25:51.964 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:25:51.964 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:25:51.964 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:25:51.964 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:25:51.964 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:25:51.964 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:25:51.964 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:25:51.974 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28626 150\n [Camera]
17-03-18 02:25:52.174 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:25:52.564 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:25:52.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:25:52.564 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:25:52.564 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:25:52.564 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:25:52.574 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:25:52.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:25:52.574 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:25:52.574 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:25:52.574 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:25:52.764 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28626 780
17-03-18 02:25:52.904 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:25:52.944 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:25:52.944 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 02:25:52.944 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:52.944 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:25:52.944 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:25:52.944 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:52.954 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:25:52.954 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:25:52.954 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:25:52.954 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:25:53.104 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:25:53.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:25:53.104 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:25:53.214 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:25:53.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:25:53.214 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:25:53.214 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:25:53.214 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) start.
17-03-18 02:25:53.214 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:25:53.214 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:25:53.294 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:25:53.294 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:25:53.294 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28626 150' command took 2 ms to send, 1312 ms to get response, and 1319 ms overall
17-03-18 02:25:53.294 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:25:53.294 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.130235911345872. ------
17-03-18 02:25:53.294 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:25:53.294 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13656 mm
17-03-18 02:25:53.294 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:25:53.304 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 02:25:53.304 -07 000000561 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 02:25:53.304 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:53.304 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 29832, sync = True, waitForSettling = False)
17-03-18 02:25:53.304 -07 000000590 INF: Z Motor: Moving to -0.136562 mm, started at -0.130236 mm, distance = -6.33 um
17-03-18 02:25:53.304 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:25:53.304 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:25:53.304 -07 000000430 INF: FPGA: Recv YRDPOS 137979
17-03-18 02:25:53.314 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:25:53.314 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:53.314 -07 000000561 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:53.314 -07 000000561 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:25:53.314 -07 000000561 INF: Y Motor: Moving 1344 steps-22
17-03-18 02:25:53.324 -07 000000590 INF: FPGA: Xmit ZDACW 29832\n [Z Motor]
17-03-18 02:25:53.324 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:25:53.334 -07 000000590 INF: FPGA: 'ZDACW 29832' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:25:53.334 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:25:53.344 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:25:53.344 -07 000000569 INF: FPGA: Recv ZDACR 29832
17-03-18 02:25:53.354 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:25:53.354 -07 000000590 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 02:25:53.514 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:25:53.514 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-18 02:25:53.614 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:25:53.614 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:25:53.614 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:53.624 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:25:53.624 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:25:53.624 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:53.624 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:25:53.624 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:25:53.624 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 02:25:53.634 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:25:53.704 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 02:25:53.704 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 02:25:53.774 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:53.774 -07 000000461 INF: FPGA: Recv YRDPOS 139685
17-03-18 02:25:53.784 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:25:53.784 -07 000000561 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:53.784 -07 000000561 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 02:25:53.784 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.841 mm, average velocity = 2.144 mm/sec
17-03-18 02:25:54.614 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 4.015368,
17-03-18 02:25:54.734 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:54.734 -07 000000501 INF: FPGA: Recv YRDPOS 139685
17-03-18 02:25:54.744 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:25:54.744 -07 000000561 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:54.764 -07 000000561 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:25:54.764 -07 000000561 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:25:54.764 -07 000000561 INF: Y Motor: Moved to 68.2056 after 1465 ms (table move)
17-03-18 02:25:54.764 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136562 mm (DAC = 29832)
17-03-18 02:25:54.764 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:54.774 -07 000000430 INF: FPGA: Recv ZSGSRD 30550
17-03-18 02:25:54.774 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 02:25:54.774 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:54.774 -07 000000626 INF: FPGA: Recv ZSGSRD 30539
17-03-18 02:25:54.784 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:25:54.784 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:54.784 -07 000000569 INF: FPGA: Recv ZSGSRD 30548
17-03-18 02:25:54.794 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:54.794 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:54.794 -07 000000590 INF: FPGA: Recv ZSGSRD 30546
17-03-18 02:25:54.804 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:54.804 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:54.804 -07 000000606 INF: FPGA: Recv ZSGSRD 30539
17-03-18 02:25:54.814 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:54.814 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:54.814 -07 000000430 INF: FPGA: Recv ZSGSRD 30545
17-03-18 02:25:54.824 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:54.824 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:54.824 -07 000000626 INF: FPGA: Recv ZSGSRD 30544
17-03-18 02:25:54.834 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:54.834 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:54.834 -07 000000629 INF: FPGA: Recv ZSGSRD 30554
17-03-18 02:25:54.844 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:54.844 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:54.844 -07 000000569 INF: FPGA: Recv ZSGSRD 30556
17-03-18 02:25:54.854 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:54.854 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:54.854 -07 000000606 INF: FPGA: Recv ZSGSRD 30548
17-03-18 02:25:54.864 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:54.864 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:25:54.864 -07 000000444 INF: FPGA: Recv ZPIEZORD 26384
17-03-18 02:25:54.874 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:54.874 -07 000000424 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.552 V. Piezo Error = -9.2 V.
17-03-18 02:25:54.874 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30547 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30547 (-135.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30539 (-135.7 uncal um), Max = 30556 (-135.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:25:54.874 -07 000000424 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30547, posNoise = 9, negNoise = 8
17-03-18 02:25:54.874 -07 000000424 INF: Z Motor: After move to -0.136562, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:25:54.874 -07 000000424 INF: Z Motor: Settle wait time = 1468 ms, measure time = 101 ms (allowed 150 ms), total time = 1569 ms
17-03-18 02:25:54.874 -07 000000424 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 02:25:54.924 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 02:25:54.924 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:25:54.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:25:54.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:25:54.924 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:25:54.924 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:25:54.924 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:25:54.924 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:25:54.924 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:25:54.934 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:25:54.934 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:25:54.934 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:25:54.944 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:25:54.944 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:25:54.944 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:25:54.994 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:25:55.294 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:25:55.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:25:55.294 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:25:55.294 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:25:55.334 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:25:55.334 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 02:25:55.334 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 02:25:55.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 02:25:55.414 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:55.414 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:25:55.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 02:25:55.434 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:25:55.434 -07 000000467 INF: Autofocus start
17-03-18 02:25:55.434 -07 000000467 INF: MeasureProfile start
17-03-18 02:25:55.434 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:25:55.444 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:25:55.444 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:25:55.454 -07 000000467 INF: MeasureProfile done
17-03-18 02:25:55.454 -07 000000467 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:25:55.454 -07 000000467 INF: Autofocus finished
17-03-18 02:25:55.644 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:25:55.644 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:25:55.644 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.136563760305507. ----------
17-03-18 02:25:55.644 -07 000000610 INF: Cycle	99	Tile	11	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:25:55.654 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28356, sync = True, waitForSettling = True)
17-03-18 02:25:55.654 -07 000000610 INF: Z Motor: Moving to -0.129805 mm, started at -0.136564 mm, distance = 6.76 um
17-03-18 02:25:55.654 -07 000000610 INF: FPGA: Xmit ZDACW 28356\n [Z Motor]
17-03-18 02:25:55.654 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:25:55.664 -07 000000610 INF: FPGA: 'ZDACW 28356' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:55.664 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:25:55.664 -07 000000561 INF: FPGA: Recv ZDACR 28356
17-03-18 02:25:55.674 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:55.674 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:25:55.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:55.824 -07 000000467 INF: FPGA: Recv ZSGSRD 29498
17-03-18 02:25:55.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:25:55.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:55.834 -07 000000461 INF: FPGA: Recv ZSGSRD 29491
17-03-18 02:25:55.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:55.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:55.844 -07 000000618 INF: FPGA: Recv ZSGSRD 29492
17-03-18 02:25:55.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:55.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:55.854 -07 000000579 INF: FPGA: Recv ZSGSRD 29496
17-03-18 02:25:55.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:55.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:55.864 -07 000000606 INF: FPGA: Recv ZSGSRD 29492
17-03-18 02:25:55.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:55.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:55.874 -07 000000590 INF: FPGA: Recv ZSGSRD 29498
17-03-18 02:25:55.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:55.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:55.884 -07 000000467 INF: FPGA: Recv ZSGSRD 29495
17-03-18 02:25:55.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:55.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:55.894 -07 000000561 INF: FPGA: Recv ZSGSRD 29496
17-03-18 02:25:55.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:55.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:55.904 -07 000000591 INF: FPGA: Recv ZSGSRD 29497
17-03-18 02:25:55.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:55.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:55.914 -07 000000606 INF: FPGA: Recv ZSGSRD 29491
17-03-18 02:25:55.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:55.924 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:25:55.924 -07 000000455 INF: FPGA: Recv ZPIEZORD 25025
17-03-18 02:25:55.934 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:55.934 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.327 V. Piezo Error = -9.8 V.
17-03-18 02:25:55.934 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29495 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29496 (-129.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29491 (-129.0 uncal um), Max = 29498 (-129.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:25:55.934 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29495, posNoise = 3, negNoise = 4
17-03-18 02:25:55.934 -07 000000610 INF: Z Motor: After move to -0.129805, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:25:55.934 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:25:55.934 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:25:55.934 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:25:55.934 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:25:55.934 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:25:55.934 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:25:55.934 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:25:55.934 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:25:55.934 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:25:55.934 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:25:55.934 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:25:55.934 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:25:55.934 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:25:55.944 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:25:55.944 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:25:55.944 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:25:55.944 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:25:55.944 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:25:55.944 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:25:55.954 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:25:55.954 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:25:55.954 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28533 150\n [Camera]
17-03-18 02:25:56.154 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:25:56.474 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:25:56.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:25:56.544 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:25:56.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:25:56.554 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:25:56.554 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:25:56.554 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:25:56.554 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:25:56.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:25:56.554 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:25:56.554 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:25:56.554 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:25:56.744 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28533 780
17-03-18 02:25:56.894 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:25:56.924 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:25:56.924 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:25:56.924 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:56.924 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:25:56.924 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:25:56.924 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:56.934 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:25:56.934 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:25:56.934 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:25:56.934 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:25:57.084 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:25:57.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:25:57.084 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:25:57.194 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:25:57.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:25:57.194 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:25:57.194 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:25:57.194 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:25:57.194 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:25:57.194 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) start.
17-03-18 02:25:57.274 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:25:57.274 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:25:57.274 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28533 150' command took 2 ms to send, 1313 ms to get response, and 1319 ms overall
17-03-18 02:25:57.274 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:25:57.274 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.129805489132374. ------
17-03-18 02:25:57.274 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:25:57.274 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13653 mm
17-03-18 02:25:57.274 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:25:57.284 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 02:25:57.284 -07 000000461 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-18 02:25:57.284 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:57.284 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:25:57.284 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:25:57.284 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 29826, sync = True, waitForSettling = False)
17-03-18 02:25:57.284 -07 000000591 INF: Z Motor: Moving to -0.136535 mm, started at -0.129805 mm, distance = -6.73 um
17-03-18 02:25:57.284 -07 000000576 INF: FPGA: Recv YRDPOS 139685
17-03-18 02:25:57.294 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:25:57.294 -07 000000461 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:57.294 -07 000000461 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:25:57.294 -07 000000461 INF: Y Motor: Moving 1339 steps-14
17-03-18 02:25:57.294 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:25:57.304 -07 000000591 INF: FPGA: Xmit ZDACW 29826\n [Z Motor]
17-03-18 02:25:57.304 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:25:57.314 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:25:57.314 -07 000000591 INF: FPGA: 'ZDACW 29826' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:25:57.324 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:25:57.324 -07 000000561 INF: FPGA: Recv ZDACR 29826
17-03-18 02:25:57.334 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:25:57.334 -07 000000591 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 02:25:57.494 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:25:57.494 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 196 ms to get response, and 214 ms overall
17-03-18 02:25:57.584 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 02:25:57.584 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:25:57.584 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:57.584 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 02:25:57.584 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:25:57.584 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:57.594 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:25:57.594 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:25:57.594 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 511 ms.
17-03-18 02:25:57.594 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:25:57.684 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 02:25:57.684 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:25:57.734 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:57.734 -07 000000467 INF: FPGA: Recv YRDPOS 141368
17-03-18 02:25:57.744 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:25:57.744 -07 000000461 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:57.744 -07 000000461 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 02:25:57.744 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.108 mm/sec
17-03-18 02:25:58.694 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:25:58.694 -07 000000444 INF: FPGA: Recv YRDPOS 141368
17-03-18 02:25:58.704 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:58.704 -07 000000461 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:25:58.724 -07 000000461 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:25:58.724 -07 000000461 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:25:58.724 -07 000000461 INF: Y Motor: Moved to 69.0273 after 1446 ms (table move)
17-03-18 02:25:58.734 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136535 mm (DAC = 29826)
17-03-18 02:25:58.734 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:58.734 -07 000000590 INF: FPGA: Recv ZSGSRD 30541
17-03-18 02:25:58.744 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:25:58.744 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:58.744 -07 000000629 INF: FPGA: Recv ZSGSRD 30546
17-03-18 02:25:58.754 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:58.754 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:58.754 -07 000000455 INF: FPGA: Recv ZSGSRD 30547
17-03-18 02:25:58.764 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:58.764 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:58.764 -07 000000569 INF: FPGA: Recv ZSGSRD 30547
17-03-18 02:25:58.774 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:58.784 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:58.784 -07 000000430 INF: FPGA: Recv ZSGSRD 30539
17-03-18 02:25:58.794 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:25:58.794 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:58.794 -07 000000561 INF: FPGA: Recv ZSGSRD 30544
17-03-18 02:25:58.804 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:58.804 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:58.804 -07 000000424 INF: FPGA: Recv ZSGSRD 30534
17-03-18 02:25:58.814 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:58.814 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:58.814 -07 000000576 INF: FPGA: Recv ZSGSRD 30541
17-03-18 02:25:58.824 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:58.824 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:58.824 -07 000000502 INF: FPGA: Recv ZSGSRD 30539
17-03-18 02:25:58.834 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:58.834 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:58.834 -07 000000569 INF: FPGA: Recv ZSGSRD 30549
17-03-18 02:25:58.844 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:58.844 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:25:58.844 -07 000000461 INF: FPGA: Recv ZPIEZORD 26409
17-03-18 02:25:58.854 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:58.854 -07 000000626 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.551 V. Piezo Error = -9.1 V.
17-03-18 02:25:58.854 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30543 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30542 (-135.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30534 (-135.7 uncal um), Max = 30549 (-135.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:25:58.854 -07 000000626 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30543, posNoise = 6, negNoise = 9
17-03-18 02:25:58.854 -07 000000626 INF: Z Motor: After move to -0.136535, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:25:58.854 -07 000000626 INF: Z Motor: Settle wait time = 1449 ms, measure time = 119 ms (allowed 150 ms), total time = 1568 ms
17-03-18 02:25:58.854 -07 000000626 INF: Z Motor: Waiting extra 31 ms after reading position to reach expected total of 150 ms
17-03-18 02:25:58.894 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 02:25:58.894 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:25:58.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:25:58.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:25:58.894 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:25:58.894 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:25:58.894 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:25:58.894 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:25:58.894 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:25:58.894 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:25:58.904 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:25:58.904 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:25:58.914 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:25:58.914 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:25:58.914 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:25:58.964 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:25:59.264 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:25:59.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:25:59.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:25:59.264 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:25:59.304 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:25:59.304 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 02:25:59.304 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:25:59.374 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:25:59.374 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:25:59.374 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:25:59.374 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 02:25:59.404 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:25:59.404 -07 000000444 INF: Autofocus start
17-03-18 02:25:59.404 -07 000000444 INF: MeasureProfile start
17-03-18 02:25:59.404 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:25:59.414 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:25:59.414 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:25:59.414 -07 000000444 INF: MeasureProfile done
17-03-18 02:25:59.414 -07 000000444 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:25:59.414 -07 000000444 INF: Autofocus finished
17-03-18 02:25:59.614 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:25:59.614 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:25:59.614 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.13653806345694. ----------
17-03-18 02:25:59.614 -07 000000610 INF: Cycle	99	Tile	12	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:25:59.624 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28321, sync = True, waitForSettling = True)
17-03-18 02:25:59.624 -07 000000610 INF: Z Motor: Moving to -0.129645 mm, started at -0.136538 mm, distance = 6.89 um
17-03-18 02:25:59.624 -07 000000610 INF: FPGA: Xmit ZDACW 28321\n [Z Motor]
17-03-18 02:25:59.624 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:25:59.634 -07 000000610 INF: FPGA: 'ZDACW 28321' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:59.634 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:25:59.634 -07 000000629 INF: FPGA: Recv ZDACR 28321
17-03-18 02:25:59.644 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:59.644 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:25:59.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:59.794 -07 000000424 INF: FPGA: Recv ZSGSRD 29467
17-03-18 02:25:59.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:25:59.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:59.804 -07 000000455 INF: FPGA: Recv ZSGSRD 29468
17-03-18 02:25:59.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:59.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:59.814 -07 000000430 INF: FPGA: Recv ZSGSRD 29472
17-03-18 02:25:59.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:59.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:59.824 -07 000000569 INF: FPGA: Recv ZSGSRD 29473
17-03-18 02:25:59.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:59.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:59.834 -07 000000462 INF: FPGA: Recv ZSGSRD 29466
17-03-18 02:25:59.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:59.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:59.844 -07 000000606 INF: FPGA: Recv ZSGSRD 29473
17-03-18 02:25:59.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:59.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:59.854 -07 000000467 INF: FPGA: Recv ZSGSRD 29473
17-03-18 02:25:59.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:25:59.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:59.864 -07 000000579 INF: FPGA: Recv ZSGSRD 29471
17-03-18 02:25:59.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:59.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:59.874 -07 000000591 INF: FPGA: Recv ZSGSRD 29465
17-03-18 02:25:59.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:59.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:25:59.884 -07 000000455 INF: FPGA: Recv ZSGSRD 29469
17-03-18 02:25:59.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:59.894 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:25:59.894 -07 000000501 INF: FPGA: Recv ZPIEZORD 24997
17-03-18 02:25:59.904 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:25:59.904 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.322 V. Piezo Error = -9.8 V.
17-03-18 02:25:59.904 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29470 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29470 (-128.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29465 (-128.8 uncal um), Max = 29473 (-128.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:25:59.904 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29470, posNoise = 3, negNoise = 5
17-03-18 02:25:59.904 -07 000000610 INF: Z Motor: After move to -0.129645, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:25:59.904 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:25:59.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:25:59.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:25:59.904 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:25:59.904 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:25:59.904 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:25:59.904 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:25:59.904 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:25:59.904 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:25:59.904 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:25:59.904 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:25:59.904 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:25:59.904 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:25:59.904 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:25:59.904 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:25:59.904 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:25:59.904 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:25:59.914 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:25:59.914 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:25:59.914 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:25:59.914 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:25:59.924 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28497 150\n [Camera]
17-03-18 02:25:59.974 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 3.98264,
17-03-18 02:26:00.124 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:26:00.514 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:26:00.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:26:00.514 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:26:00.524 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:26:00.524 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:26:00.524 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:26:00.524 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:26:00.524 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:26:00.524 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:26:00.524 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:26:00.714 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28497 780
17-03-18 02:26:00.864 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:26:00.894 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:26:00.894 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:26:00.894 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:00.894 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 02:26:00.894 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 02:26:00.894 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:00.904 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:26:00.904 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:26:00.904 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:26:00.914 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:26:01.054 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:26:01.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:26:01.054 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:26:01.174 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:26:01.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:26:01.174 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:26:01.174 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:26:01.174 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) start.
17-03-18 02:26:01.174 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:26:01.174 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:26:01.244 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:26:01.244 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:26:01.244 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28497 150' command took 2 ms to send, 1313 ms to get response, and 1319 ms overall
17-03-18 02:26:01.244 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:26:01.244 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.12964488382883. ------
17-03-18 02:26:01.244 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:26:01.244 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13599 mm
17-03-18 02:26:01.244 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:26:01.254 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:26:01.254 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 02:26:01.254 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 02:26:01.254 -07 000000455 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 02:26:01.254 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:26:01.254 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29706, sync = True, waitForSettling = False)
17-03-18 02:26:01.254 -07 000000512 INF: Z Motor: Moving to -0.135985 mm, started at -0.129645 mm, distance = -6.34 um
17-03-18 02:26:01.264 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:26:01.264 -07 000000424 INF: FPGA: Recv YRDPOS 141369
17-03-18 02:26:01.274 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:26:01.274 -07 000000455 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:26:01.274 -07 000000512 INF: FPGA: Xmit ZDACW 29706\n [Z Motor]
17-03-18 02:26:01.274 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:26:01.274 -07 000000455 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:26:01.274 -07 000000455 INF: Y Motor: Moving 1352 steps-31
17-03-18 02:26:01.284 -07 000000512 INF: FPGA: 'ZDACW 29706' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:26:01.284 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:26:01.284 -07 000000618 INF: FPGA: Recv ZDACR 29706
17-03-18 02:26:01.294 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:26:01.294 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:01.294 -07 000000512 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 02:26:01.454 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:26:01.454 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 02:26:01.474 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:26:01.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:26:01.564 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 02:26:01.564 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:26:01.564 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:01.574 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 02:26:01.574 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:26:01.574 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:01.574 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:26:01.574 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:26:01.574 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 02:26:01.584 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 02:26:01.664 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 02:26:01.664 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 02:26:01.714 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:26:01.714 -07 000000430 INF: FPGA: Recv YRDPOS 143080
17-03-18 02:26:01.724 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:26:01.724 -07 000000455 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:26:01.724 -07 000000455 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:26:01.724 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.845 mm, average velocity = 2.162 mm/sec
17-03-18 02:26:02.674 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:26:02.674 -07 000000444 INF: FPGA: Recv YRDPOS 143080
17-03-18 02:26:02.684 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:26:02.684 -07 000000455 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:26:02.704 -07 000000455 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:26:02.704 -07 000000455 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:26:02.704 -07 000000455 INF: Y Motor: Moved to 69.8633 after 1455 ms (table move)
17-03-18 02:26:02.714 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135985 mm (DAC = 29706)
17-03-18 02:26:02.714 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:02.714 -07 000000430 INF: FPGA: Recv ZSGSRD 30459
17-03-18 02:26:02.724 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:26:02.724 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:02.724 -07 000000561 INF: FPGA: Recv ZSGSRD 30461
17-03-18 02:26:02.734 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:02.734 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:02.734 -07 000000461 INF: FPGA: Recv ZSGSRD 30457
17-03-18 02:26:02.744 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:02.744 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:02.744 -07 000000591 INF: FPGA: Recv ZSGSRD 30455
17-03-18 02:26:02.754 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:02.754 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:02.754 -07 000000576 INF: FPGA: Recv ZSGSRD 30459
17-03-18 02:26:02.764 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:02.764 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:02.764 -07 000000569 INF: FPGA: Recv ZSGSRD 30452
17-03-18 02:26:02.774 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:02.774 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:02.774 -07 000000618 INF: FPGA: Recv ZSGSRD 30456
17-03-18 02:26:02.784 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:02.784 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:02.784 -07 000000512 INF: FPGA: Recv ZSGSRD 30454
17-03-18 02:26:02.794 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:02.794 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:02.794 -07 000000590 INF: FPGA: Recv ZSGSRD 30454
17-03-18 02:26:02.804 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:02.804 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:02.804 -07 000000606 INF: FPGA: Recv ZSGSRD 30466
17-03-18 02:26:02.814 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:02.814 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:26:02.814 -07 000000501 INF: FPGA: Recv ZPIEZORD 26305
17-03-18 02:26:02.824 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:02.824 -07 000000579 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.533 V. Piezo Error = -9.1 V.
17-03-18 02:26:02.824 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.0 um, Read 10 ADC samples: Avg = 30457 (-135.2 uncal um), Error = 0.8 uncal um, Median = 30456 (-135.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30452 (-135.2 uncal um), Max = 30466 (-135.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:26:02.824 -07 000000579 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30457, posNoise = 9, negNoise = 5
17-03-18 02:26:02.824 -07 000000579 INF: Z Motor: After move to -0.135985, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:26:02.824 -07 000000579 INF: Z Motor: Settle wait time = 1458 ms, measure time = 109 ms (allowed 150 ms), total time = 1567 ms
17-03-18 02:26:02.824 -07 000000579 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:26:02.874 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 02:26:02.874 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:26:02.874 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:26:02.874 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:26:02.874 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:26:02.874 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:26:02.874 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:26:02.874 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:26:02.874 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:26:02.874 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:26:02.884 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:26:02.884 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:26:02.894 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:26:02.894 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 02:26:02.894 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:26:02.944 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:26:03.244 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:26:03.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:26:03.244 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:26:03.244 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:26:03.284 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:26:03.284 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 02:26:03.284 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 02:26:03.364 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:26:03.364 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:03.364 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:26:03.364 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:26:03.384 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:26:03.384 -07 000000618 INF: Autofocus start
17-03-18 02:26:03.384 -07 000000618 INF: MeasureProfile start
17-03-18 02:26:03.384 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:26:03.394 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:26:03.394 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:26:03.404 -07 000000618 INF: MeasureProfile done
17-03-18 02:26:03.404 -07 000000618 INF: X=32  Z correction [um]=0.1299841
17-03-18 02:26:03.404 -07 000000618 INF: Autofocus finished
17-03-18 02:26:03.594 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:26:03.594 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:26:03.594 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.135985581212748. ----------
17-03-18 02:26:03.594 -07 000000610 INF: Cycle	99	Tile	13	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:26:03.604 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28247, sync = True, waitForSettling = True)
17-03-18 02:26:03.604 -07 000000610 INF: Z Motor: Moving to -0.129306 mm, started at -0.135986 mm, distance = 6.68 um
17-03-18 02:26:03.604 -07 000000610 INF: FPGA: Xmit ZDACW 28247\n [Z Motor]
17-03-18 02:26:03.604 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:26:03.614 -07 000000610 INF: FPGA: 'ZDACW 28247' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:03.614 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:26:03.614 -07 000000462 INF: FPGA: Recv ZDACR 28247
17-03-18 02:26:03.624 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:03.624 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:26:03.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:03.774 -07 000000467 INF: FPGA: Recv ZSGSRD 29420
17-03-18 02:26:03.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:26:03.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:03.784 -07 000000461 INF: FPGA: Recv ZSGSRD 29420
17-03-18 02:26:03.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:03.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:03.794 -07 000000455 INF: FPGA: Recv ZSGSRD 29413
17-03-18 02:26:03.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:03.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:03.804 -07 000000424 INF: FPGA: Recv ZSGSRD 29419
17-03-18 02:26:03.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:03.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:03.814 -07 000000590 INF: FPGA: Recv ZSGSRD 29423
17-03-18 02:26:03.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:03.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:03.824 -07 000000455 INF: FPGA: Recv ZSGSRD 29421
17-03-18 02:26:03.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:03.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:03.834 -07 000000591 INF: FPGA: Recv ZSGSRD 29421
17-03-18 02:26:03.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:03.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:03.844 -07 000000576 INF: FPGA: Recv ZSGSRD 29421
17-03-18 02:26:03.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:03.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:03.854 -07 000000467 INF: FPGA: Recv ZSGSRD 29416
17-03-18 02:26:03.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:03.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:03.864 -07 000000629 INF: FPGA: Recv ZSGSRD 29413
17-03-18 02:26:03.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:03.874 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:26:03.874 -07 000000424 INF: FPGA: Recv ZPIEZORD 24944
17-03-18 02:26:03.884 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:03.884 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.310 V. Piezo Error = -9.8 V.
17-03-18 02:26:03.884 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29419 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29420 (-128.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29413 (-128.5 uncal um), Max = 29423 (-128.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:26:03.884 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29419, posNoise = 4, negNoise = 6
17-03-18 02:26:03.884 -07 000000610 INF: Z Motor: After move to -0.129306, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:26:03.884 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:26:03.884 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:26:03.884 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:26:03.884 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:26:03.884 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:26:03.884 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:26:03.884 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:26:03.884 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:26:03.884 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:26:03.884 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:26:03.884 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:26:03.884 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:26:03.884 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:26:03.884 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:26:03.884 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:26:03.894 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:26:03.894 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:26:03.904 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 02:26:03.904 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:26:03.904 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:26:03.904 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:26:03.914 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28424 150\n [Camera]
17-03-18 02:26:04.114 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:26:04.504 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:26:04.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:26:04.504 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:26:04.504 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:26:04.504 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:26:04.504 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:26:04.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:26:04.514 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:26:04.514 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:26:04.514 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:26:04.694 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28424 780
17-03-18 02:26:04.844 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:26:04.884 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 02:26:04.884 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 02:26:04.884 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:04.884 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:26:04.884 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:26:04.884 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:04.894 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:26:04.894 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:26:04.894 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:26:04.894 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:26:05.034 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:26:05.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:26:05.044 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:26:05.154 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:26:05.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:26:05.154 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:26:05.154 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:26:05.154 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:26:05.154 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:26:05.154 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) start.
17-03-18 02:26:05.234 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:26:05.234 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:26:05.234 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28424 150' command took 2 ms to send, 1311 ms to get response, and 1320 ms overall
17-03-18 02:26:05.234 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:26:05.234 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.129317249009601. ------
17-03-18 02:26:05.234 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:26:05.234 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13575 mm
17-03-18 02:26:05.234 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:26:05.234 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:26:05.244 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:26:05.244 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29654, sync = True, waitForSettling = False)
17-03-18 02:26:05.244 -07 000000501 INF: Z Motor: Moving to -0.135747 mm, started at -0.129317 mm, distance = -6.43 um
17-03-18 02:26:05.244 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:26:05.244 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 02:26:05.244 -07 000000569 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-18 02:26:05.254 -07 000000501 INF: FPGA: Xmit ZDACW 29654\n [Z Motor]
17-03-18 02:26:05.254 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:26:05.264 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:26:05.264 -07 000000501 INF: FPGA: 'ZDACW 29654' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:26:05.264 -07 000000626 INF: FPGA: Recv YRDPOS 143081
17-03-18 02:26:05.274 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:26:05.274 -07 000000569 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:26:05.274 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:26:05.274 -07 000000467 INF: FPGA: Recv ZDACR 29654
17-03-18 02:26:05.274 -07 000000569 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:26:05.274 -07 000000569 INF: Y Motor: Moving 1342 steps-19
17-03-18 02:26:05.284 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:26:05.284 -07 000000501 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 02:26:05.284 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:26:05.334 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 4.000345,
17-03-18 02:26:05.444 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:26:05.444 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:26:05.544 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 02:26:05.544 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:26:05.544 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:05.554 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:26:05.554 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 02:26:05.554 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:26:05.554 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:05.554 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:26:05.554 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-18 02:26:05.554 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:26:05.654 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 02:26:05.654 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 02:26:05.704 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:26:05.704 -07 000000576 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:26:05.714 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:26:05.714 -07 000000569 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:26:05.714 -07 000000569 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:26:05.714 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.839 mm, average velocity = 2.186 mm/sec
17-03-18 02:26:06.474 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:26:06.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:26:06.664 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:26:06.664 -07 000000606 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:26:06.674 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:26:06.674 -07 000000569 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:26:06.694 -07 000000569 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:26:06.694 -07 000000569 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:26:06.694 -07 000000569 INF: Y Motor: Moved to 70.6885 after 1457 ms (table move)
17-03-18 02:26:06.704 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135747 mm (DAC = 29654)
17-03-18 02:26:06.704 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:06.704 -07 000000444 INF: FPGA: Recv ZSGSRD 30420
17-03-18 02:26:06.714 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:26:06.714 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:06.714 -07 000000561 INF: FPGA: Recv ZSGSRD 30425
17-03-18 02:26:06.724 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:06.724 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:06.724 -07 000000591 INF: FPGA: Recv ZSGSRD 30425
17-03-18 02:26:06.734 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:06.734 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:06.734 -07 000000579 INF: FPGA: Recv ZSGSRD 30419
17-03-18 02:26:06.744 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:06.744 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:06.744 -07 000000569 INF: FPGA: Recv ZSGSRD 30421
17-03-18 02:26:06.754 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:06.754 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:06.754 -07 000000444 INF: FPGA: Recv ZSGSRD 30420
17-03-18 02:26:06.764 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:06.764 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:06.764 -07 000000590 INF: FPGA: Recv ZSGSRD 30418
17-03-18 02:26:06.774 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:06.774 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:06.774 -07 000000561 INF: FPGA: Recv ZSGSRD 30414
17-03-18 02:26:06.784 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:06.784 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:06.784 -07 000000462 INF: FPGA: Recv ZSGSRD 30423
17-03-18 02:26:06.794 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:06.794 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:06.794 -07 000000606 INF: FPGA: Recv ZSGSRD 30429
17-03-18 02:26:06.804 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:06.804 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:26:06.804 -07 000000591 INF: FPGA: Recv ZPIEZORD 26257
17-03-18 02:26:06.814 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:06.814 -07 000000455 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.525 V. Piezo Error = -9.2 V.
17-03-18 02:26:06.814 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30421 (-135.0 uncal um), Error = 0.8 uncal um, Median = 30420 (-135.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30414 (-134.9 uncal um), Max = 30429 (-135.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:26:06.814 -07 000000455 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30421, posNoise = 8, negNoise = 7
17-03-18 02:26:06.814 -07 000000455 INF: Z Motor: After move to -0.135747, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:26:06.814 -07 000000455 INF: Z Motor: Settle wait time = 1461 ms, measure time = 109 ms (allowed 150 ms), total time = 1570 ms
17-03-18 02:26:06.814 -07 000000455 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:26:06.864 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 02:26:06.864 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:26:06.864 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:26:06.864 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:26:06.864 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:26:06.864 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:26:06.864 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:26:06.864 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:26:06.864 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:26:06.864 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:26:06.874 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 02:26:06.874 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:26:06.884 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:26:06.884 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 02:26:06.884 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:26:06.934 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:26:07.234 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:26:07.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:26:07.234 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:26:07.234 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:26:07.274 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:26:07.274 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 02:26:07.274 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 02:26:07.354 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 02:26:07.354 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:07.364 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:26:07.364 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 02:26:07.374 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:26:07.374 -07 000000576 INF: Autofocus start
17-03-18 02:26:07.374 -07 000000576 INF: MeasureProfile start
17-03-18 02:26:07.374 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:26:07.384 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:26:07.384 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:26:07.384 -07 000000576 INF: MeasureProfile done
17-03-18 02:26:07.384 -07 000000576 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:26:07.384 -07 000000576 INF: Autofocus finished
17-03-18 02:26:07.584 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:26:07.584 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:26:07.584 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.135754309575645. ----------
17-03-18 02:26:07.584 -07 000000610 INF: Cycle	99	Tile	14	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:26:07.594 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28161, sync = True, waitForSettling = True)
17-03-18 02:26:07.594 -07 000000610 INF: Z Motor: Moving to -0.128913 mm, started at -0.135754 mm, distance = 6.84 um
17-03-18 02:26:07.594 -07 000000610 INF: FPGA: Xmit ZDACW 28161\n [Z Motor]
17-03-18 02:26:07.594 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:26:07.604 -07 000000610 INF: FPGA: 'ZDACW 28161' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:07.604 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:26:07.604 -07 000000501 INF: FPGA: Recv ZDACR 28161
17-03-18 02:26:07.614 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:07.614 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:26:07.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:07.764 -07 000000629 INF: FPGA: Recv ZSGSRD 29355
17-03-18 02:26:07.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:26:07.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:07.774 -07 000000455 INF: FPGA: Recv ZSGSRD 29358
17-03-18 02:26:07.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:07.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:07.784 -07 000000502 INF: FPGA: Recv ZSGSRD 29355
17-03-18 02:26:07.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:07.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:07.794 -07 000000430 INF: FPGA: Recv ZSGSRD 29357
17-03-18 02:26:07.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:07.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:07.804 -07 000000618 INF: FPGA: Recv ZSGSRD 29354
17-03-18 02:26:07.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:07.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:07.814 -07 000000590 INF: FPGA: Recv ZSGSRD 29356
17-03-18 02:26:07.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:07.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:07.824 -07 000000444 INF: FPGA: Recv ZSGSRD 29364
17-03-18 02:26:07.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:07.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:07.834 -07 000000461 INF: FPGA: Recv ZSGSRD 29351
17-03-18 02:26:07.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:07.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:07.844 -07 000000606 INF: FPGA: Recv ZSGSRD 29357
17-03-18 02:26:07.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:07.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:07.854 -07 000000455 INF: FPGA: Recv ZSGSRD 29359
17-03-18 02:26:07.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:07.864 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:26:07.864 -07 000000591 INF: FPGA: Recv ZPIEZORD 24870
17-03-18 02:26:07.874 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:07.874 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.297 V. Piezo Error = -9.8 V.
17-03-18 02:26:07.874 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29357 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29356 (-128.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29351 (-128.1 uncal um), Max = 29364 (-128.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:26:07.874 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29357, posNoise = 7, negNoise = 6
17-03-18 02:26:07.874 -07 000000610 INF: Z Motor: After move to -0.128913, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:26:07.874 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:26:07.874 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:26:07.874 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:26:07.874 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:26:07.874 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:26:07.874 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:26:07.874 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:26:07.874 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:26:07.874 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:26:07.874 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:26:07.874 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:26:07.874 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 02:26:07.874 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:26:07.884 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:26:07.884 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:26:07.884 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:26:07.884 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:26:07.894 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:26:07.894 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:26:07.894 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:26:07.894 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:26:07.894 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28338 150\n [Camera]
17-03-18 02:26:08.094 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:26:08.484 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:26:08.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:26:08.494 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:26:08.494 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:26:08.494 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:26:08.494 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:26:08.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:26:08.494 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:26:08.494 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:26:08.494 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:26:08.684 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28338 780
17-03-18 02:26:08.834 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:26:08.874 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 02:26:08.874 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:26:08.874 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:08.874 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 02:26:08.874 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 02:26:08.874 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:08.884 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:26:08.884 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:26:08.884 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:26:08.884 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:26:09.024 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:26:09.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:26:09.024 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:26:09.134 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:26:09.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:26:09.144 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:26:09.144 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:26:09.144 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:26:09.144 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:26:09.144 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) start.
17-03-18 02:26:09.214 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:26:09.214 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:26:09.214 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28338 150' command took 2 ms to send, 1312 ms to get response, and 1319 ms overall
17-03-18 02:26:09.214 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:26:09.214 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.128918947856811. ------
17-03-18 02:26:09.214 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:26:09.214 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13570 mm
17-03-18 02:26:09.214 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:26:09.224 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:26:09.224 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:26:09.224 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 29643, sync = True, waitForSettling = False)
17-03-18 02:26:09.224 -07 000000579 INF: Z Motor: Moving to -0.135697 mm, started at -0.128919 mm, distance = -6.78 um
17-03-18 02:26:09.224 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 02:26:09.224 -07 000000467 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 02:26:09.224 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:26:09.234 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:26:09.234 -07 000000591 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:26:09.244 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 02:26:09.244 -07 000000467 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:26:09.244 -07 000000467 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:26:09.244 -07 000000579 INF: FPGA: Xmit ZDACW 29643\n [Z Motor]
17-03-18 02:26:09.244 -07 000000467 INF: Y Motor: Moving 1351 steps-29
17-03-18 02:26:09.244 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:26:09.254 -07 000000579 INF: FPGA: 'ZDACW 29643' command took 3 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:26:09.254 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:26:09.254 -07 000000626 INF: FPGA: Recv ZDACR 29643
17-03-18 02:26:09.264 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:26:09.264 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:26:09.264 -07 000000579 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 02:26:09.424 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:26:09.424 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 196 ms to get response, and 203 ms overall
17-03-18 02:26:09.524 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 02:26:09.524 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:26:09.524 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:09.534 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 02:26:09.534 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:26:09.534 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:09.534 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:26:09.534 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:26:09.534 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-18 02:26:09.544 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:26:09.634 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:26:09.634 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 02:26:09.684 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:26:09.694 -07 000000512 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:26:09.694 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:26:09.694 -07 000000467 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:26:09.694 -07 000000467 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:26:09.694 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.142 mm/sec
17-03-18 02:26:10.644 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:26:10.644 -07 000000501 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:26:10.654 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:26:10.654 -07 000000467 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:26:10.674 -07 000000467 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:26:10.674 -07 000000467 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:26:10.674 -07 000000467 INF: Y Motor: Moved to 71.5190 after 1455 ms (table move)
17-03-18 02:26:10.684 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135697 mm (DAC = 29643)
17-03-18 02:26:10.694 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:10.694 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 4.016692,
17-03-18 02:26:10.694 -07 000000430 INF: FPGA: Recv ZSGSRD 30415
17-03-18 02:26:10.704 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:26:10.724 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:10.724 -07 000000579 INF: FPGA: Recv ZSGSRD 30418
17-03-18 02:26:10.734 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:26:10.734 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:10.734 -07 000000590 INF: FPGA: Recv ZSGSRD 30412
17-03-18 02:26:10.744 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:10.764 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:10.764 -07 000000444 INF: FPGA: Recv ZSGSRD 30412
17-03-18 02:26:10.774 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:26:10.774 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:10.774 -07 000000502 INF: FPGA: Recv ZSGSRD 30411
17-03-18 02:26:10.784 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:10.784 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:10.784 -07 000000455 INF: FPGA: Recv ZSGSRD 30414
17-03-18 02:26:10.794 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:10.794 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:10.794 -07 000000569 INF: FPGA: Recv ZSGSRD 30422
17-03-18 02:26:10.804 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:10.804 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:10.804 -07 000000430 INF: FPGA: Recv ZSGSRD 30417
17-03-18 02:26:10.814 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:10.814 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:10.814 -07 000000467 INF: FPGA: Recv ZSGSRD 30414
17-03-18 02:26:10.824 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:10.824 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:10.824 -07 000000579 INF: FPGA: Recv ZSGSRD 30407
17-03-18 02:26:10.834 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:10.834 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:26:10.834 -07 000000576 INF: FPGA: Recv ZPIEZORD 26289
17-03-18 02:26:10.844 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:10.844 -07 000000561 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.523 V. Piezo Error = -9.1 V.
17-03-18 02:26:10.844 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30414 (-134.9 uncal um), Error = 0.8 uncal um, Median = 30414 (-134.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30407 (-134.9 uncal um), Max = 30422 (-135.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:26:10.844 -07 000000561 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30414, posNoise = 8, negNoise = 7
17-03-18 02:26:10.844 -07 000000561 INF: Z Motor: After move to -0.135697, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:26:10.844 -07 000000561 INF: Z Motor: Settle wait time = 1458 ms, measure time = 160 ms (allowed 150 ms), total time = 1618 ms
17-03-18 02:26:10.844 -07 000000561 INF: Z Motor: Warning: Actual position measuring time = 160 ms, longer than max expected time of 150 ms
17-03-18 02:26:10.844 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 02:26:10.844 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:26:10.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:26:10.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:26:10.844 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:26:10.844 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:26:10.844 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:26:10.844 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:26:10.844 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:26:10.844 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:26:10.854 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:26:10.854 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:26:10.864 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:26:10.864 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:26:10.864 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:26:10.914 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:26:11.214 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:26:11.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:26:11.214 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:26:11.214 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:26:11.254 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:26:11.254 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 02:26:11.254 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 02:26:11.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 02:26:11.324 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:11.324 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:26:11.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 02:26:11.354 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:26:11.354 -07 000000502 INF: Autofocus start
17-03-18 02:26:11.354 -07 000000502 INF: MeasureProfile start
17-03-18 02:26:11.354 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:26:11.364 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:26:11.364 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:26:11.364 -07 000000502 INF: MeasureProfile done
17-03-18 02:26:11.364 -07 000000502 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:26:11.364 -07 000000502 INF: Autofocus finished
17-03-18 02:26:11.474 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:26:11.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:26:11.564 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:26:11.564 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:26:11.564 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.135709340090653. ----------
17-03-18 02:26:11.564 -07 000000610 INF: Cycle	99	Tile	15	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:26:11.574 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28138, sync = True, waitForSettling = True)
17-03-18 02:26:11.574 -07 000000610 INF: Z Motor: Moving to -0.128808 mm, started at -0.135709 mm, distance = 6.90 um
17-03-18 02:26:11.574 -07 000000610 INF: FPGA: Xmit ZDACW 28138\n [Z Motor]
17-03-18 02:26:11.574 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:26:11.584 -07 000000610 INF: FPGA: 'ZDACW 28138' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:11.584 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:26:11.584 -07 000000569 INF: FPGA: Recv ZDACR 28138
17-03-18 02:26:11.594 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:11.594 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:26:11.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:11.744 -07 000000576 INF: FPGA: Recv ZSGSRD 29342
17-03-18 02:26:11.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:26:11.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:11.754 -07 000000569 INF: FPGA: Recv ZSGSRD 29343
17-03-18 02:26:11.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:11.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:11.764 -07 000000512 INF: FPGA: Recv ZSGSRD 29342
17-03-18 02:26:11.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:11.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:11.774 -07 000000467 INF: FPGA: Recv ZSGSRD 29345
17-03-18 02:26:11.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:11.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:11.784 -07 000000501 INF: FPGA: Recv ZSGSRD 29338
17-03-18 02:26:11.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:11.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:11.794 -07 000000591 INF: FPGA: Recv ZSGSRD 29345
17-03-18 02:26:11.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:11.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:11.804 -07 000000502 INF: FPGA: Recv ZSGSRD 29343
17-03-18 02:26:11.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:11.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:11.814 -07 000000629 INF: FPGA: Recv ZSGSRD 29342
17-03-18 02:26:11.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:11.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:11.824 -07 000000626 INF: FPGA: Recv ZSGSRD 29340
17-03-18 02:26:11.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:11.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:11.834 -07 000000579 INF: FPGA: Recv ZSGSRD 29340
17-03-18 02:26:11.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:11.844 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:26:11.844 -07 000000462 INF: FPGA: Recv ZPIEZORD 24868
17-03-18 02:26:11.854 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:11.854 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.294 V. Piezo Error = -9.8 V.
17-03-18 02:26:11.854 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29342 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29342 (-128.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29338 (-128.0 uncal um), Max = 29345 (-128.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:26:11.854 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29342, posNoise = 3, negNoise = 4
17-03-18 02:26:11.854 -07 000000610 INF: Z Motor: After move to -0.128808, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:26:11.854 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:26:11.854 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:26:11.854 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:26:11.854 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:26:11.854 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:26:11.854 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:26:11.854 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:26:11.854 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:26:11.854 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:26:11.854 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:26:11.854 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:26:11.854 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:26:11.864 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:26:11.864 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:26:11.864 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:26:11.864 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:26:11.864 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:26:11.874 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:26:11.874 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:26:11.874 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:26:11.874 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:26:11.874 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28315 150\n [Camera]
17-03-18 02:26:12.074 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:26:12.474 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:26:12.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:26:12.474 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:26:12.474 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:26:12.474 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:26:12.474 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:26:12.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:26:12.474 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:26:12.474 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:26:12.474 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:26:12.664 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28315 780
17-03-18 02:26:12.814 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:26:12.844 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 02:26:12.844 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 02:26:12.844 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:12.844 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:26:12.844 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:26:12.844 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:12.854 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:26:12.854 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:26:12.854 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:26:12.854 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 02:26:13.004 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:26:13.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:26:13.004 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:26:13.114 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:26:13.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:26:13.124 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:26:13.124 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:26:13.124 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:26:13.124 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:26:13.124 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) start.
17-03-18 02:26:13.194 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:26:13.194 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:26:13.194 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28315 150' command took 2 ms to send, 1315 ms to get response, and 1320 ms overall
17-03-18 02:26:13.194 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:26:13.194 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.128822584674685. ------
17-03-18 02:26:13.204 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:26:13.204 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13514 mm
17-03-18 02:26:13.204 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:26:13.204 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:26:13.204 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29522, sync = True, waitForSettling = False)
17-03-18 02:26:13.204 -07 000000502 INF: Z Motor: Moving to -0.135143 mm, started at -0.128823 mm, distance = -6.32 um
17-03-18 02:26:13.204 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 02:26:13.204 -07 000000512 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 02:26:13.214 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:13.214 -07 000000502 INF: FPGA: Xmit ZDACW 29522\n [Z Motor]
17-03-18 02:26:13.214 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:26:13.224 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:26:13.224 -07 000000502 INF: FPGA: 'ZDACW 29522' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:26:13.224 -07 000000626 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:26:13.234 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:26:13.234 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:26:13.234 -07 000000512 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:26:13.234 -07 000000512 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:26:13.234 -07 000000512 INF: Y Motor: Moving 1350 steps-28
17-03-18 02:26:13.244 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:26:13.244 -07 000000576 INF: FPGA: Recv ZDACR 29522
17-03-18 02:26:13.254 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:26:13.254 -07 000000502 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 02:26:13.254 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:26:13.434 -07 000000430 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:26:13.434 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:26:13.524 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 02:26:13.524 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:26:13.524 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:13.524 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 02:26:13.524 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:26:13.524 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:13.524 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:26:13.524 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-18 02:26:13.524 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:26:13.534 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:26:13.634 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 02:26:13.634 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 398 ms overall
17-03-18 02:26:13.674 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:26:13.674 -07 000000501 INF: FPGA: Recv YRDPOS 148172
17-03-18 02:26:13.684 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:26:13.684 -07 000000512 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:26:13.684 -07 000000512 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 02:26:13.684 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-18 02:26:14.634 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:26:14.634 -07 000000618 INF: FPGA: Recv YRDPOS 148173
17-03-18 02:26:14.644 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:26:14.644 -07 000000512 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:26:14.664 -07 000000512 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:26:14.664 -07 000000512 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:26:14.664 -07 000000512 INF: Y Motor: Moved to 72.3501 after 1464 ms (table move)
17-03-18 02:26:14.674 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135143 mm (DAC = 29522)
17-03-18 02:26:14.674 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:14.674 -07 000000430 INF: FPGA: Recv ZSGSRD 30330
17-03-18 02:26:14.684 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:26:14.684 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:14.684 -07 000000561 INF: FPGA: Recv ZSGSRD 30326
17-03-18 02:26:14.694 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:14.694 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:14.694 -07 000000569 INF: FPGA: Recv ZSGSRD 30327
17-03-18 02:26:14.704 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:14.704 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:14.704 -07 000000606 INF: FPGA: Recv ZSGSRD 30329
17-03-18 02:26:14.714 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:14.714 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:14.714 -07 000000444 INF: FPGA: Recv ZSGSRD 30329
17-03-18 02:26:14.724 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:14.724 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:14.724 -07 000000579 INF: FPGA: Recv ZSGSRD 30328
17-03-18 02:26:14.734 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:14.734 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:14.734 -07 000000561 INF: FPGA: Recv ZSGSRD 30328
17-03-18 02:26:14.744 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:14.744 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:14.744 -07 000000590 INF: FPGA: Recv ZSGSRD 30327
17-03-18 02:26:14.754 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:14.754 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:14.754 -07 000000606 INF: FPGA: Recv ZSGSRD 30328
17-03-18 02:26:14.764 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:14.764 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:14.764 -07 000000455 INF: FPGA: Recv ZSGSRD 30329
17-03-18 02:26:14.774 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:14.774 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:26:14.774 -07 000000626 INF: FPGA: Recv ZPIEZORD 26134
17-03-18 02:26:14.784 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:14.784 -07 000000424 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.505 V. Piezo Error = -9.2 V.
17-03-18 02:26:14.784 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.1 um, Read 10 ADC samples: Avg = 30328 (-134.4 uncal um), Error = 0.8 uncal um, Median = 30328 (-134.4 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 30326 (-134.4 uncal um), Max = 30330 (-134.4 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 02:26:14.784 -07 000000424 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30328, posNoise = 2, negNoise = 2
17-03-18 02:26:14.784 -07 000000424 INF: Z Motor: After move to -0.135143, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:26:14.784 -07 000000424 INF: Z Motor: Settle wait time = 1467 ms, measure time = 109 ms (allowed 150 ms), total time = 1576 ms
17-03-18 02:26:14.784 -07 000000424 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:26:14.834 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 02:26:14.834 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:26:14.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:26:14.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:26:14.834 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:26:14.834 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:26:14.834 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:26:14.834 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:26:14.834 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:26:14.834 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:26:14.844 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:26:14.844 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:26:14.854 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 02:26:14.854 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:26:14.864 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:26:14.904 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:26:15.204 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:26:15.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:26:15.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:26:15.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:26:15.244 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:26:15.244 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 02:26:15.244 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 376 ms to get response, and 391 ms overall
17-03-18 02:26:15.334 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 02:26:15.334 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:15.334 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:26:15.334 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 02:26:15.344 -07 000000590 INF: Autofocus start
17-03-18 02:26:15.344 -07 000000590 INF: MeasureProfile start
17-03-18 02:26:15.344 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:26:15.344 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:26:15.354 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:26:15.354 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:26:15.354 -07 000000590 INF: MeasureProfile done
17-03-18 02:26:15.354 -07 000000590 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:26:15.354 -07 000000590 INF: Autofocus finished
17-03-18 02:26:15.554 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:26:15.554 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:26:15.554 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.135156857846461. ----------
17-03-18 02:26:15.554 -07 000000610 INF: Cycle	99	Tile	16	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:26:15.564 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28030, sync = True, waitForSettling = True)
17-03-18 02:26:15.564 -07 000000610 INF: Z Motor: Moving to -0.128313 mm, started at -0.135157 mm, distance = 6.84 um
17-03-18 02:26:15.564 -07 000000610 INF: FPGA: Xmit ZDACW 28030\n [Z Motor]
17-03-18 02:26:15.564 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:26:15.574 -07 000000610 INF: FPGA: 'ZDACW 28030' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:15.574 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:26:15.574 -07 000000424 INF: FPGA: Recv ZDACR 28030
17-03-18 02:26:15.584 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:15.584 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:26:15.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:15.734 -07 000000591 INF: FPGA: Recv ZSGSRD 29271
17-03-18 02:26:15.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:15.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:15.744 -07 000000606 INF: FPGA: Recv ZSGSRD 29260
17-03-18 02:26:15.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:15.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:15.754 -07 000000576 INF: FPGA: Recv ZSGSRD 29260
17-03-18 02:26:15.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:15.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:15.774 -07 000000579 INF: FPGA: Recv ZSGSRD 29270
17-03-18 02:26:15.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:26:15.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:15.784 -07 000000501 INF: FPGA: Recv ZSGSRD 29267
17-03-18 02:26:15.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:15.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:15.794 -07 000000424 INF: FPGA: Recv ZSGSRD 29261
17-03-18 02:26:15.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:15.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:15.804 -07 000000569 INF: FPGA: Recv ZSGSRD 29269
17-03-18 02:26:15.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:15.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:15.814 -07 000000618 INF: FPGA: Recv ZSGSRD 29268
17-03-18 02:26:15.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:15.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:15.824 -07 000000579 INF: FPGA: Recv ZSGSRD 29259
17-03-18 02:26:15.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:15.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:15.834 -07 000000462 INF: FPGA: Recv ZSGSRD 29265
17-03-18 02:26:15.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:15.844 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:26:15.844 -07 000000629 INF: FPGA: Recv ZPIEZORD 24779
17-03-18 02:26:15.854 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:15.854 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.277 V. Piezo Error = -9.8 V.
17-03-18 02:26:15.854 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29265 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29266 (-127.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29259 (-127.5 uncal um), Max = 29271 (-127.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:26:15.854 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29265, posNoise = 6, negNoise = 6
17-03-18 02:26:15.854 -07 000000610 INF: Z Motor: After move to -0.128313, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:26:15.854 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms)
17-03-18 02:26:15.854 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:26:15.854 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:26:15.854 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:26:15.854 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:26:15.854 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:26:15.854 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:26:15.854 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:26:15.854 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:26:15.854 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:26:15.854 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:26:15.854 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:26:15.854 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:26:15.854 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:26:15.864 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:26:15.864 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:26:15.864 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:26:15.864 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:26:15.864 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:26:15.874 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 02:26:15.874 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:26:15.874 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28206 150\n [Camera]
17-03-18 02:26:16.074 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 02:26:16.084 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 4.024884,
17-03-18 02:26:16.474 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:26:16.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:26:16.474 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:26:16.474 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:26:16.474 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:26:16.474 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:26:16.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:26:16.474 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:26:16.474 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:26:16.474 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:26:16.474 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:26:16.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:26:16.664 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28206 780
17-03-18 02:26:16.814 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:26:16.854 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 02:26:16.854 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 02:26:16.854 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:16.854 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 02:26:16.854 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:26:16.854 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:16.854 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:26:16.854 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:26:16.854 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:26:16.864 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:26:17.004 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:26:17.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:26:17.114 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:26:17.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:26:17.114 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:26:17.114 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:26:17.114 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:26:17.114 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) start.
17-03-18 02:26:17.124 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:26:17.124 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:26:17.194 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:26:17.194 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:26:17.194 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28206 150' command took 2 ms to send, 1314 ms to get response, and 1319 ms overall
17-03-18 02:26:17.194 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:26:17.194 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.128327920339769. ------
17-03-18 02:26:17.204 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:26:17.204 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13489 mm
17-03-18 02:26:17.204 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:26:17.204 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:26:17.204 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 02:26:17.204 -07 000000444 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-18 02:26:17.204 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29468, sync = True, waitForSettling = False)
17-03-18 02:26:17.204 -07 000000512 INF: Z Motor: Moving to -0.134896 mm, started at -0.128328 mm, distance = -6.57 um
17-03-18 02:26:17.214 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:17.214 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:26:17.214 -07 000000424 INF: FPGA: Recv YRDPOS 148173
17-03-18 02:26:17.224 -07 000000512 INF: FPGA: Xmit ZDACW 29468\n [Z Motor]
17-03-18 02:26:17.224 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:26:17.224 -07 000000444 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:26:17.224 -07 000000444 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:26:17.224 -07 000000444 INF: Y Motor: Moving 1348 steps-27
17-03-18 02:26:17.224 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:26:17.234 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:26:17.234 -07 000000512 INF: FPGA: 'ZDACW 29468' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:26:17.244 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:26:17.254 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:26:17.254 -07 000000618 INF: FPGA: Recv ZDACR 29468
17-03-18 02:26:17.264 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:26:17.264 -07 000000512 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 02:26:17.434 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:26:17.434 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:26:17.504 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 02:26:17.504 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:26:17.504 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:17.504 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 02:26:17.504 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:26:17.504 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:17.514 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:26:17.514 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:26:17.514 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:26:17.514 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:26:17.614 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 02:26:17.614 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 02:26:17.664 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:26:17.664 -07 000000430 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:26:17.674 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:26:17.674 -07 000000444 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:26:17.674 -07 000000444 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 02:26:17.674 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.843 mm, average velocity = 2.133 mm/sec
17-03-18 02:26:18.624 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:26:18.624 -07 000000569 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:26:18.634 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:26:18.634 -07 000000444 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:26:18.654 -07 000000444 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:26:18.654 -07 000000444 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:26:18.654 -07 000000444 INF: Y Motor: Moved to 73.1763 after 1453 ms (table move)
17-03-18 02:26:18.664 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134896 mm (DAC = 29468)
17-03-18 02:26:18.664 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:18.664 -07 000000626 INF: FPGA: Recv ZSGSRD 30285
17-03-18 02:26:18.674 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:18.674 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:18.674 -07 000000576 INF: FPGA: Recv ZSGSRD 30291
17-03-18 02:26:18.684 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:18.684 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:18.684 -07 000000461 INF: FPGA: Recv ZSGSRD 30290
17-03-18 02:26:18.694 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:18.694 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:18.694 -07 000000467 INF: FPGA: Recv ZSGSRD 30292
17-03-18 02:26:18.704 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:18.704 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:18.704 -07 000000579 INF: FPGA: Recv ZSGSRD 30293
17-03-18 02:26:18.714 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:18.714 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:18.714 -07 000000606 INF: FPGA: Recv ZSGSRD 30287
17-03-18 02:26:18.724 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:18.724 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:18.724 -07 000000576 INF: FPGA: Recv ZSGSRD 30288
17-03-18 02:26:18.734 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:18.734 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:18.734 -07 000000591 INF: FPGA: Recv ZSGSRD 30281
17-03-18 02:26:18.744 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:18.744 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:18.744 -07 000000467 INF: FPGA: Recv ZSGSRD 30285
17-03-18 02:26:18.754 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:18.754 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:18.754 -07 000000629 INF: FPGA: Recv ZSGSRD 30292
17-03-18 02:26:18.764 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:18.764 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:26:18.764 -07 000000606 INF: FPGA: Recv ZPIEZORD 26130
17-03-18 02:26:18.774 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:18.774 -07 000000561 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.497 V. Piezo Error = -9.1 V.
17-03-18 02:26:18.774 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30288 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30289 (-134.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30281 (-134.1 uncal um), Max = 30293 (-134.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:26:18.774 -07 000000561 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30288, posNoise = 5, negNoise = 7
17-03-18 02:26:18.774 -07 000000561 INF: Z Motor: After move to -0.134896, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:26:18.774 -07 000000561 INF: Z Motor: Settle wait time = 1456 ms, measure time = 110 ms (allowed 150 ms), total time = 1566 ms
17-03-18 02:26:18.774 -07 000000561 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:26:18.814 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-18 02:26:18.814 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:26:18.814 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:26:18.814 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:26:18.814 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:26:18.814 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:26:18.814 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:26:18.814 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:26:18.814 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:26:18.824 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:26:18.824 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:26:18.824 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:26:18.834 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:26:18.834 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 02:26:18.834 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:26:18.884 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:26:19.184 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:26:19.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:26:19.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:26:19.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:26:19.224 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:26:19.224 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 02:26:19.224 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 02:26:19.304 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 02:26:19.304 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:19.304 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:26:19.304 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 02:26:19.324 -07 000000501 INF: Autofocus start
17-03-18 02:26:19.324 -07 000000501 INF: MeasureProfile start
17-03-18 02:26:19.324 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:26:19.324 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:26:19.334 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:26:19.334 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:26:19.334 -07 000000501 INF: MeasureProfile done
17-03-18 02:26:19.334 -07 000000501 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:26:19.334 -07 000000501 INF: Autofocus finished
17-03-18 02:26:19.534 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:26:19.534 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 02:26:19.544 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.134899889360791. ----------
17-03-18 02:26:19.544 -07 000000610 INF: Cycle	99	Tile	17	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:26:19.544 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27992, sync = True, waitForSettling = True)
17-03-18 02:26:19.554 -07 000000610 INF: Z Motor: Moving to -0.128139 mm, started at -0.134900 mm, distance = 6.76 um
17-03-18 02:26:19.554 -07 000000610 INF: FPGA: Xmit ZDACW 27992\n [Z Motor]
17-03-18 02:26:19.554 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:26:19.564 -07 000000610 INF: FPGA: 'ZDACW 27992' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:19.564 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:26:19.564 -07 000000626 INF: FPGA: Recv ZDACR 27992
17-03-18 02:26:19.574 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:19.574 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:26:19.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:19.724 -07 000000629 INF: FPGA: Recv ZSGSRD 29240
17-03-18 02:26:19.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:26:19.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:19.734 -07 000000502 INF: FPGA: Recv ZSGSRD 29238
17-03-18 02:26:19.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:19.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:19.744 -07 000000430 INF: FPGA: Recv ZSGSRD 29237
17-03-18 02:26:19.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:19.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:19.754 -07 000000512 INF: FPGA: Recv ZSGSRD 29235
17-03-18 02:26:19.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:19.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:19.764 -07 000000561 INF: FPGA: Recv ZSGSRD 29235
17-03-18 02:26:19.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:19.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:19.774 -07 000000455 INF: FPGA: Recv ZSGSRD 29235
17-03-18 02:26:19.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:19.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:19.784 -07 000000569 INF: FPGA: Recv ZSGSRD 29236
17-03-18 02:26:19.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:19.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:19.794 -07 000000618 INF: FPGA: Recv ZSGSRD 29238
17-03-18 02:26:19.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:19.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:19.804 -07 000000430 INF: FPGA: Recv ZSGSRD 29235
17-03-18 02:26:19.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:19.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:19.814 -07 000000590 INF: FPGA: Recv ZSGSRD 29236
17-03-18 02:26:19.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:19.824 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:26:19.824 -07 000000462 INF: FPGA: Recv ZPIEZORD 24769
17-03-18 02:26:19.834 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:19.834 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.271 V. Piezo Error = -9.8 V.
17-03-18 02:26:19.834 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29236 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29236 (-127.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29235 (-127.4 uncal um), Max = 29240 (-127.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 1 (0.0 uncal um)
17-03-18 02:26:19.834 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29236, posNoise = 4, negNoise = 1
17-03-18 02:26:19.834 -07 000000610 INF: Z Motor: After move to -0.128139, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:26:19.834 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:26:19.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:26:19.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:26:19.834 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:26:19.834 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:26:19.834 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:26:19.834 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:26:19.834 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:26:19.834 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:26:19.834 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:26:19.834 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:26:19.834 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:26:19.834 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:26:19.844 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:26:19.844 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:26:19.844 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:26:19.844 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:26:19.854 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 02:26:19.854 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:26:19.854 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 02:26:19.854 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:26:19.854 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28169 150\n [Camera]
17-03-18 02:26:20.054 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:26:20.454 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:26:20.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:26:20.454 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:26:20.454 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:26:20.454 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:26:20.454 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:26:20.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:26:20.454 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:26:20.454 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:26:20.454 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:26:20.644 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28169 780
17-03-18 02:26:20.794 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:26:20.834 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:26:20.834 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:26:20.834 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:20.834 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:26:20.834 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:26:20.834 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:20.834 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:26:20.834 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:26:20.834 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:26:20.844 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:26:20.984 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:26:20.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:26:20.984 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:26:21.114 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:26:21.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:26:21.114 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:26:21.114 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:26:21.114 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:26:21.114 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:26:21.114 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) start.
17-03-18 02:26:21.174 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:26:21.174 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:26:21.174 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28169 150' command took 2 ms to send, 1316 ms to get response, and 1319 ms overall
17-03-18 02:26:21.174 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:26:21.174 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128141618187658. ------
17-03-18 02:26:21.184 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:26:21.184 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13447 mm
17-03-18 02:26:21.184 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:26:21.184 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 02:26:21.184 -07 000000576 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 02:26:21.184 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 29375, sync = True, waitForSettling = False)
17-03-18 02:26:21.184 -07 000000579 INF: Z Motor: Moving to -0.134470 mm, started at -0.128142 mm, distance = -6.33 um
17-03-18 02:26:21.184 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:26:21.194 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:26:21.194 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:26:21.194 -07 000000462 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:26:21.204 -07 000000579 INF: FPGA: Xmit ZDACW 29375\n [Z Motor]
17-03-18 02:26:21.204 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:26:21.204 -07 000000576 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:26:21.204 -07 000000576 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:26:21.204 -07 000000576 INF: Y Motor: Moving 1354 steps-33
17-03-18 02:26:21.204 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:26:21.214 -07 000000579 INF: FPGA: 'ZDACW 29375' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:26:21.214 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:26:21.224 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:26:21.234 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:26:21.234 -07 000000569 INF: FPGA: Recv ZDACR 29375
17-03-18 02:26:21.244 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:26:21.244 -07 000000579 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 02:26:21.414 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:26:21.414 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 02:26:21.444 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 4.024884,
17-03-18 02:26:21.474 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:26:21.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:26:21.514 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 02:26:21.514 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 02:26:21.514 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:26:21.514 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:21.514 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 02:26:21.514 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:21.524 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:26:21.524 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 538 ms.
17-03-18 02:26:21.524 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:26:21.534 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 02:26:21.594 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 02:26:21.594 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 02:26:21.634 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:26:21.634 -07 000000502 INF: FPGA: Recv YRDPOS 151569
17-03-18 02:26:21.644 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:26:21.644 -07 000000576 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:26:21.644 -07 000000576 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:26:21.644 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.846 mm, average velocity = 2.143 mm/sec
17-03-18 02:26:22.594 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:26:22.594 -07 000000455 INF: FPGA: Recv YRDPOS 151569
17-03-18 02:26:22.604 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:22.604 -07 000000576 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:26:22.624 -07 000000576 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:26:22.624 -07 000000576 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:26:22.624 -07 000000576 INF: Y Motor: Moved to 74.0083 after 1436 ms (table move)
17-03-18 02:26:22.624 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134470 mm (DAC = 29375)
17-03-18 02:26:22.624 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:22.624 -07 000000502 INF: FPGA: Recv ZSGSRD 30219
17-03-18 02:26:22.634 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:26:22.634 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:22.634 -07 000000444 INF: FPGA: Recv ZSGSRD 30220
17-03-18 02:26:22.644 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:22.644 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:22.644 -07 000000467 INF: FPGA: Recv ZSGSRD 30218
17-03-18 02:26:22.654 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:22.654 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:22.654 -07 000000462 INF: FPGA: Recv ZSGSRD 30223
17-03-18 02:26:22.664 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:22.664 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:22.664 -07 000000606 INF: FPGA: Recv ZSGSRD 30219
17-03-18 02:26:22.674 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:22.674 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:22.674 -07 000000590 INF: FPGA: Recv ZSGSRD 30230
17-03-18 02:26:22.684 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:22.684 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:22.684 -07 000000618 INF: FPGA: Recv ZSGSRD 30224
17-03-18 02:26:22.694 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:22.694 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:22.694 -07 000000430 INF: FPGA: Recv ZSGSRD 30226
17-03-18 02:26:22.704 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:22.704 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:22.704 -07 000000462 INF: FPGA: Recv ZSGSRD 30218
17-03-18 02:26:22.714 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:22.714 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:22.714 -07 000000606 INF: FPGA: Recv ZSGSRD 30216
17-03-18 02:26:22.724 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:22.724 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:26:22.724 -07 000000629 INF: FPGA: Recv ZPIEZORD 26074
17-03-18 02:26:22.734 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:22.734 -07 000000424 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.482 V. Piezo Error = -9.1 V.
17-03-18 02:26:22.734 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30221 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30220 (-133.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30216 (-133.6 uncal um), Max = 30230 (-133.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:26:22.734 -07 000000424 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30221, posNoise = 9, negNoise = 5
17-03-18 02:26:22.734 -07 000000424 INF: Z Motor: After move to -0.134470, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:26:22.734 -07 000000424 INF: Z Motor: Settle wait time = 1439 ms, measure time = 105 ms (allowed 150 ms), total time = 1544 ms
17-03-18 02:26:22.734 -07 000000424 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 02:26:22.784 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-18 02:26:22.784 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:26:22.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:26:22.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:26:22.784 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:26:22.784 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:26:22.784 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:26:22.784 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:26:22.784 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:26:22.784 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:26:22.794 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:26:22.794 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:26:22.794 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:26:22.794 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:26:22.804 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:26:22.844 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:26:23.144 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:26:23.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:26:23.144 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:26:23.144 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:26:23.184 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:26:23.184 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 02:26:23.184 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:26:23.264 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 02:26:23.264 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:23.264 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:26:23.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 02:26:23.284 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:26:23.284 -07 000000579 INF: Autofocus start
17-03-18 02:26:23.284 -07 000000579 INF: MeasureProfile start
17-03-18 02:26:23.284 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:26:23.294 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:26:23.294 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:26:23.294 -07 000000579 INF: MeasureProfile done
17-03-18 02:26:23.294 -07 000000579 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:26:23.294 -07 000000579 INF: Autofocus finished
17-03-18 02:26:23.494 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:26:23.494 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:26:23.504 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.134469467147293. ----------
17-03-18 02:26:23.504 -07 000000610 INF: Cycle	99	Tile	18	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:26:23.504 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27882, sync = True, waitForSettling = True)
17-03-18 02:26:23.504 -07 000000610 INF: Z Motor: Moving to -0.127636 mm, started at -0.134469 mm, distance = 6.83 um
17-03-18 02:26:23.504 -07 000000610 INF: FPGA: Xmit ZDACW 27882\n [Z Motor]
17-03-18 02:26:23.504 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:26:23.514 -07 000000610 INF: FPGA: 'ZDACW 27882' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:26:23.514 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:26:23.514 -07 000000501 INF: FPGA: Recv ZDACR 27882
17-03-18 02:26:23.524 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:23.524 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:26:23.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:23.674 -07 000000569 INF: FPGA: Recv ZSGSRD 29157
17-03-18 02:26:23.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:26:23.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:23.684 -07 000000512 INF: FPGA: Recv ZSGSRD 29162
17-03-18 02:26:23.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:23.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:23.694 -07 000000462 INF: FPGA: Recv ZSGSRD 29157
17-03-18 02:26:23.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:23.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:23.704 -07 000000606 INF: FPGA: Recv ZSGSRD 29153
17-03-18 02:26:23.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:23.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:23.714 -07 000000579 INF: FPGA: Recv ZSGSRD 29162
17-03-18 02:26:23.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:23.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:23.724 -07 000000590 INF: FPGA: Recv ZSGSRD 29160
17-03-18 02:26:23.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:23.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:23.734 -07 000000461 INF: FPGA: Recv ZSGSRD 29161
17-03-18 02:26:23.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:23.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:23.744 -07 000000462 INF: FPGA: Recv ZSGSRD 29160
17-03-18 02:26:23.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:23.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:23.754 -07 000000467 INF: FPGA: Recv ZSGSRD 29158
17-03-18 02:26:23.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:23.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:23.764 -07 000000444 INF: FPGA: Recv ZSGSRD 29157
17-03-18 02:26:23.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:23.774 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:26:23.774 -07 000000569 INF: FPGA: Recv ZPIEZORD 24666
17-03-18 02:26:23.784 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:23.784 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.255 V. Piezo Error = -9.9 V.
17-03-18 02:26:23.784 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.6 um, Read 10 ADC samples: Avg = 29159 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29159 (-126.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29153 (-126.8 uncal um), Max = 29162 (-126.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:26:23.784 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29159, posNoise = 3, negNoise = 6
17-03-18 02:26:23.784 -07 000000610 INF: Z Motor: After move to -0.127636, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:26:23.784 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:26:23.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:26:23.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:26:23.784 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:26:23.784 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:26:23.784 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:26:23.784 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:26:23.784 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:26:23.784 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:26:23.784 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:26:23.784 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:26:23.784 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:26:23.784 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:26:23.794 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:26:23.794 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:26:23.794 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:26:23.794 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:26:23.794 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:26:23.794 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:26:23.804 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:26:23.804 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:26:23.804 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28059 150\n [Camera]
17-03-18 02:26:24.004 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:26:24.394 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:26:24.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:26:24.394 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:26:24.394 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:26:24.394 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:26:24.404 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:26:24.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:26:24.404 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:26:24.404 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:26:24.404 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:26:24.594 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28059 780
17-03-18 02:26:24.734 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:26:24.784 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 02:26:24.784 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:26:24.784 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:24.784 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 02:26:24.784 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 02:26:24.784 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:24.794 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:26:24.794 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:26:24.794 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:26:24.794 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:26:24.934 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:26:24.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:26:24.934 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:26:25.044 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:26:25.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:26:25.044 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:26:25.044 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:26:25.044 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) start.
17-03-18 02:26:25.044 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:26:25.044 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:26:25.124 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:26:25.124 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:26:25.124 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28059 150' command took 2 ms to send, 1312 ms to get response, and 1319 ms overall
17-03-18 02:26:25.124 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:26:25.124 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.127646953852743. ------
17-03-18 02:26:25.124 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:26:25.124 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13348 mm
17-03-18 02:26:25.124 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:26:25.134 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 02:26:25.134 -07 000000569 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 02:26:25.134 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:26:25.134 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29159, sync = True, waitForSettling = False)
17-03-18 02:26:25.134 -07 000000424 INF: Z Motor: Moving to -0.133481 mm, started at -0.127647 mm, distance = -5.83 um
17-03-18 02:26:25.134 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:26:25.134 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-18 02:26:25.134 -07 000000626 INF: FPGA: Recv YRDPOS 151570
17-03-18 02:26:25.144 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:26:25.144 -07 000000569 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:26:25.144 -07 000000424 INF: FPGA: Xmit ZDACW 29159\n [Z Motor]
17-03-18 02:26:25.144 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:26:25.144 -07 000000569 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:26:25.144 -07 000000569 INF: Y Motor: Moving 1350 steps-29
17-03-18 02:26:25.154 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:26:25.154 -07 000000424 INF: FPGA: 'ZDACW 29159' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:26:25.164 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:26:25.174 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:26:25.174 -07 000000501 INF: FPGA: Recv ZDACR 29159
17-03-18 02:26:25.184 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:26:25.184 -07 000000424 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 02:26:25.354 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:26:25.354 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 217 ms overall
17-03-18 02:26:25.444 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:26:25.444 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:26:25.444 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:25.454 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 02:26:25.454 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:26:25.454 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:25.454 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:26:25.454 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:26:25.454 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 02:26:25.464 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:26:25.534 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 02:26:25.534 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 02:26:25.564 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:26:25.564 -07 000000467 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:26:25.574 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:26:25.574 -07 000000569 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:26:25.574 -07 000000569 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-18 02:26:25.574 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.159 mm/sec
17-03-18 02:26:26.474 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:26:26.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 98. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:26:26.524 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:26:26.524 -07 000000461 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:26:26.534 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:26:26.534 -07 000000569 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:26:26.544 -07 000000569 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:26:26.544 -07 000000569 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:26:26.544 -07 000000569 INF: Y Motor: Moved to 74.8320 after 1415 ms (table move)
17-03-18 02:26:26.554 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133481 mm (DAC = 29159)
17-03-18 02:26:26.554 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:26.554 -07 000000502 INF: FPGA: Recv ZSGSRD 30073
17-03-18 02:26:26.564 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:26:26.564 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:26.564 -07 000000444 INF: FPGA: Recv ZSGSRD 30056
17-03-18 02:26:26.574 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:26.574 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:26.574 -07 000000576 INF: FPGA: Recv ZSGSRD 30054
17-03-18 02:26:26.584 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:26.584 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:26.584 -07 000000579 INF: FPGA: Recv ZSGSRD 30064
17-03-18 02:26:26.594 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:26.594 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:26.594 -07 000000626 INF: FPGA: Recv ZSGSRD 30068
17-03-18 02:26:26.604 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:26.604 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:26.604 -07 000000462 INF: FPGA: Recv ZSGSRD 30068
17-03-18 02:26:26.614 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:26.614 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:26.614 -07 000000455 INF: FPGA: Recv ZSGSRD 30067
17-03-18 02:26:26.624 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:26.624 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:26.624 -07 000000444 INF: FPGA: Recv ZSGSRD 30079
17-03-18 02:26:26.634 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:26.634 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:26.634 -07 000000462 INF: FPGA: Recv ZSGSRD 30071
17-03-18 02:26:26.644 -07 000000618 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:26.644 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:26.644 -07 000000606 INF: FPGA: Recv ZSGSRD 30067
17-03-18 02:26:26.654 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:26.654 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:26:26.654 -07 000000467 INF: FPGA: Recv ZPIEZORD 25893
17-03-18 02:26:26.664 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:26.664 -07 000000618 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.449 V. Piezo Error = -9.2 V.
17-03-18 02:26:26.664 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.5 um, Read 10 ADC samples: Avg = 30067 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30068 (-132.7 uncal um), StdDev = 7 (0.0 uncal um), Range = 25 (0.2 uncal um), Min = 30054 (-132.6 uncal um), Max = 30079 (-132.8 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-18 02:26:26.664 -07 000000618 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30067, posNoise = 12, negNoise = 13
17-03-18 02:26:26.664 -07 000000618 INF: Z Motor: After move to -0.133481, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:26:26.664 -07 000000618 INF: Z Motor: Settle wait time = 1418 ms, measure time = 109 ms (allowed 150 ms), total time = 1527 ms
17-03-18 02:26:26.664 -07 000000618 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:26:26.714 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1581 ms
17-03-18 02:26:26.714 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:26:26.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:26:26.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:26:26.714 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:26:26.714 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:26:26.714 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:26:26.714 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:26:26.714 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:26:26.714 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:26:26.724 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:26:26.724 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:26:26.734 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:26:26.734 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 02:26:26.734 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:26:26.784 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:26:26.804 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 4.031682,
17-03-18 02:26:27.084 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:26:27.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:26:27.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:26:27.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:26:27.124 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:26:27.124 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 02:26:27.124 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 02:26:27.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 122 ms.
17-03-18 02:26:27.204 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:27.204 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:26:27.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-18 02:26:27.224 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:26:27.224 -07 000000590 INF: Autofocus start
17-03-18 02:26:27.224 -07 000000590 INF: MeasureProfile start
17-03-18 02:26:27.224 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:26:27.234 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:26:27.234 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:26:27.234 -07 000000590 INF: MeasureProfile done
17-03-18 02:26:27.244 -07 000000590 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:26:27.244 -07 000000590 INF: Autofocus finished
17-03-18 02:26:27.434 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:26:27.434 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-18 02:26:27.434 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.133480138477462. ----------
17-03-18 02:26:27.444 -07 000000610 INF: Cycle	99	Tile	19	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:26:27.444 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27684, sync = True, waitForSettling = True)
17-03-18 02:26:27.444 -07 000000610 INF: Z Motor: Moving to -0.126729 mm, started at -0.133480 mm, distance = 6.75 um
17-03-18 02:26:27.444 -07 000000610 INF: FPGA: Xmit ZDACW 27684\n [Z Motor]
17-03-18 02:26:27.444 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:26:27.454 -07 000000610 INF: FPGA: 'ZDACW 27684' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:26:27.454 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:26:27.454 -07 000000455 INF: FPGA: Recv ZDACR 27684
17-03-18 02:26:27.464 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:27.464 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:26:27.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:27.614 -07 000000629 INF: FPGA: Recv ZSGSRD 29016
17-03-18 02:26:27.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:27.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:27.624 -07 000000462 INF: FPGA: Recv ZSGSRD 29018
17-03-18 02:26:27.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:27.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:27.634 -07 000000430 INF: FPGA: Recv ZSGSRD 29011
17-03-18 02:26:27.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:27.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:27.644 -07 000000576 INF: FPGA: Recv ZSGSRD 29018
17-03-18 02:26:27.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:27.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:27.654 -07 000000512 INF: FPGA: Recv ZSGSRD 29024
17-03-18 02:26:27.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:27.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:27.664 -07 000000502 INF: FPGA: Recv ZSGSRD 29014
17-03-18 02:26:27.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:27.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:27.674 -07 000000591 INF: FPGA: Recv ZSGSRD 29020
17-03-18 02:26:27.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:27.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:27.684 -07 000000430 INF: FPGA: Recv ZSGSRD 29012
17-03-18 02:26:27.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:27.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:27.694 -07 000000569 INF: FPGA: Recv ZSGSRD 29018
17-03-18 02:26:27.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:27.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:26:27.704 -07 000000455 INF: FPGA: Recv ZSGSRD 29018
17-03-18 02:26:27.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:27.714 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:26:27.714 -07 000000424 INF: FPGA: Recv ZPIEZORD 24505
17-03-18 02:26:27.724 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:27.724 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.224 V. Piezo Error = -9.9 V.
17-03-18 02:26:27.724 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.7 um, Read 10 ADC samples: Avg = 29017 (-126.0 uncal um), Error = 0.8 uncal um, Median = 29018 (-126.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29011 (-125.9 uncal um), Max = 29024 (-126.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:26:27.724 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29017, posNoise = 7, negNoise = 6
17-03-18 02:26:27.724 -07 000000610 INF: Z Motor: After move to -0.126729, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:26:27.724 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:26:27.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:26:27.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:26:27.724 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:26:27.724 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:26:27.724 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:26:27.724 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:26:27.724 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:26:27.724 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:26:27.724 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 02:26:27.724 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:26:27.724 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:26:27.724 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:26:27.724 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:26:27.734 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:26:27.734 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:26:27.734 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:26:27.744 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:26:27.744 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:26:27.744 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:26:27.744 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:26:27.744 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 27860 150\n [Camera]
17-03-18 02:26:27.944 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:26:28.334 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:26:28.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:26:28.334 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:26:28.334 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:26:28.334 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:26:28.344 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:26:28.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:26:28.344 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:26:28.344 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:26:28.344 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:26:28.534 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27860 780
17-03-18 02:26:28.674 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:26:28.724 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 02:26:28.724 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:26:28.724 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:28.724 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 02:26:28.724 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 02:26:28.724 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:28.724 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:26:28.724 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:26:28.724 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:26:28.734 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:26:28.874 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:26:28.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:26:28.984 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:26:28.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:26:28.984 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:26:28.984 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:26:28.984 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:26:28.984 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) start.
17-03-18 02:26:28.984 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:26:28.984 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:26:29.064 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:26:29.064 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:26:29.064 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 27860 150' command took 2 ms to send, 1312 ms to get response, and 1319 ms overall
17-03-18 02:26:29.374 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1145266312, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 02:26:29.374 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:26:29.374 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:29.374 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 02:26:29.374 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:26:29.374 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:26:29.384 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:26:29.384 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:26:29.384 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:26:29.384 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 02:26:29.384 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:26:29.424 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 02:26:29.424 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 02:26:29.464 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 02:26:29.484 -07 000000610 INF: Enabling Skipping AutoFocus in the next 5 cycles.
17-03-18 02:26:29.484 -07 000000610 INF: Imaging Cycle 99: ScanTilesCommand Cycle 99 time end. Duration was 157004 ms.
17-03-18 02:26:29.484 -07 000000610 INF: =================== Cycle #99 ===================
17-03-18 02:26:29.484 -07 000000610 INF: ===================  ===================
17-03-18 02:26:29.484 -07 000000626 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 02:26:29.484 -07 000000444 INF: FPGA: Recv EXLED1ADCR 23
17-03-18 02:26:29.494 -07 000000626 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:26:29.494 -07 000000626 INF: GreenLED: Using Green data: Photodiode ADC 23 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.6 mW
17-03-18 02:26:29.494 -07 000000626 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 99, FrontChillerTemperature: 4.031682, FrontChillerHeatSinkTemperature: 0.308617, AmbientTemperature: 18.782, FlowCellCompartmentTemperature: 21.99544, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.68679, GreenLEDSensorTemperature: 26.65491, PhotodiodePowerAdcGreen: 23, PhotodiodePowerMwGreen: 1.653493
17-03-18 02:26:29.564 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.